Citrus Sinensis ID: 026584

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE
Secondary Structure (PSIPRED)
cEEEEcccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEEcccHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccEcHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccEEEEccHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHcccHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mhivnldpaaenfdypvaMDIRELISLEDVMeelglgpngglIYCMEHLEDNLDDWLAEELDnyldddylvfdcpgqielfthvpVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLElphvnilskmDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDeysmvsfmpldlrkeSSIRYVLSQIDNCiqwgedadlkikdfdpeddde
Flexible Loop (DISEMBL)
mhivnldpaaenfdypvAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNciqwgedadlkikdfdpeddde
Low Complexity Region (SEG)
MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWlaeeldnyldddylVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE
Disordered region (IsUnstruct)
********AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKI**********
Disordered Region (DISOPRED)
MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKI**********
Disordered Region (DISEMBL)
MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE
Disordered Region (DISPRO)
MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q6CQA6	271	GPN-loop GTPase 3 homolog	yes	no	0.940	0.819	0.543	3e-67
Q6BI59	274	GPN-loop GTPase 3 homolog	yes	no	0.919	0.791	0.558	3e-65
Q6FSS0	271	GPN-loop GTPase 3 homolog	yes	no	0.940	0.819	0.521	9e-65
O14443	276	GPN-loop GTPase 3 homolog	yes	no	0.987	0.844	0.520	2e-64
Q750Q9	271	GPN-loop GTPase 3 homolog	yes	no	0.940	0.819	0.521	2e-64
Q54NK8	285	GPN-loop GTPase 3 homolog	yes	no	0.944	0.782	0.513	3e-64
Q4PF70	281	GPN-loop GTPase 3 homolog	N/A	no	0.974	0.818	0.504	6e-64
Q06543	272	GPN-loop GTPase 3 homolog	yes	no	0.940	0.816	0.521	6e-64
Q5A0W6	273	GPN-loop GTPase 3 homolog	N/A	no	0.966	0.835	0.529	7e-64
Q6ZM63	285	GPN-loop GTPase 3 OS=Dani	yes	no	0.974	0.807	0.514	1e-63

>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2

 Score =  254 bits (650), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/228 (54%), Positives = 170/228 (74%), Gaps = 6/228 (2%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           HIVNLDPAAE   Y   +DIR+LISLEDVMEE GLGPNG LIYC E+L +NL DWL EE+
Sbjct: 35  HIVNLDPAAEATKYEFTIDIRDLISLEDVMEEFGLGPNGSLIYCFEYLLNNL-DWLDEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 120
            +Y +D+YL+FDCPGQIEL+TH+PVL   V HL+++ NFN+CA YLL++ F+ D +KF S
Sbjct: 94  GDY-NDEYLIFDCPGQIELYTHIPVLPTIVRHLQNQLNFNLCATYLLEAPFVIDTSKFFS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAK 177
           G ++++SAM+ LELPH+NILSK+DLV    NKK ++ +LNP+   L  ++N+   P+F K
Sbjct: 153 GALSAMSAMILLELPHINILSKLDLVKDSHNKKALKKFLNPDPLLLTDKVNEETNPKFHK 212

Query: 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225
           LN+++  LVD++ MV F+PL+ +   S+  +LS ID+  QW E  + K
Sbjct: 213 LNEAIANLVDDFGMVQFLPLEAKNPESVSTILSYIDDVTQWAEAQEPK 260

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6BI59|GPN3_DEBHA GPN-loop GTPase 3 homolog DEHA2G13222g OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2G13222g PE=3 SV=2

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 169/224 (75%), Gaps = 7/224 (3%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           HIVNLDPAAE  +Y   +DIR+LISL+DVMEE+ LGPNG LIYC E L +NL DWL EE+
Sbjct: 35  HIVNLDPAAEPSEYEFTIDIRDLISLQDVMEEMDLGPNGALIYCFEFLMNNL-DWLDEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFIS 120
            ++ +D+YL+FDCPGQIEL+TH+PVL   V HL+ S NFN+CA YLL++ F+ D +KF S
Sbjct: 94  GDF-NDEYLIFDCPGQIELYTHIPVLPTIVRHLQTSLNFNLCATYLLEAPFVIDRSKFFS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAK 177
           G ++++SAM+ LELPH+NILSK+DL+ N   KKE++ +LNP+   L +  +    P+FAK
Sbjct: 153 GALSAMSAMILLELPHINILSKIDLIKNEVSKKELKKFLNPDPLLLNASSDNESNPKFAK 212

Query: 178 LNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCIQWGE 220
           LNK++  LVD++ MV F+PLD  K+S S+  +LS ID+  QW E
Sbjct: 213 LNKAIANLVDDFGMVQFLPLDCNKDSDSVATILSYIDDVTQWSE 256

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1

 Score =  246 bits (628), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/228 (52%), Positives = 169/228 (74%), Gaps = 6/228 (2%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           HIVNLDPAAE   Y   +DIR+LISL+DVMEEL LGPNG LIYC E+L  NL DWL EE+
Sbjct: 35  HIVNLDPAAEPSKYEFTIDIRDLISLDDVMEELDLGPNGALIYCFEYLMKNL-DWLDEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 120
            +Y +D+YL+FDCPGQIEL+TH+PVL N V HL+ + NFN+CA YLL++ F+ D +KF S
Sbjct: 94  GDY-NDEYLIFDCPGQIELYTHIPVLPNIVRHLQGQLNFNLCATYLLEAPFVIDSSKFFS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAK 177
           G ++++SAM+ LELPH+N+LSK+D++     KK+++ +LNP++  L +E +Q++ P+F  
Sbjct: 153 GALSAMSAMILLELPHINVLSKLDMIKDEYGKKKLKRFLNPDAMLLANEADQNLNPKFHH 212

Query: 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225
           LN+ +  LVD++ MV F+PL+     S+  +LS +D+  QW E  + K
Sbjct: 213 LNQCIANLVDDFGMVQFLPLEANNPESVATILSYVDDVTQWAEAQEQK 260

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|O14443|GPN3_SCHPO GPN-loop GTPase 3 homolog fet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fet5 PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 181/244 (74%), Gaps = 11/244 (4%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           H+VNLDPAAENF++   +DIR+LIS++DVMEEL  GPNGGLIYC E L +NL DWL EE+
Sbjct: 35  HLVNLDPAAENFEWEPTVDIRDLISIDDVMEELDYGPNGGLIYCFEFLMENL-DWLNEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFIS 120
            +Y D+DYL+FD PGQIEL+THVP+L   + HL+ + NF  CAVYLL+SQF+ D TKF +
Sbjct: 94  GDY-DEDYLIFDMPGQIELYTHVPILPALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFA 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTN-----KKEIEDYLNPESQFLLSELNQHMAPQF 175
           G ++++SAMV +E+PH+N+LSKMDL+ +     K E++ +LN +   L  E+N+   P+F
Sbjct: 153 GVLSAMSAMVMMEVPHINLLSKMDLLKDNNNITKAELKRFLNTDPLLLTGEINETTNPKF 212

Query: 176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKD-FDPED- 233
            +LN+ +++L+D+++MV+F+PL+   E S+  VLS ID+  QW ED + K  D F+ +D 
Sbjct: 213 HELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYIDDATQWYEDQEPKDPDRFEADDL 272

Query: 234 -DDE 236
            DDE
Sbjct: 273 EDDE 276

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q750Q9|GPN3_ASHGO GPN-loop GTPase 3 homolog AGL117C OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AGL117C PE=3 SV=1

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/228 (52%), Positives = 169/228 (74%), Gaps = 6/228 (2%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           HIVNLDPAAE  +Y   +DIR+LISL+DVMEEL LGPNG L+YC E+L +NL DWL EE+
Sbjct: 35  HIVNLDPAAEASEYEFTVDIRDLISLDDVMEELSLGPNGSLVYCFEYLLENL-DWLDEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 120
            +Y +D+YL+FDCPGQIEL+TH+PVL   V HL+++ NFN+CA YLL++ F+ D +KF S
Sbjct: 94  GDY-NDEYLIFDCPGQIELYTHIPVLPTIVRHLQNQLNFNLCASYLLEAPFVIDTSKFFS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAK 177
           G ++++SAM+ LELPH+N+LSK+DL+    +KK ++ +LNP+   L+   N     +F +
Sbjct: 153 GALSAMSAMILLELPHINVLSKVDLIKDEYSKKRLKRFLNPDPMLLVDSANADTNSKFHQ 212

Query: 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225
           LNK++  LVD++ MV F+PL+ +   S+  +LS ID+  QWGE  + K
Sbjct: 213 LNKAIANLVDDFGMVQFLPLEAKNPDSVSTILSYIDDITQWGEAQEPK 260

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q54NK8|GPN3_DICDI GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 176/228 (77%), Gaps = 5/228 (2%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +HIVNLDPAAE F+YPV++DI+ L+++++VM+EL  GPNGGL+Y ME+L +N+D WL +E
Sbjct: 34  VHIVNLDPAAEVFEYPVSVDIKNLVTVDEVMDELHYGPNGGLVYAMEYLIENMD-WLTDE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           L +Y +DDYL+ DCPGQIEL++H+PV+R  VDHL+   ++VC+V+L+DSQFI D  KFIS
Sbjct: 93  LGDY-EDDYLIIDCPGQIELYSHIPVMRILVDHLQQIGYSVCSVFLVDSQFILDNCKFIS 151

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNK---KEIEDYLNPESQFLLSELNQHMAPQFAK 177
           G +  LSAMV+LE+PH+N+L+K+D++      KEIE +L+ E Q L+ ELN     ++ +
Sbjct: 152 GALMCLSAMVRLEVPHINVLTKIDVLKTSDQYKEIEKFLDLEVQNLVEELNLETHDRYHR 211

Query: 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225
           +NK++  L++++S+V F+PLD+  + S+  +L  IDN IQ+GED + K
Sbjct: 212 MNKAIGSLLEDFSLVGFVPLDITDQESLNVLLQHIDNSIQYGEDLEPK 259

Dictyostelium discoideum (taxid: 44689)

>sp|Q4PF70|GPN3_USTMA GPN-loop GTPase 3 homolog UM01243 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UM01243 PE=3 SV=1

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 177/248 (71%), Gaps = 18/248 (7%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+ NLDPAAE F+Y  ++DI+ELISLEDVMEE+ LGPNGGLIYC E+L DNL     ++
Sbjct: 34  VHLFNLDPAAERFEYQPSIDIKELISLEDVMEEMNLGPNGGLIYCFEYLLDNL--DWLDD 91

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 119
                +DDY++ DCPGQIEL+TH P++   V+ L S+ +F +CA YLL+SQFI D TK+ 
Sbjct: 92  ELGQFNDDYIIIDCPGQIELYTHFPIMSRLVNILSSQYHFRICATYLLESQFIDDKTKYF 151

Query: 120 SGCMASLSAMVQLELPHVNILSKMDLV-----------TNKKEIEDYLNPESQFLLSELN 168
           +G ++++SAM+ LE+PH+N+LSKMDLV             K+E+E YL+P+   L+ E+N
Sbjct: 152 AGVLSAMSAMINLEVPHINLLSKMDLVEKGEIGSEAKRGRKREMERYLDPDPLLLMDEVN 211

Query: 169 QHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKD 228
               P+F  LN++L++L+D++SMVSFMPLD   E S+  +LS IDN +Q+GED + K   
Sbjct: 212 SRTNPKFHSLNQALVQLIDDFSMVSFMPLDSTDEDSVGTILSHIDNAVQYGEDEEPK--- 268

Query: 229 FDPEDDDE 236
            +P+D DE
Sbjct: 269 -EPKDMDE 275

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q06543|GPN3_YEAST GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR243W PE=1 SV=1

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 168/230 (73%), Gaps = 8/230 (3%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           HIVNLDPAAE   Y   +DIR+LISL+DVMEE+ LGPNG LIYC E+L  NL DWL EE+
Sbjct: 35  HIVNLDPAAEATKYEFTIDIRDLISLDDVMEEMDLGPNGALIYCFEYLLKNL-DWLDEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 120
            ++ +D+YL+FDCPGQIEL+TH+PVL N V HL  + NFN+CA YLL++ F+ D +KF S
Sbjct: 94  GDF-NDEYLIFDCPGQIELYTHIPVLPNIVRHLTQQLNFNLCATYLLEAPFVIDSSKFFS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSE--LNQHMAPQF 175
           G ++++SAM+ LELPH+N+LSK+DL+    NKK+++ +LNP++  L+    +NQ   P+F
Sbjct: 153 GALSAMSAMILLELPHINVLSKLDLIKGDINKKKLKRFLNPDAMLLMETEGMNQASNPKF 212

Query: 176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225
            +LN+ +  LVD++ MV F+PL+     SI  +LS +D+  QW E  + K
Sbjct: 213 LRLNQCIANLVDDFGMVQFLPLESNNPDSIETILSYVDDITQWAEGQEQK 262

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642 PE=3 SV=2

 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 178/240 (74%), Gaps = 12/240 (5%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
           HIVNLDPAA   +Y   +D+++LISL+DVMEE+ LGPNGGL+YC E L +NL DWL EE+
Sbjct: 35  HIVNLDPAANPTEYEFTIDVKDLISLQDVMEEMELGPNGGLVYCFEFLLNNL-DWLDEEI 93

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFIS 120
            +Y +D+YL+FDCPGQIEL+TH+PVL   V HL+ S NFN+CA YLL++ FI D +KF S
Sbjct: 94  GDY-NDEYLIFDCPGQIELYTHIPVLPTIVRHLQTSLNFNLCATYLLEAPFIIDNSKFFS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAK 177
           G ++++SAM+ LELPH+NILSK+DLV    +KK+++ +LNP+   LL++   ++ P+FAK
Sbjct: 153 GALSAMSAMILLELPHINILSKIDLVKDEYSKKQLKKFLNPDP-LLLAKQEDYINPKFAK 211

Query: 178 LNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE 236
           L +S+  LVD++ MV F+PLD  K+S S+  +LS ID+  QW E  + K    +P D+ E
Sbjct: 212 LTQSIANLVDDFGMVQFLPLDCSKDSRSVETILSYIDDVTQWSEAQEPK----EPHDEVE 267

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6ZM63|GPN3_DANRE GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 176/241 (73%), Gaps = 11/241 (4%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEE--LGLGPNGGLIYCMEHLEDNLDDWLA 58
           + +VNLDPAAE+F+YPV  DIRELI ++DVME+  L  GPNGGLI+CME+  +N D WL 
Sbjct: 34  VQVVNLDPAAEHFEYPVIADIRELIQVDDVMEDDSLRFGPNGGLIFCMEYFSNNFD-WLE 92

Query: 59  EELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 118
           E L  +++DDY++FDCPGQIEL+TH+PV++  V+ L+   F VC V+L+DSQF+ +  KF
Sbjct: 93  ESL-GHVEDDYILFDCPGQIELYTHLPVMKQLVEQLQQWEFRVCGVFLVDSQFMVETFKF 151

Query: 119 ISGCMASLSAMVQLELPHVNILSKMDLVT--NKKEIEDYLNPESQFLLSELNQHM-APQF 175
           ISG MA+LSAMV LE+P VNI++KMDL++   KKEIE YL+P+   ++ + +  + + +F
Sbjct: 152 ISGVMAALSAMVMLEIPQVNIMTKMDLLSPKAKKEIEKYLDPDMYSMMEDNSVALRSKKF 211

Query: 176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
           +KL K++  L+D+YSMV F+P D   E  I  VL  ID  IQ+GED ++K    +P++ D
Sbjct: 212 SKLTKAICGLIDDYSMVRFLPFDRTDEEGINIVLQHIDFSIQYGEDLEVK----EPKEVD 267

Query: 236 E 236
           E
Sbjct: 268 E 268

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
255567152	267	XPA-binding protein, putative [Ricinus c	0.995	0.880	0.880	1e-119
225468099	268	PREDICTED: GPN-loop GTPase 3 homolog [Vi	0.961	0.847	0.889	1e-117
356526825	267	PREDICTED: GPN-loop GTPase 3-like [Glyci	0.995	0.880	0.851	1e-117
255638486	267	unknown [Glycine max]	0.995	0.880	0.846	1e-116
388500596	267	unknown [Lotus japonicus]	0.995	0.880	0.838	1e-115
118489704	268	unknown [Populus trichocarpa x Populus d	1.0	0.880	0.851	1e-115
224131986	268	predicted protein [Populus trichocarpa]	1.0	0.880	0.851	1e-115
388493224	267	unknown [Lotus japonicus]	0.995	0.880	0.834	1e-115
108710748	266	expressed protein [Oryza sativa Japonica	0.991	0.879	0.820	1e-113
357117746	266	PREDICTED: GPN-loop GTPase 3-like [Brach	0.991	0.879	0.816	1e-113

>gi|255567152|ref|XP_002524557.1| XPA-binding protein, putative [Ricinus communis] gi|223536110|gb|EEF37765.1| XPA-binding protein, putative [Ricinus communis]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/235 (88%), Positives = 228/235 (97%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +HIVNLDPAAENFDYPV+MDIRELISL+DVMEELGLGPNG L+YCM+ LEDNLDDWL+EE
Sbjct: 33  IHIVNLDPAAENFDYPVSMDIRELISLDDVMEELGLGPNGALMYCMDELEDNLDDWLSEE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNY+DDDYLVFDCPGQIELF+HV VLRNFV+HLK +NFNVCAVYLLDSQFITDVTKFIS
Sbjct: 93  LDNYMDDDYLVFDCPGQIELFSHVSVLRNFVEHLKRKNFNVCAVYLLDSQFITDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAM+QLELPHVNILSKMDLVTNKK+IEDYLNPES+ LLSELN+ MAPQF KLNK
Sbjct: 153 GCMASLSAMIQLELPHVNILSKMDLVTNKKDIEDYLNPESRVLLSELNKRMAPQFVKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
           +LIELVDEYSMVSF+PLDLRKESSI+YVL+QIDNCIQ+GEDAD+KIKDFDPEDD+
Sbjct: 213 ALIELVDEYSMVSFVPLDLRKESSIQYVLAQIDNCIQFGEDADVKIKDFDPEDDE 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468099|ref|XP_002266090.1| PREDICTED: GPN-loop GTPase 3 homolog [Vitis vinifera] gi|296088830|emb|CBI38288.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/227 (88%), Positives = 222/227 (97%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +HIVNLDPAAE+FDYPVAMDIREL+SL+DVMEELGLGPNGGL+YCMEHLE+NLDDWL +E
Sbjct: 33  IHIVNLDPAAESFDYPVAMDIRELVSLDDVMEELGLGPNGGLMYCMEHLEENLDDWLTDE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNYLDDDYLVFDCPGQIELF+HVP+LRNFVDHLK +NFNVCAVYLLDSQF+TDVTKFIS
Sbjct: 93  LDNYLDDDYLVFDCPGQIELFSHVPMLRNFVDHLKRKNFNVCAVYLLDSQFMTDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAMVQLELPHVNILSKMDLVTNK++IEDYLNPE +FLLSELNQ MAPQF KLNK
Sbjct: 153 GCMASLSAMVQLELPHVNILSKMDLVTNKRDIEDYLNPEPRFLLSELNQRMAPQFGKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIK 227
           +LIELVDEYSMVSF+PLDLRKESSIRY+LSQIDNCIQ+GEDAD+K+K
Sbjct: 213 ALIELVDEYSMVSFLPLDLRKESSIRYILSQIDNCIQFGEDADVKVK 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526825|ref|XP_003532017.1| PREDICTED: GPN-loop GTPase 3-like [Glycine max]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/235 (85%), Positives = 225/235 (95%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+VNLDPAAENFDYPVAMDIRELISL+DVMEELGLGPNGGL+YCMEHLEDNLDDWL EE
Sbjct: 33  IHVVNLDPAAENFDYPVAMDIRELISLDDVMEELGLGPNGGLVYCMEHLEDNLDDWLTEE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNYLDDDYLVFDCPGQIEL++HVPVL+NFV+HLK +NF+VCAVYLLDSQF+TDVTKFIS
Sbjct: 93  LDNYLDDDYLVFDCPGQIELYSHVPVLKNFVEHLKRKNFSVCAVYLLDSQFMTDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMA LSAMVQLELPHVNILSKMDLVT KK++ED+L+PE  FLLSELNQ M PQ+AKLNK
Sbjct: 153 GCMACLSAMVQLELPHVNILSKMDLVTKKKDLEDFLDPEPTFLLSELNQRMGPQYAKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
           +LIELV+ YSMVSF+PLDLRKE SI+YVL+QIDNCIQ+GEDAD+K+KDFDPEDD+
Sbjct: 213 ALIELVNNYSMVSFIPLDLRKEKSIQYVLAQIDNCIQYGEDADVKVKDFDPEDDE 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638486|gb|ACU19552.1| unknown [Glycine max]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/235 (84%), Positives = 224/235 (95%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+VNLDPAAENFDYPVAMDIRELISL+DVMEELGLGPNGGL+YCMEHLEDNLDDWL EE
Sbjct: 33  IHVVNLDPAAENFDYPVAMDIRELISLDDVMEELGLGPNGGLVYCMEHLEDNLDDWLTEE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNYLDDDYLVFDCPGQIEL++H PVL+NFV+HLK +NF+VCAVYLLDSQF+TDVTKFIS
Sbjct: 93  LDNYLDDDYLVFDCPGQIELYSHAPVLKNFVEHLKRKNFSVCAVYLLDSQFMTDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMA LSAMVQLELPHVNILSKMDLVT KK++ED+L+PE  FLLSELNQ M PQ+AKLNK
Sbjct: 153 GCMACLSAMVQLELPHVNILSKMDLVTKKKDLEDFLDPEPTFLLSELNQRMGPQYAKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
           +LIELV+ YSMVSF+PLDLRKE SI+YVL+QIDNCIQ+GEDAD+K+KDFDPEDD+
Sbjct: 213 ALIELVNNYSMVSFIPLDLRKEKSIQYVLAQIDNCIQYGEDADVKVKDFDPEDDE 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500596|gb|AFK38364.1| unknown [Lotus japonicus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/235 (83%), Positives = 225/235 (95%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+VNLDPAAENFDYPVAMD+RELISL+DVMEELGLGPNGGL+YCMEHLE+NLDDWL EE
Sbjct: 33  IHVVNLDPAAENFDYPVAMDVRELISLDDVMEELGLGPNGGLVYCMEHLEENLDDWLDEE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNYLDDDYLVFDCPGQIEL++HVPVL+NFV+HL+ +NFNVC VYLLDSQF+TDVTKFIS
Sbjct: 93  LDNYLDDDYLVFDCPGQIELYSHVPVLKNFVEHLQQKNFNVCVVYLLDSQFMTDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAMVQLELPHVNILSKMDLVTNKK++ D+L+PE  FLLSELNQ MAPQ+AKLNK
Sbjct: 153 GCMASLSAMVQLELPHVNILSKMDLVTNKKDLGDFLDPEPTFLLSELNQRMAPQYAKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
           +LIELV+ YSMVSF+PLDLRKE SI+YVL+QID CIQ+GEDAD+K++DFDPEDD+
Sbjct: 213 ALIELVNNYSMVSFIPLDLRKEKSIQYVLAQIDTCIQYGEDADVKVRDFDPEDDE 267

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489704|gb|ABK96653.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/236 (85%), Positives = 222/236 (94%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           + IVNLDPAAE FDYPVAMDIRELI L+DVMEELGLGPNG L+YCME LEDNLDDWL +E
Sbjct: 33  IQIVNLDPAAEQFDYPVAMDIRELICLDDVMEELGLGPNGALMYCMEELEDNLDDWLTDE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNY+DDDYLVFDCPGQIELF+HVPVLRNFV+HLKS+NFNVC VYLLDSQFITDVTKFIS
Sbjct: 93  LDNYMDDDYLVFDCPGQIELFSHVPVLRNFVEHLKSKNFNVCVVYLLDSQFITDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAMVQLELPHVNILSKMDLVTNK++I  YLNP+ Q LLSELNQ MAPQF KLNK
Sbjct: 153 GCMASLSAMVQLELPHVNILSKMDLVTNKRDIGKYLNPQGQVLLSELNQRMAPQFFKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE 236
           +LI+LVD+YSMVSF+PLDLRKESSI+Y+LSQIDNCIQ+GEDAD+K+KDFDPED D+
Sbjct: 213 ALIDLVDQYSMVSFVPLDLRKESSIQYILSQIDNCIQYGEDADVKVKDFDPEDIDD 268

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131986|ref|XP_002321227.1| predicted protein [Populus trichocarpa] gi|222862000|gb|EEE99542.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/236 (85%), Positives = 223/236 (94%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           ++IVNLDPAAE FDYPVAMDIRELI L+DVMEELGLGPNG L+YCME LEDNLDDWL +E
Sbjct: 33  INIVNLDPAAEQFDYPVAMDIRELICLDDVMEELGLGPNGALMYCMEELEDNLDDWLTDE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNY+DDDYLVFDCPGQIELF+HVPVLRNFV+HLKS+NFNVC VYLLDSQFITDVTKFIS
Sbjct: 93  LDNYMDDDYLVFDCPGQIELFSHVPVLRNFVEHLKSKNFNVCVVYLLDSQFITDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAMVQLELPHVNILSKMDLVTNK++I  YLNP+ Q LLSELNQ MAPQF KLNK
Sbjct: 153 GCMASLSAMVQLELPHVNILSKMDLVTNKRDIGKYLNPQGQVLLSELNQRMAPQFFKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE 236
           +LI+LVD+YSMVSF+PLDLRKESSI+Y+LSQIDNCIQ+GEDAD+K+KDFDPED D+
Sbjct: 213 ALIDLVDQYSMVSFVPLDLRKESSIQYILSQIDNCIQYGEDADVKVKDFDPEDIDD 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493224|gb|AFK34678.1| unknown [Lotus japonicus]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/235 (83%), Positives = 225/235 (95%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+VNLDPAAENFDYPVAMD+RELISL+DVMEELGLGPNG L+YCMEHLE+NLDDWL EE
Sbjct: 33  IHVVNLDPAAENFDYPVAMDVRELISLDDVMEELGLGPNGSLVYCMEHLEENLDDWLDEE 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           LDNYLDDDYLVFDCPGQIEL++HVPVL+NFV+HL+ +NFNVC VYLLDSQF+TDVTKFIS
Sbjct: 93  LDNYLDDDYLVFDCPGQIELYSHVPVLKNFVEHLQQKNFNVCVVYLLDSQFMTDVTKFIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAMVQLELPHVNILSKMDLVTNKK+++D+L+PE  FLLSELNQ MAPQ+AKLNK
Sbjct: 153 GCMASLSAMVQLELPHVNILSKMDLVTNKKDLDDFLDPEPTFLLSELNQRMAPQYAKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
           +LIELV+ YSMVSF+PLDLRKE SI+YVL+QID CIQ+GEDAD+K++DFDPEDD+
Sbjct: 213 ALIELVNNYSMVSFIPLDLRKEKSIQYVLAQIDTCIQYGEDADVKVRDFDPEDDE 267

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108710748|gb|ABF98543.1| expressed protein [Oryza sativa Japonica Group] gi|215769078|dbj|BAH01307.1| unnamed protein product [Oryza sativa Japonica Group] gi|218193640|gb|EEC76067.1| hypothetical protein OsI_13279 [Oryza sativa Indica Group] gi|222625678|gb|EEE59810.1| hypothetical protein OsJ_12343 [Oryza sativa Japonica Group]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/234 (82%), Positives = 223/234 (95%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+VNLDPAAE+F YPV+ DIRELISL+DVMEELG+GPNGGLIYCMEHLEDNLDDWL E+
Sbjct: 33  IHMVNLDPAAEHFSYPVSTDIRELISLDDVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQ 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           L+ YLDDDYLVFDCPGQIELFTHVPVLRNFV+HLK +NFNVCAVYLLDSQF++DVTK+IS
Sbjct: 93  LEGYLDDDYLVFDCPGQIELFTHVPVLRNFVEHLKRKNFNVCAVYLLDSQFVSDVTKYIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAM+QLELPH+NILSKMDLV+NKK++E+YLNPE+Q LLS+LN+ MAP F KLNK
Sbjct: 153 GCMASLSAMIQLELPHINILSKMDLVSNKKDVEEYLNPEAQVLLSQLNRQMAPNFGKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDD 234
           SL ELVD+YSMV+F+PLDLRKESSI+YVLS IDNCIQ+GEDAD+K++DFDPE+D
Sbjct: 213 SLAELVDDYSMVNFIPLDLRKESSIQYVLSHIDNCIQYGEDADVKVRDFDPEED 266

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357117746|ref|XP_003560623.1| PREDICTED: GPN-loop GTPase 3-like [Brachypodium distachyon]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/234 (81%), Positives = 224/234 (95%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +H+VNLDPAAE+F YPVA DIRELISL+DVMEELG+GPNGGLIYCMEHLEDNLDDWL E+
Sbjct: 33  IHMVNLDPAAEHFSYPVATDIRELISLDDVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQ 92

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           L+NYLDDDYLVFDCPGQIELFTHVPVLRNFV+HLK +NF VCAVYLLDSQF++DVTK+IS
Sbjct: 93  LENYLDDDYLVFDCPGQIELFTHVPVLRNFVEHLKRKNFTVCAVYLLDSQFVSDVTKYIS 152

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           GCMASLSAM+QLELPH+NILSKMDLV+NKK++E+YLNPE+Q LLS+LN+HMAP+F KLNK
Sbjct: 153 GCMASLSAMIQLELPHINILSKMDLVSNKKDVEEYLNPEAQVLLSQLNRHMAPRFGKLNK 212

Query: 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDD 234
           +L ELVD+YSMV+F+PLDLRKESSI+YVLS IDNCIQ+GEDAD++++DF PE+D
Sbjct: 213 ALAELVDDYSMVNFIPLDLRKESSIQYVLSCIDNCIQYGEDADVRVRDFIPEED 266

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2135793	271	AT4G12790 [Arabidopsis thalian	0.995	0.867	0.723	1.5e-90
DICTYBASE|DDB_G0285197	285	gpn3 "GPN-loop GTPase 3" [Dict	0.991	0.821	0.471	2.5e-58
POMBASE|SPAC4D7.12c	276	fet5 "ATP binding protein Fet5	0.987	0.844	0.487	2.5e-58
CGD|CAL0002280	273	orf19.3130 [Candida albicans (	0.966	0.835	0.5	1.4e-57
UNIPROTKB|Q5A0W6	273	CaO19.10642 "GPN-loop GTPase 3	0.966	0.835	0.5	1.4e-57
SGD|S000004233	272	GPN3 "Putative GTPase with a r	0.940	0.816	0.495	3.6e-57
ZFIN|ZDB-GENE-040724-141	285	gpn3 "GPN-loop GTPase 3" [Dani	0.974	0.807	0.489	1.2e-56
MGI|MGI:1289326	284	Gpn3 "GPN-loop GTPase 3" [Mus	0.974	0.809	0.485	3.7e-55
RGD|1303034	284	Gpn3 "GPN-loop GTPase 3" [Ratt	0.974	0.809	0.485	3.7e-55
UNIPROTKB|E1C8Z1	284	GPN3 "Uncharacterized protein"	0.974	0.809	0.481	7.8e-55

TAIR|locus:2135793 AT4G12790 [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 170/235 (72%), Positives = 199/235 (84%)

Query:     1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXX 60
             MH+VNLDPAAE F+YPVAMDIRELISLEDVME+L LGPNG L+YCME+LED+L DW    
Sbjct:    33 MHVVNLDPAAEIFNYPVAMDIRELISLEDVMEDLKLGPNGALMYCMEYLEDSLHDWVDEE 92

Query:    61 XXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
                       +FDCPGQIELFTHVPVL+NFV+HLK +NFNVC VYLLDSQFITDVTKFIS
Sbjct:    93 LENYRDDDYLIFDCPGQIELFTHVPVLKNFVEHLKQKNFNVCVVYLLDSQFITDVTKFIS 152

Query:   121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
             GCM+SL+AM+QLELPHVNILSKMDL+ +K  I+DYLNPE + LL+ELN+ M PQ+AKLNK
Sbjct:   153 GCMSSLAAMIQLELPHVNILSKMDLLQDKSNIDDYLNPEPRTLLAELNKRMGPQYAKLNK 212

Query:   181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
             +LIE+V EY MV+F+P++LRKE SI+YVLSQID CIQ+GEDAD+ IKD D   DD
Sbjct:   213 ALIEMVGEYGMVNFIPINLRKEKSIQYVLSQIDVCIQFGEDADVNIKDDDDFSDD 267

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285197 gpn3 "GPN-loop GTPase 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 114/242 (47%), Positives = 174/242 (71%)

Query:     1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXX 60
             +HIVNLDPAAE F+YPV++DI+ L+++++VM+EL  GPNGGL+Y ME+L +N+D W    
Sbjct:    34 VHIVNLDPAAEVFEYPVSVDIKNLVTVDEVMDELHYGPNGGLVYAMEYLIENMD-WLTDE 92

Query:    61 XXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
                       + DCPGQIEL++H+PV+R  VDHL+   ++VC+V+L+DSQFI D  KFIS
Sbjct:    93 LGDYEDDYL-IIDCPGQIELYSHIPVMRILVDHLQQIGYSVCSVFLVDSQFILDNCKFIS 151

Query:   121 GCMASLSAMVQLELPHVNILSKMDLVTNK---KEIEDYLNPESQFLLSELNQHMAPQFAK 177
             G +  LSAMV+LE+PH+N+L+K+D++      KEIE +L+ E Q L+ ELN     ++ +
Sbjct:   152 GALMCLSAMVRLEVPHINVLTKIDVLKTSDQYKEIEKFLDLEVQNLVEELNLETHDRYHR 211

Query:   178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK---IKDFDPEDD 234
             +NK++  L++++S+V F+PLD+  + S+  +L  IDN IQ+GED + K   +++ D +DD
Sbjct:   212 MNKAIGSLLEDFSLVGFVPLDITDQESLNVLLQHIDNSIQYGEDLEPKEPPLENDDDDDD 271

Query:   235 DE 236
             DE
Sbjct:   272 DE 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

POMBASE|SPAC4D7.12c fet5 "ATP binding protein Fet5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 119/244 (48%), Positives = 170/244 (69%)

Query:     2 HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXX 61
             H+VNLDPAAENF++   +DIR+LIS++DVMEEL  GPNGGLIYC E L +NLD W     
Sbjct:    35 HLVNLDPAAENFEWEPTVDIRDLISIDDVMEELDYGPNGGLIYCFEFLMENLD-WLNEEI 93

Query:    62 XXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFIS 120
                      +FD PGQIEL+THVP+L   + HL+ + NF  CAVYLL+SQF+ D TKF +
Sbjct:    94 GDYDEDYL-IFDMPGQIELYTHVPILPALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFA 152

Query:   121 GCMASLSAMVQLELPHVNILSKMDLVTN-----KKEIEDYLNPESQFLLSELNQHMAPQF 175
             G ++++SAMV +E+PH+N+LSKMDL+ +     K E++ +LN +   L  E+N+   P+F
Sbjct:   153 GVLSAMSAMVMMEVPHINLLSKMDLLKDNNNITKAELKRFLNTDPLLLTGEINETTNPKF 212

Query:   176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKD-FDPED- 233
              +LN+ +++L+D+++MV+F+PL+   E S+  VLS ID+  QW ED + K  D F+ +D 
Sbjct:   213 HELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYIDDATQWYEDQEPKDPDRFEADDL 272

Query:   234 -DDE 236
              DDE
Sbjct:   273 EDDE 276

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002280 orf19.3130 [Candida albicans (taxid:5476)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 120/240 (50%), Positives = 167/240 (69%)

Query:     2 HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXX 61
             HIVNLDPAA   +Y   +D+++LISL+DVMEE+ LGPNGGL+YC E L +NLD W     
Sbjct:    35 HIVNLDPAANPTEYEFTIDVKDLISLQDVMEEMELGPNGGLVYCFEFLLNNLD-WLDEEI 93

Query:    62 XXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFIS 120
                      +FDCPGQIEL+TH+PVL   V HL+ S NFN+CA YLL++ FI D +KF S
Sbjct:    94 GDYNDEYL-IFDCPGQIELYTHIPVLPTIVRHLQTSLNFNLCATYLLEAPFIIDNSKFFS 152

Query:   121 GCMASLSAMVQLELPHVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAK 177
             G ++++SAM+ LELPH+NILSK+DLV +   KK+++ +LNP+   LL++   ++ P+FAK
Sbjct:   153 GALSAMSAMILLELPHINILSKIDLVKDEYSKKQLKKFLNPDP-LLLAKQEDYINPKFAK 211

Query:   178 LNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE 236
             L +S+  LVD++ MV F+PLD  K+S S+  +LS ID+  QW E  + K    +P D+ E
Sbjct:   212 LTQSIANLVDDFGMVQFLPLDCSKDSRSVETILSYIDDVTQWSEAQEPK----EPHDEVE 267

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A0W6 CaO19.10642 "GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642" [Candida albicans SC5314 (taxid:237561)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 120/240 (50%), Positives = 167/240 (69%)

Query:     2 HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXX 61
             HIVNLDPAA   +Y   +D+++LISL+DVMEE+ LGPNGGL+YC E L +NLD W     
Sbjct:    35 HIVNLDPAANPTEYEFTIDVKDLISLQDVMEEMELGPNGGLVYCFEFLLNNLD-WLDEEI 93

Query:    62 XXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFIS 120
                      +FDCPGQIEL+TH+PVL   V HL+ S NFN+CA YLL++ FI D +KF S
Sbjct:    94 GDYNDEYL-IFDCPGQIELYTHIPVLPTIVRHLQTSLNFNLCATYLLEAPFIIDNSKFFS 152

Query:   121 GCMASLSAMVQLELPHVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAK 177
             G ++++SAM+ LELPH+NILSK+DLV +   KK+++ +LNP+   LL++   ++ P+FAK
Sbjct:   153 GALSAMSAMILLELPHINILSKIDLVKDEYSKKQLKKFLNPDP-LLLAKQEDYINPKFAK 211

Query:   178 LNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCIQWGEDADLKIKDFDPEDDDE 236
             L +S+  LVD++ MV F+PLD  K+S S+  +LS ID+  QW E  + K    +P D+ E
Sbjct:   212 LTQSIANLVDDFGMVQFLPLDCSKDSRSVETILSYIDDVTQWSEAQEPK----EPHDEVE 267

GO:0008150 "biological_process" evidence=ND

SGD|S000004233 GPN3 "Putative GTPase with a role in biogenesis of RNA pol II and polIII" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 114/230 (49%), Positives = 157/230 (68%)

Query:     2 HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXX 61
             HIVNLDPAAE   Y   +DIR+LISL+DVMEE+ LGPNG LIYC E+L  NLD W     
Sbjct:    35 HIVNLDPAAEATKYEFTIDIRDLISLDDVMEEMDLGPNGALIYCFEYLLKNLD-WLDEEI 93

Query:    62 XXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 120
                      +FDCPGQIEL+TH+PVL N V HL  + NFN+CA YLL++ F+ D +KF S
Sbjct:    94 GDFNDEYL-IFDCPGQIELYTHIPVLPNIVRHLTQQLNFNLCATYLLEAPFVIDSSKFFS 152

Query:   121 GCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSE--LNQHMAPQF 175
             G ++++SAM+ LELPH+N+LSK+DL+    NKK+++ +LNP++  L+    +NQ   P+F
Sbjct:   153 GALSAMSAMILLELPHINVLSKLDLIKGDINKKKLKRFLNPDAMLLMETEGMNQASNPKF 212

Query:   176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225
              +LN+ +  LVD++ MV F+PL+     SI  +LS +D+  QW E  + K
Sbjct:   213 LRLNQCIANLVDDFGMVQFLPLESNNPDSIETILSYVDDITQWAEGQEQK 262

GO:0005525 "GTP binding" evidence=IEA;ISA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044376 "RNA polymerase II complex localization to nucleus" evidence=IMP

GO:1990022 "RNA polymerase III complex localization to nucleus" evidence=IMP

GO:0005048 "signal sequence binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040724-141 gpn3 "GPN-loop GTPase 3" [Danio rerio (taxid:7955)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 118/241 (48%), Positives = 166/241 (68%)

Query:     1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEE--LGLGPNGGLIYCMEHLEDNLDDWXX 58
             + +VNLDPAAE+F+YPV  DIRELI ++DVME+  L  GPNGGLI+CME+  +N D W  
Sbjct:    34 VQVVNLDPAAEHFEYPVIADIRELIQVDDVMEDDSLRFGPNGGLIFCMEYFSNNFD-WLE 92

Query:    59 XXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 118
                         +FDCPGQIEL+TH+PV++  V+ L+   F VC V+L+DSQF+ +  KF
Sbjct:    93 ESLGHVEDDYI-LFDCPGQIELYTHLPVMKQLVEQLQQWEFRVCGVFLVDSQFMVETFKF 151

Query:   119 ISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHM-APQF 175
             ISG MA+LSAMV LE+P VNI++KMDL++ K  KEIE YL+P+   ++ + +  + + +F
Sbjct:   152 ISGVMAALSAMVMLEIPQVNIMTKMDLLSPKAKKEIEKYLDPDMYSMMEDNSVALRSKKF 211

Query:   176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
             +KL K++  L+D+YSMV F+P D   E  I  VL  ID  IQ+GED ++K    +P++ D
Sbjct:   212 SKLTKAICGLIDDYSMVRFLPFDRTDEEGINIVLQHIDFSIQYGEDLEVK----EPKEVD 267

Query:   236 E 236
             E
Sbjct:   268 E 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1289326 Gpn3 "GPN-loop GTPase 3" [Mus musculus (taxid:10090)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 117/241 (48%), Positives = 161/241 (66%)

Query:     1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEE--LGLGPNGGLIYCMEHLEDNLDDWXX 58
             + +VNLDPAAE+F+YPV  DIRELI ++DVME+  L  GPNGGL++CME+  +N D W  
Sbjct:    34 VQVVNLDPAAEHFNYPVMADIRELIEVDDVMEDESLRFGPNGGLVFCMEYFANNFD-WLE 92

Query:    59 XXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 118
                         +FDCPGQIEL+TH+PV++  V  L+   F VC V+L+DSQF+ +  KF
Sbjct:    93 NCLGHVEDDYI-LFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKF 151

Query:   119 ISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQ-F 175
             ISG +A+LSAMV LE+P VNI++KMDL++ K  KEIE +L+P+   L+ +    +  Q F
Sbjct:   152 ISGILAALSAMVSLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLIDDSTGDLRSQKF 211

Query:   176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
              KL K++  LVD+YSMV F+P D   E S+  VL  ID  IQ+GED + K    +P + +
Sbjct:   212 KKLTKAVCGLVDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFK----EPREHE 267

Query:   236 E 236
             E
Sbjct:   268 E 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1303034 Gpn3 "GPN-loop GTPase 3" [Rattus norvegicus (taxid:10116)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 117/241 (48%), Positives = 161/241 (66%)

Query:     1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEE--LGLGPNGGLIYCMEHLEDNLDDWXX 58
             + +VNLDPAAE+F+YPV  DIRELI ++DVME+  L  GPNGGL++CME+  +N D W  
Sbjct:    34 VQVVNLDPAAEHFNYPVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFD-WLE 92

Query:    59 XXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 118
                         +FDCPGQIEL+TH+PV++  V  L+   F VC V+L+DSQF+ +  KF
Sbjct:    93 NCLGHVEDDYI-LFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKF 151

Query:   119 ISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQ-F 175
             ISG +A+LSAM+ LE+P VNI++KMDL++ K  KEIE +L+P+   LL +    +  Q F
Sbjct:   152 ISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTGDLRSQKF 211

Query:   176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235
              KL K +  LVD+YSMV F+P D   E S+  VL  ID  IQ+GED + K    +P++ +
Sbjct:   212 KKLTKPVCGLVDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFK----EPKEHE 267

Query:   236 E 236
             E
Sbjct:   268 E 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|E1C8Z1 GPN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 115/239 (48%), Positives = 160/239 (66%)

Query:     1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEE--LGLGPNGGLIYCMEHLEDNLDDWXX 58
             + +VNLDPAAE F YPV  DIRELI ++DVME+  L  GPNGGL++CME+  +N + W  
Sbjct:    34 VQVVNLDPAAEFFSYPVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFN-WLE 92

Query:    59 XXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 118
                         +FDCPGQIEL+TH+PV++  V+ L+   F VC V+L+DSQF+ +  KF
Sbjct:    93 ESLGHVEDDYI-LFDCPGQIELYTHLPVMKQLVEQLQQWEFRVCGVFLVDSQFMVESFKF 151

Query:   119 ISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSE-LNQHMAPQF 175
             ISG +A+LSAM+ LE+P +NI++KMDL++ K  KEIE YL+P+   ++ +  N   +  F
Sbjct:   152 ISGILAALSAMISLEIPQINIMTKMDLLSKKAKKEIEKYLDPDMYSMIEDSTNILKSKMF 211

Query:   176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKI-KDFDPED 233
              KL KS+  L+D+Y MV F+P D   E SI  VL  ID  IQ+GED + K  K+++ ED
Sbjct:   212 KKLTKSICGLIDDYGMVRFLPFDRSDEESINIVLQHIDTTIQYGEDLEFKEPKEYE-ED 269

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NK8	GPN3_DICDI	No assigned EC number	0.5131	0.9449	0.7824	yes	no
Q5A0W6	GPN3_CANAL	No assigned EC number	0.5291	0.9661	0.8351	N/A	no
Q6FSS0	GPN3_CANGA	No assigned EC number	0.5219	0.9406	0.8191	yes	no
Q28I42	GPN3_XENTR	No assigned EC number	0.4979	0.9915	0.8210	yes	no
Q6CQA6	GPN3_KLULA	No assigned EC number	0.5438	0.9406	0.8191	yes	no
O14443	GPN3_SCHPO	No assigned EC number	0.5204	0.9872	0.8442	yes	no
Q06543	GPN3_YEAST	No assigned EC number	0.5217	0.9406	0.8161	yes	no
Q9UHW5	GPN3_HUMAN	No assigned EC number	0.5086	0.9449	0.7852	yes	no
Q750Q9	GPN3_ASHGO	No assigned EC number	0.5219	0.9406	0.8191	yes	no
Q6BI59	GPN3_DEBHA	No assigned EC number	0.5580	0.9194	0.7919	yes	no
Q9D3W4	GPN3_MOUSE	No assigned EC number	0.5217	0.9449	0.7852	yes	no
Q6ZM63	GPN3_DANRE	No assigned EC number	0.5145	0.9745	0.8070	yes	no
Q6CBB5	GPN3_YARLI	No assigned EC number	0.4866	0.9237	0.8044	yes	no
Q4PF70	GPN3_USTMA	No assigned EC number	0.5040	0.9745	0.8185	N/A	no
P0CN94	GPN3_CRYNJ	No assigned EC number	0.5105	0.9661	0.7944	yes	no
Q6R518	GPN3_RAT	No assigned EC number	0.5217	0.9449	0.7852	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV1116	hypothetical protein (269 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0004003701	hypothetical protein (230 aa)			•	•					0.534
	estExt_fgenesh4_pm.C_LG_VI0124	hypothetical protein (284 aa)			•	•					0.511
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.444
	grail3.3692000102	hypothetical protein (121 aa)			•						0.439
	estExt_fgenesh4_pm.C_LG_VIII0372	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.425
	estExt_Genewise1_v1.C_LG_X0940	SubName- Full=Putative uncharacterized protein; (159 aa)			•						0.413
	estExt_fgenesh4_pm.C_LG_XVIII0351	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.402
	estExt_Genewise1_v1.C_LG_VI0968	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.402
	gw1.III.419.1	hypothetical protein (133 aa)			•						0.401
	gw1.13170.2.1	hypothetical protein (131 aa)			•						0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	2e-78
PRK13768	253	PRK13768, PRK13768, GTPase; Provisional	1e-39
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-14

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score =  235 bits (601), Expect = 2e-78
 Identities = 92/219 (42%), Positives = 139/219 (63%), Gaps = 11/219 (5%)

Query: 1   MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEE 60
           +++VNLDPAAEN  Y   +DIRELI++ DVME+ GLGPNG L   M+ L   L DWL EE
Sbjct: 27  VYVVNLDPAAENLPYEADIDIRELITVADVMEDDGLGPNGALTVAMDFLRITL-DWLLEE 85

Query: 61  LDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 120
           L+   +DDY +FD PGQIELFTH   L   V+ L++ +  + AVYL+D++ +TD + F S
Sbjct: 86  LEY--EDDYYLFDTPGQIELFTHWESLARGVEALEA-SLRLGAVYLVDTRRLTDPSDFFS 142

Query: 121 GCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180
           G + +LS M++L LP V  L+K DL++ +  ++ + +P+   LL EL        +KLN+
Sbjct: 143 GLLYALSIMLRLGLPFVVALNKFDLLSLEFALKWFTDPDDLQLLLEL------DPSKLNE 196

Query: 181 SLIELVDEYSMV-SFMPLDLRKESSIRYVLSQIDNCIQW 218
           ++ E +D + +V  F+P       S+  +L+ ID  +Q+
Sbjct: 197 AIREALDLFYLVPRFLPDARETGESMEDLLTLIDEALQY 235

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional

 Score =  136 bits (346), Expect = 1e-39
 Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 9/190 (4%)

Query: 3   IVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELD 62
           IVNLDPA E   Y    D+R+ ++  ++M++ GLGPNG LI  ++ L    D+ + EE++
Sbjct: 35  IVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLLTKADE-IKEEIE 93

Query: 63  NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 122
             LD DY++ D PGQ+ELF      R  V+ L S +     V+L+D+      + F+S  
Sbjct: 94  -SLDADYVLVDTPGQMELFAFRESGRKLVERL-SGSSKSVVVFLIDAVLAKTPSDFVSLL 151

Query: 123 MASLSAMVQLELPHVNILSKMDLVTNK--KEIEDYL-NPESQFLLSELNQHMAPQFAKLN 179
           + +LS  ++L LP + +L+K DL++ +  + I  +L +PE   LL EL          L+
Sbjct: 152 LLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEY--LLEELKLE-KGLQGLLS 208

Query: 180 KSLIELVDEY 189
             L+  ++E 
Sbjct: 209 LELLRALEET 218

Length = 253

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 46/188 (24%), Positives = 62/188 (32%), Gaps = 18/188 (9%)

Query: 2   HIVNLDPAAENFDYP-----VAMDIRELISLEDVMEELGLGPNGGLIYC----MEHLEDN 52
            I NLDPA     Y         D         +  E   G NG LI       E  ++ 
Sbjct: 37  TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDEL 96

Query: 53  LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 112
            ++WL EEL     DD  +     +I+LF         ++ L         V L+ +   
Sbjct: 97  TEEWL-EELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNR-----EVVLLVLAPKA 150

Query: 113 TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDY-LNPESQFLLSELNQHM 171
                     +   SA   L  P+VN L K  L    +EIE   L  E + L    N   
Sbjct: 151 VLPEVANPALLE-TSAK-SLTGPNVNELFKELLRKLLEEIEKLVLKNELRQLDRLNNPIE 208

Query: 172 APQFAKLN 179
               A  N
Sbjct: 209 QAALASFN 216

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG1534	273	consensus Putative transcription factor FET5 [Tran	100.0
KOG1533	290	consensus Predicted GTPase [General function predi	100.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	100.0
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	100.0
PRK13768	253	GTPase; Provisional	100.0
COG1159	298	Era GTPase [General function prediction only]	99.0
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.83
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.69
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.66
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.66
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.64
PRK12298	390	obgE GTPase CgtA; Reviewed	98.6
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.6
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.59
PRK00089	292	era GTPase Era; Reviewed	98.56
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.56
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.52
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.5
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.5
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.48
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.46
PRK12299	335	obgE GTPase CgtA; Reviewed	98.42
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.41
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.4
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.39
PRK12297	424	obgE GTPase CgtA; Reviewed	98.37
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.37
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.36
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.35
cd00881	189	GTP_translation_factor GTP translation factor fami	98.33
COG1100	219	GTPase SAR1 and related small G proteins [General	98.33
PRK15494	339	era GTPase Era; Provisional	98.33
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.33
CHL00071	409	tufA elongation factor Tu	98.31
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.31
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.3
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.3
PRK12735	396	elongation factor Tu; Reviewed	98.28
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.28
PRK12296	500	obgE GTPase CgtA; Reviewed	98.26
PRK12736	394	elongation factor Tu; Reviewed	98.25
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.24
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.23
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.22
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.22
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.21
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.21
PRK00049	396	elongation factor Tu; Reviewed	98.19
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.18
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.18
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.16
PRK09866	741	hypothetical protein; Provisional	98.15
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.14
PLN03127	447	Elongation factor Tu; Provisional	98.14
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.12
PRK00093	435	GTP-binding protein Der; Reviewed	98.11
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.11
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.1
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.09
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.09
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.08
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.08
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.08
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.05
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.05
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.05
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.04
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.03
COG0218	200	Predicted GTPase [General function prediction only	98.03
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.03
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.03
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.02
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.01
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.01
PRK03003	472	GTP-binding protein Der; Reviewed	98.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.0
PTZ00141	446	elongation factor 1- alpha; Provisional	97.99
PRK14845	1049	translation initiation factor IF-2; Provisional	97.99
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.98
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.96
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.95
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.95
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	97.95
PRK12317	425	elongation factor 1-alpha; Reviewed	97.94
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.94
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.93
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.93
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.92
PLN00043	447	elongation factor 1-alpha; Provisional	97.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.92
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.91
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.9
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.89
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.89
PRK04213	201	GTP-binding protein; Provisional	97.88
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.88
PRK11058	426	GTPase HflX; Provisional	97.87
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.86
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.86
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.85
PLN03126	478	Elongation factor Tu; Provisional	97.83
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.82
COG1160	444	Predicted GTPases [General function prediction onl	97.81
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.81
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.8
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.8
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.79
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.78
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.78
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.77
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	97.77
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.76
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.75
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.75
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.75
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.74
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.73
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.73
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.73
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.72
PRK04004	586	translation initiation factor IF-2; Validated	97.72
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.7
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.7
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.69
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	97.68
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.68
PRK00093	435	GTP-binding protein Der; Reviewed	97.68
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.67
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	97.67
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.66
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.65
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.65
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.64
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	97.64
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	97.62
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.6
PTZ00099	176	rab6; Provisional	97.6
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.6
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.6
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.6
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.59
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.58
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.57
PLN00223	181	ADP-ribosylation factor; Provisional	97.55
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.54
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.53
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.53
PLN03118	211	Rab family protein; Provisional	97.52
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.51
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.51
PRK05433	600	GTP-binding protein LepA; Provisional	97.5
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	97.5
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.47
PTZ00133	182	ADP-ribosylation factor; Provisional	97.44
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.44
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.44
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.43
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.42
CHL00189	742	infB translation initiation factor 2; Provisional	97.41
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.4
COG0536	369	Obg Predicted GTPase [General function prediction	97.39
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.39
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.38
COG1160	444	Predicted GTPases [General function prediction onl	97.37
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.37
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.36
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.35
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.33
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.33
PLN03110	216	Rab GTPase; Provisional	97.31
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.29
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.28
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.28
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	97.27
PRK03003	472	GTP-binding protein Der; Reviewed	97.24
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.23
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.23
PRK05306	787	infB translation initiation factor IF-2; Validated	97.22
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.21
PTZ00369	189	Ras-like protein; Provisional	97.2
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.2
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.19
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.19
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.16
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.16
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	97.16
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.15
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.12
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.07
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.05
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.05
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.05
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.04
PRK10218	607	GTP-binding protein; Provisional	97.04
PRK12739	691	elongation factor G; Reviewed	97.03
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.03
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.0
PRK00007	693	elongation factor G; Reviewed	97.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	96.95
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	96.93
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	96.92
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.9
PF09439	181	SRPRB: Signal recognition particle receptor beta s	96.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	96.89
PRK12740	668	elongation factor G; Reviewed	96.88
KOG0462	650	consensus Elongation factor-type GTP-binding prote	96.85
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.84
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	96.82
KOG0090	238	consensus Signal recognition particle receptor, be	96.81
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.81
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.79
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	96.75
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	96.75
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	96.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	96.72
PLN03108	210	Rab family protein; Provisional	96.7
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	96.65
COG2229	187	Predicted GTPase [General function prediction only	96.61
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	96.61
KOG0461	522	consensus Selenocysteine-specific elongation facto	96.61
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	96.57
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	96.54
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.54
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	96.53
COG2262	411	HflX GTPases [General function prediction only]	96.42
PRK13351	687	elongation factor G; Reviewed	96.41
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	96.28
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	96.27
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	96.26
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	96.23
COG0486	454	ThdF Predicted GTPase [General function prediction	96.17
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.09
PRK12289	352	GTPase RsgA; Reviewed	96.08
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	96.04
KOG0460	449	consensus Mitochondrial translation elongation fac	95.99
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	95.95
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	95.94
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.9
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	95.86
PRK00098	298	GTPase RsgA; Reviewed	95.81
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	95.79
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	95.79
PRK00741	526	prfC peptide chain release factor 3; Provisional	95.76
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	95.71
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	95.62
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	95.61
PRK13796	365	GTPase YqeH; Provisional	95.53
TIGR00503	527	prfC peptide chain release factor 3. This translat	95.5
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	95.5
COG1084	346	Predicted GTPase [General function prediction only	95.48
PRK01889	356	GTPase RsgA; Reviewed	95.2
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	95.19
PTZ00416	836	elongation factor 2; Provisional	95.17
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	95.07
COG1100	219	GTPase SAR1 and related small G proteins [General	94.89
PRK07560	731	elongation factor EF-2; Reviewed	94.84
PRK12288	347	GTPase RsgA; Reviewed	94.71
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	94.7
PLN00116	843	translation elongation factor EF-2 subunit; Provis	94.32
KOG1145	683	consensus Mitochondrial translation initiation fac	94.28
cd03112	158	CobW_like The function of this protein family is u	93.51
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	93.39
TIGR00101	199	ureG urease accessory protein UreG. This model rep	93.17
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	93.13
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	92.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	92.88
COG5258	527	GTPBP1 GTPase [General function prediction only]	92.73
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	92.66
COG5019	373	CDC3 Septin family protein [Cell division and chro	92.56
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	92.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	92.23
cd03110	179	Fer4_NifH_child This protein family's function is	92.09
KOG0466	466	consensus Translation initiation factor 2, gamma s	91.99
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	91.51
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	91.36
cd03114	148	ArgK-like The function of this protein family is u	90.92
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	90.8
KOG3887	347	consensus Predicted small GTPase involved in nucle	90.63
cd02036	179	MinD Bacterial cell division requires the formatio	90.52
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	90.23
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	89.2
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	89.2
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	88.86
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	88.54
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	88.49
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	88.04
KOG0395	196	consensus Ras-related GTPase [General function pre	87.92
cd03115	173	SRP The signal recognition particle (SRP) mediates	87.41
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	87.36
COG1217	603	TypA Predicted membrane GTPase involved in stress	86.37
COG1161	322	Predicted GTPases [General function prediction onl	86.21
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	86.16
CHL00175	281	minD septum-site determining protein; Validated	85.72
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	85.55
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	85.02
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	84.4
PRK10818	270	cell division inhibitor MinD; Provisional	84.27
KOG0465	721	consensus Mitochondrial elongation factor [Transla	84.17
KOG2486	320	consensus Predicted GTPase [General function predi	84.07
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	83.81
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	83.61
COG1192	259	Soj ATPases involved in chromosome partitioning [C	83.46
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	83.45
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	83.05
PLN00023	334	GTP-binding protein; Provisional	83.05
PHA02519	387	plasmid partition protein SopA; Reviewed	82.62
PRK10416	318	signal recognition particle-docking protein FtsY;	82.39
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	82.32
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	81.69
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	80.86
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	80.7
PRK13869	405	plasmid-partitioning protein RepA; Provisional	80.69
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	80.46
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	80.08
PRK09602	396	translation-associated GTPase; Reviewed	80.01

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=100.00  E-value=9.8e-78  Score=512.32  Aligned_cols=232  Identities=62%  Similarity=1.109  Sum_probs=217.0

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL   80 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl   80 (236)
                      +++||||||+|.+.|++.+||||+|+++||||++.|||||||+|||||+.+|+ +|+.++++.+ +++|+||||||||||
T Consensus        34 ~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~Nl-dwL~~~~Gd~-eddylifDcPGQIEL  111 (273)
T KOG1534|consen   34 VHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENL-DWLEEEIGDV-EDDYLIFDCPGQIEL  111 (273)
T ss_pred             eEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHH-HHHHhhccCc-cCCEEEEeCCCeeEE
Confidence            47999999999999999999999999999999999999999999999999999 9999999988 999999999999999


Q ss_pred             eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc--hhHhhhhccc
Q 026584           81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN--KKEIEDYLNP  158 (236)
Q Consensus        81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~--~~~l~~~l~~  158 (236)
                      |||.+.+++|++.|+++++|+|+|||+||++..|..+|+|++|.|+|+|+++++|||||+||+||++.  ++++++|+++
T Consensus       112 ytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~  191 (273)
T KOG1534|consen  112 YTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNP  191 (273)
T ss_pred             eecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCC
Confidence            99999999999999889999999999999999999999999999999999999999999999999985  3478999998


Q ss_pred             cHHHHHH--HhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCCCCCCCCCCCC
Q 026584          159 ESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD  235 (236)
Q Consensus       159 ~~~~l~~--~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~~~~~~~~~~~  235 (236)
                      +...+.+  +++. ..+||++|+++|++++++|++++|+|++..+++||..+++.||.+.|||||+||++||+++.++.
T Consensus       192 d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E~k~~d~~e~d~~  269 (273)
T KOG1534|consen  192 DEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLEPKEPDEDEDDDS  269 (273)
T ss_pred             chhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccccCccCCCccccccc
Confidence            8766653  3333 33799999999999999999999999999999999999999999999999999999976555543

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=100.00  E-value=2.5e-74  Score=497.75  Aligned_cols=217  Identities=44%  Similarity=0.787  Sum_probs=204.2

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL   80 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl   80 (236)
                      +++|||||||+++||+|++|||++|+++|||+++|||||||++||||+|+.|+ +|+.++|+.. .++|+|||||||+||
T Consensus        33 ~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVEL  110 (290)
T KOG1533|consen   33 VAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANI-DWLLEKLKPL-TDHYVLFDCPGQVEL  110 (290)
T ss_pred             eEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEE
Confidence            58999999999999999999999999999999999999999999999999999 9999999997 889999999999999


Q ss_pred             eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHh---hhhcc
Q 026584           81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEI---EDYLN  157 (236)
Q Consensus        81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l---~~~l~  157 (236)
                      ||||+++++|+++|.++++|+|+|+|+|+.+|++|++|+|++|+|+++|+++++||||||||+||++..+++   .+|++
T Consensus       111 ft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~~~ygkl~f~ld~yt  190 (290)
T KOG1533|consen  111 FTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLLKKYGKLPFNLDFYT  190 (290)
T ss_pred             EeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHHHhhcccccccchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999987655   34555


Q ss_pred             --ccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          158 --PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       158 --~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                        .|.++|...+.. +..+||+||+++||++|+||++++|.|+++.|++||.+|++.||+|+||.
T Consensus       191 ~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkAnGy~  255 (290)
T KOG1533|consen  191 EVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKANGYI  255 (290)
T ss_pred             hhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhccCeE
Confidence              377788777754 45679999999999999999999999999999999999999999999973

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=100.00  E-value=1e-67  Score=463.61  Aligned_cols=210  Identities=50%  Similarity=0.872  Sum_probs=165.8

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL   80 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl   80 (236)
                      +++||||||++++||+|+|||||+|+++|||+++|||||||+++|||++.+|+ +|+.++++.. +++|+|||||||+|+
T Consensus        27 ~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~-d~l~~~i~~~-~~~y~l~DtPGQiEl  104 (238)
T PF03029_consen   27 VYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI-DWLDEEIEKY-EDDYLLFDTPGQIEL  104 (238)
T ss_dssp             EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-HHHHHHHHHH-H-SEEEEE--SSHHH
T ss_pred             ceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-HHHHHHHhhc-CCcEEEEeCCCCEEE
Confidence            57999999999999999999999999999999999999999999999999999 9999999988 789999999999999


Q ss_pred             eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchh-Hhhhhcccc
Q 026584           81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK-EIEDYLNPE  159 (236)
Q Consensus        81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~-~l~~~l~~~  159 (236)
                      |+|++++++|+++|++ ++++|+|||+|+.++++|++|+|++|+|+|+|+|+++|||||+||+||++... ...+|.. +
T Consensus       105 f~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~-d  182 (238)
T PF03029_consen  105 FTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFE-D  182 (238)
T ss_dssp             HHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHH-S
T ss_pred             EEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhc-C
Confidence            9999999999999976 88999999999999999999999999999999999999999999999998431 2233333 4


Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHhhccCCe-eEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          160 SQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       160 ~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv-~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .+.+...+...    +++++++|++++++|+++ +|+|+|+++++++.+|+++||+|+||
T Consensus       183 ~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~y  238 (238)
T PF03029_consen  183 PDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQY  238 (238)
T ss_dssp             HHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhcC
Confidence            55555544432    899999999999999997 99999999999999999999999998

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=100.00  E-value=4.6e-49  Score=347.44  Aligned_cols=214  Identities=24%  Similarity=0.461  Sum_probs=192.0

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccC-CCCEEEEeCCCcee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIE   79 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~-~~~Yil~D~PGQiE   79 (236)
                      .++||||||+-+.||+..|||||.|++++||++|+||||||+++|+++|.+++++.+ +-|++.. +-+|+|+|||||||
T Consensus        50 pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~tk~dqv~-~~iek~~~~~~~~liDTPGQIE  128 (366)
T KOG1532|consen   50 PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFATKFDQVI-ELIEKRAEEFDYVLIDTPGQIE  128 (366)
T ss_pred             CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHH-HHHHHhhcccCEEEEcCCCceE
Confidence            489999999999999999999999999999999999999999999999999995432 2333221 34799999999999


Q ss_pred             eeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhcccc
Q 026584           80 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPE  159 (236)
Q Consensus        80 lf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~  159 (236)
                      .|+|+.++..|.+.|++ .+..|++|++|+...++|..|+|++|.|.|+++|.++|.|.|+||+|+.+.. -..+|++ |
T Consensus       129 ~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~-fa~eWm~-D  205 (366)
T KOG1532|consen  129 AFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE-FALEWMT-D  205 (366)
T ss_pred             EEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH-HHHHHHH-H
Confidence            99999999999999965 4889999999999999999999999999999999999999999999998877 4678888 8


Q ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          160 SQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       160 ~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .+.+.+++++...+....|.+++.-.+++|-- ++.+-+|+.+++|+++++.+||++...
T Consensus       206 fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  206 FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            88888888875656789999999999999865 999999999999999999999997543

>PRK13768 GTPase; Provisional

Probab=100.00  E-value=4.8e-38  Score=277.69  Aligned_cols=217  Identities=31%  Similarity=0.573  Sum_probs=197.7

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL   80 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl   80 (236)
                      |.+||+||+.+..||.|++|||+++++++||+++++||||++++|++++..++ +|+.++++.. ..+|+++|||||+|+
T Consensus        33 v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~  110 (253)
T PRK13768         33 VAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLLTKA-DEIKEEIESL-DADYVLVDTPGQMEL  110 (253)
T ss_pred             eEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHH
Confidence            57899999999999999999999999999999999999999999999999999 9999999887 679999999999999


Q ss_pred             eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchh--Hhhhhccc
Q 026584           81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK--EIEDYLNP  158 (236)
Q Consensus        81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~--~l~~~l~~  158 (236)
                      |+|++.++.+++.+++.. ..+++||+|+....++.++.+..++.++.+.+.+.|+++|+||+|+++...  .+.+++. 
T Consensus       111 ~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~-  188 (253)
T PRK13768        111 FAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLE-  188 (253)
T ss_pred             HhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-
Confidence            999999999999997544 678999999999999999999999999999999999999999999997641  2345555 


Q ss_pred             cHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584          159 ESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGEDA  222 (236)
Q Consensus       159 ~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~ed~  222 (236)
                      +++++..++....+.+ ++|+++|++.+++++. .+++|+|+++++++++|+..|.+.+..+||.
T Consensus       189 ~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~~~  252 (253)
T PRK13768        189 DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGEDL  252 (253)
T ss_pred             CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCCCC
Confidence            7778877777655555 9999999999999987 6999999999999999999999999999986

>COG1159 Era GTPase [General function prediction only]

Probab=99.00  E-value=5.1e-09  Score=94.37  Aligned_cols=153  Identities=15%  Similarity=0.227  Sum_probs=110.4

Q ss_pred             ChHHHHHHHHHHH-HhhHHHHHHHhccc----------CCCCEEEEeCCCceeeeeccchHHHHHHHHh-h--CCCceEE
Q 026584           38 PNGGLIYCMEHLE-DNLDDWLAEELDNY----------LDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S--RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~-~n~~~wl~~~i~~~----------~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~--~~~~~~~  103 (236)
                      ||.|..+-++.+. +++ ...+.+.+..          .+.+.+++||||   ++.-+..+.+.+.+.. +  .+.. ++
T Consensus        15 PNvGKSTLlN~l~G~Ki-sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPG---ih~pk~~l~~~m~~~a~~sl~dvD-li   89 (298)
T COG1159          15 PNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPG---IHKPKHALGELMNKAARSALKDVD-LI   89 (298)
T ss_pred             CCCcHHHHHHHHhcCce-EeecCCcchhhhheeEEEEcCCceEEEEeCCC---CCCcchHHHHHHHHHHHHHhccCc-EE
Confidence            9999999999998 677 7777766642          245789999999   7765555555444443 2  4566 58


Q ss_pred             EEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          104 VYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       104 V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      +|++|+.. +..-..++...      +-+...|+|.++||+|.++++..+..+.+                         
T Consensus        90 lfvvd~~~~~~~~d~~il~~------lk~~~~pvil~iNKID~~~~~~~l~~~~~-------------------------  138 (298)
T COG1159          90 LFVVDADEGWGPGDEFILEQ------LKKTKTPVILVVNKIDKVKPKTVLLKLIA-------------------------  138 (298)
T ss_pred             EEEEeccccCCccHHHHHHH------HhhcCCCeEEEEEccccCCcHHHHHHHHH-------------------------
Confidence            99999988 77766666443      22357899999999999987621221111                         


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCCCC
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIK  227 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~~~  227 (236)
                       .+-..+.+...+|+|+..+.+++.|...+.+.++.|+=.-|++-
T Consensus       139 -~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~  182 (298)
T COG1159         139 -FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ  182 (298)
T ss_pred             -HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence             11223334599999999999999999999999999876666544

>TIGR00436 era GTP-binding protein Era

Probab=98.89  E-value=1.8e-08  Score=89.60  Aligned_cols=150  Identities=15%  Similarity=0.187  Sum_probs=91.4

Q ss_pred             ChHHHHHHHHHHHH-hhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHHHHh-h-CCCceEEE
Q 026584           38 PNGGLIYCMEHLED-NLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S-RNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~-n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~-~~~~~~~V  104 (236)
                      ||.|..+-++.|.. ++ .....+.+.          ....+++++||||+.+-.  +...+.+.+... . .+.. +++
T Consensus         9 pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l~~aD-vvl   84 (270)
T TIGR00436         9 PNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAIGGVD-LIL   84 (270)
T ss_pred             CCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHHhhCC-EEE
Confidence            88899999998874 33 222222111          112357999999987752  222222332221 1 2344 589


Q ss_pred             EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      +++|+........++      +....+.+.|.+.|+||+|+.... .+...                   ..+       
T Consensus        85 ~VvD~~~~~~~~~~i------~~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~-------------------~~~-------  131 (270)
T TIGR00436        85 FVVDSDQWNGDGEFV------LTKLQNLKRPVVLTRNKLDNKFKD-KLLPL-------------------IDK-------  131 (270)
T ss_pred             EEEECCCCCchHHHH------HHHHHhcCCCEEEEEECeeCCCHH-HHHHH-------------------HHH-------
Confidence            999998654443333      222345789999999999997433 21110                   001       


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCC
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL  224 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~  224 (236)
                      +...++...++|+|++++++++.|+..|-+.++.++-.-|
T Consensus       132 ~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~  171 (270)
T TIGR00436       132 YAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYP  171 (270)
T ss_pred             HHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCC
Confidence            1111233478999999999999999999999877654333

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.83  E-value=1e-07  Score=79.84  Aligned_cols=115  Identities=19%  Similarity=0.383  Sum_probs=72.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++||||+..      ..+.....++.  .. ++++++|+..-..+...-     .+.....+++|.|.|+||+|++.
T Consensus        71 ~i~~iDtPG~~~------f~~~~~~~~~~--~D-~ailvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D~~~  136 (188)
T PF00009_consen   71 KITLIDTPGHED------FIKEMIRGLRQ--AD-IAILVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMDLIE  136 (188)
T ss_dssp             EEEEEEESSSHH------HHHHHHHHHTT--SS-EEEEEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCTSSH
T ss_pred             ceeecccccccc------eeecccceecc--cc-cceeeeeccccccccccc-----ccccccccccceEEeeeeccchh
Confidence            579999999754      34455555633  34 589999997543333221     23445668999999999999982


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .  .+.+.                   ..++..++.+-...-  ..+.++|+|+.++.++..|+.++.+.++
T Consensus       137 ~--~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  137 K--ELEEI-------------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             H--HHHHH-------------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             h--hHHHH-------------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            2  22211                   112222222222111  2589999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01898 Obg Obg subfamily

Probab=98.69  E-value=3.2e-07  Score=74.12  Aligned_cols=118  Identities=21%  Similarity=0.286  Sum_probs=73.1

Q ss_pred             CEEEEeCCCceeeeecc-chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~-~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~D  144 (236)
                      .+.++|||||.+.+... ...+...+.++.  .. ++++++|+..-.++...+..+.-.+....  ..+.|.+.|+||+|
T Consensus        49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~d-~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  125 (170)
T cd01898          49 SFVVADIPGLIEGASEGKGLGHRFLRHIER--TR-LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID  125 (170)
T ss_pred             eEEEEecCcccCcccccCCchHHHHHHHHh--CC-EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence            67899999998765432 334444455532  33 68999998754234444444433333221  13789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.++. ...++..                          +.........++++|++++.++..++..|-+.
T Consensus       126 l~~~~-~~~~~~~--------------------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         126 LLDEE-ELFELLK--------------------------ELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             cCCch-hhHHHHH--------------------------HHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            97644 1111100                          11112123578999999999999999887653

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.66  E-value=3.1e-07  Score=73.00  Aligned_cols=113  Identities=20%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++|||||-++..........-..+...+.. ++++++|+....   .... .   ...+.+.+.|.+.|+||+|+.
T Consensus        43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d-~vi~v~d~~~~~---~~~~-~---~~~~~~~~~~~iiv~NK~Dl~  114 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD-LIVNVVDATNLE---RNLY-L---TLQLLELGLPVVVALNMIDEA  114 (158)
T ss_pred             eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc-EEEEEeeCCcch---hHHH-H---HHHHHHcCCCEEEEEehhhhc
Confidence            3589999999988664432211111222212444 689999987532   2111 1   122345799999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ... ....                   ....+       ...++ ..++|+|+.+++++..++..+.++
T Consensus       115 ~~~-~~~~-------------------~~~~~-------~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         115 EKR-GIKI-------------------DLDKL-------SELLG-VPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             ccc-cchh-------------------hHHHH-------HHhhC-CCeEEEEccCCCCHHHHHHHHHHH
Confidence            543 1110                   00111       11112 578999999999999999998875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.66  E-value=1.1e-07  Score=78.71  Aligned_cols=131  Identities=24%  Similarity=0.343  Sum_probs=79.1

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhccc--------------CCCCEEEEeCCCceeeeeccc---hHHHHHHHHhhCCCc
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDNY--------------LDDDYLVFDCPGQIELFTHVP---VLRNFVDHLKSRNFN  100 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~~--------------~~~~Yil~D~PGQiElf~~~~---~~~~iv~~L~~~~~~  100 (236)
                      ||-|...-++.|...- .    ++.++              ....+.++|+||   +|..++   .-+.-.+.|......
T Consensus         9 PNvGKStLfN~Ltg~~-~----~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG---~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    9 PNVGKSTLFNALTGAK-Q----KVGNWPGTTVEKKEGIFKLGDQQVELVDLPG---IYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             TTSSHHHHHHHHHTTS-E----EEEESTTSSSEEEEEEEEETTEEEEEEE-------SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CCCCHHHHHHHHHCCC-c----eecCCCCCCeeeeeEEEEecCceEEEEECCC---cccCCCCCcHHHHHHHHHhhcCCC
Confidence            7777777777776321 0    22221              135789999999   564332   223334455444455


Q ss_pred             eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                       ++++++|+..+. .+-++      +.-+..+++|.|.|+||+|++++++ +.    -+               ..+|++
T Consensus        81 -~ii~VvDa~~l~-r~l~l------~~ql~e~g~P~vvvlN~~D~a~~~g-~~----id---------------~~~Ls~  132 (156)
T PF02421_consen   81 -LIIVVVDATNLE-RNLYL------TLQLLELGIPVVVVLNKMDEAERKG-IE----ID---------------AEKLSE  132 (156)
T ss_dssp             -EEEEEEEGGGHH-HHHHH------HHHHHHTTSSEEEEEETHHHHHHTT-EE----E----------------HHHHHH
T ss_pred             -EEEEECCCCCHH-HHHHH------HHHHHHcCCCEEEEEeCHHHHHHcC-CE----EC---------------HHHHHH
Confidence             689999998753 33333      3445568999999999999987652 11    01               122222


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                          .+.    +..+|+|+.+++++++|..+|
T Consensus       133 ----~Lg----~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  133 ----RLG----VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             ----HHT----S-EEEEBTTTTBTHHHHHHHH
T ss_pred             ----HhC----CCEEEEEeCCCcCHHHHHhhC
Confidence                222    789999999999999999876

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.64  E-value=4.2e-07  Score=83.54  Aligned_cols=148  Identities=20%  Similarity=0.298  Sum_probs=88.9

Q ss_pred             ChHHHHHHHHHHHHhh---HH--HHHH--Hhc--ccCC-CCEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEe
Q 026584           38 PNGGLIYCMEHLEDNL---DD--WLAE--ELD--NYLD-DDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYL  106 (236)
Q Consensus        38 PNGalv~~me~l~~n~---~~--wl~~--~i~--~~~~-~~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~L  106 (236)
                      ||.|..+-++.+...-   .+  +...  .+.  .+.+ .++.|+||||++|-... ......+++.+++.  + +++|+
T Consensus       166 pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera--d-~ll~V  242 (329)
T TIGR02729       166 PNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT--R-VLLHL  242 (329)
T ss_pred             CCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh--C-EEEEE
Confidence            7888888887776421   00  0000  000  1112 46899999999985432 23455666666432  3 68999


Q ss_pred             ecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          107 LDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       107 iD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      +|+...  ++|-.-+..+.--+....  ..+.|.+.|+||+|+.... ...+                       +.+.+
T Consensus       243 vD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-~~~~-----------------------~~~~l  298 (329)
T TIGR02729       243 IDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-ELAE-----------------------LLKEL  298 (329)
T ss_pred             EcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-HHHH-----------------------HHHHH
Confidence            998754  245444444433333322  1478999999999996543 1111                       01111


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +   +.++ ..++|+|+.+++++++|+..|-+.+
T Consensus       299 ~---~~~~-~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       299 K---KALG-KPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             H---HHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence            1   1222 5799999999999999999987654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.60  E-value=6.9e-07  Score=84.01  Aligned_cols=151  Identities=19%  Similarity=0.207  Sum_probs=89.9

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCC-CEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDD-DYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~-~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~  105 (236)
                      ||.|..+-++.|...- -.+.....          .+.+. .++++||||++|--. ....+.++++.+++  .+ +++|
T Consensus       168 PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r--ad-vlL~  243 (390)
T PRK12298        168 PNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER--CR-VLLH  243 (390)
T ss_pred             CCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh--CC-EEEE
Confidence            9999999999987421 11111111          01122 489999999876321 11235566666643  33 6899


Q ss_pred             eecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          106 LLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       106 LiD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      ++|+..+  .+|..-++.++--+....  -.+.|.|.|+||+|+.... ++...+                   .     
T Consensus       244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l-------------------~-----  298 (390)
T PRK12298        244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERA-------------------K-----  298 (390)
T ss_pred             EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHH-------------------H-----
Confidence            9998743  244333333333222211  1478999999999997543 221100                   0     


Q ss_pred             HHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          182 LIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       182 l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                        ++.+.++. ..++|+|+.+++++++|+..|-+.+..+
T Consensus       299 --~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        299 --AIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             --HHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence              11122232 3689999999999999999998877654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.60  E-value=1e-07  Score=87.95  Aligned_cols=101  Identities=25%  Similarity=0.473  Sum_probs=69.8

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC----ccchhhHHHHHHHHHHHHhhcCCCEEEE-e
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF----ITDVTKFISGCMASLSAMVQLELPHVNI-L  140 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~----~~dp~~~is~~l~sls~m~~l~lP~InV-l  140 (236)
                      +.+|||.||||..+ ||     |+++.--.  ... .+|.|+|+..    .+..+.||+++         ||+.|+.| .
T Consensus        85 KRkFIiADTPGHeQ-YT-----RNMaTGAS--Tad-lAIlLVDAR~Gvl~QTrRHs~I~sL---------LGIrhvvvAV  146 (431)
T COG2895          85 KRKFIIADTPGHEQ-YT-----RNMATGAS--TAD-LAILLVDARKGVLEQTRRHSFIASL---------LGIRHVVVAV  146 (431)
T ss_pred             cceEEEecCCcHHH-Hh-----hhhhcccc--ccc-EEEEEEecchhhHHHhHHHHHHHHH---------hCCcEEEEEE
Confidence            56899999999665 54     56555442  233 4889999965    57788999876         69999988 8


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHH
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIR  206 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~  206 (236)
                      ||+||+...++                      +|.........+..+-++  +.|+|+|+..++++.
T Consensus       147 NKmDLvdy~e~----------------------~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         147 NKMDLVDYSEE----------------------VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             eeecccccCHH----------------------HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            99999864311                      122222222233334443  799999999998874

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.59  E-value=1.3e-06  Score=74.43  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=66.6

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL  145 (236)
                      .++.++||||+.      +.+......+.  ... ++++++|+..-..+...-     .+....++++| .|.|+||+|+
T Consensus        65 ~~i~~iDtPG~~------~~~~~~~~~~~--~~D-~~ilVvda~~g~~~~~~~-----~~~~~~~~~~~~iIvviNK~D~  130 (195)
T cd01884          65 RHYAHVDCPGHA------DYIKNMITGAA--QMD-GAILVVSATDGPMPQTRE-----HLLLARQVGVPYIVVFLNKADM  130 (195)
T ss_pred             eEEEEEECcCHH------HHHHHHHHHhh--hCC-EEEEEEECCCCCcHHHHH-----HHHHHHHcCCCcEEEEEeCCCC
Confidence            468999999963      23334444443  233 588899987533332211     12334457898 5688999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCccc----------HHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESS----------IRYVLSQ  211 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~----------i~~L~~~  211 (236)
                      +.+. +..+                      ...+.+.+.+..++    -+.|+|+|+.++++          +.-|+.+
T Consensus       131 ~~~~-~~~~----------------------~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~  187 (195)
T cd01884         131 VDDE-ELLE----------------------LVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDA  187 (195)
T ss_pred             CCcH-HHHH----------------------HHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHH
Confidence            7433 2111                      11112223333333    38999999999886          4577777


Q ss_pred             HHHh
Q 026584          212 IDNC  215 (236)
Q Consensus       212 Id~~  215 (236)
                      ||+.
T Consensus       188 l~~~  191 (195)
T cd01884         188 LDSY  191 (195)
T ss_pred             HHhC
Confidence            7754

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00089 era GTPase Era; Reviewed

Probab=98.56  E-value=1e-06  Score=78.70  Aligned_cols=148  Identities=20%  Similarity=0.316  Sum_probs=88.0

Q ss_pred             ChHHHHHHHHHHHHh-hHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHH-HHHHHh-h-CCCceEE
Q 026584           38 PNGGLIYCMEHLEDN-LDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLK-S-RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n-~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~-iv~~L~-~-~~~~~~~  103 (236)
                      ||.|..+-++.|... + .....+.+          ...+.+++++||||+.+..   ....+ +..... . .+.. ++
T Consensus        14 pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~~~~~~D-~i   88 (292)
T PRK00089         14 PNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWSSLKDVD-LV   88 (292)
T ss_pred             CCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHHHHhcCC-EE
Confidence            788888888887632 2 11111111          1112479999999965422   22222 222221 1 2344 58


Q ss_pred             EEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          104 VYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       104 V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      ++++|+.. +......+.      ..+.+.+.|.+.|+||+|+.+...++...+.                         
T Consensus        89 l~vvd~~~~~~~~~~~i~------~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~-------------------------  137 (292)
T PRK00089         89 LFVVDADEKIGPGDEFIL------EKLKKVKTPVILVLNKIDLVKDKEELLPLLE-------------------------  137 (292)
T ss_pred             EEEEeCCCCCChhHHHHH------HHHhhcCCCEEEEEECCcCCCCHHHHHHHHH-------------------------
Confidence            99999976 333333332      2222458999999999999854322221111                         


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA  222 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~  222 (236)
                       .+-+.++...++|+|+.+++++..|+..+-+.+..++-.
T Consensus       138 -~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~  176 (292)
T PRK00089        138 -ELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPY  176 (292)
T ss_pred             -HHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCC
Confidence             111234567899999999999999999999988766533

>cd01889 SelB_euk SelB subfamily

Probab=98.56  E-value=1.9e-06  Score=72.21  Aligned_cols=116  Identities=16%  Similarity=0.273  Sum_probs=67.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.++|||||..      ..+.......  ... ++++++|+..-..+...- .+.    .....+.|.+.|+||+|+.
T Consensus        68 ~~~~i~DtpG~~~------~~~~~~~~~~--~~d-~vi~VvD~~~~~~~~~~~-~~~----~~~~~~~~~iiv~NK~Dl~  133 (192)
T cd01889          68 LQITLVDCPGHAS------LIRTIIGGAQ--IID-LMLLVVDATKGIQTQTAE-CLV----IGEILCKKLIVVLNKIDLI  133 (192)
T ss_pred             ceEEEEECCCcHH------HHHHHHHHHh--hCC-EEEEEEECCCCccHHHHH-HHH----HHHHcCCCEEEEEECcccC
Confidence            3679999999832      2333333332  223 588999987533222211 111    1222488999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... .....                   ..++.+.+...+.+  +.-+.++|+|+.+++++++|...++.-+
T Consensus       134 ~~~-~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         134 PEE-ERERK-------------------IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CHH-HHHHH-------------------HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence            533 11110                   11111111122222  2347899999999999999999988644

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04163 Era Era subfamily

Probab=98.52  E-value=1.5e-06  Score=68.64  Aligned_cols=115  Identities=17%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             CCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..+.++||||+.+....... ..+..... ..+.. ++++++|+... ......+.      ....+.+.|.+.|+||+|
T Consensus        51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d-~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~iiv~nK~D  122 (168)
T cd04163          51 AQIIFVDTPGIHKPKKKLGERMVKAAWSA-LKDVD-LVLFVVDASEPIGEGDEFIL------ELLKKSKTPVILVLNKID  122 (168)
T ss_pred             eEEEEEECCCCCcchHHHHHHHHHHHHHH-HHhCC-EEEEEEECCCccCchHHHHH------HHHHHhCCCEEEEEEchh
Confidence            35899999997664433221 11111111 12333 58899999765 44433332      223345899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +......+.+++.                          .+-...+...++++|+.++++++.++..|.+.
T Consensus       123 l~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         123 LVKDKEDLLPLLE--------------------------KLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ccccHHHHHHHHH--------------------------HHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            9743312221111                          11122335688999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00880 Era_like Era (E

Probab=98.50  E-value=3.9e-06  Score=65.08  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=76.2

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.++|||||.+....+.........+.+ +.. ++++++|+.........-     ........+.|.+.|+||+|+.
T Consensus        45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~-~~d-~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~~  117 (163)
T cd00880          45 GPVVLIDTPGIDEAGGLGREREELARRVLE-RAD-LILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDLL  117 (163)
T ss_pred             CcEEEEECCCCCccccchhhHHHHHHHHHH-hCC-EEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccccC
Confidence            368999999999877655443333333322 233 578899987654443332     2334455799999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ... .......                       ........+....++++|+.++.+++.+...+.+.
T Consensus       118 ~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         118 PEE-EEEELLE-----------------------LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             Chh-hHHHHHH-----------------------HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            644 1111000                       11122234455789999999999999999988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04171 SelB SelB subfamily

Probab=98.50  E-value=2.7e-06  Score=67.83  Aligned_cols=109  Identities=16%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC-CEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL-PHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l-P~InVlsK~DLl  146 (236)
                      .+-++|||||-++      .......+  .+.. ++++++|+..-..+...-.     +......+. |.+.|+||+|+.
T Consensus        52 ~~~~~DtpG~~~~------~~~~~~~~--~~ad-~ii~V~d~~~~~~~~~~~~-----~~~~~~~~~~~~ilv~NK~Dl~  117 (164)
T cd04171          52 RLGFIDVPGHEKF------IKNMLAGA--GGID-LVLLVVAADEGIMPQTREH-----LEILELLGIKRGLVVLTKADLV  117 (164)
T ss_pred             EEEEEECCChHHH------HHHHHhhh--hcCC-EEEEEEECCCCccHhHHHH-----HHHHHHhCCCcEEEEEECcccc
Confidence            5688999998431      12222223  2344 6899999864211222111     111222355 999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ... ......                   .+    +.+.+...  ....++|+|++++++++.++..+.+
T Consensus       118 ~~~-~~~~~~-------------------~~----~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         118 DED-WLELVE-------------------EE----IRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CHH-HHHHHH-------------------HH----HHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            432 111000                   01    11111221  2368999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.48  E-value=3.7e-06  Score=71.51  Aligned_cols=115  Identities=16%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCC-CEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLEL-PHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~l-P~InVlsK~D  144 (236)
                      ..+.++|||||-.      ..+.....+.  +.. ++++++|+.. ...+...-  .+   ......+. |.|.|+||+|
T Consensus        83 ~~i~~iDtPG~~~------~~~~~~~~~~--~~D-~~llVvd~~~~~~~~~t~~--~l---~~~~~~~~~~iiivvNK~D  148 (203)
T cd01888          83 RHVSFVDCPGHEI------LMATMLSGAA--VMD-GALLLIAANEPCPQPQTSE--HL---AALEIMGLKHIIIVQNKID  148 (203)
T ss_pred             cEEEEEECCChHH------HHHHHHHhhh--cCC-EEEEEEECCCCCCCcchHH--HH---HHHHHcCCCcEEEEEEchh
Confidence            4579999999633      2333444442  334 5899999874 22222221  11   11123455 5788999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      +.+.. .+...+                       +.+.+.+..+  ....++|+|+.++++++.|+..|.+.+..+
T Consensus       149 l~~~~-~~~~~~-----------------------~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         149 LVKEE-QALENY-----------------------EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             ccCHH-HHHHHH-----------------------HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            97533 111100                       1111222222  236799999999999999999998876654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.46  E-value=1.9e-06  Score=69.61  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=72.2

Q ss_pred             CCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCcc-----chhhHHHHHHHHHHHHh-------hcC
Q 026584           67 DDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFIT-----DVTKFISGCMASLSAMV-------QLE  133 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~-----dp~~~is~~l~sls~m~-------~l~  133 (236)
                      .++.++||||+.+-+..... .+.+...++.  .. ++++++|+....     ++-.-...+...+....       ..+
T Consensus        44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (176)
T cd01881          44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRR--AD-AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA  120 (176)
T ss_pred             CeEEEEeccccchhhhcCCCccHHHHHHHhc--cC-EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence            46799999998765543332 3344455532  33 689999987653     33333333333333332       258


Q ss_pred             CCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          134 LPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       134 lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      .|.+.|+||+|+.... ....+.                          ...........++++|+.++.+++.++..+=
T Consensus       121 ~p~ivv~NK~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         121 KPVIYVLNKIDLDDAE-ELEEEL--------------------------VRELALEEGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             CCeEEEEEchhcCchh-HHHHHH--------------------------HHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence            9999999999997544 221110                          0111122236799999999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.42  E-value=5.1e-06  Score=76.69  Aligned_cols=150  Identities=16%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             ChHHHHHHHHHHHH-hh--HHH--HH--HHhc--ccC-CCCEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEe
Q 026584           38 PNGGLIYCMEHLED-NL--DDW--LA--EELD--NYL-DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYL  106 (236)
Q Consensus        38 PNGalv~~me~l~~-n~--~~w--l~--~~i~--~~~-~~~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~L  106 (236)
                      ||.|..+-++.+.. +.  -+|  ..  -.+.  .+. ..++.++||||++|=-.. ......+++.+++  .+ +++|+
T Consensus       167 PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~--a~-vlI~V  243 (335)
T PRK12299        167 PNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER--TR-LLLHL  243 (335)
T ss_pred             CCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh--cC-EEEEE
Confidence            88888888888763 11  011  00  0000  011 235899999999872211 1234566666643  23 68999


Q ss_pred             ecCCCccchhhHHHHHHHHHHHHhh--cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          107 LDSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       107 iD~~~~~dp~~~is~~l~sls~m~~--l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      +|+.....-..+ ..+.--+.....  .+.|.+.|+||+|+.... ....          .        ....       
T Consensus       244 iD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~-~~~~----------~--------~~~~-------  296 (335)
T PRK12299        244 VDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE-EERE----------K--------RAAL-------  296 (335)
T ss_pred             EcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch-hHHH----------H--------HHHH-------
Confidence            998743321222 222222211111  378999999999997543 1100          0        0000       


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      ....++ ..++|+|+.+++++++|+..|-+.+..
T Consensus       297 ~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        297 ELAALG-GPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             HHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            011222 578999999999999999999887653

>cd01895 EngA2 EngA2 subfamily

Probab=98.41  E-value=7.8e-06  Score=65.24  Aligned_cols=120  Identities=12%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             CCEEEEeCCCceeeeeccchHHHH--HHHHh-hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNF--VDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~i--v~~L~-~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      .+|.++||||+-+.........++  .+.+. ..+.. ++++++|+..-.....   ..+  +......+.|.+.|+||+
T Consensus        50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~---~~~--~~~~~~~~~~~iiv~nK~  123 (174)
T cd01895          50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD-VVLLVIDATEGITEQD---LRI--AGLILEEGKALVIVVNKW  123 (174)
T ss_pred             eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcchhH---HHH--HHHHHhcCCCEEEEEecc
Confidence            468999999987663322222211  12221 12334 5888999754322221   111  122233589999999999


Q ss_pred             ccccchh-HhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          144 DLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       144 DLl~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      |+..... ....                       ..+.+.+.+.......++|+|+++++++..+...+.++
T Consensus       124 Dl~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         124 DLVEKDSKTMKE-----------------------FKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCccHHHHHH-----------------------HHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            9975421 1111                       01111111112234689999999999999999998775

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00157 Rho Rho (Ras homology) family

Probab=98.40  E-value=2.2e-06  Score=69.06  Aligned_cols=119  Identities=13%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH---HHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC---MASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~---l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||.+.+..+...      +  ... -++++++|+.   ++..|....   +..+. ....+.|.+.|.||+|
T Consensus        49 ~l~~~D~~g~~~~~~~~~~~------~--~~~-~~~i~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D  115 (171)
T cd00157          49 NLGLWDTAGQEEYDRLRPLS------Y--PNT-DVFLICFSVD---SPSSFENVKTKWIPEIR-HYCPNVPIILVGTKID  115 (171)
T ss_pred             EEEEEeCCCcccccccchhh------c--CCC-CEEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEEccHH
Confidence            37899999999865432221      1  123 3688889975   445554432   22222 2234799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.+... ....+......        .   .   .....+....++...|+++|+.+++++++++..|-+
T Consensus       116 l~~~~~-~~~~~~~~~~~--------v---~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         116 LRDDEN-TLKKLEKGKEP--------I---T---PEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hhhchh-hhhhcccCCCc--------c---C---HHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            986552 21111000000        0   0   011223445567779999999999999999988754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.39  E-value=4.2e-06  Score=67.46  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHH-HHHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASL-SAMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sl-s~m~~l~lP~InVlsK~  143 (236)
                      ..+.++|||||-++..       +....- .+.+ ++|+++|+..   +..+-..  .+..+ .....-+.|.+.|+||+
T Consensus        50 ~~~~l~Dt~G~~~~~~-------~~~~~~-~~~~-~~v~vvd~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~  117 (167)
T cd04160          50 ARLKFWDLGGQESLRS-------LWDKYY-AECH-AIIYVIDSTD---RERFEESKSALEKVLRNEALEGVPLLILANKQ  117 (167)
T ss_pred             EEEEEEECCCChhhHH-------HHHHHh-CCCC-EEEEEEECch---HHHHHHHHHHHHHHHhChhhcCCCEEEEEEcc
Confidence            4578999999976322       112221 2344 6899999854   3222221  11111 11112479999999999


Q ss_pred             ccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          144 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       144 DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      |+....  .++..++.                          ....  ...-+.++++|+++++++++++..|-
T Consensus       118 D~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         118 DLPDALSVEEIKEVFQ--------------------------DKAEEIGRRDCLVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             ccccCCCHHHHHHHhc--------------------------cccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence            985432  01111111                          0011  11237899999999999999998774

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.37  E-value=4.6e-06  Score=79.30  Aligned_cols=147  Identities=16%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             ChHHHHHHHHHHHHh-h--HHH--HHHHh--c--ccC-CCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDN-L--DDW--LAEEL--D--NYL-DDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n-~--~~w--l~~~i--~--~~~-~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~  105 (236)
                      ||.|..+-++.+... .  .++  ..-..  .  .+. ...+.++|+||++| -.+.  ..+..+++.+++  .+ +++|
T Consensus       167 pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie-ga~~~~gLg~~fLrhier--~~-llI~  242 (424)
T PRK12297        167 PNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE-GASEGVGLGHQFLRHIER--TR-VIVH  242 (424)
T ss_pred             CCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc-cccccchHHHHHHHHHhh--CC-EEEE
Confidence            899999888888642 1  011  00000  0  111 24689999999998 3332  234555666543  34 6899


Q ss_pred             eecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          106 LLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       106 LiD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      ++|+...  .+|..-+..+.--+....  ..+.|+|.|+||+||......+                       .++   
T Consensus       243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l-----------------------~~l---  296 (424)
T PRK12297        243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL-----------------------EEF---  296 (424)
T ss_pred             EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH-----------------------HHH---
Confidence            9998653  244332222222222211  1479999999999973221000                       111   


Q ss_pred             HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                          .+.++ ..++|+|+.++++++.|+..|.+.+.-.
T Consensus       297 ----~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        297 ----KEKLG-PKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             ----HHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                11112 5789999999999999999998876543

>cd01864 Rab19 Rab19 subfamily

Probab=98.37  E-value=6.3e-06  Score=66.60  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=69.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||.+.       +.+.+..- .+.. ++++++|+.   ++..|  +..++..+......++|.+.|.||+|+
T Consensus        53 ~l~i~D~~G~~~~-------~~~~~~~~-~~~d-~~llv~d~~---~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  120 (165)
T cd01864          53 KLQIWDTAGQERF-------RTITQSYY-RSAN-GAIIAYDIT---RRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL  120 (165)
T ss_pred             EEEEEECCChHHH-------HHHHHHHh-ccCC-EEEEEEECc---CHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            5689999998542       12222221 2333 577888874   44444  333444444433468999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.. +.      .                   .+...++...++...+++.|++++.++++++..+-+.
T Consensus       121 ~~~~-~~------~-------------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         121 EEQR-EV------L-------------------FEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cccc-cc------C-------------------HHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            6432 10      0                   0011123345666789999999999999999988654

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.36  E-value=2.1e-06  Score=84.70  Aligned_cols=147  Identities=20%  Similarity=0.259  Sum_probs=86.4

Q ss_pred             ChHHHHHHHHHHHHhh---HHHHHHHhc------ccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeec
Q 026584           38 PNGGLIYCMEHLEDNL---DDWLAEELD------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD  108 (236)
Q Consensus        38 PNGalv~~me~l~~n~---~~wl~~~i~------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD  108 (236)
                      ||.|.-.-++.+...-   ..|---..+      .+.+.++.++|||||-++...+..-+..-+.+...+.. ++++++|
T Consensus         3 pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD-vvI~VvD   81 (591)
T TIGR00437         3 PNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD-LVVNVVD   81 (591)
T ss_pred             CCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCC-EEEEEec
Confidence            6777777777775321   011000000      11134589999999988765543221111223223344 6899999


Q ss_pred             CCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc
Q 026584          109 SQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE  188 (236)
Q Consensus       109 ~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d  188 (236)
                      +......-. .      ..-..+.+.|.+.|+||+|+.++. ....    +               .+++.       +.
T Consensus        82 at~ler~l~-l------~~ql~~~~~PiIIVlNK~Dl~~~~-~i~~----d---------------~~~L~-------~~  127 (591)
T TIGR00437        82 ASNLERNLY-L------TLQLLELGIPMILALNLVDEAEKK-GIRI----D---------------EEKLE-------ER  127 (591)
T ss_pred             CCcchhhHH-H------HHHHHhcCCCEEEEEehhHHHHhC-CChh----h---------------HHHHH-------HH
Confidence            976533211 1      112345799999999999986433 1100    0               01111       11


Q ss_pred             cCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          189 YSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       189 ~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      ++ +.++|+|+++++++++++..+-+...|++
T Consensus       128 lg-~pvv~tSA~tg~Gi~eL~~~i~~~~~~~~  158 (591)
T TIGR00437       128 LG-VPVVPTSATEGRGIERLKDAIRKAIGLKE  158 (591)
T ss_pred             cC-CCEEEEECCCCCCHHHHHHHHHHHhhcch
Confidence            22 57999999999999999999998876764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.35  E-value=3.1e-06  Score=69.31  Aligned_cols=136  Identities=13%  Similarity=0.241  Sum_probs=79.8

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc--cCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV  115 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~--~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp  115 (236)
                      ||.|.-.-++.+..+. .+-. ....  +...  -++|||||.  +.+....+.+...+++  .. ++++++|+....  
T Consensus        10 ~~~GKstl~~~l~~~~-~~~~-~~~~v~~~~~--~~iDtpG~~--~~~~~~~~~~~~~~~~--ad-~il~v~d~~~~~--   78 (158)
T PRK15467         10 VGAGKTTLFNALQGNY-TLAR-KTQAVEFNDK--GDIDTPGEY--FSHPRWYHALITTLQD--VD-MLIYVHGANDPE--   78 (158)
T ss_pred             CCCCHHHHHHHHcCCC-ccCc-cceEEEECCC--CcccCCccc--cCCHHHHHHHHHHHhc--CC-EEEEEEeCCCcc--
Confidence            6667666667765433 2111 1111  1011  169999963  3444445555555533  34 578889986332  


Q ss_pred             hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeE
Q 026584          116 TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSF  194 (236)
Q Consensus       116 ~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f  194 (236)
                       .++...+..+    ..+.|.+.|+||+|+....  .+                           .+.+.+...+. ..+
T Consensus        79 -s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~--~~---------------------------~~~~~~~~~~~~~p~  124 (158)
T PRK15467         79 -SRLPAGLLDI----GVSKRQIAVISKTDMPDAD--VA---------------------------ATRKLLLETGFEEPI  124 (158)
T ss_pred             -cccCHHHHhc----cCCCCeEEEEEccccCccc--HH---------------------------HHHHHHHHcCCCCCE
Confidence             2222222221    2478999999999984311  10                           01122334454 689


Q ss_pred             EEeeccCcccHHHHHHHHHHhhcc
Q 026584          195 MPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       195 ~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +++|+.+++++++|+..+.+.++-
T Consensus       125 ~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        125 FELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             EEEECCCccCHHHHHHHHHHhchh
Confidence            999999999999999999887754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.33  E-value=1.7e-05  Score=64.61  Aligned_cols=124  Identities=17%  Similarity=0.159  Sum_probs=68.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ++.++||||+..+      .......++  +.. ++++++|+..-..+...-   +  +....+.+.|.+.|+||+|+..
T Consensus        63 ~~~liDtpG~~~~------~~~~~~~~~--~~d-~~i~v~d~~~~~~~~~~~---~--~~~~~~~~~~i~iv~nK~D~~~  128 (189)
T cd00881          63 RVNFIDTPGHEDF------SSEVIRGLS--VSD-GAILVVDANEGVQPQTRE---H--LRIAREGGLPIIVAINKIDRVG  128 (189)
T ss_pred             EEEEEeCCCcHHH------HHHHHHHHH--hcC-EEEEEEECCCCCcHHHHH---H--HHHHHHCCCCeEEEEECCCCcc
Confidence            5799999997541      112223332  233 578899986533222111   1  1122236899999999999986


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. .+.....    .+...+.. .+..+.+     .....+.....++|+|+.++.++.+++..+.+.+
T Consensus       129 ~~-~~~~~~~----~~~~~~~~-~~~~~~~-----~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         129 EE-DLEEVLR----EIKELLGL-IGFISTK-----EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hh-cHHHHHH----HHHHHHcc-ccccchh-----hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            32 1211110    11111110 0000000     1112234458999999999999999999988775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.33  E-value=4.6e-09  Score=88.93  Aligned_cols=137  Identities=26%  Similarity=0.237  Sum_probs=101.8

Q ss_pred             EEEecCCCCCCCCC-----CCccccccCcCHHHHHhhcCCCChHHHHHHHHHHH----HhhHHHHHHHhcccCCCCEEEE
Q 026584            2 HIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE----DNLDDWLAEELDNYLDDDYLVF   72 (236)
Q Consensus         2 ~iVNLDPa~e~~~Y-----~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~----~n~~~wl~~~i~~~~~~~Yil~   72 (236)
                      .++|.+|+....++     ...+|+++...++.+|..|..||||+++.+-....    +....|.. ++.....+.+.++
T Consensus        37 t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~l~~~~~~~~~ii  115 (219)
T COG1100          37 TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLE-ELRELAPDDVPIL  115 (219)
T ss_pred             ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHH-HHHHhCCCCceEE
Confidence            46899999988888     67789999999999999999999999987665553    34435655 3444423579999


Q ss_pred             eCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           73 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        73 D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ++|+|++++.++.....+.+.++     .+.++..+......+..+.+. ++..|++. +..|.|+.+.|.++.
T Consensus       116 lv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~-~~~~~v~~~~~~~~~  182 (219)
T COG1100         116 LVGNKIDLFDEQSSSEEILNQLN-----REVVLLVLAPKAVLPEVANPA-LLETSAKS-LTGPNVNELFKELLR  182 (219)
T ss_pred             EEecccccccchhHHHHHHhhhh-----cCcchhhhHhHHhhhhhcccc-eeEeeccc-CCCcCHHHHHHHHHH
Confidence            99999999999999988887773     235666777766666666665 55555544 566677666666653

>PRK15494 era GTPase Era; Provisional

Probab=98.33  E-value=1.1e-05  Score=74.41  Aligned_cols=150  Identities=17%  Similarity=0.244  Sum_probs=88.1

Q ss_pred             ChHHHHHHHHHHHH-hhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHHHHh-h-CCCceEEE
Q 026584           38 PNGGLIYCMEHLED-NLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S-RNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~-n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~-~~~~~~~V  104 (236)
                      ||.|.-+-++.|.. ++ .....+.+.          ....+.+++|||||.+-+..  ..+.+.+... . .+.. +++
T Consensus        61 ~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~~~~~r~~~~~l~~aD-vil  136 (339)
T PRK15494         61 PNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LEKAMVRCAWSSLHSAD-LVL  136 (339)
T ss_pred             CCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HHHHHHHHHHHHhhhCC-EEE
Confidence            88999999988874 33 222222221          11346789999999875532  1222222211 1 2344 578


Q ss_pred             EeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          105 YLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       105 ~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      +++|+... .+....+      +...-..+.|.|.|+||+|+....  +.        .+    .               
T Consensus       137 ~VvD~~~s~~~~~~~i------l~~l~~~~~p~IlViNKiDl~~~~--~~--------~~----~---------------  181 (339)
T PRK15494        137 LIIDSLKSFDDITHNI------LDKLRSLNIVPIFLLNKIDIESKY--LN--------DI----K---------------  181 (339)
T ss_pred             EEEECCCCCCHHHHHH------HHHHHhcCCCEEEEEEhhcCcccc--HH--------HH----H---------------
Confidence            89997542 2222222      122234578999999999985321  11        00    0               


Q ss_pred             HHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCCC
Q 026584          184 ELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKI  226 (236)
Q Consensus       184 ~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~~  226 (236)
                      +.+... ....++|+|+.++++++.|+..|-+.+..|+=.-|++
T Consensus       182 ~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~  225 (339)
T PRK15494        182 AFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAED  225 (339)
T ss_pred             HHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCC
Confidence            111112 2367999999999999999999999888775554443

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.33  E-value=1.3e-05  Score=64.28  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++|||||.++...    +.  ..+.  ... ++++++|+..-..+..+-.     +..+.+.+.|.+.|+||+|+.
T Consensus        50 ~~~~iiDtpG~~~~~~~----~~--~~~~--~~d-~il~v~d~~~~~~~~~~~~-----~~~~~~~~~p~ivv~NK~Dl~  115 (168)
T cd01887          50 PGITFIDTPGHEAFTNM----RA--RGAS--LTD-IAILVVAADDGVMPQTIEA-----IKLAKAANVPFIVALNKIDKP  115 (168)
T ss_pred             ceEEEEeCCCcHHHHHH----HH--HHHh--hcC-EEEEEEECCCCccHHHHHH-----HHHHHHcCCCEEEEEEceecc
Confidence            36899999998553211    11  1121  233 5788999865333333322     223345799999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ...  ..        .+...+.        ++..   ...+..+ -..++|+|+.+++++..|+..|.+..
T Consensus       116 ~~~--~~--------~~~~~~~--------~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         116 NAN--PE--------RVKNELS--------ELGL---QGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             ccc--HH--------HHHHHHH--------Hhhc---cccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            422  00        0101110        0000   0011222 26899999999999999999987643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>CHL00071 tufA elongation factor Tu

Probab=98.31  E-value=9.8e-06  Score=76.42  Aligned_cols=112  Identities=20%  Similarity=0.311  Sum_probs=67.5

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPH-VNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~-InVlsK~D  144 (236)
                      .+|.++||||.      ++.++..+..+..  .. ++++++|+..--.+. .-+      +.....+++|+ |.|+||+|
T Consensus        75 ~~~~~iDtPGh------~~~~~~~~~~~~~--~D-~~ilVvda~~g~~~qt~~~------~~~~~~~g~~~iIvvvNK~D  139 (409)
T CHL00071         75 RHYAHVDCPGH------ADYVKNMITGAAQ--MD-GAILVVSAADGPMPQTKEH------ILLAKQVGVPNIVVFLNKED  139 (409)
T ss_pred             eEEEEEECCCh------HHHHHHHHHHHHh--CC-EEEEEEECCCCCcHHHHHH------HHHHHHcCCCEEEEEEEccC
Confidence            46899999993      4445556666643  34 588999987432222 111      22334578995 47899999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcc-----------------
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES-----------------  203 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~-----------------  203 (236)
                      +.... +..+                      .+.+.+.+++..++    .+.|+|+|+.++.                 
T Consensus       140 ~~~~~-~~~~----------------------~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~  196 (409)
T CHL00071        140 QVDDE-ELLE----------------------LVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWV  196 (409)
T ss_pred             CCCHH-HHHH----------------------HHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchh
Confidence            97543 2211                      11112222333333    3789999998876                 


Q ss_pred             -cHHHHHHHHHHhh
Q 026584          204 -SIRYVLSQIDNCI  216 (236)
Q Consensus       204 -~i~~L~~~Id~~~  216 (236)
                       ++..|+.+|++..
T Consensus       197 ~~~~~ll~~l~~~~  210 (409)
T CHL00071        197 DKIYNLMDAVDSYI  210 (409)
T ss_pred             hhHHHHHHHHHhhC
Confidence             3567888888754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.31  E-value=1.1e-05  Score=75.73  Aligned_cols=120  Identities=15%  Similarity=0.184  Sum_probs=70.0

Q ss_pred             CCEEEEeCCCceeeeeccchHH-----HHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584           67 DDYLVFDCPGQIELFTHVPVLR-----NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~-----~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls  141 (236)
                      ..|.++||||+..--.......     +-.+.++.  .. ++++++|+..-....+   .-+  +....+.+.|.|.|+|
T Consensus       220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad-~~ilV~D~~~~~~~~~---~~~--~~~~~~~~~~iiiv~N  291 (429)
T TIGR03594       220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIER--AD-VVLLVLDATEGITEQD---LRI--AGLILEAGKALVIVVN  291 (429)
T ss_pred             cEEEEEECCCccccccchhhHHHHHHHHHHHHHHh--CC-EEEEEEECCCCccHHH---HHH--HHHHHHcCCcEEEEEE
Confidence            3689999999754221111111     11223322  33 6899999864222222   111  2223446899999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+|++.....++.                       +.+.+.+.+...+...++++|+.++.++.+++..+.+...
T Consensus       292 K~Dl~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       292 KWDLVKDEKTREE-----------------------FKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CcccCCCHHHHHH-----------------------HHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999832211211                       1111222223334578999999999999999999888643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01894 EngA1 EngA1 subfamily

Probab=98.30  E-value=9.5e-06  Score=64.06  Aligned_cols=109  Identities=10%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             CCEEEEeCCCceeeee-ccchHHH-HHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFT-HVPVLRN-FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~-~~~~~~~-iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..+.++||||+-+.-. ....+.+ ....+.  +.. ++++++|+..-......   .  ....+-+.+.|.+.|+||+|
T Consensus        45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~~d-~ii~v~d~~~~~~~~~~---~--~~~~~~~~~~piiiv~nK~D  116 (157)
T cd01894          45 REFILIDTGGIEPDDEGISKEIREQAELAIE--EAD-VILFVVDGREGLTPADE---E--IAKYLRKSKKPVILVVNKVD  116 (157)
T ss_pred             eEEEEEECCCCCCchhHHHHHHHHHHHHHHH--hCC-EEEEEEeccccCCccHH---H--HHHHHHhcCCCEEEEEECcc
Confidence            3578999999876432 1111111 112232  233 58999998642222111   1  12233456899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... ..                              .+.+...+...++++|+.+++++++++..|-+
T Consensus       117 ~~~~~-~~------------------------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (157)
T cd01894         117 NIKEE-DE------------------------------AAEFYSLGFGEPIPISAEHGRGIGDLLDAILE  155 (157)
T ss_pred             cCChH-HH------------------------------HHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence            96543 11                              01112334447899999999999999988764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.30  E-value=1.8e-05  Score=68.92  Aligned_cols=131  Identities=13%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ...+-++||||+      ....+..+..+...... ++++++|+..- .....-+      +......++|++.|+||+|
T Consensus        83 ~~~i~liDtpG~------~~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d~~~------l~~l~~~~ip~ivvvNK~D  149 (224)
T cd04165          83 SKLVTFIDLAGH------ERYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMTKEH------LGLALALNIPVFVVVTKID  149 (224)
T ss_pred             CcEEEEEECCCc------HHHHHHHHHhhcccCCC-EEEEEEECCCCCcHHHHHH------HHHHHHcCCCEEEEEECcc
Confidence            346899999994      33444555555322223 57889997542 2222222      2334567899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHH----HHHHHH--HHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQF----AKLNKS--LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~----~~l~~~--l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +++.. .+.+.+.    .+...+....-.+.    +.....  .+.-..--..+.++++|+.++++++.|.+.+..
T Consensus       150 ~~~~~-~~~~~~~----~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         150 LAPAN-ILQETLK----DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccCHH-HHHHHHH----HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            97643 2322111    11111110000000    000000  001111122368999999999999999998864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12735 elongation factor Tu; Reviewed

Probab=98.28  E-value=1.1e-05  Score=75.74  Aligned_cols=114  Identities=18%  Similarity=0.324  Sum_probs=69.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~DL  145 (236)
                      .+|.++||||+-      +.++.....+.  +.. ++++++|+..-..+...     -.+.....+++|++. |+||+|+
T Consensus        75 ~~i~~iDtPGh~------~f~~~~~~~~~--~aD-~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~Dl  140 (396)
T PRK12735         75 RHYAHVDCPGHA------DYVKNMITGAA--QMD-GAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM  140 (396)
T ss_pred             cEEEEEECCCHH------HHHHHHHhhhc--cCC-EEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecCC
Confidence            468999999963      33344444442  334 58889998642222211     011223357899885 6999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCc----------ccHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE----------SSIRYVLSQ  211 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~----------~~i~~L~~~  211 (236)
                      ..++ +..                      ..+...+..++..++.    +.|+|+|+.++          +++..|+.+
T Consensus       141 ~~~~-~~~----------------------~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~  197 (396)
T PRK12735        141 VDDE-ELL----------------------ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDA  197 (396)
T ss_pred             cchH-HHH----------------------HHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHH
Confidence            7533 111                      1111122233444443    78999999998          478999999


Q ss_pred             HHHhhc
Q 026584          212 IDNCIQ  217 (236)
Q Consensus       212 Id~~~~  217 (236)
                      +++.+.
T Consensus       198 l~~~~~  203 (396)
T PRK12735        198 VDSYIP  203 (396)
T ss_pred             HHhcCC
Confidence            998765

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.28  E-value=1.4e-05  Score=64.33  Aligned_cols=116  Identities=14%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             CEEEEeCCCceeeeec-cchH-HHHHHHHhhCCCceEEEEeecCCCccc--hhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTH-VPVL-RNFVDHLKSRNFNVCAVYLLDSQFITD--VTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~-~~~~-~~iv~~L~~~~~~~~~V~LiD~~~~~d--p~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      ++.|+|||||.+-..+ +... ...+..+..  ..-++++++|+..-..  ... ...++-.+.... -+.|.|.|+||+
T Consensus        48 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~--~~d~~l~v~d~~~~~~~~~~~-~~~~~~~l~~~~-~~~pvilv~NK~  123 (168)
T cd01897          48 RWQVIDTPGLLDRPLEERNTIEMQAITALAH--LRAAVLFLFDPSETCGYSLEE-QLSLFEEIKPLF-KNKPVIVVLNKI  123 (168)
T ss_pred             EEEEEECCCcCCccccCCchHHHHHHHHHHh--ccCcEEEEEeCCcccccchHH-HHHHHHHHHhhc-CcCCeEEEEEcc
Confidence            6799999998542111 1111 122222321  1226789999864321  111 112222222111 289999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+.... ....                    ..+        ........+++.|+++++++++++..+-+.+
T Consensus       124 Dl~~~~-~~~~--------------------~~~--------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         124 DLLTFE-DLSE--------------------IEE--------EEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCchh-hHHH--------------------HHH--------hhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            996543 1110                    000        1122336799999999999999999887653

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.26  E-value=1e-05  Score=78.30  Aligned_cols=150  Identities=18%  Similarity=0.247  Sum_probs=85.9

Q ss_pred             ChHHHHHHHHHHHHh-h--HHHHHHHhc------ccCCCCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEee
Q 026584           38 PNGGLIYCMEHLEDN-L--DDWLAEELD------NYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLL  107 (236)
Q Consensus        38 PNGalv~~me~l~~n-~--~~wl~~~i~------~~~~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~Li  107 (236)
                      ||.|..+-++.|... .  .+|--..+.      .+.+..|.++||||++|=-. ....+..+++.+.+  .. ++||++
T Consensus       168 PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier--ad-vLv~VV  244 (500)
T PRK12296        168 PSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER--CA-VLVHVV  244 (500)
T ss_pred             CCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh--cC-EEEEEE
Confidence            899888888888631 1  011000111      11134689999999886321 11223445555533  33 689999


Q ss_pred             cCCCcc---chhhHHHHHHHHHHHHh-----------hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchh
Q 026584          108 DSQFIT---DVTKFISGCMASLSAMV-----------QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAP  173 (236)
Q Consensus       108 D~~~~~---dp~~~is~~l~sls~m~-----------~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~  173 (236)
                      |+....   +|-.-+..+.--+....           ..+.|.|.|+||+|+.... ++...           +.     
T Consensus       245 D~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-el~e~-----------l~-----  307 (500)
T PRK12296        245 DCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-ELAEF-----------VR-----  307 (500)
T ss_pred             CCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-HHHHH-----------HH-----
Confidence            987542   34332222222222221           2479999999999986432 11110           00     


Q ss_pred             HHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          174 QFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       174 ~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                                +.+...+ ..++|+|+.++++++.|+..+-+.+.-
T Consensus       308 ----------~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        308 ----------PELEARG-WPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             ----------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                      1112223 579999999999999999988876644

>PRK12736 elongation factor Tu; Reviewed

Probab=98.25  E-value=1.9e-05  Score=74.09  Aligned_cols=114  Identities=21%  Similarity=0.347  Sum_probs=68.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL  145 (236)
                      .+|.++||||+-+      .++..+..+.  ... ++++++|+..-..+...-     .+.....+++|+ |.|+||+|+
T Consensus        75 ~~i~~iDtPGh~~------f~~~~~~~~~--~~d-~~llVvd~~~g~~~~t~~-----~~~~~~~~g~~~~IvviNK~D~  140 (394)
T PRK12736         75 RHYAHVDCPGHAD------YVKNMITGAA--QMD-GAILVVAATDGPMPQTRE-----HILLARQVGVPYLVVFLNKVDL  140 (394)
T ss_pred             cEEEEEECCCHHH------HHHHHHHHHh--hCC-EEEEEEECCCCCchhHHH-----HHHHHHHcCCCEEEEEEEecCC
Confidence            4689999999643      3344445553  233 588899986522232211     122234579996 578999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCc--------ccHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKE--------SSIRYVLSQID  213 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~--------~~i~~L~~~Id  213 (236)
                      .+++ ++.+                      .+.+.+.+++..++    .+.++|+|+.++        .++..|+..++
T Consensus       141 ~~~~-~~~~----------------------~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~  197 (394)
T PRK12736        141 VDDE-ELLE----------------------LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD  197 (394)
T ss_pred             cchH-HHHH----------------------HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHH
Confidence            7433 1111                      01111222233333    378999999997        36889999999


Q ss_pred             Hhhc
Q 026584          214 NCIQ  217 (236)
Q Consensus       214 ~~~~  217 (236)
                      +.++
T Consensus       198 ~~lp  201 (394)
T PRK12736        198 EYIP  201 (394)
T ss_pred             HhCC
Confidence            8765

>cd01890 LepA LepA subfamily

Probab=98.24  E-value=3.5e-05  Score=62.82  Aligned_cols=108  Identities=14%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      ..++|||||.++.   .   .....++  +.. ++++++|+..-.....+ ..+.    .....+.|.+.|+||+|+...
T Consensus        69 ~~l~Dt~G~~~~~---~---~~~~~~~--~ad-~~i~v~D~~~~~~~~~~-~~~~----~~~~~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          69 LNLIDTPGHVDFS---Y---EVSRSLA--ACE-GALLLVDATQGVEAQTL-ANFY----LALENNLEIIPVINKIDLPSA  134 (179)
T ss_pred             EEEEECCCChhhH---H---HHHHHHH--hcC-eEEEEEECCCCccHhhH-HHHH----HHHHcCCCEEEEEECCCCCcC
Confidence            4689999997631   1   1122332  233 58999998642222222 1111    122468999999999998532


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .  ..        ..               .+++++.+ ......++++|+.+++++++|+..+-+.+
T Consensus       135 ~--~~--------~~---------------~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         135 D--PE--------RV---------------KQQIEDVL-GLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             C--HH--------HH---------------HHHHHHHh-CCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            1  00        00               01111111 11113589999999999999999987654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.23  E-value=1e-05  Score=65.75  Aligned_cols=121  Identities=12%  Similarity=0.153  Sum_probs=71.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+...-    +..  .+  .+.. +++++.|..   ++.+|-..   ++-.+. ...-+.|.|.|.||+|
T Consensus        47 ~~~i~Dt~G~~~~~~~----~~~--~~--~~~d-~~ilv~d~~---~~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~D  113 (174)
T smart00174       47 ELGLWDTAGQEDYDRL----RPL--SY--PDTD-VFLICFSVD---SPASFENVKEKWYPEVK-HFCPNTPIILVGTKLD  113 (174)
T ss_pred             EEEEEECCCCcccchh----chh--hc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEecChh
Confidence            3678999999764321    111  12  2333 688888965   44444332   222222 2234899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.........+.......        .   -   .+...++...++...|+++|+++++++++++..+-+.
T Consensus       114 l~~~~~~~~~~~~~~~~~--------v---~---~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  170 (174)
T smart00174      114 LREDKSTLRELSKQKQEP--------V---T---YEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRA  170 (174)
T ss_pred             hhhChhhhhhhhcccCCC--------c---c---HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            976442222222110000        0   0   1112244556677789999999999999999987654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.22  E-value=1.9e-05  Score=75.84  Aligned_cols=115  Identities=21%  Similarity=0.318  Sum_probs=70.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL  145 (236)
                      .+.++||||      |...++.++..+.  ... ++++++|+.- ...|..- -    .+.+...+++|+ |.|+||+|+
T Consensus       118 ~i~~IDtPG------H~~fi~~m~~g~~--~~D-~alLVVda~~g~~~~qT~-e----hl~i~~~lgi~~iIVvlNKiDl  183 (460)
T PTZ00327        118 HVSFVDCPG------HDILMATMLNGAA--VMD-AALLLIAANESCPQPQTS-E----HLAAVEIMKLKHIIILQNKIDL  183 (460)
T ss_pred             eEeeeeCCC------HHHHHHHHHHHHh--hCC-EEEEEEECCCCccchhhH-H----HHHHHHHcCCCcEEEEEecccc
Confidence            589999999      4555666666664  344 4788999974 2223211 0    112223367765 679999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .... .+++.++        +        ++++.+   ..  ......++|+|+.++++++.|+..|++.+..
T Consensus       184 v~~~-~~~~~~~--------e--------i~~~l~---~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        184 VKEA-QAQDQYE--------E--------IRNFVK---GT--IADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             cCHH-HHHHHHH--------H--------HHHHHH---hh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            7533 2211111        1        111111   11  0123799999999999999999999976543

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.22  E-value=9.8e-06  Score=66.33  Aligned_cols=118  Identities=10%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+-++|||||-++...++.      .+  .+.. +++++.|..   ++.+|-..   ++-.+. ...-+.|.+.|.||+|
T Consensus        49 ~~~i~Dt~G~~~~~~~~~~------~~--~~a~-~~i~v~d~~---~~~sf~~~~~~~~~~~~-~~~~~~piilv~nK~D  115 (173)
T cd04130          49 RLQLCDTAGQDEFDKLRPL------CY--PDTD-VFLLCFSVV---NPSSFQNISEKWIPEIR-KHNPKAPIILVGTQAD  115 (173)
T ss_pred             EEEEEECCCChhhcccccc------cc--CCCc-EEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEeeChh
Confidence            4678999999765433221      12  2344 678888864   55555332   222222 2223799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      +.+..+.+..+......        ..  ..    +....+...++...|+++|++++.++++++..+
T Consensus       116 l~~~~~~~~~~~~~~~~--------~v--~~----~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         116 LRTDVNVLIQLARYGEK--------PV--SQ----SRAKALAEKIGACEYIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             hccChhHHHHHhhcCCC--------Cc--CH----HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence            97654322222221000        00  00    011123345566799999999999999998765

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04112 Rab26 Rab26 subfamily

Probab=98.21  E-value=1.9e-05  Score=65.99  Aligned_cols=114  Identities=14%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+-|+|||||-.+.       .+....- .+.. ++++++|+........ +..++..+....+-+.|.+.|.||+|+..
T Consensus        51 ~~~i~Dt~G~~~~~-------~~~~~~~-~~ad-~~i~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~NK~Dl~~  120 (191)
T cd04112          51 KLQIWDTAGQERFR-------SVTHAYY-RDAH-ALLLLYDITNKASFDN-IRAWLTEIKEYAQEDVVIMLLGNKADMSG  120 (191)
T ss_pred             EEEEEeCCCcHHHH-------HhhHHHc-cCCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence            35788999984422       1112221 2334 6889999765332222 23333334333445799999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .. ....      .            ...       .+...++ ..|+++|+.++++++.++..|-+.+.-
T Consensus       121 ~~-~~~~------~------------~~~-------~l~~~~~-~~~~e~Sa~~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         121 ER-VVKR------E------------DGE-------RLAKEYG-VPFMETSAKTGLNVELAFTAVAKELKH  164 (191)
T ss_pred             cc-ccCH------H------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            32 1100      0            001       1223334 479999999999999999999876543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.21  E-value=2.4e-05  Score=77.25  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=73.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-. |.      .+..+. ..... ++++++|+..-..+..+-+     +......++|.|.|+||+|+..
T Consensus        70 ~l~~iDTpG~e~-f~------~l~~~~-~~~aD-~~IlVvD~~~g~~~qt~e~-----i~~l~~~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        70 GLLFIDTPGHEA-FT------NLRKRG-GALAD-LAILIVDINEGFKPQTQEA-----LNILRMYKTPFVVAANKIDRIP  135 (590)
T ss_pred             cEEEEECCCcHh-HH------HHHHHH-HhhCC-EEEEEEECCcCCCHhHHHH-----HHHHHHcCCCEEEEEECCCccc
Confidence            488999999732 32      111111 12233 6888999875444555433     2233456999999999999974


Q ss_pred             chhH--hhhhccccHHHHHHHhhhcchhHHHHHH---------HHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKE--IEDYLNPESQFLLSELNQHMAPQFAKLN---------KSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~--l~~~l~~~~~~l~~~l~~~~~~~~~~l~---------~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ....  -..|++. ....-..+.....+++..+.         ..+...+++|+. +.++|+|+.+++++.+|+..+...
T Consensus       136 ~~~~~~~~~f~e~-sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       136 GWRSHEGRPFMES-FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             hhhhccCchHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            2100  0112110 00000001111111222222         222233456765 899999999999999999988654


Q ss_pred             h
Q 026584          216 I  216 (236)
Q Consensus       216 ~  216 (236)
                      .
T Consensus       215 ~  215 (590)
T TIGR00491       215 A  215 (590)
T ss_pred             H
Confidence            3

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.19  E-value=2.4e-05  Score=73.54  Aligned_cols=114  Identities=18%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~DL  145 (236)
                      .+|.++||||+.      +.++.....+.  ... ++++++|+..-..+...-     .+.....++.|++ .|+||+|+
T Consensus        75 ~~i~~iDtPG~~------~f~~~~~~~~~--~aD-~~llVVDa~~g~~~qt~~-----~~~~~~~~g~p~iiVvvNK~D~  140 (396)
T PRK00049         75 RHYAHVDCPGHA------DYVKNMITGAA--QMD-GAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFLNKCDM  140 (396)
T ss_pred             eEEEEEECCCHH------HHHHHHHhhhc--cCC-EEEEEEECCCCCchHHHH-----HHHHHHHcCCCEEEEEEeecCC
Confidence            468999999953      33344444442  344 588899986532232211     1222344789997 57999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcc----------cHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES----------SIRYVLSQ  211 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~----------~i~~L~~~  211 (236)
                      .++. +..                      ..+...+.+++..++    -+.|+|+|+.++.          ++..|+.+
T Consensus       141 ~~~~-~~~----------------------~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~  197 (396)
T PRK00049        141 VDDE-ELL----------------------ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDA  197 (396)
T ss_pred             cchH-HHH----------------------HHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHH
Confidence            7533 111                      111112223333333    3789999998864          67899999


Q ss_pred             HHHhhc
Q 026584          212 IDNCIQ  217 (236)
Q Consensus       212 Id~~~~  217 (236)
                      |+....
T Consensus       198 l~~~~~  203 (396)
T PRK00049        198 VDSYIP  203 (396)
T ss_pred             HHhcCC
Confidence            998654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.18  E-value=2.4e-05  Score=77.64  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=70.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DLl  146 (236)
                      .+-++|||||-      ...+.++..+.  +.. ++++++|+..--.|...-.     +.....++.|+ |.|+||+|+.
T Consensus        52 ~i~~IDtPGhe------~fi~~m~~g~~--~~D-~~lLVVda~eg~~~qT~eh-----l~il~~lgi~~iIVVlNKiDlv  117 (614)
T PRK10512         52 VLGFIDVPGHE------KFLSNMLAGVG--GID-HALLVVACDDGVMAQTREH-----LAILQLTGNPMLTVALTKADRV  117 (614)
T ss_pred             EEEEEECCCHH------HHHHHHHHHhh--cCC-EEEEEEECCCCCcHHHHHH-----HHHHHHcCCCeEEEEEECCccC
Confidence            35799999972      22344444442  344 4788999865333332211     22334468897 5899999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +.. .++..                       ...+.+.+..+++  ..++|+|+.++++++.|...|++....
T Consensus       118 ~~~-~~~~v-----------------------~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        118 DEA-RIAEV-----------------------RRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CHH-HHHHH-----------------------HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            533 22111                       1122233334443  689999999999999999999986543

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.18  E-value=2.1e-05  Score=62.84  Aligned_cols=113  Identities=16%  Similarity=0.104  Sum_probs=62.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||.+.       +......-+ +. -++++++|+..-.........+..........+.|.+.|.||+|+..
T Consensus        44 ~~~i~D~~G~~~~-------~~~~~~~~~-~~-~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~  114 (158)
T cd00878          44 SFTVWDVGGQDKI-------RPLWKHYYE-NT-NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG  114 (158)
T ss_pred             EEEEEECCCChhh-------HHHHHHHhc-cC-CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence            5789999998753       112222212 23 36888999874321111111111111111135899999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      .. ..        +.+...+..               .......+.++++|++++.++++++..|-
T Consensus       115 ~~-~~--------~~~~~~~~~---------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         115 AL-SV--------SELIEKLGL---------------EKILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             cc-CH--------HHHHHhhCh---------------hhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence            33 11        111111110               00111236899999999999999988774

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.16  E-value=5.9e-05  Score=62.49  Aligned_cols=119  Identities=18%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             CCEEEEeCCCceeeeecc----chHHHHH-HHHhhC-CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTHV----PVLRNFV-DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~----~~~~~iv-~~L~~~-~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .++.|+||||+.. -.+.    .....++ ..++.. +.. .+++++|+..-......   .+  ...+-..++|.+.|+
T Consensus        70 ~~l~l~DtpG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~---~i--~~~l~~~~~~~iiv~  142 (196)
T PRK00454         70 DKLRLVDLPGYGY-AKVSKEEKEKWQKLIEEYLRTRENLK-GVVLLIDSRHPLKELDL---QM--IEWLKEYGIPVLIVL  142 (196)
T ss_pred             CeEEEeCCCCCCC-cCCCchHHHHHHHHHHHHHHhCccce-EEEEEEecCCCCCHHHH---HH--HHHHHHcCCcEEEEE
Confidence            3678999999542 1111    1111222 223222 222 46677886542222211   11  122345789999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ||+|+++.. +...                       ....+.+.+..+ ...++|+|+.+++++++++..|-+.+.
T Consensus       143 nK~Dl~~~~-~~~~-----------------------~~~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        143 TKADKLKKG-ERKK-----------------------QLKKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             ECcccCCHH-HHHH-----------------------HHHHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            999997543 1111                       111222333333 367889999999999999999987653

>PRK09866 hypothetical protein; Provisional

Probab=98.15  E-value=2.7e-05  Score=77.29  Aligned_cols=115  Identities=11%  Similarity=0.172  Sum_probs=70.6

Q ss_pred             CCCEEEEeCCCceeeeec-cc-hHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcC--CCEEEEe
Q 026584           66 DDDYLVFDCPGQIELFTH-VP-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLE--LPHVNIL  140 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~-~~-~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~--lP~InVl  140 (236)
                      ..+++++||||   +... +. ....+.+.+...  . +++|++|+.....+.+ .+.      ..+-+.+  .|++.|+
T Consensus       229 ~~QIIFVDTPG---Ihk~~~~~L~k~M~eqL~eA--D-vVLFVVDat~~~s~~DeeIl------k~Lkk~~K~~PVILVV  296 (741)
T PRK09866        229 PGQLTLLDTPG---PNEAGQPHLQKMLNQQLARA--S-AVLAVLDYTQLKSISDEEVR------EAILAVGQSVPLYVLV  296 (741)
T ss_pred             cCCEEEEECCC---CCCccchHHHHHHHHHHhhC--C-EEEEEEeCCCCCChhHHHHH------HHHHhcCCCCCEEEEE
Confidence            36789999999   5432 22 233455556433  3 6999999976444333 332      2233445  5999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ||+|+.++....       .+.+            .+   .+...+.  .......+|+|+..+.++++|+..|-+
T Consensus       297 NKIDl~dreedd-------kE~L------------le---~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        297 NKFDQQDRNSDD-------ADQV------------RA---LISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             EcccCCCcccch-------HHHH------------HH---HHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            999986433100       0011            00   1111111  223568999999999999999998876

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.14  E-value=3.7e-05  Score=61.46  Aligned_cols=109  Identities=12%  Similarity=0.198  Sum_probs=63.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      +-++|||||.++-.       +.+...+ +.. ++++++|+..   +..|  +..++..+.-. -+-+.|.+.|.||+|+
T Consensus        52 ~~i~Dt~G~~~~~~-------~~~~~~~-~~~-~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl  119 (164)
T cd04145          52 LDILDTAGQEEFSA-------MREQYMR-TGE-GFLLVFSVTD---RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL  119 (164)
T ss_pred             EEEEECCCCcchhH-------HHHHHHh-hCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence            56799999876421       2222212 233 5778888754   3333  33333332222 1247899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ...      ..            .       ..++...++ ..++++|+++++++.+++..+=+.+
T Consensus       120 ~~~~-~~~------~~------------~-------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         120 EHQR-KVS------RE------------E-------GQELARKLK-IPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             cccc-eec------HH------------H-------HHHHHHHcC-CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            6432 110      00            0       011222344 4789999999999999998876544

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03127 Elongation factor Tu; Provisional

Probab=98.14  E-value=4.7e-05  Score=72.84  Aligned_cols=113  Identities=18%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPH-VNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP~-InVlsK~D  144 (236)
                      .+|.++||||+      ++.++..+..+..  .. ++++++|+..--.+.. -+      +.....+++|+ |.|+||+|
T Consensus       124 ~~i~~iDtPGh------~~f~~~~~~g~~~--aD-~allVVda~~g~~~qt~e~------l~~~~~~gip~iIvviNKiD  188 (447)
T PLN03127        124 RHYAHVDCPGH------ADYVKNMITGAAQ--MD-GGILVVSAPDGPMPQTKEH------ILLARQVGVPSLVVFLNKVD  188 (447)
T ss_pred             eEEEEEECCCc------cchHHHHHHHHhh--CC-EEEEEEECCCCCchhHHHH------HHHHHHcCCCeEEEEEEeec
Confidence            36899999995      3455555555533  34 6899999864322222 12      22334578997 67899999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cC--CeeEEEeecc---Ccc-------cHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YS--MVSFMPLDLR---KES-------SIRYVLS  210 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~--lv~f~pls~~---d~~-------~i~~L~~  210 (236)
                      +++.. +..+.+.                      ..+.+++..  |.  .+.|+|+|+.   +++       ++..|+.
T Consensus       189 lv~~~-~~~~~i~----------------------~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~  245 (447)
T PLN03127        189 VVDDE-ELLELVE----------------------MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMD  245 (447)
T ss_pred             cCCHH-HHHHHHH----------------------HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHH
Confidence            97533 2211110                      011112221  21  3788888875   333       4788999


Q ss_pred             HHHHhhc
Q 026584          211 QIDNCIQ  217 (236)
Q Consensus       211 ~Id~~~~  217 (236)
                      ++++.+.
T Consensus       246 ~l~~~lp  252 (447)
T PLN03127        246 AVDEYIP  252 (447)
T ss_pred             HHHHhCC
Confidence            9988764

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.12  E-value=3.4e-05  Score=60.75  Aligned_cols=105  Identities=11%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CEEEEeCCCceeeeeccc--hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVP--VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~--~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ++.++||||+.+.-....  ..++....+.  ..+ ++++++|+.........   .+...    ..+.|.+.|+||+|+
T Consensus        50 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~v~d~~~~~~~~~~---~~~~~----~~~~~vi~v~nK~D~  119 (157)
T cd04164          50 PVRLIDTAGIRETEDEIEKIGIERAREAIE--EAD-LVLFVIDASRGLDEEDL---EILEL----PADKPIIVVLNKSDL  119 (157)
T ss_pred             EEEEEECCCcCCCcchHHHHHHHHHHHHHh--hCC-EEEEEEECCCCCCHHHH---HHHHh----hcCCCEEEEEEchhc
Confidence            578999999877543211  1222223332  334 68899998853322221   11111    468999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..                                 ........++++|++++.+++.++..|.+..
T Consensus       120 ~~~~-~~---------------------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         120 LPDS-EL---------------------------------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             CCcc-cc---------------------------------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            7543 10                                 1122236899999999999999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.11  E-value=3.9e-05  Score=72.32  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             CCEEEEeCCCceeeeeccchH-----HHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584           67 DDYLVFDCPGQIELFTHVPVL-----RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~-----~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls  141 (236)
                      .+|.++||||+..--......     .+-.+.+..  .. ++++++|+..-....+.   -+  +....+.+.|.|.|+|
T Consensus       221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad-~~ilViD~~~~~~~~~~---~i--~~~~~~~~~~~ivv~N  292 (435)
T PRK00093        221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIER--AD-VVLLVIDATEGITEQDL---RI--AGLALEAGRALVIVVN  292 (435)
T ss_pred             eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHH--CC-EEEEEEeCCCCCCHHHH---HH--HHHHHHcCCcEEEEEE
Confidence            468999999963321111111     122233432  23 68999998653222221   11  2233456899999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+|+...+ ....                       +.+.+...+...+...++++|+.++.++.+++..+.+..
T Consensus       293 K~Dl~~~~-~~~~-----------------------~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        293 KWDLVDEK-TMEE-----------------------FKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CccCCCHH-HHHH-----------------------HHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99997432 1111                       111222223333457999999999999999999988754

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.11  E-value=4.3e-05  Score=71.66  Aligned_cols=112  Identities=20%  Similarity=0.332  Sum_probs=65.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~DLl  146 (236)
                      .+.++|||||-.      ..+..+..+.  +.. ++++++|+..-..+...=     .+.....+++|++ .|+||+|+.
T Consensus        76 ~~~liDtpGh~~------f~~~~~~~~~--~~D-~~ilVvda~~g~~~qt~e-----~l~~~~~~gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485        76 HYAHVDCPGHAD------YVKNMITGAA--QMD-GAILVVSATDGPMPQTRE-----HILLARQVGVPYIVVFLNKCDMV  141 (394)
T ss_pred             EEEEEECCchHH------HHHHHHHHHh--hCC-EEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEecccC
Confidence            589999999743      2334444442  333 578899987522233221     1122345699987 579999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcc--------cHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKES--------SIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~--------~i~~L~~~Id~  214 (236)
                      ..+ +..                      ......+.+++..++.    +.++|+|+.++.        ++..|+..+++
T Consensus       142 ~~~-~~~----------------------~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~  198 (394)
T TIGR00485       142 DDE-ELL----------------------ELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE  198 (394)
T ss_pred             CHH-HHH----------------------HHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence            543 111                      0111122233444443    789999998764        45667777776


Q ss_pred             hh
Q 026584          215 CI  216 (236)
Q Consensus       215 ~~  216 (236)
                      ..
T Consensus       199 ~~  200 (394)
T TIGR00485       199 YI  200 (394)
T ss_pred             cC
Confidence            54

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.10  E-value=2.5e-05  Score=62.67  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHH-HHHHhhcCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~s-ls~m~~l~lP~InVlsK~DLl~  147 (236)
                      +-++|||||.++...    +.  ..++.  .+ ++++++|+.....-.. +..+... .....+.+.|.+.|.||+|+..
T Consensus        50 l~i~Dt~g~~~~~~~----~~--~~~~~--~~-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~  119 (164)
T smart00173       50 LDILDTAGQEEFSAM----RD--QYMRT--GE-GFLLVYSITDRQSFEE-IKKFREQILRVKDRDDVPIVLVGNKCDLES  119 (164)
T ss_pred             EEEEECCCcccchHH----HH--HHHhh--CC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            458999999774321    11  12322  33 5678888654222111 1222212 1222234789999999999864


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .. ..    .  .+                   ...++...++ ..++++|+++++++++++..+=+.
T Consensus       120 ~~-~~----~--~~-------------------~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~  160 (164)
T smart00173      120 ER-VV----S--TE-------------------EGKELARQWG-CPFLETSAKERVNVDEAFYDLVRE  160 (164)
T ss_pred             cc-eE----c--HH-------------------HHHHHHHHcC-CEEEEeecCCCCCHHHHHHHHHHH
Confidence            32 11    0  00                   0001222333 689999999999999999887553

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.09  E-value=2.4e-05  Score=67.37  Aligned_cols=106  Identities=17%  Similarity=0.268  Sum_probs=60.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCC-CEEE
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLEL-PHVN  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~l-P~In  138 (236)
                      ..+.++||||+..+      .+..++.++.  .. ++++++|+..-.       .+.. ...    +....+++. |.|.
T Consensus        77 ~~i~liDtpG~~~~------~~~~~~~~~~--~d-~~i~VvDa~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~iii  142 (219)
T cd01883          77 YRFTILDAPGHRDF------VPNMITGASQ--AD-VAVLVVDARKGEFEAGFEKGGQT-REH----ALLARTLGVKQLIV  142 (219)
T ss_pred             eEEEEEECCChHHH------HHHHHHHhhh--CC-EEEEEEECCCCccccccccccch-HHH----HHHHHHcCCCeEEE
Confidence            36799999997442      2344455532  33 689999987521       1111 111    112234564 5677


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR  206 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~  206 (236)
                      |+||+|+......                    ...+.++...+.+.+..++.    +.++|+|+.+++++.
T Consensus       143 vvNK~Dl~~~~~~--------------------~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         143 AVNKMDDVTVNWS--------------------EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEEcccccccccc--------------------HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            9999999742100                    01122233333344555554    789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.09  E-value=4.6e-05  Score=65.01  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=59.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL  145 (236)
                      .++.|+|||||.++.      ..+...++  ... ++++++|+..-......-.     .....+.+.| .|.|+||+|+
T Consensus        77 ~~~~liDTpG~~~~~------~~~~~~~~--~ad-~~llVvD~~~~~~~~~~~~-----~~~~~~~~~~~iIvviNK~D~  142 (208)
T cd04166          77 RKFIIADTPGHEQYT------RNMVTGAS--TAD-LAILLVDARKGVLEQTRRH-----SYILSLLGIRHVVVAVNKMDL  142 (208)
T ss_pred             ceEEEEECCcHHHHH------HHHHHhhh--hCC-EEEEEEECCCCccHhHHHH-----HHHHHHcCCCcEEEEEEchhc
Confidence            478999999975421      23334443  233 5899999864222111110     1112235666 5668999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYV  208 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L  208 (236)
                      .....+                      .+.+....+.+++..++.  ..++|+|+.+++++.+.
T Consensus       143 ~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         143 VDYSEE----------------------VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             ccCCHH----------------------HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            642210                      111112222233444443  67999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.08  E-value=7.8e-05  Score=59.63  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+....    +.  ..+  .+.. ++++++|+.   ++..+-  ..++.++....+-+.|.+.|.||+|+
T Consensus        51 ~~~i~D~~G~~~~~~~----~~--~~~--~~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  118 (163)
T cd01860          51 KFEIWDTAGQERYRSL----AP--MYY--RGAA-AAIVVYDIT---SEESFEKAKSWVKELQRNASPNIIIALVGNKADL  118 (163)
T ss_pred             EEEEEeCCchHHHHHH----HH--HHh--ccCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            4678999998542111    11  122  2344 588999976   444442  23333333333357889999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..      +...            ..       ++...++ +.++++|++++.++.+++..+-+.+
T Consensus       119 ~~~~-~~------~~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         119 ESKR-QV------STEE------------AQ-------EYADENG-LLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             cccC-cC------CHHH------------HH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6422 00      0000            01       1122333 6799999999999999999987654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.08  E-value=5.6e-05  Score=74.57  Aligned_cols=114  Identities=15%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DLl  146 (236)
                      .+-++||||+      ....+..+..+  .+.. ++++++|+..-..|..+-.     +..+-.+++| .|.|+||+|+.
T Consensus        51 ~v~~iDtPGh------e~f~~~~~~g~--~~aD-~aILVVDa~~G~~~qT~eh-----l~il~~lgi~~iIVVlNK~Dlv  116 (581)
T TIGR00475        51 RLGFIDVPGH------EKFISNAIAGG--GGID-AALLVVDADEGVMTQTGEH-----LAVLDLLGIPHTIVVITKADRV  116 (581)
T ss_pred             EEEEEECCCH------HHHHHHHHhhh--ccCC-EEEEEEECCCCCcHHHHHH-----HHHHHHcCCCeEEEEEECCCCC
Confidence            4679999995      22233444444  2344 5888999865322333322     2233457999 88889999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC---CeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS---MVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~---lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      +.. .+..                       ..+.+.+++..++   -..++|+|+.+++++..+...+.+....-
T Consensus       117 ~~~-~~~~-----------------------~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       117 NEE-EIKR-----------------------TEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             CHH-HHHH-----------------------HHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence            533 1111                       1112223333443   36899999999999999999988776544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04151 Arl1 Arl1 subfamily

Probab=98.08  E-value=5.7e-05  Score=60.67  Aligned_cols=110  Identities=14%  Similarity=0.113  Sum_probs=60.0

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~D  144 (236)
                      -.+-++|||||-++       +.+.. .+  .+.+ ++++++|+......... ...+..+ .....-+.|.+.|+||+|
T Consensus        43 ~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~-~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D  111 (158)
T cd04151          43 LKFQVWDLGGQTSI-------RPYWRCYY--SNTD-AIIYVVDSTDRDRLGTA-KEELHAMLEEEELKGAVLLVFANKQD  111 (158)
T ss_pred             EEEEEEECCCCHHH-------HHHHHHHh--cCCC-EEEEEEECCCHHHHHHH-HHHHHHHHhchhhcCCcEEEEEeCCC
Confidence            35789999998542       11112 22  2344 58999997643221111 1111111 111113789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      +.+.. ...        .+...+.                 ...+.  -..++|+|+.+++++++++..+-
T Consensus       112 l~~~~-~~~--------~i~~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         112 MPGAL-SEA--------EISEKLG-----------------LSELKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             CCCCC-CHH--------HHHHHhC-----------------ccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence            86432 000        0000000                 00111  14799999999999999998763

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=2.8e-05  Score=73.13  Aligned_cols=105  Identities=20%  Similarity=0.356  Sum_probs=76.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-------cchhhHHHHHHHHHHHHhhcCCCEEEE-
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-------TDVTKFISGCMASLSAMVQLELPHVNI-  139 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-------~dp~~~is~~l~sls~m~~l~lP~InV-  139 (236)
                      .|=|+||||      |++..++.+.-.++.+   ++|+++||..-       ..+...-.++|..     .+++.++-| 
T Consensus        86 ~~tIiDaPG------HrdFvknmItGasqAD---~aVLVV~a~~~efE~g~~~~gQtrEH~~La~-----tlGi~~lIVa  151 (428)
T COG5256          86 NFTIIDAPG------HRDFVKNMITGASQAD---VAVLVVDARDGEFEAGFGVGGQTREHAFLAR-----TLGIKQLIVA  151 (428)
T ss_pred             eEEEeeCCc------hHHHHHHhhcchhhcc---EEEEEEECCCCccccccccCCchhHHHHHHH-----hcCCceEEEE
Confidence            468999999      8898888888775544   69999999765       4555555444322     268999887 


Q ss_pred             ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHHH
Q 026584          140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRYV  208 (236)
Q Consensus       140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~L  208 (236)
                      +||+|+++-.                      ..+|.++...+..++..++.    +.|+|+|+-.++++...
T Consensus       152 vNKMD~v~wd----------------------e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         152 VNKMDLVSWD----------------------EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             EEcccccccC----------------------HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            8999998622                      13555555666666767765    68999999999998753

>cd01893 Miro1 Miro1 subfamily

Probab=98.05  E-value=6.3e-05  Score=61.11  Aligned_cols=113  Identities=9%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ++.++||||+-+...   .   ....++  +.. ++++++|+.   ++..|-..  ......-..+.+.|.+.|.||+|+
T Consensus        48 ~~~i~Dt~G~~~~~~---~---~~~~~~--~ad-~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl  115 (166)
T cd01893          48 PTTIVDTSSRPQDRA---N---LAAEIR--KAN-VICLVYSVD---RPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL  115 (166)
T ss_pred             EEEEEeCCCchhhhH---H---Hhhhcc--cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence            468999999765321   1   112232  234 467788854   55555442  222222222348999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ...        .+               ...+..+...+.. ..+++.|+.++.++++++..+.++.
T Consensus       116 ~~~~-~~~--------~~---------------~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         116 RDGS-SQA--------GL---------------EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             cccc-chh--------HH---------------HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence            6543 100        00               0001111222322 4799999999999999999998865

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.05  E-value=4.9e-05  Score=58.82  Aligned_cols=109  Identities=14%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ...++|||||.+.....       ....+ +. ...+..+|.... .+........+..+.-....+.|.+.|+||+|+.
T Consensus        51 ~~~~~D~~G~~~~~~~~-------~~~~~-~~-~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  121 (161)
T TIGR00231        51 KFNLLDTAGQEDYRAIR-------RLYYR-AV-ESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR  121 (161)
T ss_pred             EEEEEECCCcccchHHH-------HHHHh-hh-hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC
Confidence            35789999987643321       11111 11 235556666554 3333333233333332233389999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      ...  ..                          ......+...+...++|+|+.+++++..++..|.
T Consensus       122 ~~~--~~--------------------------~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       122 DAK--LK--------------------------THVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             cch--hh--------------------------HHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            432  00                          0111223344456799999999999999998875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.04  E-value=2.5e-05  Score=61.57  Aligned_cols=103  Identities=12%  Similarity=0.178  Sum_probs=59.1

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      -++|||||.  ..+....+.+...+  .+.. ++++++|+..-.   .+....+..     .++.|.|.|+||+||.+..
T Consensus        38 ~~iDt~G~~--~~~~~~~~~~~~~~--~~ad-~vilv~d~~~~~---s~~~~~~~~-----~~~~p~ilv~NK~Dl~~~~  104 (142)
T TIGR02528        38 GAIDTPGEY--VENRRLYSALIVTA--ADAD-VIALVQSATDPE---SRFPPGFAS-----IFVKPVIGLVTKIDLAEAD  104 (142)
T ss_pred             eeecCchhh--hhhHHHHHHHHHHh--hcCC-EEEEEecCCCCC---cCCChhHHH-----hccCCeEEEEEeeccCCcc
Confidence            689999982  12222233333333  2344 588889974322   222111111     1245999999999986422


Q ss_pred             hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                       .       ..    +               ...+..+..+...++++|+++++++++++..+
T Consensus       105 -~-------~~----~---------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528       105 -V-------DI----E---------------RAKELLETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             -c-------CH----H---------------HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence             0       00    0               00122233455578999999999999999876

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01862 Rab7 Rab7 subfamily

Probab=98.03  E-value=4.2e-05  Score=61.61  Aligned_cols=112  Identities=13%  Similarity=0.239  Sum_probs=63.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh---hHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT---KFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~---~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +-++|||||.....   .   ....++  +.. ++++++|+.......   .+...++..+......+.|.+.|+||+|+
T Consensus        51 ~~~~D~~g~~~~~~---~---~~~~~~--~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  121 (172)
T cd01862          51 LQIWDTAGQERFQS---L---GVAFYR--GAD-CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL  121 (172)
T ss_pred             EEEEeCCChHHHHh---H---HHHHhc--CCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence            45899999743211   1   112232  333 689999976432211   11211111111111237899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... ..    .  .+                   .+..+.+.++.+.++++|+.++++++.++..|-+.
T Consensus       122 ~~~~-~~----~--~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  165 (172)
T cd01862         122 EEKR-QV----S--TK-------------------KAQQWCQSNGNIPYFETSAKEAINVEQAFETIARK  165 (172)
T ss_pred             cccc-cc----C--HH-------------------HHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            7422 00    0  00                   01122335556899999999999999999998764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.03  E-value=0.00018  Score=61.94  Aligned_cols=147  Identities=16%  Similarity=0.191  Sum_probs=90.1

Q ss_pred             ChHHHHHHHHHHHHhhH-HHHHHHhcc------cC-CCCEEEEeCCCceeeeeccc--------hHHHHHHHHhh-CCCc
Q 026584           38 PNGGLIYCMEHLEDNLD-DWLAEELDN------YL-DDDYLVFDCPGQIELFTHVP--------VLRNFVDHLKS-RNFN  100 (236)
Q Consensus        38 PNGalv~~me~l~~n~~-~wl~~~i~~------~~-~~~Yil~D~PGQiElf~~~~--------~~~~iv~~L~~-~~~~  100 (236)
                      -|-|....++-|..+-. --..+..+.      +. .+.+.++|.||    |=+..        ..+.+.++|+. .+..
T Consensus        33 SNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPG----YGyAkv~k~~~e~w~~~i~~YL~~R~~L~  108 (200)
T COG0218          33 SNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPG----YGYAKVPKEVKEKWKKLIEEYLEKRANLK  108 (200)
T ss_pred             CcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCC----cccccCCHHHHHHHHHHHHHHHhhchhhe
Confidence            47777777777765220 111111111      11 34488999999    64333        34557778863 4554


Q ss_pred             eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                       .+|.|+|+.+.....+-     .-+..+...++|++.|+||+|.+++.+ -                       .+...
T Consensus       109 -~vvlliD~r~~~~~~D~-----em~~~l~~~~i~~~vv~tK~DKi~~~~-~-----------------------~k~l~  158 (200)
T COG0218         109 -GVVLLIDARHPPKDLDR-----EMIEFLLELGIPVIVVLTKADKLKKSE-R-----------------------NKQLN  158 (200)
T ss_pred             -EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEccccCChhH-H-----------------------HHHHH
Confidence             57889999886655433     124556678999999999999987541 1                       11111


Q ss_pred             HHHHHhh-ccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          181 SLIELVD-EYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       181 ~l~~li~-d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .+++-+. .+.- ..++..|+..+.++++|...|.+.+..
T Consensus       159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2222222 2222 238899999999999999999887643

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.03  E-value=3.6e-05  Score=63.03  Aligned_cols=101  Identities=15%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             EEEeCCCceeeeeccchHHH-HHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~-iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      -.|||||   =|.-++.+.+ ++..  +.+.. ++++|.|+..  ..-|..|.+.          +..|+|-|+||+|+.
T Consensus        39 ~~IDTPG---EyiE~~~~y~aLi~t--a~dad-~V~ll~dat~~~~~~pP~fa~~----------f~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   39 NTIDTPG---EYIENPRFYHALIVT--AQDAD-VVLLLQDATEPRSVFPPGFASM----------FNKPVIGVITKIDLP  102 (143)
T ss_pred             cEEECCh---hheeCHHHHHHHHHH--HhhCC-EEEEEecCCCCCccCCchhhcc----------cCCCEEEEEECccCc
Confidence            4599999   4665555444 3333  23555 5899999965  3456666643          578999999999998


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      ++..++++                           ..+.+..-|.-..+++|+.+++++++|...+.
T Consensus       103 ~~~~~i~~---------------------------a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  103 SDDANIER---------------------------AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             cchhhHHH---------------------------HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            44322221                           01233444666779999999999999998875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01878 HflX HflX subfamily

Probab=98.03  E-value=7.6e-05  Score=62.72  Aligned_cols=114  Identities=18%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHh-hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~-~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.++||||+.+-..+. ....+...+. ..+.. ++++++|+..-..... +..+.-.+..+-.-+.|.+.|+||+|+.
T Consensus        90 ~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d-~ii~v~D~~~~~~~~~-~~~~~~~l~~~~~~~~~viiV~NK~Dl~  166 (204)
T cd01878          90 EVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEAD-LLLHVVDASDPDYEEQ-IETVEKVLKELGAEDIPMILVLNKIDLL  166 (204)
T ss_pred             eEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCC-eEEEEEECCCCChhhH-HHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence            78999999987643321 1122222221 12334 5889999864222111 2222222222222368999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ...                              ... .-....++++|+.++.++..++..|.+.+
T Consensus       167 ~~~-~~~------------------------------~~~-~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         167 DDE-ELE------------------------------ERL-EAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             ChH-HHH------------------------------HHh-hcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            543 110                              000 11235799999999999999999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.02  E-value=1.7e-05  Score=63.25  Aligned_cols=109  Identities=12%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~D  144 (236)
                      .+.++|||||.+.-..      .-..+ + +.+ ++++++|..   ++..|-  ..++..+..+. ..+.|.+.|.||+|
T Consensus        49 ~~~i~D~~g~~~~~~~------~~~~~-~-~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D  116 (164)
T cd04139          49 QLNILDTAGQEDYAAI------RDNYH-R-SGE-GFLLVFSIT---DMESFTATAEFREQILRVKDDDNVPLLLVGNKCD  116 (164)
T ss_pred             EEEEEECCChhhhhHH------HHHHh-h-cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence            4889999998753211      11123 2 233 467777754   444432  22222222221 35899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.... ..      ...            ...       .....++ ..++++|+.+++++++++..+-+.
T Consensus       117 ~~~~~-~~------~~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  160 (164)
T cd04139         117 LEDKR-QV------SSE------------EAA-------NLARQWG-VPYVETSAKTRQNVEKAFYDLVRE  160 (164)
T ss_pred             ccccc-cc------CHH------------HHH-------HHHHHhC-CeEEEeeCCCCCCHHHHHHHHHHH
Confidence            96521 00      000            000       1112223 478999999999999999988654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.01  E-value=0.00011  Score=69.29  Aligned_cols=112  Identities=16%  Similarity=0.272  Sum_probs=66.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELP-HVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL  145 (236)
                      .+-++|||||-+      ..+.++..+..  .. ++++++|+..-. .+...-.     +.....++.+ .|.|+||+|+
T Consensus        81 ~i~liDtPGh~~------f~~~~~~g~~~--aD-~aIlVVDa~~g~~~~qt~e~-----l~~l~~~gi~~iIVvvNK~Dl  146 (406)
T TIGR03680        81 RVSFVDAPGHET------LMATMLSGAAL--MD-GALLVIAANEPCPQPQTKEH-----LMALEIIGIKNIVIVQNKIDL  146 (406)
T ss_pred             EEEEEECCCHHH------HHHHHHHHHHH--CC-EEEEEEECCCCccccchHHH-----HHHHHHcCCCeEEEEEEcccc
Confidence            578999999744      23444555432  33 589999997421 2222111     1112335555 6888999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ....                   .+.+    +.+++..+  .-+.++|+|+.++++++.|+..+++.+.
T Consensus       147 ~~~~-~~~~-------------------~~~~----i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       147 VSKE-KALE-------------------NYEE----IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             CCHH-HHHH-------------------HHHH----HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            7543 1110                   0011    11122222  1368999999999999999999998654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.01  E-value=0.00011  Score=61.17  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~DLl  146 (236)
                      .+-++|||||-. |      +.+....- .+.. ++++++|+.......... ..+..+ ......+.|.+.|+||+|+.
T Consensus        53 ~l~l~Dt~G~~~-~------~~~~~~~~-~~~d-~ii~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~  122 (183)
T cd04152          53 TFHFWDVGGQEK-L------RPLWKSYT-RCTD-GIVFVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLP  122 (183)
T ss_pred             EEEEEECCCcHh-H------HHHHHHHh-ccCC-EEEEEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence            468899999832 1      11222221 2333 589999965432222211 122111 22234689999999999985


Q ss_pred             cch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ...  .++..++.                    +.    + ...+....++|+|+++++++++++..|-+.+
T Consensus       123 ~~~~~~~~~~~~~--------------------~~----~-~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         123 NALSVSEVEKLLA--------------------LH----E-LSASTPWHVQPACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             ccCCHHHHHHHhC--------------------cc----c-cCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence            321  01111100                    00    0 0111225689999999999999998876544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.00  E-value=0.00011  Score=70.64  Aligned_cols=149  Identities=13%  Similarity=0.158  Sum_probs=81.2

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHHHHHHH---hh-CCCceEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL---KS-RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L---~~-~~~~~~~  103 (236)
                      ||-|.-.-++.|...-.........          .+....|.|+||||+..-.... .+......+   .. .+.. ++
T Consensus       220 ~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~-~~~e~~~~~~~~~~i~~ad-~v  297 (472)
T PRK03003        220 PNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQA-SGHEYYASLRTHAAIEAAE-VA  297 (472)
T ss_pred             CCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccccccc-chHHHHHHHHHHHHHhcCC-EE
Confidence            7777777777776431011111100          1113358899999974322211 111111111   11 1333 68


Q ss_pred             EEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          104 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       104 V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      ++++|+..-....+.   -+  +.....-+.|.|.|+||+||.... ...                       .+...+.
T Consensus       298 ilV~Da~~~~s~~~~---~~--~~~~~~~~~piIiV~NK~Dl~~~~-~~~-----------------------~~~~~i~  348 (472)
T PRK03003        298 VVLIDASEPISEQDQ---RV--LSMVIEAGRALVLAFNKWDLVDED-RRY-----------------------YLEREID  348 (472)
T ss_pred             EEEEeCCCCCCHHHH---HH--HHHHHHcCCCEEEEEECcccCChh-HHH-----------------------HHHHHHH
Confidence            899998643222221   11  222334689999999999997532 110                       0111111


Q ss_pred             HHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +-+.......++++|++++.++++++..|.+.+.
T Consensus       349 ~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        349 RELAQVPWAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             HhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2222233467899999999999999999988653

>cd01861 Rab6 Rab6 subfamily

Probab=98.00  E-value=0.00012  Score=58.46  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||...       +.+....-+ +.. ++++++|+..-..+.. +..++..+.....-+.|.+.|.||+|+..
T Consensus        50 ~l~~~D~~G~~~~-------~~~~~~~~~-~~~-~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iilv~nK~D~~~  119 (161)
T cd01861          50 RLQLWDTAGQERF-------RSLIPSYIR-DSS-VAVVVYDITNRQSFDN-TDKWIDDVRDERGNDVIIVLVGNKTDLSD  119 (161)
T ss_pred             EEEEEECCCcHHH-------HHHHHHHhc-cCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence            4689999997542       122222212 233 5888888754322222 22232222211112599999999999963


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .. ..      ..+            ....       +....+ ..++++|++++++++.++..|-+.
T Consensus       120 ~~-~~------~~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         120 KR-QV------STE------------EGEK-------KAKELN-AMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             cC-cc------CHH------------HHHH-------HHHHhC-CEEEEEeCCCCCCHHHHHHHHHHh
Confidence            32 10      000            0011       112233 678999999999999999998664

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.99  E-value=5.7e-05  Score=72.22  Aligned_cols=115  Identities=17%  Similarity=0.283  Sum_probs=69.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCCCEE-E
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELPHV-N  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~lP~I-n  138 (236)
                      ..+.|+||||+      .+..+..+..+..  .. ++++++|+..=.       .+..-     -.+.....+++|++ .
T Consensus        85 ~~i~lIDtPGh------~~f~~~~~~g~~~--aD-~ailVVda~~G~~e~~~~~~~qT~-----eh~~~~~~~gi~~iiv  150 (446)
T PTZ00141         85 YYFTIIDAPGH------RDFIKNMITGTSQ--AD-VAILVVASTAGEFEAGISKDGQTR-----EHALLAFTLGVKQMIV  150 (446)
T ss_pred             eEEEEEECCCh------HHHHHHHHHhhhh--cC-EEEEEEEcCCCceecccCCCccHH-----HHHHHHHHcCCCeEEE
Confidence            35789999994      4445666666633  33 578899986311       11111     11223345799985 7


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH-------
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY-------  207 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~-------  207 (236)
                      |+||+|...-.     |-+               .+|.+..+.+.+.+...++    +.|+|+|+.+++++..       
T Consensus       151 ~vNKmD~~~~~-----~~~---------------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~W  210 (446)
T PTZ00141        151 CINKMDDKTVN-----YSQ---------------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPW  210 (446)
T ss_pred             EEEccccccch-----hhH---------------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcc
Confidence            89999953110     000               1233334444455554444    7899999999999964       


Q ss_pred             -----HHHHHHHh
Q 026584          208 -----VLSQIDNC  215 (236)
Q Consensus       208 -----L~~~Id~~  215 (236)
                           |+.++++.
T Consensus       211 y~G~tL~~~l~~~  223 (446)
T PTZ00141        211 YKGPTLLEALDTL  223 (446)
T ss_pred             cchHHHHHHHhCC
Confidence                 88888875

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.99  E-value=9.5e-05  Score=77.14  Aligned_cols=131  Identities=22%  Similarity=0.283  Sum_probs=71.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      ..++|||||-. |+.   ++  ....  .... ++++++|+..--.+..+-+     +....+.+.|.|.|+||+|+...
T Consensus       528 i~fiDTPGhe~-F~~---lr--~~g~--~~aD-ivlLVVDa~~Gi~~qT~e~-----I~~lk~~~iPiIVViNKiDL~~~  593 (1049)
T PRK14845        528 LLFIDTPGHEA-FTS---LR--KRGG--SLAD-LAVLVVDINEGFKPQTIEA-----INILRQYKTPFVVAANKIDLIPG  593 (1049)
T ss_pred             EEEEECCCcHH-HHH---HH--Hhhc--ccCC-EEEEEEECcccCCHhHHHH-----HHHHHHcCCCEEEEEECCCCccc
Confidence            79999999633 321   11  1111  2233 5888999865334544433     23344568999999999999742


Q ss_pred             hh-----HhhhhccccHHHHHHHhhhcchhHHHHHHH---------HHHHHhhccCC-eeEEEeeccCcccHHHHHHHHH
Q 026584          149 KK-----EIEDYLNPESQFLLSELNQHMAPQFAKLNK---------SLIELVDEYSM-VSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       149 ~~-----~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~---------~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id  213 (236)
                      ..     .+..-+.........++..    +..++..         ....-+++|+- +.++|+|+.++++|..|+..|-
T Consensus       594 ~~~~~~~~~~~~~~~q~~~~~~el~~----~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~  669 (1049)
T PRK14845        594 WNISEDEPFLLNFNEQDQHALTELEI----KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA  669 (1049)
T ss_pred             cccccchhhhhhhhhhHHHHHHHHHH----HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence            10     0100001011111111110    1111111         11122456655 8999999999999999998886


Q ss_pred             Hhhc
Q 026584          214 NCIQ  217 (236)
Q Consensus       214 ~~~~  217 (236)
                      ..-|
T Consensus       670 ~l~~  673 (1049)
T PRK14845        670 GLAQ  673 (1049)
T ss_pred             HhhH
Confidence            5433

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.98  E-value=7.6e-05  Score=70.40  Aligned_cols=113  Identities=24%  Similarity=0.359  Sum_probs=64.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL  145 (236)
                      .++.++||||+      .+..+.+...+..  .. ++++++|+..=-.+...=-     +.....++.|+ |.|+||+|+
T Consensus        80 ~~~~liDtPGh------~~f~~~~~~~~~~--aD-~allVVda~~G~~~qt~~~-----~~~~~~~~~~~iivviNK~D~  145 (406)
T TIGR02034        80 RKFIVADTPGH------EQYTRNMATGAST--AD-LAVLLVDARKGVLEQTRRH-----SYIASLLGIRHVVLAVNKMDL  145 (406)
T ss_pred             eEEEEEeCCCH------HHHHHHHHHHHhh--CC-EEEEEEECCCCCccccHHH-----HHHHHHcCCCcEEEEEEeccc
Confidence            46899999994      3344445555533  33 5889999864222221100     11122346764 668999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHH------------HHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRY------------VLSQ  211 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~------------L~~~  211 (236)
                      .....+                      .+.+....+.+++..++.  +.++|+|+.+++++..            |+..
T Consensus       146 ~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~  203 (406)
T TIGR02034       146 VDYDEE----------------------VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEI  203 (406)
T ss_pred             ccchHH----------------------HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHH
Confidence            742211                      111111122223333333  6899999999999875            6777


Q ss_pred             HHHh
Q 026584          212 IDNC  215 (236)
Q Consensus       212 Id~~  215 (236)
                      ++..
T Consensus       204 L~~~  207 (406)
T TIGR02034       204 LETV  207 (406)
T ss_pred             HHhc
Confidence            7754

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.97  E-value=0.00026  Score=55.90  Aligned_cols=118  Identities=16%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             CEEEEeCCCceeeeec---cchHHH-HHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTH---VPVLRN-FVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~---~~~~~~-iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      .+.++||||--..-..   ...... +...++. .+.. .+++++|......+...-     ....+...+.|.+.|+||
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~-----~~~~l~~~~~~vi~v~nK  119 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLK-GVVLLIDSRHGPTEIDLE-----MLDWLEELGIPFLVVLTK  119 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhh-EEEEEEEcCcCCCHhHHH-----HHHHHHHcCCCEEEEEEc
Confidence            6789999993322111   011111 1222322 2233 467788876543222211     123334468999999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh-ccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~-d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +|+.+.. +...                   ....    +...++ ......++|+|+.++.++.++...|.+.
T Consensus       120 ~D~~~~~-~~~~-------------------~~~~----~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         120 ADKLKKS-ELAK-------------------ALKE----IKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hhcCChH-HHHH-------------------HHHH----HHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            9997543 1111                   0111    112222 2334789999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.96  E-value=4.9e-05  Score=62.87  Aligned_cols=121  Identities=13%  Similarity=0.163  Sum_probs=69.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ...|+|||||-+...    ++..  .+  .+.. +++++.|+.   ++.+|-+.   ++..+.. ..-+.|.|.|.||+|
T Consensus        50 ~l~i~Dt~G~~~~~~----~~~~--~~--~~~d-~~ilv~d~~---~~~sf~~~~~~~~~~~~~-~~~~~piilvgnK~D  116 (174)
T cd01871          50 NLGLWDTAGQEDYDR----LRPL--SY--PQTD-VFLICFSLV---SPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD  116 (174)
T ss_pred             EEEEEECCCchhhhh----hhhh--hc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChh
Confidence            357999999854322    1111  12  2333 688889974   45555443   2222222 223799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      |.+.+...++....        ......      .....++..+++...|++.|+++++++++++..+-+.
T Consensus       117 l~~~~~~~~~~~~~--------~~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         117 LRDDKDTIEKLKEK--------KLTPIT------YPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             hccChhhHHHHhhc--------cCCCCC------HHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            96433222221110        000000      1112244456676799999999999999999887653

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04136 Rap_like Rap-like subfamily

Probab=97.96  E-value=7.3e-05  Score=59.67  Aligned_cols=108  Identities=14%  Similarity=0.209  Sum_probs=61.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      +-|+|||||-++..    ++.  ..++  +.. ++++++|...   +..|  +..++..+.... .-+.|.+.|.||+|+
T Consensus        51 l~i~Dt~G~~~~~~----~~~--~~~~--~~~-~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  118 (163)
T cd04136          51 LEILDTAGTEQFTA----MRD--LYIK--NGQ-GFVLVYSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL  118 (163)
T ss_pred             EEEEECCCccccch----HHH--HHhh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            35799999865322    111  1122  233 5677778643   3333  222222222111 137899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... ..    .  .            ...    .   ++...++ ..++++|+++++++.+++..+-+.
T Consensus       119 ~~~~-~~----~--~------------~~~----~---~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         119 EDER-VV----S--R------------EEG----Q---ALARQWG-CPFYETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             cccc-ee----c--H------------HHH----H---HHHHHcC-CeEEEecCCCCCCHHHHHHHHHHh
Confidence            6432 11    0  0            000    0   1223455 789999999999999999887553

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.96  E-value=8.8e-05  Score=61.33  Aligned_cols=109  Identities=18%  Similarity=0.262  Sum_probs=58.4

Q ss_pred             CCEEEEeCCCceeeeec---cchHHHHH-HHHhhC-CCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTH---VPVLRNFV-DHLKSR-NFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~---~~~~~~iv-~~L~~~-~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .++.++||||+-+-..-   +.....++ ..++.. ... ++++++|+.. .......+      +...-..+.|++.|+
T Consensus        64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ii~vvd~~~~~~~~~~~~------~~~~~~~~~pviiv~  136 (179)
T TIGR03598        64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLK-GVVLLMDIRHPLKELDLEM------LEWLRERGIPVLIVL  136 (179)
T ss_pred             CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhc-EEEEEecCCCCCCHHHHHH------HHHHHHcCCCEEEEE
Confidence            35789999995432211   11122222 233221 233 5899999864 22222211      122234689999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHH
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIR  206 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~  206 (236)
                      ||+|+.... +....                       ...+.+.+...+. .+++|+|+.++++++
T Consensus       137 nK~D~~~~~-~~~~~-----------------------~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       137 TKADKLKKS-ELNKQ-----------------------LKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             ECcccCCHH-HHHHH-----------------------HHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            999997533 22110                       0111122222333 589999999999863

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.95  E-value=0.00019  Score=60.36  Aligned_cols=111  Identities=16%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHH--HHHHHh----hcCCCEEEEec
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA--SLSAMV----QLELPHVNILS  141 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~--sls~m~----~l~lP~InVls  141 (236)
                      .+.++|||||-. |      +.+....- .+.. ++++++|+   +++..|-...-+  .+....    .-++|.|.|.|
T Consensus        51 ~l~l~Dt~G~~~-~------~~~~~~~~-~~a~-~~ilv~D~---t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N  118 (201)
T cd04107          51 RLQLWDIAGQER-F------GGMTRVYY-RGAV-GAIIVFDV---TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN  118 (201)
T ss_pred             EEEEEECCCchh-h------hhhHHHHh-CCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence            357899999832 2      11112221 2343 68888995   556665543211  121111    24789999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+|+.... ..      ..                   ..+.++...++...+++.|+++++++++++..+-+.+
T Consensus       119 K~Dl~~~~-~~------~~-------------------~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l  167 (201)
T cd04107         119 KCDLKKRL-AK------DG-------------------EQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI  167 (201)
T ss_pred             CCCccccc-cc------CH-------------------HHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99996422 00      00                   0111233455667899999999999999999887754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00154 Rab Rab family

Probab=97.95  E-value=0.00024  Score=55.43  Aligned_cols=109  Identities=13%  Similarity=0.232  Sum_probs=62.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ++.++|||||.+   +.    ......- .+.. ++++++|+..... -..+..++..+......+.|.+.|+||+|+..
T Consensus        50 ~~~l~D~~g~~~---~~----~~~~~~~-~~~d-~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  119 (159)
T cd00154          50 KLQIWDTAGQER---FR----SITPSYY-RGAH-GAILVYDITNRES-FENLDKWLKELKEYAPENIPIILVGNKIDLED  119 (159)
T ss_pred             EEEEEecCChHH---HH----HHHHHHh-cCCC-EEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCcEEEEEEcccccc
Confidence            367899999832   11    1222221 2334 5899999865222 22233333323222224699999999999962


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      .. ..      ..            ...+++..       . ....++.+|+++++++++++..|-
T Consensus       120 ~~-~~------~~------------~~~~~~~~-------~-~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         120 QR-QV------ST------------EEAQQFAK-------E-NGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cc-cc------cH------------HHHHHHHH-------H-cCCeEEEEecCCCCCHHHHHHHHh
Confidence            22 00      00            01111111       1 236899999999999999998763

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04175 Rap1 Rap1 subgroup

Probab=97.95  E-value=0.0001  Score=59.26  Aligned_cols=110  Identities=12%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl~  147 (236)
                      +-|+|||||-++...    +..  .++  +.. ++++++|+........ +..++..+.-. ..-++|.+.|.||+|+..
T Consensus        51 l~i~Dt~G~~~~~~~----~~~--~~~--~~d-~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  120 (164)
T cd04175          51 LEILDTAGTEQFTAM----RDL--YMK--NGQ-GFVLVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDLED  120 (164)
T ss_pred             EEEEECCCcccchhH----HHH--HHh--hCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence            358999999653321    111  122  233 5777888643222221 22222222211 124799999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .. ..    .  ..            .    ..   ++.+.++ ..|+++|++++.++.+++..|=+.
T Consensus       121 ~~-~~----~--~~------------~----~~---~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~  161 (164)
T cd04175         121 ER-VV----G--KE------------Q----GQ---NLARQWG-CAFLETSAKAKINVNEIFYDLVRQ  161 (164)
T ss_pred             cc-EE----c--HH------------H----HH---HHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHH
Confidence            32 11    0  00            0    00   1112233 579999999999999999987553

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.94  E-value=5.7e-05  Score=71.37  Aligned_cols=113  Identities=17%  Similarity=0.335  Sum_probs=63.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELP-HVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~  143 (236)
                      ..+.++|||||-. |     .+.+...+.  +.. ++++++|+.-  -..+...-     .+.....++.| .+.|+||+
T Consensus        84 ~~i~liDtpG~~~-~-----~~~~~~~~~--~aD-~~ilVvDa~~~~~~~~~~~~-----~~~~~~~~~~~~iivviNK~  149 (425)
T PRK12317         84 YYFTIVDCPGHRD-F-----VKNMITGAS--QAD-AAVLVVAADDAGGVMPQTRE-----HVFLARTLGINQLIVAINKM  149 (425)
T ss_pred             eEEEEEECCCccc-c-----hhhHhhchh--cCC-EEEEEEEcccCCCCCcchHH-----HHHHHHHcCCCeEEEEEEcc
Confidence            3679999999733 2     223333342  233 6889999864  11111111     11112345665 67789999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH------------
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY------------  207 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~------------  207 (236)
                      |+.....+                      .+....+.+.+++..+++    +.++|+|+.+++++.+            
T Consensus       150 Dl~~~~~~----------------------~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~  207 (425)
T PRK12317        150 DAVNYDEK----------------------RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPT  207 (425)
T ss_pred             ccccccHH----------------------HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHH
Confidence            99752200                      111122222233444443    6899999999999986            


Q ss_pred             HHHHHHHh
Q 026584          208 VLSQIDNC  215 (236)
Q Consensus       208 L~~~Id~~  215 (236)
                      |+.+++..
T Consensus       208 L~~~l~~~  215 (425)
T PRK12317        208 LLEALDNL  215 (425)
T ss_pred             HHHHHhcC
Confidence            77777653

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.94  E-value=8.1e-05  Score=56.58  Aligned_cols=111  Identities=12%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ...++|||||.+.....      ...+  .+.. ++++++|+..-................+...+.|.+.|+||+|+..
T Consensus        46 ~~~l~D~~g~~~~~~~~------~~~~--~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~  116 (157)
T cd00882          46 KLQIWDTAGQERFRSLR------RLYY--RGAD-GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE  116 (157)
T ss_pred             EEEEEecCChHHHHhHH------HHHh--cCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence            57899999987643321      1122  2333 5788899875443333332222345566778999999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      .. .....                  .       ............++++|+.++.++..++..|-
T Consensus       117 ~~-~~~~~------------------~-------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         117 ER-VVSEE------------------E-------LAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cc-chHHH------------------H-------HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            43 11100                  0       11122234458999999999999999998764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.94  E-value=0.00016  Score=60.51  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-++..   ..   ...++  +.. ++++++|+..-..+..  . .+  +......+.|.+.|+||+|+..
T Consensus        66 ~~~l~DtpG~~~~~~---~~---~~~~~--~~d-~~ilV~d~~~~~~~~~--~-~~--~~~~~~~~~p~iiv~NK~Dl~~  131 (194)
T cd01891          66 KINIVDTPGHADFGG---EV---ERVLS--MVD-GVLLLVDASEGPMPQT--R-FV--LKKALELGLKPIVVINKIDRPD  131 (194)
T ss_pred             EEEEEECCCcHHHHH---HH---HHHHH--hcC-EEEEEEECCCCccHHH--H-HH--HHHHHHcCCCEEEEEECCCCCC
Confidence            578999999865321   11   12232  233 5788999864211111  1 11  1222346899999999999964

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.93  E-value=0.00018  Score=56.29  Aligned_cols=111  Identities=20%  Similarity=0.271  Sum_probs=61.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHH-HHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMAS-LSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~s-ls~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||.+.       +.+....-+ +.. ++++++|+..   +..+-..  .+.. +......+.|++.|+||+|
T Consensus        45 ~~~~~D~~g~~~~-------~~~~~~~~~-~~d-~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  112 (159)
T cd04159          45 TLKVWDLGGQPRF-------RSMWERYCR-GVN-AIVYVVDAAD---RTALEAAKNELHDLLEKPSLEGIPLLVLGNKND  112 (159)
T ss_pred             EEEEEECCCCHhH-------HHHHHHHHh-cCC-EEEEEEECCC---HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcc
Confidence            4689999998542       222222212 333 5888999754   3332211  1111 1111225789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.+.. ....        +...+..              .... ...++++++|++++.+++.++..|.+
T Consensus       113 ~~~~~-~~~~--------~~~~~~~--------------~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         113 LPGAL-SVDE--------LIEQMNL--------------KSIT-DREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCc-CHHH--------HHHHhCc--------------cccc-CCceEEEEEEeccCCChHHHHHHHhh
Confidence            86532 1111        0010100              0001 12268899999999999999988754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.93  E-value=0.00016  Score=72.80  Aligned_cols=148  Identities=14%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHHHHHh-hHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHHHHHHH---hh-CCCceE
Q 026584           38 PNGGLIYCMEHLEDN-LDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL---KS-RNFNVC  102 (236)
Q Consensus        38 PNGalv~~me~l~~n-~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L---~~-~~~~~~  102 (236)
                      ||.|.-.-++.|... . ....+...          .+...+|.++||||+.+-.... .+......+   .. .... +
T Consensus       459 ~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~-~~~e~~~~~r~~~~i~~ad-v  535 (712)
T PRK09518        459 PNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL-TGAEYYSSLRTQAAIERSE-L  535 (712)
T ss_pred             CCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccc-hhHHHHHHHHHHHHhhcCC-E
Confidence            788888888877643 1 11111110          1223468899999976533221 111222222   11 1233 5


Q ss_pred             EEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          103 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       103 ~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      +++++|+..-....+.   -+  +....+.+.|.|.|+||+||.+.. ...                       .+.+.+
T Consensus       536 vilViDat~~~s~~~~---~i--~~~~~~~~~piIiV~NK~DL~~~~-~~~-----------------------~~~~~~  586 (712)
T PRK09518        536 ALFLFDASQPISEQDL---KV--MSMAVDAGRALVLVFNKWDLMDEF-RRQ-----------------------RLERLW  586 (712)
T ss_pred             EEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEEEchhcCChh-HHH-----------------------HHHHHH
Confidence            7899998653322221   11  122345689999999999997532 110                       011111


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ...+...+....+++|+.++.++..|+..|.++..
T Consensus       587 ~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~  621 (712)
T PRK09518        587 KTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALE  621 (712)
T ss_pred             HHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            11122233467799999999999999999988754

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.92  E-value=0.0002  Score=67.81  Aligned_cols=112  Identities=14%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL  145 (236)
                      .+.++|||||-+      ..+..+..+.  +.. ++++++|+..-. .+...-..     .....+++ |.+.|+||+|+
T Consensus        86 ~i~liDtPG~~~------f~~~~~~~~~--~~D-~~llVVDa~~~~~~~~t~~~l-----~~l~~~~i~~iiVVlNK~Dl  151 (411)
T PRK04000         86 RVSFVDAPGHET------LMATMLSGAA--LMD-GAILVIAANEPCPQPQTKEHL-----MALDIIGIKNIVIVQNKIDL  151 (411)
T ss_pred             EEEEEECCCHHH------HHHHHHHHHh--hCC-EEEEEEECCCCCCChhHHHHH-----HHHHHcCCCcEEEEEEeecc
Confidence            578999999743      2233333332  334 589999987421 23222211     11224566 47888999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ....                   .+.    .+.+++..+  .-+.++|+|+.+++++..|+..|++.+.
T Consensus       152 ~~~~-~~~~-------------------~~~----~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        152 VSKE-RALE-------------------NYE----QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             ccch-hHHH-------------------HHH----HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            7543 1110                   000    111222222  1368999999999999999999998653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.92  E-value=7.9e-05  Score=71.29  Aligned_cols=114  Identities=20%  Similarity=0.364  Sum_probs=69.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--cc-----chhhHHHHHHHHHHHHhhcCCCE-EEE
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--IT-----DVTKFISGCMASLSAMVQLELPH-VNI  139 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~-----dp~~~is~~l~sls~m~~l~lP~-InV  139 (236)
                      .+-++|||||.+      ..+..+..+..  .. +++.++|+..  +.     .+.. .-    .+.....+++|+ |.|
T Consensus        86 ~i~liDtPGh~d------f~~~~~~g~~~--aD-~aIlVVda~~G~~e~g~~~~~qT-~e----h~~~~~~~gi~~iIV~  151 (447)
T PLN00043         86 YCTVIDAPGHRD------FIKNMITGTSQ--AD-CAVLIIDSTTGGFEAGISKDGQT-RE----HALLAFTLGVKQMICC  151 (447)
T ss_pred             EEEEEECCCHHH------HHHHHHhhhhh--cc-EEEEEEEcccCceecccCCCchH-HH----HHHHHHHcCCCcEEEE
Confidence            578999999544      44555555633  33 5788899864  11     0111 11    122233479987 667


Q ss_pred             ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH--------
Q 026584          140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY--------  207 (236)
Q Consensus       140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~--------  207 (236)
                      +||+|+....     |               ...+|.+..+++.+++...++    +.|+|+|+.+++++.+        
T Consensus       152 vNKmD~~~~~-----~---------------~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy  211 (447)
T PLN00043        152 CNKMDATTPK-----Y---------------SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY  211 (447)
T ss_pred             EEcccCCchh-----h---------------hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCccc
Confidence            9999985211     0               012344444455556665553    7899999999999853        


Q ss_pred             ----HHHHHHHh
Q 026584          208 ----VLSQIDNC  215 (236)
Q Consensus       208 ----L~~~Id~~  215 (236)
                          |+.++|+.
T Consensus       212 ~g~tLl~~l~~i  223 (447)
T PLN00043        212 KGPTLLEALDQI  223 (447)
T ss_pred             chHHHHHHHhhc
Confidence                77777764

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.92  E-value=0.00012  Score=67.93  Aligned_cols=140  Identities=16%  Similarity=0.242  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhc----------cc-CCCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELD----------NY-LDDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~----------~~-~~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V  104 (236)
                      ||-|...-++.|...- -+..+.+.          .+ ....+.++||||++.-..+.  ...+...+.+.  +.. +++
T Consensus       198 ~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~--~AD-lil  273 (351)
T TIGR03156       198 TNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR--EAD-LLL  273 (351)
T ss_pred             CCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH--hCC-EEE
Confidence            8999999999887531 11112211          11 12368999999985422221  12223333332  334 589


Q ss_pred             EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      +++|+..-..... +..+.--+...-..+.|.+.|+||+|+.... .+.                       .+      
T Consensus       274 ~VvD~s~~~~~~~-~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~-----------------------~~------  322 (351)
T TIGR03156       274 HVVDASDPDREEQ-IEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIE-----------------------RL------  322 (351)
T ss_pred             EEEECCCCchHHH-HHHHHHHHHHhccCCCCEEEEEEeecCCChH-hHH-----------------------HH------
Confidence            9999854322221 2221111211112378999999999996432 110                       00      


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                       ..  +...++++|++++++++.|...|.+.
T Consensus       323 -~~--~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       323 -EE--GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             -Hh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence             00  11357999999999999999998664

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.91  E-value=0.00019  Score=59.25  Aligned_cols=116  Identities=11%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+...       + ..+.-.+.. ++++++|+..   +..|-..   ++-.. ....-+.|.|.|.||+|
T Consensus        50 ~l~i~Dt~G~~~~~~-------~-~~~~~~~ad-~ii~v~d~~~---~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~D  116 (187)
T cd04132          50 ELALWDTAGQEEYDR-------L-RPLSYPDVD-VLLICYAVDN---PTSLDNVEDKWFPEV-NHFCPGTPIMLVGLKTD  116 (187)
T ss_pred             EEEEEECCCchhHHH-------H-HHHhCCCCC-EEEEEEECCC---HHHHHHHHHHHHHHH-HHhCCCCCEEEEEeChh
Confidence            357889999865221       1 111112344 6888999754   4444322   22222 12234799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |.... ...+....                     ....++...++...+++.|+++++++.+++..+-+....
T Consensus       117 l~~~~-~~~~~v~~---------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         117 LRKDK-NLDRKVTP---------------------AQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             hhhCc-cccCCcCH---------------------HHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            96532 11111110                     001123345565589999999999999999888775443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.90  E-value=0.00012  Score=70.49  Aligned_cols=105  Identities=21%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCC-CEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLEL-PHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~l-P~InVlsK~D  144 (236)
                      .+|.++||||+      .+..+.....+.  ... ++++++|+..--.+ ..-...      ....+++ |.|.|+||+|
T Consensus       107 ~~i~~iDTPGh------~~f~~~~~~~l~--~aD-~allVVDa~~G~~~qt~~~~~------l~~~lg~~~iIvvvNKiD  171 (474)
T PRK05124        107 RKFIIADTPGH------EQYTRNMATGAS--TCD-LAILLIDARKGVLDQTRRHSF------IATLLGIKHLVVAVNKMD  171 (474)
T ss_pred             cEEEEEECCCc------HHHHHHHHHHHh--hCC-EEEEEEECCCCccccchHHHH------HHHHhCCCceEEEEEeec
Confidence            47899999993      344445555553  233 58999998642222 111111      1122345 4677999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC---CeeEEEeeccCcccHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS---MVSFMPLDLRKESSIRYV  208 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~---lv~f~pls~~d~~~i~~L  208 (236)
                      +.+...+                      .+.++...+..++..++   ...++|+|+.+++++..+
T Consensus       172 ~~~~~~~----------------------~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        172 LVDYSEE----------------------VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cccchhH----------------------HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            9742211                      11111112222233332   378999999999998763

>cd00876 Ras Ras family

Probab=97.89  E-value=0.00016  Score=57.13  Aligned_cols=109  Identities=16%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHH-HHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLS-AMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls-~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||.+....+      -..++  +.. ++++++|+..   +..+  +..+...+. ...+.+.|.+.|.||+|
T Consensus        48 ~~~l~D~~g~~~~~~~~------~~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  115 (160)
T cd00876          48 TLDILDTAGQEEFSAMR------DLYIR--QGD-GFILVYSITD---RESFEEIKGYREQILRVKDDEDIPIVLVGNKCD  115 (160)
T ss_pred             EEEEEECCChHHHHHHH------HHHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence            35689999987722211      12232  233 4677778643   3332  222222222 22225899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.+.. ..    .  .+                   .+.++...++ ..++++|+++++++..++..|-+.
T Consensus       116 ~~~~~-~~----~--~~-------------------~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         116 LENER-QV----S--KE-------------------EGKALAKEWG-CPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             ccccc-ee----c--HH-------------------HHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHhh
Confidence            97522 11    0  00                   0001111222 679999999999999999987543

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.89  E-value=0.00027  Score=56.35  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHH-HhhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSA-MVQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~-m~~l~lP~InVlsK~  143 (236)
                      .+.++|||||-++       +.... .++  +.+ ++|+++|+..   +..+-.  ..+..+.. ...-+.|.+.|+||+
T Consensus        45 ~l~i~D~~G~~~~-------~~~~~~~~~--~~~-~iv~v~D~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  111 (160)
T cd04156          45 SLTVWDVGGQEKM-------RTVWKCYLE--NTD-GLVYVVDSSD---EARLDESQKELKHILKNEHIKGVPVVLLANKQ  111 (160)
T ss_pred             EEEEEECCCCHhH-------HHHHHHHhc--cCC-EEEEEEECCc---HHHHHHHHHHHHHHHhchhhcCCCEEEEEECc
Confidence            5788999998542       11112 232  334 5889999764   332222  12222111 111489999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      |+.... .        ...+...+.  .           .+.... .-..++|.|++++++++.++..|-
T Consensus       112 Dl~~~~-~--------~~~i~~~~~--~-----------~~~~~~-~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         112 DLPGAL-T--------AEEITRRFK--L-----------KKYCSD-RDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             ccccCc-C--------HHHHHHHcC--C-----------cccCCC-CcEEEEecccccCCChHHHHHHHh
Confidence            985321 0        001100000  0           001111 125789999999999999998874

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK04213 GTP-binding protein; Provisional

Probab=97.88  E-value=0.00017  Score=60.37  Aligned_cols=125  Identities=18%  Similarity=0.304  Sum_probs=62.6

Q ss_pred             CEEEEeCCCceeeeeccch----HHHHHH-HHh-hCCCceEEEEeecCCCccch-hhHH-----HHHHHHHHHHhhcCCC
Q 026584           68 DYLVFDCPGQIELFTHVPV----LRNFVD-HLK-SRNFNVCAVYLLDSQFITDV-TKFI-----SGCMASLSAMVQLELP  135 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~----~~~iv~-~L~-~~~~~~~~V~LiD~~~~~dp-~~~i-----s~~l~sls~m~~l~lP  135 (236)
                      ++.++||||.-.+-.+...    .+.+.. .+. ..+.-.++++++|+....+. ..+.     ..-.-........++|
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p  132 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP  132 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence            5899999996322222211    222111 121 11222467889998543221 1110     0000001111235899


Q ss_pred             EEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHH
Q 026584          136 HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       136 ~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id  213 (236)
                      .+.|+||+|+.....+.           ..++.           +.+ ++-..|.-  ..++|+|+.++ ++++++..|-
T Consensus       133 ~iiv~NK~Dl~~~~~~~-----------~~~~~-----------~~~-~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~  188 (201)
T PRK04213        133 PIVAVNKMDKIKNRDEV-----------LDEIA-----------ERL-GLYPPWRQWQDIIAPISAKKG-GIEELKEAIR  188 (201)
T ss_pred             eEEEEECccccCcHHHH-----------HHHHH-----------HHh-cCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence            99999999986432000           00000           000 00001111  35899999999 9999999987


Q ss_pred             Hhh
Q 026584          214 NCI  216 (236)
Q Consensus       214 ~~~  216 (236)
                      +.+
T Consensus       189 ~~~  191 (201)
T PRK04213        189 KRL  191 (201)
T ss_pred             Hhh
Confidence            754

>cd04127 Rab27A Rab27a subfamily

Probab=97.88  E-value=0.00027  Score=57.75  Aligned_cols=108  Identities=13%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh---cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ---LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~---l~lP~InVlsK~D  144 (236)
                      .+-|+|||||-+..       .+....- .+.. ++++++|+.   ++.+|....-+--.+.-+   -+.|.+.|.||+|
T Consensus        64 ~~~i~Dt~G~~~~~-------~~~~~~~-~~~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D  131 (180)
T cd04127          64 HLQLWDTAGQERFR-------SLTTAFF-RDAM-GFLLIFDLT---NEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKAD  131 (180)
T ss_pred             EEEEEeCCChHHHH-------HHHHHHh-CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCcc
Confidence            46799999986521       1112221 2343 588899964   566655432211111111   2689999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.+.. ...      .+            .       ..++...++ +.++++|+++++++++++..+-+
T Consensus       132 l~~~~-~v~------~~------------~-------~~~~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         132 LEDQR-QVS------EE------------Q-------AKALADKYG-IPYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             chhcC-ccC------HH------------H-------HHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence            96432 110      00            0       011222334 47999999999999999988854

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PRK11058 GTPase HflX; Provisional

Probab=97.87  E-value=0.00011  Score=69.87  Aligned_cols=144  Identities=16%  Similarity=0.244  Sum_probs=80.2

Q ss_pred             ChHHHHHHHHHHHHh-h--HHH-------HHHHhcccCC-CCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDN-L--DDW-------LAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n-~--~~w-------l~~~i~~~~~-~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~  105 (236)
                      ||.|.-.-++.|... .  .++       ....+. ... ...+++||||++..-. ++....+...++. .+.. ++++
T Consensus       206 ~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~-l~~~~~~~l~DTaG~~r~lp-~~lve~f~~tl~~~~~AD-lIL~  282 (426)
T PRK11058        206 TNAGKSTLFNRITEARVYAADQLFATLDPTLRRID-VADVGETVLADTVGFIRHLP-HDLVAAFKATLQETRQAT-LLLH  282 (426)
T ss_pred             CCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEE-eCCCCeEEEEecCcccccCC-HHHHHHHHHHHHHhhcCC-EEEE
Confidence            899999999998742 1  011       111111 112 2679999999754222 2223334444432 2344 5899


Q ss_pred             eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026584          106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL  185 (236)
Q Consensus       106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l  185 (236)
                      ++|+..-..... +..+.--+..+-..+.|.+.|+||+|+.+.. ..         .    ..     .           
T Consensus       283 VvDaS~~~~~e~-l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-~~---------~----~~-----~-----------  331 (426)
T PRK11058        283 VVDAADVRVQEN-IEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-EP---------R----ID-----R-----------  331 (426)
T ss_pred             EEeCCCccHHHH-HHHHHHHHHHhccCCCCEEEEEEcccCCCch-hH---------H----HH-----H-----------
Confidence            999854221111 1111111111222479999999999996432 00         0    00     0           


Q ss_pred             hhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          186 VDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                       ...+.-.++++|+.++++++.|+..|.+.+
T Consensus       332 -~~~~~~~~v~ISAktG~GIdeL~e~I~~~l  361 (426)
T PRK11058        332 -DEENKPIRVWLSAQTGAGIPLLFQALTERL  361 (426)
T ss_pred             -HhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence             011222257899999999999999998876

>cd04154 Arl2 Arl2 subfamily

Probab=97.86  E-value=0.00023  Score=58.19  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHH-HHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLS-AMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls-~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-.+.   ...   -..+  .+.. ++++++|+..-   ..|-.  ..+..+. ....-+.|.+.|.||+|
T Consensus        59 ~l~l~D~~G~~~~~---~~~---~~~~--~~~d-~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (173)
T cd04154          59 KLNIWDVGGQKTLR---PYW---RNYF--ESTD-ALIWVVDSSDR---LRLDDCKRELKELLQEERLAGATLLILANKQD  126 (173)
T ss_pred             EEEEEECCCCHHHH---HHH---HHHh--CCCC-EEEEEEECCCH---HHHHHHHHHHHHHHhChhhcCCCEEEEEECcc
Confidence            35789999985421   111   1223  2333 68999997543   22221  1111111 11125799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh-ccCCeeEEEeeccCcccHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~-d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      +.... ..        +.+...+                +... .-..+.++++|++++++++.++..+
T Consensus       127 l~~~~-~~--------~~~~~~~----------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  170 (173)
T cd04154         127 LPGAL-SE--------EEIREAL----------------ELDKISSHHWRIQPCSAVTGEGLLQGIDWL  170 (173)
T ss_pred             cccCC-CH--------HHHHHHh----------------CccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence            96432 00        0000000                0000 1123689999999999999998875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.86  E-value=0.00016  Score=71.87  Aligned_cols=112  Identities=22%  Similarity=0.325  Sum_probs=64.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELP-HVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP-~InVlsK~D  144 (236)
                      .++.++||||+-      ...+.++..+..  .. ++++++|+..-..+.. -..      .....++.| .|.|+||+|
T Consensus       104 ~~~~liDtPG~~------~f~~~~~~~~~~--aD-~~llVvda~~g~~~~t~e~~------~~~~~~~~~~iivvvNK~D  168 (632)
T PRK05506        104 RKFIVADTPGHE------QYTRNMVTGAST--AD-LAIILVDARKGVLTQTRRHS------FIASLLGIRHVVLAVNKMD  168 (632)
T ss_pred             ceEEEEECCChH------HHHHHHHHHHHh--CC-EEEEEEECCCCccccCHHHH------HHHHHhCCCeEEEEEEecc
Confidence            368999999943      333444455533  33 5788999864322221 111      112234665 456899999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHH------------HHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIR------------YVLS  210 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~------------~L~~  210 (236)
                      +.+...+                      .+......+.+++..+++  +.++|+|+.+++++.            .|+.
T Consensus       169 ~~~~~~~----------------------~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~  226 (632)
T PRK05506        169 LVDYDQE----------------------VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLE  226 (632)
T ss_pred             cccchhH----------------------HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHH
Confidence            9752211                      111112222233444444  679999999999987            3777


Q ss_pred             HHHHh
Q 026584          211 QIDNC  215 (236)
Q Consensus       211 ~Id~~  215 (236)
                      .++..
T Consensus       227 ~l~~~  231 (632)
T PRK05506        227 HLETV  231 (632)
T ss_pred             HHhcC
Confidence            77764

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.86  E-value=0.00014  Score=74.00  Aligned_cols=144  Identities=17%  Similarity=0.302  Sum_probs=84.3

Q ss_pred             ChHHHHHHHHHHHHhh---HHHH----HHHhc--ccCCCCEEEEeCCCceeeeeccc--hHHHHH--HHHhhCCCceEEE
Q 026584           38 PNGGLIYCMEHLEDNL---DDWL----AEELD--NYLDDDYLVFDCPGQIELFTHVP--VLRNFV--DHLKSRNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~n~---~~wl----~~~i~--~~~~~~Yil~D~PGQiElf~~~~--~~~~iv--~~L~~~~~~~~~V  104 (236)
                      ||-|.-+-+|-+...-   ..|-    +.+-.  .....++.++||||+-++-....  +....+  +++...... +++
T Consensus        12 pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD-~vI   90 (772)
T PRK09554         12 PNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD-LLI   90 (772)
T ss_pred             CCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC-EEE
Confidence            8888888888886321   0121    00100  11133689999999876543211  222222  222222344 579


Q ss_pred             EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      +++|+..... ..++      +.-..++++|.|.|+||+|+.++. ....                   ...++.     
T Consensus        91 ~VvDat~ler-~l~l------~~ql~e~giPvIvVlNK~Dl~~~~-~i~i-------------------d~~~L~-----  138 (772)
T PRK09554         91 NVVDASNLER-NLYL------TLQLLELGIPCIVALNMLDIAEKQ-NIRI-------------------DIDALS-----  138 (772)
T ss_pred             EEecCCcchh-hHHH------HHHHHHcCCCEEEEEEchhhhhcc-CcHH-------------------HHHHHH-----
Confidence            9999976432 2221      223456899999999999986433 1110                   011111     


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                        +.++ +.++|+|+.++++++++...|++..+
T Consensus       139 --~~LG-~pVvpiSA~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        139 --ARLG-CPVIPLVSTRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             --HHhC-CCEEEEEeecCCCHHHHHHHHHHhhh
Confidence              1222 57899999999999999999998753

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.85  E-value=0.00032  Score=57.88  Aligned_cols=113  Identities=15%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      .+.+.|||||-+       .+.+....- .+.+ +++|++|+.   ++..+-.+  .+..+..... -+.|.+.|.||+|
T Consensus        58 ~l~l~D~~G~~~-------~~~~~~~~~-~~ad-~ii~v~D~t---~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  125 (175)
T smart00177       58 SFTVWDVGGQDK-------IRPLWRHYY-TNTQ-GLIFVVDSN---DRDRIDEAREELHRMLNEDELRDAVILVFANKQD  125 (175)
T ss_pred             EEEEEECCCChh-------hHHHHHHHh-CCCC-EEEEEEECC---CHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence            578999999844       122222221 2444 689999965   44443222  1111111111 2589999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |.... .        .+.+...+.  .           .. +.+. .+.++|.|+++++++.+++..|-+.+
T Consensus       126 l~~~~-~--------~~~i~~~~~--~-----------~~-~~~~-~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      126 LPDAM-K--------AAEITEKLG--L-----------HS-IRDR-NWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             cccCC-C--------HHHHHHHhC--c-----------cc-cCCC-cEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            85321 0        001101010  0           00 1111 25688999999999999999986653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN03126 Elongation factor Tu; Provisional

Probab=97.83  E-value=0.00038  Score=67.25  Aligned_cols=113  Identities=18%  Similarity=0.311  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D  144 (236)
                      +..|.++||||+-.      .++..+..+..  .. ++++++|+.--..+..-     -.+.....+++|+ |.|+||+|
T Consensus       143 ~~~i~liDtPGh~~------f~~~~~~g~~~--aD-~ailVVda~~G~~~qt~-----e~~~~~~~~gi~~iIvvvNK~D  208 (478)
T PLN03126        143 NRHYAHVDCPGHAD------YVKNMITGAAQ--MD-GAILVVSGADGPMPQTK-----EHILLAKQVGVPNMVVFLNKQD  208 (478)
T ss_pred             CcEEEEEECCCHHH------HHHHHHHHHhh--CC-EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEeccc
Confidence            34689999999644      44555666633  33 57889998743222221     1122334569996 56799999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcc-----------------
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES-----------------  203 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~-----------------  203 (236)
                      +...+ +.                      +..+...+.+++..++    -+.|+|+|+.++.                 
T Consensus       209 l~~~~-~~----------------------~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy  265 (478)
T PLN03126        209 QVDDE-EL----------------------LELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWV  265 (478)
T ss_pred             ccCHH-HH----------------------HHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchh
Confidence            97533 11                      1111122333344432    3789999988763                 


Q ss_pred             -cHHHHHHHHHHh
Q 026584          204 -SIRYVLSQIDNC  215 (236)
Q Consensus       204 -~i~~L~~~Id~~  215 (236)
                       ++..|+.++++.
T Consensus       266 ~~i~~Ll~~l~~~  278 (478)
T PLN03126        266 DKIYELMDAVDSY  278 (478)
T ss_pred             hhHHHHHHHHHHh
Confidence             255788888864

>cd04157 Arl6 Arl6 subfamily

Probab=97.83  E-value=0.00026  Score=56.43  Aligned_cols=110  Identities=15%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHH---HHhhcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLS---AMVQLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls---~m~~l~lP~InVlsK  142 (236)
                      ..-++|||||-+.-.   ..   -..+  .+.+ ++++++|+.   ++..+-.  ..+-.+.   .+..-++|.+.|+||
T Consensus        46 ~~~l~Dt~G~~~~~~---~~---~~~~--~~~d-~ii~v~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK  113 (162)
T cd04157          46 SFTAFDMSGQGKYRG---LW---EHYY--KNIQ-GIIFVIDSS---DRLRLVVVKDELELLLNHPDIKHRRVPILFFANK  113 (162)
T ss_pred             EEEEEECCCCHhhHH---HH---HHHH--ccCC-EEEEEEeCC---cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeC
Confidence            357999999865211   11   1123  2344 588999975   3333311  1111111   111247999999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      +|+.+.. ...        .+...+.             +.+. . -....++++|+++++++++++..|-
T Consensus       114 ~Dl~~~~-~~~--------~~~~~l~-------------~~~~-~-~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         114 MDLPDAL-TAV--------KITQLLG-------------LENI-K-DKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             ccccCCC-CHH--------HHHHHhC-------------Cccc-c-CceEEEEEeeCCCCCchHHHHHHHh
Confidence            9996432 100        0000000             0000 0 1125789999999999999998873

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.82  E-value=0.00026  Score=56.73  Aligned_cols=108  Identities=17%  Similarity=0.301  Sum_probs=62.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ++.++|||||-+ |.      .+.+..- .+.. ++++++|..   ++..|  +..++..+.. .+.+.|.|.|.||+|+
T Consensus        53 ~l~i~Dt~G~~~-~~------~~~~~~~-~~~d-~ii~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl  119 (164)
T cd04101          53 ELFIFDSAGQEL-YS------DMVSNYW-ESPS-VFILVYDVS---NKASFENCSRWVNKVRT-ASKHMPGVLVGNKMDL  119 (164)
T ss_pred             EEEEEECCCHHH-HH------HHHHHHh-CCCC-EEEEEEECc---CHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccc
Confidence            578999999722 21      1122221 2333 688999965   34333  2333322222 2257999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.. +...                  .....+       ...++ ..++++|+.++.+++.++..+-+.
T Consensus       120 ~~~~-~~~~------------------~~~~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  162 (164)
T cd04101         120 ADKA-EVTD------------------AQAQAF-------AQANQ-LKFFKTSALRGVGYEEPFESLARA  162 (164)
T ss_pred             cccc-CCCH------------------HHHHHH-------HHHcC-CeEEEEeCCCCCChHHHHHHHHHH
Confidence            6432 1100                  000011       11223 468999999999999999887654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.81  E-value=0.00013  Score=69.40  Aligned_cols=139  Identities=11%  Similarity=0.124  Sum_probs=91.9

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcccC----------CCCEEEEeCCCceeeeecc--chHHHHHHHHh-h-CCCceEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDNYL----------DDDYLVFDCPGQIELFTHV--PVLRNFVDHLK-S-RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~~~----------~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~-~-~~~~~~~  103 (236)
                      ||-|..+-+|-|...=....++..+-..          ...+.+|||+|   +--..  ...+.+-+.-. . .... ++
T Consensus        12 PNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgG---l~~~~~~~l~~~i~~Qa~~Ai~eAD-vi   87 (444)
T COG1160          12 PNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGG---LDDGDEDELQELIREQALIAIEEAD-VI   87 (444)
T ss_pred             CCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCC---CCcCCchHHHHHHHHHHHHHHHhCC-EE
Confidence            8999999999888432155554433211          23589999999   33222  23333333322 1 1233 69


Q ss_pred             EEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          104 VYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       104 V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      +|++|+..--+| ...++.+      +.+.+.|.|.|.||+|-.+.+...                              
T Consensus        88 lfvVD~~~Git~~D~~ia~~------Lr~~~kpviLvvNK~D~~~~e~~~------------------------------  131 (444)
T COG1160          88 LFVVDGREGITPADEEIAKI------LRRSKKPVILVVNKIDNLKAEELA------------------------------  131 (444)
T ss_pred             EEEEeCCCCCCHHHHHHHHH------HHhcCCCEEEEEEcccCchhhhhH------------------------------
Confidence            999999884444 4445433      335679999999999986332100                              


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                       .-...+|+-..+|+|+.-+.|+.+|+..+=+.++
T Consensus       132 -~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         132 -YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             -HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence             1124677789999999999999999999999887

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.81  E-value=0.00013  Score=59.13  Aligned_cols=124  Identities=10%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-+....+..      .+  .+.. +++++.|.....+-..+...++-.+ ....-+.|.+.|.||+|+..
T Consensus        50 ~l~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~~~~~~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~  119 (175)
T cd01870          50 ELALWDTAGQEDYDRLRPL------SY--PDTD-VILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRN  119 (175)
T ss_pred             EEEEEeCCCchhhhhcccc------cc--CCCC-EEEEEEECCCHHHHHHHHHHHHHHH-HhhCCCCCEEEEeeChhccc
Confidence            4689999998543221111      12  1233 3455555443221112111122111 11224899999999999875


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ..........         ... ..-.    .....++...++...|++.|++++.++++++..|-++
T Consensus       120 ~~~~~~~i~~---------~~~-~~v~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         120 DEHTRRELAK---------MKQ-EPVK----PEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             Chhhhhhhhh---------ccC-CCcc----HHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence            4311111100         000 0000    0111122344566789999999999999999988754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.80  E-value=0.0004  Score=56.27  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=59.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~  143 (236)
                      -.+.+.|||||-++       +.+....- .+.+ ++++++|+..-   ..+-..  .+..+...-+ -..|.+.|.||+
T Consensus        44 ~~~~l~D~~G~~~~-------~~~~~~~~-~~ad-~~i~v~D~~~~---~s~~~~~~~~~~~~~~~~~~~~piilv~NK~  111 (159)
T cd04150          44 ISFTVWDVGGQDKI-------RPLWRHYF-QNTQ-GLIFVVDSNDR---ERIGEAREELQRMLNEDELRDAVLLVFANKQ  111 (159)
T ss_pred             EEEEEEECCCCHhH-------HHHHHHHh-cCCC-EEEEEEeCCCH---HHHHHHHHHHHHHHhcHHhcCCCEEEEEECC
Confidence            35799999998442       12222221 2344 58999998642   222221  1211111111 258999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      ||.+.. ..        ..+...+.             +-. +.. .-..+++.|+++++++++++..|-
T Consensus       112 Dl~~~~-~~--------~~i~~~~~-------------~~~-~~~-~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         112 DLPNAM-SA--------AEVTDKLG-------------LHS-LRN-RNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCCCC-CH--------HHHHHHhC-------------ccc-cCC-CCEEEEEeeCCCCCCHHHHHHHHh
Confidence            985321 00        00101000             000 000 124678999999999999998774

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04155 Arl3 Arl3 subfamily

Probab=97.80  E-value=0.00053  Score=55.49  Aligned_cols=114  Identities=18%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .++.++|||||-++       +... ..+  .+.. ++++++|+............+...+......+.|.+.|.||+|+
T Consensus        58 ~~~~~~D~~G~~~~-------~~~~~~~~--~~~~-~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (173)
T cd04155          58 FKLNVWDIGGQRAI-------RPYWRNYF--ENTD-CLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL  127 (173)
T ss_pred             EEEEEEECCCCHHH-------HHHHHHHh--cCCC-EEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence            35788999997431       1111 222  2333 58999998753322221111111112222357999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .... ....        +.+.+.             +.++.  .....++++|+++++++++++..|-+
T Consensus       128 ~~~~-~~~~--------i~~~l~-------------~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         128 ATAA-PAEE--------IAEALN-------------LHDLR--DRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ccCC-CHHH--------HHHHcC-------------CcccC--CCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            6533 1111        111110             00000  11246789999999999999988743

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04116 Rab9 Rab9 subfamily

Probab=97.79  E-value=0.00021  Score=57.88  Aligned_cols=56  Identities=9%  Similarity=0.170  Sum_probs=38.9

Q ss_pred             cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH
Q 026584          132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ  211 (236)
Q Consensus       132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~  211 (236)
                      -++|.+.|.||+|+.++.  .    .  .                   +.+.++..+++...+++.|+++++++.+++..
T Consensus       113 ~~~piilv~nK~Dl~~~~--~----~--~-------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  165 (170)
T cd04116         113 ESFPFVVLGNKNDIPERQ--V----S--T-------------------EEAQAWCRENGDYPYFETSAKDATNVAAAFEE  165 (170)
T ss_pred             CCCcEEEEEECccccccc--c----C--H-------------------HHHHHHHHHCCCCeEEEEECCCCCCHHHHHHH
Confidence            468999999999986322  0    0  0                   00112234566668999999999999999987


Q ss_pred             HHH
Q 026584          212 IDN  214 (236)
Q Consensus       212 Id~  214 (236)
                      +=+
T Consensus       166 ~~~  168 (170)
T cd04116         166 AVR  168 (170)
T ss_pred             HHh
Confidence            754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.78  E-value=0.0004  Score=59.19  Aligned_cols=74  Identities=22%  Similarity=0.343  Sum_probs=45.2

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHH---HhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~---m~~l~lP~InVlsK~  143 (236)
                      ..+.|+|||||..+      ...+.+.++.. .+ ++||++|+......-..++.++..+-.   ...-+.|.+.|.||+
T Consensus        48 ~~~~l~D~pG~~~~------~~~~~~~~~~~-~~-~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~  119 (203)
T cd04105          48 KKFRLVDVPGHPKL------RDKLLETLKNS-AK-GIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ  119 (203)
T ss_pred             ceEEEEECCCCHHH------HHHHHHHHhcc-CC-EEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence            35889999998764      12334445321 23 699999998763222223333332211   122489999999999


Q ss_pred             ccccc
Q 026584          144 DLVTN  148 (236)
Q Consensus       144 DLl~~  148 (236)
                      |+...
T Consensus       120 Dl~~a  124 (203)
T cd04105         120 DLFTA  124 (203)
T ss_pred             hhccc
Confidence            99753

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.78  E-value=0.00047  Score=54.55  Aligned_cols=108  Identities=13%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl  146 (236)
                      +-++|||||-+..       .+.. .++  +.. ++++++|......... +..++..+.... .-+.|.+.|.||+|+.
T Consensus        51 ~~i~Dt~G~~~~~-------~l~~~~~~--~~~-~~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~  119 (162)
T cd04138          51 LDILDTAGQEEYS-------AMRDQYMR--TGE-GFLCVFAINSRKSFED-IHTYREQIKRVKDSDDVPMVLVGNKCDLA  119 (162)
T ss_pred             EEEEECCCCcchH-------HHHHHHHh--cCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            3469999986521       1222 232  233 4666666543221111 112222222111 2378999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ++.....                    ...+       +...++ ..++++|+++++++++++..+=+.
T Consensus       120 ~~~~~~~--------------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         120 ARTVSSR--------------------QGQD-------LAKSYG-IPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             cceecHH--------------------HHHH-------HHHHhC-CeEEEecCCCCCCHHHHHHHHHHH
Confidence            5320000                    0001       112222 478999999999999999887553

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.77  E-value=0.00022  Score=58.32  Aligned_cols=112  Identities=14%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl~  147 (236)
                      +.++|||||-+...       +-....+ +.. +.++++|+..... -..+..+...+.-. ...+.|.|.|.||+|+..
T Consensus        51 ~~l~D~~g~~~~~~-------~~~~~~~-~~~-~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          51 LEIVDTAGQDEYSI-------LPQKYSI-GIH-GYILVYSVTSRKS-FEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT  120 (180)
T ss_pred             EEEEECCChHhhHH-------HHHHHHh-hCC-EEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence            47899999876221       1111211 223 4677777654222 12233332222222 235789999999999854


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .. ...      ...    .        .       .+...++ ..++++|+.+++++..++..+-+.+.
T Consensus       121 ~~-~~~------~~~----~--------~-------~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (180)
T cd04137         121 QR-QVS------TEE----G--------K-------ELAESWG-AAFLESSARENENVEEAFELLIEEIE  163 (180)
T ss_pred             cC-ccC------HHH----H--------H-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22 110      000    0        0       1112233 57899999999999999998876544

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=97.77  E-value=0.00049  Score=55.78  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.+.|||||.....      ..-..+ + +.. ++++++|+.   ++.+|  +..++..+.....-+.|.+.|.||+|+
T Consensus        53 ~l~l~D~~g~~~~~~------~~~~~~-~-~ad-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl  120 (167)
T cd01867          53 KLQIWDTAGQERFRT------ITTAYY-R-GAM-GIILVYDIT---DEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM  120 (167)
T ss_pred             EEEEEeCCchHHHHH------HHHHHh-C-CCC-EEEEEEECc---CHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            357889999754211      111223 2 333 688899964   44443  333333333333347899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. +.      ..+.            ..       ++...++ ..++++|+++++++.+++..+-+.+
T Consensus       121 ~~~~-~~------~~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         121 EEKR-VV------SKEE------------GE-------ALADEYG-IKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             cccc-CC------CHHH------------HH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7432 11      0000            00       1122333 3789999999999999999887653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.76  E-value=0.00037  Score=57.21  Aligned_cols=111  Identities=13%  Similarity=0.028  Sum_probs=60.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHH-HHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLS-AMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls-~m~~l~lP~InVlsK~  143 (236)
                      -.+.++|||||-++.   ...   -..++  +.. ++++++|+..   +..+-..  .+..+. ..-.-+.|.+.|.||+
T Consensus        59 ~~~~l~D~~G~~~~~---~~~---~~~~~--~~d-~vi~V~D~s~---~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~  126 (174)
T cd04153          59 IRFLMWDIGGQESLR---SSW---NTYYT--NTD-AVILVIDSTD---RERLPLTKEELYKMLAHEDLRKAVLLVLANKQ  126 (174)
T ss_pred             eEEEEEECCCCHHHH---HHH---HHHhh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHhchhhcCCCEEEEEECC
Confidence            358999999985421   111   11232  344 5899999754   3333211  121111 1011368999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      |+....         +.+.+...+..              .-+.+. -..++|+|+.++++++.++..|-
T Consensus       127 Dl~~~~---------~~~~i~~~l~~--------------~~~~~~-~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         127 DLKGAM---------TPAEISESLGL--------------TSIRDH-TWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             CCCCCC---------CHHHHHHHhCc--------------ccccCC-ceEEEecccCCCCCHHHHHHHHh
Confidence            985421         11111111100              001111 14789999999999999998874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.75  E-value=0.00021  Score=65.35  Aligned_cols=162  Identities=15%  Similarity=0.232  Sum_probs=98.0

Q ss_pred             ChHHHHHHHHHHH-HhhHHHHHHHhccc----------CCCCEEEEeCCCceeeeeccchHHHHHHHHh----h-CCCce
Q 026584           38 PNGGLIYCMEHLE-DNLDDWLAEELDNY----------LDDDYLVFDCPGQIELFTHVPVLRNFVDHLK----S-RNFNV  101 (236)
Q Consensus        38 PNGalv~~me~l~-~n~~~wl~~~i~~~----------~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~----~-~~~~~  101 (236)
                      ||.|..+--+.+. .++ .-...|....          .+.+-+++||||-|+--.++..... ...++    + .+.. 
T Consensus        81 PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~-~s~lq~~~~a~q~AD-  157 (379)
T KOG1423|consen   81 PNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM-MSVLQNPRDAAQNAD-  157 (379)
T ss_pred             CCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH-HHhhhCHHHHHhhCC-
Confidence            9999998888776 344 4455555432          1346799999998886665554322 22332    2 2344 


Q ss_pred             EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhh---hhccccHHHHHHHhhhcchhHHHHH
Q 026584          102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE---DYLNPESQFLLSELNQHMAPQFAKL  178 (236)
Q Consensus       102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~---~~l~~~~~~l~~~l~~~~~~~~~~l  178 (236)
                      |+|.++|+..   +.+.++--++-.+--++ .+|-|.|+||+|.++.+..+.   ..++++              ...++
T Consensus       158 ~vvVv~Das~---tr~~l~p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g--------------~l~~~  219 (379)
T KOG1423|consen  158 CVVVVVDASA---TRTPLHPRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNG--------------ELAKL  219 (379)
T ss_pred             EEEEEEeccC---CcCccChHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhcccc--------------ccchh
Confidence            5777899875   55555554443333333 899999999999998763332   222221              00001


Q ss_pred             HHHHHHHhhc------------c-CCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          179 NKSLIELVDE------------Y-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       179 ~~~l~~li~d------------~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      ..++.+-..+            . .+-..+++|+.++++|++|-+.+=.-.+.|+
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            1111111111            1 1346999999999999999988766666554

>cd04113 Rab4 Rab4 subfamily

Probab=97.75  E-value=0.00045  Score=55.26  Aligned_cols=109  Identities=13%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      .-++|||||-+...       +....- .+.. ++++++|+..-..... +..++..+.....-+.|.+.|.||+|+.+.
T Consensus        51 l~l~D~~G~~~~~~-------~~~~~~-~~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  120 (161)
T cd04113          51 LQIWDTAGQERFRS-------VTRSYY-RGAA-GALLVYDITNRTSFEA-LPTWLSDARALASPNIVVILVGNKSDLADQ  120 (161)
T ss_pred             EEEEECcchHHHHH-------hHHHHh-cCCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence            46899999854221       111221 2333 6888899755322222 233333333344458899999999999642


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      . ..      +...                   ...+...++ ..++.+|+++++++.+++..+-+
T Consensus       121 ~-~~------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         121 R-EV------TFLE-------------------ASRFAQENG-LLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             c-cC------CHHH-------------------HHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence            2 10      0000                   011222344 78999999999999999988754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.75  E-value=0.00042  Score=55.17  Aligned_cols=109  Identities=13%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-++|||||-+..       .+....- .+.. ++++++|+..   +..+  +..++-.+.....-+.|.+.|.||+|+.
T Consensus        51 ~~l~D~~G~~~~~-------~~~~~~~-~~~d-~~ilv~d~~~---~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~  118 (164)
T smart00175       51 LQIWDTAGQERFR-------SITSSYY-RGAV-GALLVYDITN---RESFENLKNWLKELREYADPNVVIMLVGNKSDLE  118 (164)
T ss_pred             EEEEECCChHHHH-------HHHHHHh-CCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence            4688999974322       1222221 2344 5888999754   4433  2223333333333579999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. +.      +.+            ...       ++...++ ..++++|+++++++++++..|-+.+
T Consensus       119 ~~~-~~------~~~------------~~~-------~~~~~~~-~~~~e~Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      119 DQR-QV------SRE------------EAE-------AFAEEHG-LPFFETSAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             ccc-CC------CHH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            422 11      000            011       1122344 4699999999999999999887654

Rab GTPases are implicated in vesicle trafficking.

>cd04134 Rho3 Rho3 subfamily

Probab=97.74  E-value=0.00017  Score=60.24  Aligned_cols=123  Identities=11%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH---HHHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is---~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.-.    ++.    +.-.+.. +++++.|   ++++.+|-.   .++-.+. ...-+.|.+.|.||+|
T Consensus        49 ~l~i~Dt~G~~~~~~----l~~----~~~~~a~-~~ilv~d---v~~~~sf~~~~~~~~~~i~-~~~~~~piilvgNK~D  115 (189)
T cd04134          49 ELSLWDTAGQEEFDR----LRS----LSYADTD-VIMLCFS---VDSPDSLENVESKWLGEIR-EHCPGVKLVLVALKCD  115 (189)
T ss_pred             EEEEEECCCChhccc----ccc----ccccCCC-EEEEEEE---CCCHHHHHHHHHHHHHHHH-HhCCCCCEEEEEEChh
Confidence            467899999965311    111    1111222 3555555   344444432   2322222 2224899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |.... .......        ......- ..    +...++...++...|+++|+++++++++++..+-+..-
T Consensus       116 l~~~~-~~~~~~~--------~~~~~~v-~~----~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         116 LREAR-NERDDLQ--------RYGKHTI-SY----EEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             hccCh-hhHHHHh--------hccCCCC-CH----HHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence            97543 1111100        0000000 00    01112344566678999999999999999999887543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=97.73  E-value=0.00063  Score=55.49  Aligned_cols=118  Identities=15%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+...   .   .-..+  .+.. ++++++|+..   +..+-  ..++..+..... -+.|.+.|.||+|
T Consensus        44 ~i~l~Dt~G~~~~~~---~---~~~~~--~~ad-~ii~V~D~s~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  111 (169)
T cd04158          44 KFTIWDVGGKHKLRP---L---WKHYY--LNTQ-AVVFVVDSSH---RDRVSEAHSELAKLLTEKELRDALLLIFANKQD  111 (169)
T ss_pred             EEEEEECCCChhcch---H---HHHHh--ccCC-EEEEEEeCCc---HHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence            568999999865321   1   11122  2334 6899999754   33332  222222221112 2489999999999


Q ss_pred             cccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584          145 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA  222 (236)
Q Consensus       145 Ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~  222 (236)
                      +....  .++..++.                    +.    ++ .....+.|++.|++++.++.+++..+-+.+..++-+
T Consensus       112 l~~~~~~~~~~~~~~--------------------~~----~~-~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~  166 (169)
T cd04158         112 VAGALSVEEMTELLS--------------------LH----KL-CCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL  166 (169)
T ss_pred             cccCCCHHHHHHHhC--------------------Cc----cc-cCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence            85321  00111000                    00    00 011135788999999999999999998766655443

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04149 Arf6 Arf6 subfamily

Probab=97.73  E-value=0.00049  Score=56.46  Aligned_cols=106  Identities=15%  Similarity=0.115  Sum_probs=59.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~  143 (236)
                      .+.+.|||||-.+       +.+.. .+  .+.+ ++|+++|+..   +..|-..  .+..+..-. .-+.|.+.|.||+
T Consensus        54 ~~~l~Dt~G~~~~-------~~~~~~~~--~~a~-~ii~v~D~t~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~  120 (168)
T cd04149          54 KFNVWDVGGQDKI-------RPLWRHYY--TGTQ-GLIFVVDSAD---RDRIDEARQELHRIINDREMRDALLLVFANKQ  120 (168)
T ss_pred             EEEEEECCCCHHH-------HHHHHHHh--ccCC-EEEEEEeCCc---hhhHHHHHHHHHHHhcCHhhcCCcEEEEEECc
Confidence            5789999998532       11111 22  2344 6899999754   3333222  111111111 1368999999999


Q ss_pred             ccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CCeeEEEeeccCcccHHHHHHHHH
Q 026584          144 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       144 DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      |+....  .++..++.                           +-... ....++|.|+.+++++.+++..|-
T Consensus       121 Dl~~~~~~~~i~~~~~---------------------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         121 DLPDAMKPHEIQEKLG---------------------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CCccCCCHHHHHHHcC---------------------------CCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence            985321  01111111                           00001 125789999999999999998873

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.73  E-value=0.00051  Score=54.69  Aligned_cols=111  Identities=8%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-----cCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-----LELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-----l~lP~InVlsK  142 (236)
                      .+-++|||||-+ |.      .+....- .+.. ++++++|+.....-.. +..++-.+.-...     .+.|.+.|.||
T Consensus        50 ~l~i~Dt~G~~~-~~------~~~~~~~-~~~d-~~ilv~D~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK  119 (168)
T cd04119          50 RVNFFDLSGHPE-YL------EVRNEFY-KDTQ-GVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANK  119 (168)
T ss_pred             EEEEEECCccHH-HH------HHHHHHh-ccCC-EEEEEEECCCHHHHHh-HHHHHHHHHHhccccccCCCceEEEEEEc
Confidence            356999999843 11      1112111 2333 6888999654221111 1222222222221     46899999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +|+.+.. ..    .  .+            ...       ....+++ ..++++|++++++++.++..|-+.
T Consensus       120 ~Dl~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  165 (168)
T cd04119         120 IDLTKHR-AV----S--ED------------EGR-------LWAESKG-FKYFETSACTGEGVNEMFQTLFSS  165 (168)
T ss_pred             hhccccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence            9996322 00    0  00            000       1122444 678999999999999999987654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04114 Rab30 Rab30 subfamily

Probab=97.72  E-value=0.00053  Score=55.17  Aligned_cols=107  Identities=9%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +.+.|||||-+.-   ..   .-..++  +.. ++++++|+.   ++..+  +..++..+.....-++|.+.|.||+|+.
T Consensus        58 ~~~~D~~g~~~~~---~~---~~~~~~--~~d-~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~  125 (169)
T cd04114          58 LQIWDTAGQERFR---SI---TQSYYR--SAN-ALILTYDIT---CEESFRCLPEWLREIEQYANNKVITILVGNKIDLA  125 (169)
T ss_pred             EEEEECCCcHHHH---HH---HHHHhc--CCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            5778999975421   11   112332  233 588889975   33333  3444444444445589999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ... ++..                      .+.+.+.+.   .. ..+++.|+++++++..++..|-+
T Consensus       126 ~~~-~i~~----------------------~~~~~~~~~---~~-~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114         126 ERR-EVSQ----------------------QRAEEFSDA---QD-MYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             ccc-ccCH----------------------HHHHHHHHH---cC-CeEEEeeCCCCCCHHHHHHHHHH
Confidence            433 1110                      000111111   12 67999999999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.72  E-value=0.00031  Score=69.41  Aligned_cols=128  Identities=20%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +.++|||||-. |+.   ++  .... + ... ++++++|+..--.+..+-+.     ..+...+.|.+.|+||+|+...
T Consensus        73 i~~iDTPG~e~-f~~---~~--~~~~-~-~aD-~~IlVvDa~~g~~~qt~e~i-----~~~~~~~vpiIvviNK~D~~~~  138 (586)
T PRK04004         73 LLFIDTPGHEA-FTN---LR--KRGG-A-LAD-IAILVVDINEGFQPQTIEAI-----NILKRRKTPFVVAANKIDRIPG  138 (586)
T ss_pred             EEEEECCChHH-HHH---HH--HHhH-h-hCC-EEEEEEECCCCCCHhHHHHH-----HHHHHcCCCEEEEEECcCCchh
Confidence            78999999854 321   11  1122 1 223 58889998754445555433     2334569999999999998632


Q ss_pred             hhH-h-hhhccc---cHHHHHHHhhhcchhHHHHHHHHH---------HHHhhccCC-eeEEEeeccCcccHHHHHHHHH
Q 026584          149 KKE-I-EDYLNP---ESQFLLSELNQHMAPQFAKLNKSL---------IELVDEYSM-VSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       149 ~~~-l-~~~l~~---~~~~l~~~l~~~~~~~~~~l~~~l---------~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id  213 (236)
                      ... . ..|.+.   ........    +.....++...+         ..-+.+++. +.|+|+|+.+++++.+|+..+-
T Consensus       139 ~~~~~~~~~~e~~~~~~~~v~~~----f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~  214 (586)
T PRK04004        139 WKSTEDAPFLESIEKQSQRVQQE----LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA  214 (586)
T ss_pred             hhhhcCchHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence            100 0 001110   00000000    000111111111         111234444 8999999999999999998875


Q ss_pred             H
Q 026584          214 N  214 (236)
Q Consensus       214 ~  214 (236)
                      .
T Consensus       215 ~  215 (586)
T PRK04004        215 G  215 (586)
T ss_pred             H
Confidence            4

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.71  E-value=0.00033  Score=66.29  Aligned_cols=113  Identities=19%  Similarity=0.326  Sum_probs=64.0

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc---cchhhHHHHHHHHHHHHhhcCC-CEEEEecc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI---TDVTKFISGCMASLSAMVQLEL-PHVNILSK  142 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~---~dp~~~is~~l~sls~m~~l~l-P~InVlsK  142 (236)
                      ..+.|+|||||-+      ..+.....+.  +.. ++++++|+..-   ..+...- .    +...-.++. |.|.|+||
T Consensus        85 ~~i~iiDtpGh~~------f~~~~~~~~~--~aD-~~ilVvDa~~~~~~~~~~t~~-~----~~~~~~~~~~~iIVviNK  150 (426)
T TIGR00483        85 YEVTIVDCPGHRD------FIKNMITGAS--QAD-AAVLVVAVGDGEFEVQPQTRE-H----AFLARTLGINQLIVAINK  150 (426)
T ss_pred             eEEEEEECCCHHH------HHHHHHhhhh--hCC-EEEEEEECCCCCcccCCchHH-H----HHHHHHcCCCeEEEEEEC
Confidence            3578999999754      2233333332  333 68889998643   2222111 0    111122455 46678999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH-----------
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY-----------  207 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~-----------  207 (236)
                      +|+.....+                      .+....+.+.+++..++.    +.|+|+|+.+++++.+           
T Consensus       151 ~Dl~~~~~~----------------------~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~  208 (426)
T TIGR00483       151 MDSVNYDEE----------------------EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGK  208 (426)
T ss_pred             hhccCccHH----------------------HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccch
Confidence            999742200                      111112222233444442    7899999999999985           


Q ss_pred             -HHHHHHHh
Q 026584          208 -VLSQIDNC  215 (236)
Q Consensus       208 -L~~~Id~~  215 (236)
                       |+.++++.
T Consensus       209 ~l~~~l~~~  217 (426)
T TIGR00483       209 TLLEALDAL  217 (426)
T ss_pred             HHHHHHhcC
Confidence             77888764

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.70  E-value=0.0013  Score=58.93  Aligned_cols=66  Identities=17%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .++.++||||+..      ........++..+   ++++++|+..--.+.. .+      +....+.++|++.|+||+|+
T Consensus        64 ~~i~liDTPG~~d------f~~~~~~~l~~aD---~ailVVDa~~g~~~~t~~~------~~~~~~~~~p~ivviNK~D~  128 (270)
T cd01886          64 HRINIIDTPGHVD------FTIEVERSLRVLD---GAVAVFDAVAGVEPQTETV------WRQADRYNVPRIAFVNKMDR  128 (270)
T ss_pred             EEEEEEECCCcHH------HHHHHHHHHHHcC---EEEEEEECCCCCCHHHHHH------HHHHHHcCCCEEEEEECCCC
Confidence            4689999999654      2233444554333   6889999965333322 22      22234578999999999999


Q ss_pred             cc
Q 026584          146 VT  147 (236)
Q Consensus       146 l~  147 (236)
                      ..
T Consensus       129 ~~  130 (270)
T cd01886         129 TG  130 (270)
T ss_pred             CC
Confidence            75

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04135 Tc10 TC10 subfamily

Probab=97.70  E-value=0.00035  Score=56.62  Aligned_cols=118  Identities=12%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      -++|||||-+....+.        ..-.+.. ++++++|..   ++.+|-..   ++-.+. ...-+.|.+.|.||+|+.
T Consensus        51 ~i~Dt~G~~~~~~~~~--------~~~~~~~-~~ilv~~~~---~~~s~~~~~~~~~~~l~-~~~~~~piivv~nK~Dl~  117 (174)
T cd04135          51 GLYDTAGQEDYDRLRP--------LSYPMTD-VFLICFSVV---NPASFQNVKEEWVPELK-EYAPNVPYLLVGTQIDLR  117 (174)
T ss_pred             EEEeCCCccccccccc--------ccCCCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEeEchhhh
Confidence            4799999876322211        1112233 567777754   44444322   222222 224689999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ...........         ... ...      ......+...++...|+.+|+.++.++++++..+-++
T Consensus       118 ~~~~~~~~~~~---------~~~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         118 DDPKTLARLND---------MKEKPVT------VEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             cChhhHHHHhh---------ccCCCCC------HHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence            54311111100         000 000      0111233445666789999999999999999887554

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.69  E-value=0.00031  Score=69.49  Aligned_cols=111  Identities=14%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||..+...    +  .+..  .... ++++++|+..-..|...-+     +......++|.|.|+||+|+..
T Consensus       136 ~i~~iDTPGhe~F~~~----r--~rga--~~aD-iaILVVda~dgv~~qT~e~-----i~~~~~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       136 MITFLDTPGHEAFTSM----R--ARGA--KVTD-IVVLVVAADDGVMPQTIEA-----ISHAKAANVPIIVAINKIDKPE  201 (587)
T ss_pred             EEEEEECCCCcchhhH----H--Hhhh--ccCC-EEEEEEECCCCCCHhHHHH-----HHHHHHcCCCEEEEEECccccc
Confidence            6899999998653321    1  1112  1222 4778888765444444322     2333457999999999999853


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ..          .+.+...+..     ++       -..+.|+. ..|+|+|+.+++++.+|+..|-.
T Consensus       202 ~~----------~e~v~~~L~~-----~g-------~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       202 AN----------PDRVKQELSE-----YG-------LVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CC----------HHHHHHHHHH-----hh-------hhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            21          1111111110     00       01234443 68999999999999999988853

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.69  E-value=0.0018  Score=57.34  Aligned_cols=42  Identities=12%  Similarity=0.119  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       176 ~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ..+.+.+.+.+..=.++..++.|+.+..++..|+..+.+.++
T Consensus       225 ~~l~~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p  266 (268)
T cd04170         225 EELHAGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHLLP  266 (268)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence            356667777777777789999999999999999999987654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04122 Rab14 Rab14 subfamily

Probab=97.68  E-value=0.00082  Score=54.31  Aligned_cols=108  Identities=13%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ++-|+|||||.+..       .+....- .+.. ++++++|+.   ++..|  +..++-.......-+.|.+.|.||+|+
T Consensus        52 ~l~i~Dt~G~~~~~-------~~~~~~~-~~~~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl  119 (166)
T cd04122          52 KLQIWDTAGQERFR-------AVTRSYY-RGAA-GALMVYDIT---RRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL  119 (166)
T ss_pred             EEEEEECCCcHHHH-------HHHHHHh-cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            35799999986422       2222221 2344 688889964   44444  333332222222346899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .+.. ..    .  .+            ...       ++...++ ..|+++|+.+++++.+++..+-+
T Consensus       120 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122         120 EAQR-DV----T--YE------------EAK-------QFADENG-LLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             cccc-Cc----C--HH------------HHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence            6432 11    0  00            001       1112233 47999999999999998866543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04123 Rab21 Rab21 subfamily

Probab=97.68  E-value=0.00034  Score=55.33  Aligned_cols=109  Identities=16%  Similarity=0.207  Sum_probs=62.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||.+....   .+.   .+  .+.. ++++++|+.   ++..+-  ..++..+.....-++|.+.|+||+|+
T Consensus        50 ~~~~~D~~g~~~~~~~---~~~---~~--~~~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~  117 (162)
T cd04123          50 DLAIWDTAGQERYHAL---GPI---YY--RDAD-GAILVYDIT---DADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL  117 (162)
T ss_pred             EEEEEECCchHHHHHh---hHH---Hh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            3678999998653221   111   12  2334 578888963   333322  22222332233337999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... .+..      +            ...       ++...++ ..++++|+.+++++..++..+-+.
T Consensus       118 ~~~~-~~~~------~------------~~~-------~~~~~~~-~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123         118 ERQR-VVSK------S------------EAE-------EYAKSVG-AKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             cccc-CCCH------H------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            7432 1100      0            000       1111222 467899999999999999988654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.68  E-value=0.00039  Score=65.53  Aligned_cols=136  Identities=15%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeec--cchHHHHH-HHHhhCCCceEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTH--VPVLRNFV-DHLKSRNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~--~~~~~~iv-~~L~~~~~~~~~V  104 (236)
                      ||.|..+-++.|...-..+..+...          ......+.++|||||.+ ...  ...++... ..+.  +.. +++
T Consensus        10 ~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~--~ad-~il   85 (435)
T PRK00093         10 PNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP-DDDGFEKQIREQAELAIE--EAD-VIL   85 (435)
T ss_pred             CCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC-cchhHHHHHHHHHHHHHH--hCC-EEE
Confidence            6777777777776432011111111          11124579999999876 221  11122211 2222  333 689


Q ss_pred             EeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          105 YLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       105 ~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      +++|+..-..+ ...+..      .+-+.+.|.|.|+||+|+.+.....                       .       
T Consensus        86 ~vvd~~~~~~~~~~~~~~------~l~~~~~piilv~NK~D~~~~~~~~-----------------------~-------  129 (435)
T PRK00093         86 FVVDGRAGLTPADEEIAK------ILRKSNKPVILVVNKVDGPDEEADA-----------------------Y-------  129 (435)
T ss_pred             EEEECCCCCCHHHHHHHH------HHHHcCCcEEEEEECccCccchhhH-----------------------H-------
Confidence            99998653222 222322      2334589999999999964321000                       0       


Q ss_pred             HHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ++ ..+++-.++|+|+.++.++..++..|-+
T Consensus       130 ~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        130 EF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             HH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            00 1234446899999999999999998876

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.67  E-value=0.00035  Score=57.80  Aligned_cols=120  Identities=11%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..|+|||||-+....    +..  .+  .+.. ++++++|..   ++.+|-..   ++-.+. ...-+.|.|.|.||+|+
T Consensus        51 l~i~Dt~G~~~~~~~----~~~--~~--~~a~-~~ilv~d~~---~~~s~~~~~~~w~~~i~-~~~~~~piilvgnK~Dl  117 (175)
T cd01874          51 LGLFDTAGQEDYDRL----RPL--SY--PQTD-VFLVCFSVV---SPSSFENVKEKWVPEIT-HHCPKTPFLLVGTQIDL  117 (175)
T ss_pred             EEEEECCCccchhhh----hhh--hc--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEECHhh
Confidence            468999999653221    111  12  2333 678888864   44444332   221121 12247899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... ++..-+.           ....+..  -.+...++..+++...|++.|+++++++++++..+-++
T Consensus       118 ~~~~-~~~~~l~-----------~~~~~~v--~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         118 RDDP-STIEKLA-----------KNKQKPI--TPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             hhCh-hhHHHhh-----------hccCCCc--CHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            6543 2211111           0000000  00111233345667899999999999999999887653

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=97.67  E-value=0.00095  Score=53.73  Aligned_cols=110  Identities=13%  Similarity=0.286  Sum_probs=65.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-++|||||...       ..+....-+ +.. ++++++|+.   ++..|  +..++..+..+..-+.|.+.|.||+|+
T Consensus        52 ~~~i~D~~G~~~~-------~~~~~~~~~-~~~-~ii~v~d~~---~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl  119 (166)
T cd01869          52 KLQIWDTAGQERF-------RTITSSYYR-GAH-GIIIVYDVT---DQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  119 (166)
T ss_pred             EEEEEECCCcHhH-------HHHHHHHhC-cCC-EEEEEEECc---CHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence            4578899997532       112222212 333 688899975   44444  333444333333346899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... .+.      ..            .-    ..+   ...++ +.++++|+++++++.+++..|-+.+
T Consensus       120 ~~~~-~~~------~~------------~~----~~~---~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         120 TDKR-VVD------YS------------EA----QEF---ADELG-IPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             cccc-CCC------HH------------HH----HHH---HHHcC-CeEEEEECCCCcCHHHHHHHHHHHH
Confidence            6433 110      00            00    011   12233 5799999999999999999886644

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.66  E-value=0.00082  Score=66.59  Aligned_cols=110  Identities=15%  Similarity=0.241  Sum_probs=65.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||..+ .  .   .....++.  .. ++++++|+..-..+...- .+..    ..+.++|.|.|+||+|+..
T Consensus        71 ~l~liDTPG~~dF-~--~---~v~~~l~~--aD-~aILVvDat~g~~~qt~~-~~~~----~~~~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        71 VLNLIDTPGHVDF-S--Y---EVSRSLAA--CE-GALLLVDAAQGIEAQTLA-NVYL----ALENDLEIIPVINKIDLPS  136 (595)
T ss_pred             EEEEEECCCcHHH-H--H---HHHHHHHh--CC-EEEEEecCCCCCCHhHHH-HHHH----HHHcCCCEEEEEECcCCCc
Confidence            3589999999762 1  1   22233433  33 588999986533333221 1211    1246899999999999853


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ..  ..        ....++               .+.+ .+....++++|++++.++..|+..|.+.+.
T Consensus       137 ~~--~~--------~~~~el---------------~~~l-g~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       137 AD--PE--------RVKKEI---------------EEVI-GLDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             cC--HH--------HHHHHH---------------HHHh-CCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            21  00        000111               1111 111135899999999999999999987654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.65  E-value=0.0022  Score=56.21  Aligned_cols=134  Identities=15%  Similarity=0.237  Sum_probs=75.6

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++|||||.++.      ......++..  . ++++++|+..-..+.   ..-+  .....+.++|++.|+||+|+.
T Consensus        64 ~~i~liDTPG~~~f~------~~~~~~l~~a--D-~~IlVvd~~~g~~~~---~~~~--~~~~~~~~~P~iivvNK~D~~  129 (237)
T cd04168          64 TKVNLIDTPGHMDFI------AEVERSLSVL--D-GAILVISAVEGVQAQ---TRIL--WRLLRKLNIPTIIFVNKIDRA  129 (237)
T ss_pred             EEEEEEeCCCccchH------HHHHHHHHHh--C-eEEEEEeCCCCCCHH---HHHH--HHHHHHcCCCEEEEEECcccc
Confidence            468999999997632      2233344322  2 578889986532211   1111  222345799999999999997


Q ss_pred             cch-h----Hhhhhcc-------------------ccHHHHHHHhhhc-----------chhHHHHHHHHHHHHhhccCC
Q 026584          147 TNK-K----EIEDYLN-------------------PESQFLLSELNQH-----------MAPQFAKLNKSLIELVDEYSM  191 (236)
Q Consensus       147 ~~~-~----~l~~~l~-------------------~~~~~l~~~l~~~-----------~~~~~~~l~~~l~~li~d~~l  191 (236)
                      +.. .    ++..-+.                   +-++.|++.+.+.           ..-...++...+.+.+..-  
T Consensus       130 ~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~--  207 (237)
T cd04168         130 GADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKR--  207 (237)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC--
Confidence            521 1    1111110                   0123333333221           1112345566665555543  


Q ss_pred             eeEEEe---eccCcccHHHHHHHHHHhhc
Q 026584          192 VSFMPL---DLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       192 v~f~pl---s~~d~~~i~~L~~~Id~~~~  217 (236)
                       +++|+   |+....|+..|+..|.+.++
T Consensus       208 -~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         208 -KVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             -CeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence             55565   99999999999999987653

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04142 RRP22 RRP22 subfamily

Probab=97.65  E-value=0.00057  Score=58.03  Aligned_cols=121  Identities=13%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             EEEEeCCCceeeeeccc--h-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh---hcCCCEEEEe
Q 026584           69 YLVFDCPGQIELFTHVP--V-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV---QLELPHVNIL  140 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~--~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~---~l~lP~InVl  140 (236)
                      +.|+||||+-+ |....  . .......+  .+.. ++++++|+.   ++.+|-..  +.-.+....   .-+.|.|.|.
T Consensus        51 l~i~Dt~G~~~-~~~~~~~e~~~~~~~~~--~~ad-~iilv~D~~---~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg  123 (198)
T cd04142          51 LHILDVPNMQR-YPGTAGQEWMDPRFRGL--RNSR-AFILVYDIC---SPDSFHYVKLLRQQILETRPAGNKEPPIVVVG  123 (198)
T ss_pred             EEEEeCCCccc-CCccchhHHHHHHHhhh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            56999999754 32111  1 11111223  2333 689999964   56655432  211122111   2468999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH-hhccc
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN-CIQWG  219 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~-~~~y~  219 (236)
                      ||+|+.... .    ..  .+.            ..+       +...-.-..|+++|++++.+++.++..+-+ +++-|
T Consensus       124 NK~Dl~~~~-~----~~--~~~------------~~~-------~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         124 NKRDQQRHR-F----AP--RHV------------LSV-------LVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             ECccccccc-c----cc--HHH------------HHH-------HHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            999995432 0    00  000            001       111111268999999999999999887765 55555


Q ss_pred             ccC
Q 026584          220 EDA  222 (236)
Q Consensus       220 ed~  222 (236)
                      ...
T Consensus       178 ~~~  180 (198)
T cd04142         178 RST  180 (198)
T ss_pred             CCc
Confidence            443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04176 Rap2 Rap2 subgroup

Probab=97.64  E-value=0.00061  Score=54.57  Aligned_cols=109  Identities=15%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      +-|.|||||-++..    ++.  ..++  +.. ++++++|+.   ++..|-..  ++..+.-.. ..+.|.+.|.||+|+
T Consensus        51 l~i~Dt~G~~~~~~----~~~--~~~~--~ad-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl  118 (163)
T cd04176          51 LEILDTAGTEQFAS----MRD--LYIK--NGQ-GFIVVYSLV---NQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL  118 (163)
T ss_pred             EEEEECCCcccccc----hHH--HHHh--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            44799999854321    111  1222  233 577778864   44443322  222222111 257999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ....                  ..    ...+   ...++ ..++|+|++++.++.+++..+-+.+
T Consensus       119 ~~~~-~~~~------------------~~----~~~~---~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         119 ESER-EVSS------------------AE----GRAL---AEEWG-CPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             hhcC-ccCH------------------HH----HHHH---HHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence            5422 1000                  00    0111   12344 4789999999999999998886543

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01865 Rab3 Rab3 subfamily

Probab=97.64  E-value=0.00092  Score=54.06  Aligned_cols=109  Identities=12%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-...       .+.... -.+.. ++++++|+.   ++..|-  ..++-.+.....-+.|.+.|.||+||
T Consensus        51 ~~~l~Dt~g~~~~~-------~~~~~~-~~~~~-~~l~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl  118 (165)
T cd01865          51 KLQIWDTAGQERYR-------TITTAY-YRGAM-GFILMYDIT---NEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM  118 (165)
T ss_pred             EEEEEECCChHHHH-------HHHHHH-ccCCc-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCCEEEEEECccc
Confidence            46789999976421       111222 12333 688889975   344433  33332222222236899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.. ...      .+            ...       ++.+.++ ..++++|++++.++.+++..+-+.
T Consensus       119 ~~~~-~~~------~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865         119 EDER-VVS------SE------------RGR-------QLADQLG-FEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             Cccc-ccC------HH------------HHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence            6533 110      00            001       1112223 379999999999999999988654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01868 Rab11_like Rab11-like

Probab=97.62  E-value=0.0009  Score=53.71  Aligned_cols=109  Identities=15%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-++|||||.+.       +.+....-+ +. .++++++|+.   ++..|-.  .++..+......+.|.+.|.||+|+
T Consensus        53 ~~~l~D~~g~~~~-------~~~~~~~~~-~~-~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl  120 (165)
T cd01868          53 KAQIWDTAGQERY-------RAITSAYYR-GA-VGALLVYDIT---KKQTFENVERWLKELRDHADSNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEEEeCCChHHH-------HHHHHHHHC-CC-CEEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            3578999998541       111121112 22 3578889976   4444432  2222222222236899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... ..    .  .            ....++    ++   ..+ +.++++|+.++++++.++..+-+.
T Consensus       121 ~~~~-~~----~--~------------~~~~~~----~~---~~~-~~~~~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         121 RHLR-AV----P--T------------EEAKAF----AE---KNG-LSFIETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             cccc-cC----C--H------------HHHHHH----HH---HcC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence            6432 11    0  0            001111    11   122 579999999999999999988654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04140 ARHI_like ARHI subfamily

Probab=97.60  E-value=0.0011  Score=53.58  Aligned_cols=107  Identities=9%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhh---cCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~---l~lP~InVlsK  142 (236)
                      .+.++|||||-+...    +++  ..+ + +.. ++++++|...   +..|  +..++-.+.....   -++|.+.|.||
T Consensus        50 ~l~i~Dt~G~~~~~~----~~~--~~~-~-~~~-~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  117 (165)
T cd04140          50 TLQITDTTGSHQFPA----MQR--LSI-S-KGH-AFILVYSVTS---KQSLEELKPIYELICEIKGNNIEKIPIMLVGNK  117 (165)
T ss_pred             EEEEEECCCCCcchH----HHH--HHh-h-cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence            356999999965321    111  112 1 233 5677788543   3333  2222222221111   46899999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      +|+.+.. ++..          +     .   -    ..   ....++ ..|+++|+++++++.+++..|-
T Consensus       118 ~Dl~~~~-~v~~----------~-----~---~----~~---~~~~~~-~~~~e~SA~~g~~v~~~f~~l~  161 (165)
T cd04140         118 CDESHKR-EVSS----------N-----E---G----AA---CATEWN-CAFMETSAKTNHNVQELFQELL  161 (165)
T ss_pred             ccccccC-eecH----------H-----H---H----HH---HHHHhC-CcEEEeecCCCCCHHHHHHHHH
Confidence            9996422 1100          0     0   0    00   112333 5799999999999999998874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PTZ00099 rab6; Provisional

Probab=97.60  E-value=0.00066  Score=56.69  Aligned_cols=112  Identities=13%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ++.|+|||||-.....   ..   ..+  .+.. ++++++|+..   +..|=  ..++..+.....-++|.|.|.||+||
T Consensus        30 ~l~iwDt~G~e~~~~~---~~---~~~--~~ad-~~ilv~D~t~---~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL   97 (176)
T PTZ00099         30 RLQLWDTAGQERFRSL---IP---SYI--RDSA-AAIVVYDITN---RQSFENTTKWIQDILNERGKDVIIALVGNKTDL   97 (176)
T ss_pred             EEEEEECCChHHhhhc---cH---HHh--CCCc-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence            5789999999542221   11   112  2344 6888899654   33221  12222221111236888999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .... ..    .  .+                   ........++. .|++.|+++++++..++..|-+.+.-
T Consensus        98 ~~~~-~v----~--~~-------------------e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         98 GDLR-KV----T--YE-------------------EGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cccc-CC----C--HH-------------------HHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5422 11    0  00                   00122334443 68999999999999999999877643

>cd01882 BMS1 Bms1

Probab=97.60  E-value=0.0016  Score=56.52  Aligned_cols=113  Identities=19%  Similarity=0.314  Sum_probs=63.0

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~D  144 (236)
                      ...+.++||||.+         ..+++.++..  . ++++++|+..-..+...-     .+......+.|.+. |+||+|
T Consensus        82 ~~~i~~vDtPg~~---------~~~l~~ak~a--D-vVllviDa~~~~~~~~~~-----i~~~l~~~g~p~vi~VvnK~D  144 (225)
T cd01882          82 KRRLTFIECPNDI---------NAMIDIAKVA--D-LVLLLIDASFGFEMETFE-----FLNILQVHGFPRVMGVLTHLD  144 (225)
T ss_pred             CceEEEEeCCchH---------HHHHHHHHhc--C-EEEEEEecCcCCCHHHHH-----HHHHHHHcCCCeEEEEEeccc
Confidence            4568999999964         3445555433  3 589999987533332211     12233346889655 999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCc-----ccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE-----SSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~-----~~i~~L~~~Id~~~  216 (236)
                      +++....+++..                   +.+.+.+..  +-+...+++|+|+.+.     ....+++..|+..-
T Consensus       145 ~~~~~~~~~~~~-------------------~~l~~~~~~--~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~  200 (225)
T cd01882         145 LFKKNKTLRKTK-------------------KRLKHRFWT--EVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMK  200 (225)
T ss_pred             cCCcHHHHHHHH-------------------HHHHHHHHH--hhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCC
Confidence            985431221111                   111111110  0123478999986655     44566777777643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.0008  Score=67.57  Aligned_cols=127  Identities=17%  Similarity=0.205  Sum_probs=72.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-.++|||||       |.+..++=.+- +.-+++ ++.++|-++-..|...=|.     ..+-+=..|+|.+|||+|-+
T Consensus       540 Pg~lvIdtpg-------hEsFtnlRsrg-sslC~~-aIlvvdImhGlepqtiESi-----~lLR~rktpFivALNKiDRL  605 (1064)
T KOG1144|consen  540 PGLLVIDTPG-------HESFTNLRSRG-SSLCDL-AILVVDIMHGLEPQTIESI-----NLLRMRKTPFIVALNKIDRL  605 (1064)
T ss_pred             CeeEEecCCC-------chhhhhhhhcc-ccccce-EEEEeehhccCCcchhHHH-----HHHHhcCCCeEEeehhhhhh
Confidence            3579999999       23333322222 122443 7888999998899887664     44444589999999999975


Q ss_pred             cchhHhhhhccccHHHHHHHhhh-------cchhHHHHHHHHHHHH-------hh--ccC-CeeEEEeeccCcccHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQ-------HMAPQFAKLNKSLIEL-------VD--EYS-MVSFMPLDLRKESSIRYVL  209 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~-------~~~~~~~~l~~~l~~l-------i~--d~~-lv~f~pls~~d~~~i~~L~  209 (236)
                      -      .|-......+.+.+..       .+..++......+++-       ..  +-+ .++.+|-|+..++||-+|+
T Consensus       606 Y------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl  679 (1064)
T KOG1144|consen  606 Y------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLL  679 (1064)
T ss_pred             c------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHH
Confidence            2      2222111111122211       1111222211111110       11  112 3899999999999999998


Q ss_pred             HHHH
Q 026584          210 SQID  213 (236)
Q Consensus       210 ~~Id  213 (236)
                      ..+=
T Consensus       680 ~llv  683 (1064)
T KOG1144|consen  680 LLLV  683 (1064)
T ss_pred             HHHH
Confidence            7653

>cd04177 RSR1 RSR1 subgroup

Probab=97.60  E-value=0.00065  Score=55.09  Aligned_cols=108  Identities=12%  Similarity=0.158  Sum_probs=61.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~DL  145 (236)
                      .-++|||||-++..       +.+..-+ +.. .+|+++|..   ++..+-+.  +.-.+.- ..+-+.|.+.|.||+|+
T Consensus        51 ~~i~Dt~G~~~~~~-------~~~~~~~-~~~-~~vlv~~~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~  118 (168)
T cd04177          51 LEILDTAGTEQFTA-------MRELYIK-SGQ-GFLLVYSVT---SEASLNELGELREQVLRIKDSDNVPMVLVGNKADL  118 (168)
T ss_pred             EEEEeCCCcccchh-------hhHHHHh-hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence            46899999876422       1122211 222 456666654   33333222  1111111 12347999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .... ..    .  .+            .       ...+...++.+.+++.|+++++++..++..+=+
T Consensus       119 ~~~~-~~----~--~~------------~-------~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177         119 EDDR-QV----S--RE------------D-------GVSLSQQWGNVPFYETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             cccC-cc----C--HH------------H-------HHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            6432 11    0  00            0       001223566678999999999999999988754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01866 Rab2 Rab2 subfamily

Probab=97.59  E-value=0.0023  Score=51.93  Aligned_cols=109  Identities=15%  Similarity=0.158  Sum_probs=62.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|.|||||-++       +.+.....+ +.. ++++++|+.   ++..|-..  ++..+.....-+.|.|.|.||+|+
T Consensus        54 ~~~i~Dt~G~~~~-------~~~~~~~~~-~~d-~il~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl  121 (168)
T cd01866          54 KLQIWDTAGQESF-------RSITRSYYR-GAA-GALLVYDIT---RRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL  121 (168)
T ss_pred             EEEEEECCCcHHH-------HHHHHHHhc-cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            5789999997542       222222212 333 589999976   45544322  222222212237899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.. ..      ..+.            .+.       +....+ ..++++|+.+++++.+++..+-+.
T Consensus       122 ~~~~-~~------~~~~------------~~~-------~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~  164 (168)
T cd01866         122 ESRR-EV------SYEE------------GEA-------FAKEHG-LIFMETSAKTASNVEEAFINTAKE  164 (168)
T ss_pred             cccc-CC------CHHH------------HHH-------HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            6432 11      0000            001       111222 468999999999999998766443

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01892 Miro2 Miro2 subfamily

Probab=97.58  E-value=0.00063  Score=55.76  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +.+.|++||-+......      .++  .+.. ++++++|+   +++..|-...-+--.....-+.|.+.|.||+|+.+.
T Consensus        56 l~~~d~~g~~~~~~~~~------~~~--~~~d-~~llv~d~---~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          56 LILREVGEDEVAILLND------AEL--AACD-VACLVYDS---SDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             EEEEecCCcccccccch------hhh--hcCC-EEEEEEeC---CCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence            45667777765321110      112  2344 57889996   455554432110001111237999999999998643


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      . ..  ... ..               .       ++...++...++++|+.++++++.++..+-+...
T Consensus       124 ~-~~--~~~-~~---------------~-------~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         124 Q-QR--YEV-QP---------------D-------EFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             c-cc--ccc-CH---------------H-------HHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            2 10  000 00               0       1123345445689999999999999999877653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=97.57  E-value=0.0014  Score=52.35  Aligned_cols=109  Identities=10%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl  146 (236)
                      ++.++|||||-+....       ....-+ +.. ++++++|+.......... .++..+... ..-+.|.+.|.||+|+.
T Consensus        50 ~~~l~D~~g~~~~~~~-------~~~~~~-~~d-~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          50 KLAIWDTAGQERFRTL-------TSSYYR-GAQ-GVILVYDVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             EEEEEECCCchhhhhh-------hHHHhC-CCC-EEEEEEECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccc
Confidence            4688899997543211       111212 334 588889975433322222 222222222 13579999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ....        +.+            ...+       +.... -..++++|+++++++++++..+=+
T Consensus       120 ~~~~--------~~~------------~~~~-------~~~~~-~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863         120 NREV--------TRE------------EGLK-------FARKH-NMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             cccc--------CHH------------HHHH-------HHHHc-CCEEEEEecCCCCCHHHHHHHHHH
Confidence            3320        000            0011       11122 257999999999999999987644

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.55  E-value=0.0013  Score=54.84  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~  143 (236)
                      .+-|.|||||-+.       +.+....- .+.. +++|++|+..   +..+-... .-+...++    -+.|.+.|.||+
T Consensus        62 ~~~i~D~~Gq~~~-------~~~~~~~~-~~a~-~iI~V~D~s~---~~s~~~~~-~~l~~~l~~~~~~~~piilv~NK~  128 (181)
T PLN00223         62 SFTVWDVGGQDKI-------RPLWRHYF-QNTQ-GLIFVVDSND---RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQ  128 (181)
T ss_pred             EEEEEECCCCHHH-------HHHHHHHh-ccCC-EEEEEEeCCc---HHHHHHHH-HHHHHHhcCHhhCCCCEEEEEECC
Confidence            5789999998431       22222221 2344 5899999753   33332211 11111111    278999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+-... .        .+.+...+                ++ ...  .-..+++.|+++++++.+++..+-+.+
T Consensus       129 Dl~~~~-~--------~~~~~~~l----------------~l-~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        129 DLPNAM-N--------AAEITDKL----------------GL-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             CCCCCC-C--------HHHHHHHh----------------Cc-cccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence            985332 1        11111111                00 011  113577899999999999999886543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.54  E-value=0.0011  Score=62.17  Aligned_cols=140  Identities=14%  Similarity=0.161  Sum_probs=81.6

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHHHHHHH-h-h-CCCceEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-K-S-RNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L-~-~-~~~~~~~V  104 (236)
                      ||-|.-.-++.|..+-.....+...          ......+.|+||||+.+   ....+...+... . . .+.. +++
T Consensus         8 ~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~---~~~~~~~~~~~~~~~~~~~ad-~vl   83 (429)
T TIGR03594         8 PNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE---DDDGLDKQIREQAEIAIEEAD-VIL   83 (429)
T ss_pred             CCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC---cchhHHHHHHHHHHHHHhhCC-EEE
Confidence            6777777777776532111111111          01133588999999643   222222222211 1 1 2333 689


Q ss_pred             EeecCCCccchhh-HHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          105 YLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       105 ~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      +++|+..-..+.+ .+..      .+-+.+.|.+.|.||+|+.+.....                       .       
T Consensus        84 ~vvD~~~~~~~~d~~i~~------~l~~~~~piilVvNK~D~~~~~~~~-----------------------~-------  127 (429)
T TIGR03594        84 FVVDGREGLTPEDEEIAK------WLRKSGKPVILVANKIDGKKEDAVA-----------------------A-------  127 (429)
T ss_pred             EEEeCCCCCCHHHHHHHH------HHHHhCCCEEEEEECccCCcccccH-----------------------H-------
Confidence            9999975333322 2322      2335789999999999986533100                       0       


Q ss_pred             HHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      + ...+++..++++|+..+.++..++..+-+.+.-
T Consensus       128 ~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       128 E-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             H-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence            0 123455678999999999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04144 Ras2 Ras2 subfamily

Probab=97.53  E-value=0.00069  Score=56.50  Aligned_cols=109  Identities=14%  Similarity=0.244  Sum_probs=62.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhh---cCCCEEEEeccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILSKM  143 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~---l~lP~InVlsK~  143 (236)
                      +-|.|||||-+...    ++.  ..++  +.. ++++++|..   ++..|  +..++..+.....   -+.|.|.|.||+
T Consensus        49 l~i~Dt~G~~~~~~----~~~--~~~~--~ad-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~  116 (190)
T cd04144          49 LEVLDTAGQEEYTA----LRD--QWIR--EGE-GFILVYSIT---SRSTFERVERFREQIQRVKDESAADVPIMIVGNKC  116 (190)
T ss_pred             EEEEECCCchhhHH----HHH--HHHH--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEECh
Confidence            56799999854222    111  1232  223 567777864   33333  2233333322221   368999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+.... .+..                  ..       ..++...++ ..|+++|+.+++++.+++..+-+.+
T Consensus       117 Dl~~~~-~v~~------------------~~-------~~~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~l  162 (190)
T cd04144         117 DKVYER-EVST------------------EE-------GAALARRLG-CEFIEASAKTNVNVERAFYTLVRAL  162 (190)
T ss_pred             hccccC-ccCH------------------HH-------HHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            996432 1100                  00       011223445 4799999999999999999888754

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04128 Spg1 Spg1p

Probab=97.53  E-value=0.0021  Score=53.68  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=61.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.||+||-++..       +.... -.+.. ++++++|.   +++..|-.  .++--+.....-..| |.|.||+||.
T Consensus        51 l~iwDt~G~~~~~~-------~~~~~-~~~a~-~iilv~D~---t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~  117 (182)
T cd04128          51 FSIWDLGGQREFIN-------MLPLV-CNDAV-AILFMFDL---TRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF  117 (182)
T ss_pred             EEEEeCCCchhHHH-------hhHHH-CcCCC-EEEEEEEC---cCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence            46778888855221       11111 12333 57888995   44554433  232222222123466 6789999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ...     ..               ....+...++-..++ ..|+++|+++++++++++..+-+.+
T Consensus       118 ~~~-~~~-----~~---------------~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l  165 (182)
T cd04128         118 ADL-PPE-----EQ---------------EEITKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKA  165 (182)
T ss_pred             ccc-cch-----hh---------------hhhHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            421 000     00               000011112223344 6799999999999999999887654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03118 Rab family protein; Provisional

Probab=97.52  E-value=0.0015  Score=55.36  Aligned_cols=111  Identities=13%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHH-hhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAM-VQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m-~~l~lP~InVlsK~  143 (236)
                      .+.|+|||||.+...    +  .-..+ + +.. ++|+++|+..   +..|-..   +.--+... ..-++|.+.|.||+
T Consensus        63 ~l~l~Dt~G~~~~~~----~--~~~~~-~-~~d-~~vlv~D~~~---~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~  130 (211)
T PLN03118         63 KLTIWDTAGQERFRT----L--TSSYY-R-NAQ-GIILVYDVTR---RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV  130 (211)
T ss_pred             EEEEEECCCchhhHH----H--HHHHH-h-cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            458999999865321    1  11223 2 333 5888899754   3333322   11111111 12468999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+.... ..    .  .+.            ..       .+..+++ ..|+++|+++++++++++..+-+.+.
T Consensus       131 Dl~~~~-~i----~--~~~------------~~-------~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        131 DRESER-DV----S--REE------------GM-------ALAKEHG-CLFLECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             cccccC-cc----C--HHH------------HH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            996432 11    0  000            00       1112233 46999999999999999999987653

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.51  E-value=0.0021  Score=53.39  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~  143 (236)
                      ++.++|||||...       +.+. .++  .+.. +++|++|+.   ++..+-..  .+..+.-. ..-+.|.+.|+||+
T Consensus        62 ~~~~~D~~G~~~~-------~~~~~~~~--~~ad-~ii~vvD~~---~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~  128 (184)
T smart00178       62 KFTTFDLGGHQQA-------RRLWKDYF--PEVN-GIVYLVDAY---DKERFAESKRELDALLSDEELATVPFLILGNKI  128 (184)
T ss_pred             EEEEEECCCCHHH-------HHHHHHHh--CCCC-EEEEEEECC---cHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCc
Confidence            5789999998532       1111 223  2444 689999985   45444322  22221111 11479999999999


Q ss_pred             ccccc--hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          144 DLVTN--KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       144 DLl~~--~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      |+...  ..++.+.+..         ....   .     ...+  .......++|.|+.+++++.+++..+-+
T Consensus       129 Dl~~~~~~~~i~~~l~l---------~~~~---~-----~~~~--~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      129 DAPYAASEDELRYALGL---------TNTT---G-----SKGK--VGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             cccCCCCHHHHHHHcCC---------Cccc---c-----cccc--cCCceeEEEEeecccCCChHHHHHHHHh
Confidence            98532  1122222210         0000   0     0000  0234578999999999999999988754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00879 Sar1 Sar1 subfamily

Probab=97.51  E-value=0.00074  Score=55.79  Aligned_cols=118  Identities=17%  Similarity=0.225  Sum_probs=63.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~  143 (236)
                      .+.++|||||.+.       +.+. ..+  .+.+ .+++++|+.   ++..+-  ...+..+.-.. .-+.|.+.|.||+
T Consensus        64 ~~~l~D~~G~~~~-------~~~~~~~~--~~ad-~iilV~D~~---~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~  130 (190)
T cd00879          64 KFKTFDLGGHEQA-------RRLWKDYF--PEVD-GIVFLVDAA---DPERFQESKEELDSLLSDEELANVPFLILGNKI  130 (190)
T ss_pred             EEEEEECCCCHHH-------HHHHHHHh--ccCC-EEEEEEECC---cHHHHHHHHHHHHHHHcCccccCCCEEEEEeCC
Confidence            5689999998542       1221 223  2334 578899975   333331  11222211111 1369999999999


Q ss_pred             ccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHH
Q 026584          144 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       144 DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      |+....  .++..++.           .     ++....+.+.+.+... ...+++.|+++++++.+++..+-+
T Consensus       131 Dl~~~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         131 DLPGAVSEEELRQALG-----------L-----YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             CCCCCcCHHHHHHHhC-----------c-----ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence            986421  11111111           0     0000001112222322 267999999999999999998854

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.50  E-value=0.0021  Score=63.82  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=65.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +-|+|||||.++-      ....+.++..  . ++++++|+..-..+...- .+..    ....++|.|.|+||+|+...
T Consensus        76 lnLiDTPGh~dF~------~~v~~sl~~a--D-~aILVVDas~gv~~qt~~-~~~~----~~~~~lpiIvViNKiDl~~a  141 (600)
T PRK05433         76 LNLIDTPGHVDFS------YEVSRSLAAC--E-GALLVVDASQGVEAQTLA-NVYL----ALENDLEIIPVLNKIDLPAA  141 (600)
T ss_pred             EEEEECCCcHHHH------HHHHHHHHHC--C-EEEEEEECCCCCCHHHHH-HHHH----HHHCCCCEEEEEECCCCCcc
Confidence            5799999998732      1222334332  3 588999986533333321 1211    23468999999999998532


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .  ...        ...++               .+.+ ......++|+|+.++.++..|+..|-+.+.-
T Consensus       142 ~--~~~--------v~~ei---------------~~~l-g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        142 D--PER--------VKQEI---------------EDVI-GIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             c--HHH--------HHHHH---------------HHHh-CCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            1  110        00111               1110 0111358999999999999999999876643

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=97.50  E-value=0.00051  Score=65.76  Aligned_cols=132  Identities=14%  Similarity=0.102  Sum_probs=75.3

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchH-----HHHHHHHhhCCCceE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVL-----RNFVDHLKSRNFNVC  102 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~-----~~iv~~L~~~~~~~~  102 (236)
                      ||.|.-.-++.|...-..+..+....          .....+.++||||+-+ +  .+.+     ++....++  +.. +
T Consensus       224 ~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~--~~~ie~~gi~~~~~~~~--~aD-~  297 (449)
T PRK05291        224 PNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-T--DDEVEKIGIERSREAIE--EAD-L  297 (449)
T ss_pred             CCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-C--ccHHHHHHHHHHHHHHH--hCC-E
Confidence            78888888888874310222221111          1123578999999865 2  2222     22223332  334 5


Q ss_pred             EEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          103 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       103 ~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      +++++|+..-...... .  ++..    .-+.|.+.|+||+|+.+.. ...                             
T Consensus       298 il~VvD~s~~~s~~~~-~--~l~~----~~~~piiiV~NK~DL~~~~-~~~-----------------------------  340 (449)
T PRK05291        298 VLLVLDASEPLTEEDD-E--ILEE----LKDKPVIVVLNKADLTGEI-DLE-----------------------------  340 (449)
T ss_pred             EEEEecCCCCCChhHH-H--HHHh----cCCCCcEEEEEhhhccccc-hhh-----------------------------
Confidence            8999998543322221 1  1111    4579999999999996433 100                             


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                           ......++++|++++++++.|+..|-+.+.
T Consensus       341 -----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~  370 (449)
T PRK05291        341 -----EENGKPVIRISAKTGEGIDELREAIKELAF  370 (449)
T ss_pred             -----hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence                 011145678888888888888888776553

>cd04124 RabL2 RabL2 subfamily

Probab=97.47  E-value=0.0024  Score=51.50  Aligned_cols=103  Identities=12%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-++|||||-. |.      .+....- .+.. ++++++|+.   ++..+  +..++-.+.. ..-+.|.+.|.||+|+.
T Consensus        51 ~~i~Dt~G~~~-~~------~~~~~~~-~~~d-~~i~v~d~~---~~~s~~~~~~~~~~i~~-~~~~~p~ivv~nK~Dl~  117 (161)
T cd04124          51 VDFWDTAGQER-FQ------TMHASYY-HKAH-ACILVFDVT---RKITYKNLSKWYEELRE-YRPEIPCIVVANKIDLD  117 (161)
T ss_pred             EEEEeCCCchh-hh------hhhHHHh-CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-hCCCCcEEEEEECccCc
Confidence            45899999864 21      1222221 2333 688899964   34443  2223222221 12379999999999983


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ...  .            .        ...       ++.+.++ ..++++|++++.++++++..+-+
T Consensus       118 ~~~--~------------~--------~~~-------~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124         118 PSV--T------------Q--------KKF-------NFAEKHN-LPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             hhH--H------------H--------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence            211  0            0        000       1112232 57899999999999999988865

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.44  E-value=0.0039  Score=51.87  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHH-HHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASL-SAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sl-s~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+       .+.+....- .+.+ ++||++|+.   ++..+-...  +..+ .....-..|.+.|.||+|
T Consensus        62 ~~~l~D~~G~~~-------~~~~~~~~~-~~ad-~iI~v~D~t---~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  129 (182)
T PTZ00133         62 KFTMWDVGGQDK-------LRPLWRHYY-QNTN-GLIFVVDSN---DRERIGDAREELERMLSEDELRDAVLLVFANKQD  129 (182)
T ss_pred             EEEEEECCCCHh-------HHHHHHHHh-cCCC-EEEEEEeCC---CHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence            478999999843       122222221 2344 589999975   344433222  1111 100112689999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.... ..        +.+...+.-              .-+.. ..+.+.+.|+.+++++.+++..|-+.
T Consensus       130 l~~~~-~~--------~~i~~~l~~--------------~~~~~-~~~~~~~~Sa~tg~gv~e~~~~l~~~  176 (182)
T PTZ00133        130 LPNAM-ST--------TEVTEKLGL--------------HSVRQ-RNWYIQGCCATTAQGLYEGLDWLSAN  176 (182)
T ss_pred             CCCCC-CH--------HHHHHHhCC--------------CcccC-CcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence            85321 00        011011100              00011 12457799999999999999988654

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.44  E-value=0.0019  Score=54.20  Aligned_cols=113  Identities=12%  Similarity=0.234  Sum_probs=64.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      ..-|+|||||-+.   +. ++..  .+  .+.. ++++++|+.   ++..|-.  .++..+..... -+.|.|.|.||+|
T Consensus        48 ~l~i~D~~G~~~~---~~-~~~~--~~--~~ad-~vilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D  115 (198)
T cd04147          48 TLDILDTSGSYSF---PA-MRKL--SI--QNSD-AFALVYAVD---DPESFEEVERLREEILEVKEDKFVPIVVVGNKAD  115 (198)
T ss_pred             EEEEEECCCchhh---hH-HHHH--Hh--hcCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccc
Confidence            4578999997652   11 2111  12  2333 588899965   4444432  22222222222 4799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.+....+.      ...           ....     ..  ..++ ..++++|+.++.++.+++..+-+.++
T Consensus       116 l~~~~~~v~------~~~-----------~~~~-----~~--~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         116 SLEEERQVP------AKD-----------ALST-----VE--LDWN-CGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             ccccccccc------HHH-----------HHHH-----HH--hhcC-CcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            875321110      000           0000     00  1222 56899999999999999999887655

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.0016  Score=63.01  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=73.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCC--ceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF--NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~--~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .-.++||||.           .-+..+++.+.  .=++++++|+.----|...-|     ..-.-..+.|+|.++||+|.
T Consensus        56 ~itFiDTPGH-----------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA-----I~hak~a~vP~iVAiNKiDk  119 (509)
T COG0532          56 GITFIDTPGH-----------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEA-----INHAKAAGVPIVVAINKIDK  119 (509)
T ss_pred             eEEEEcCCcH-----------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHH-----HHHHHHCCCCEEEEEecccC
Confidence            5688999993           22333443333  346899999887777777654     55666689999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ....          ++....++.+..            =..+.|+- +.|+|+|+++++++.+|+..|=-
T Consensus       120 ~~~n----------p~~v~~el~~~g------------l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill  167 (509)
T COG0532         120 PEAN----------PDKVKQELQEYG------------LVPEEWGGDVIFVPVSAKTGEGIDELLELILL  167 (509)
T ss_pred             CCCC----------HHHHHHHHHHcC------------CCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence            7432          111112222110            12355655 89999999999999999988754

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.43  E-value=0.0023  Score=50.98  Aligned_cols=107  Identities=12%  Similarity=0.249  Sum_probs=60.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ++.|+|||||-+..       .+.+..-+ +.. +++++.|+.   ++..|-.  .++..+. ...-++|.+.|.||+|+
T Consensus        52 ~~~i~D~~G~~~~~-------~~~~~~~~-~~~-~~v~v~d~~---~~~s~~~l~~~~~~~~-~~~~~~p~iiv~nK~Dl  118 (162)
T cd04106          52 RLMLWDTAGQEEFD-------AITKAYYR-GAQ-ACILVFSTT---DRESFEAIESWKEKVE-AECGDIPMVLVQTKIDL  118 (162)
T ss_pred             EEEEeeCCchHHHH-------HhHHHHhc-CCC-EEEEEEECC---CHHHHHHHHHHHHHHH-HhCCCCCEEEEEEChhc
Confidence            46889999985421       11122212 333 466777754   4444332  2221111 11248999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .+.. ...      .    +        .       ..++...++ ..++++|++++.++++++..|-+
T Consensus       119 ~~~~-~v~------~----~--------~-------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         119 LDQA-VIT------N----E--------E-------AEALAKRLQ-LPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             cccc-CCC------H----H--------H-------HHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHH
Confidence            7543 110      0    0        0       001122333 37899999999999999988753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.00073  Score=61.70  Aligned_cols=77  Identities=22%  Similarity=0.453  Sum_probs=57.0

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE-ecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI-LSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV-lsK~D  144 (236)
                      +.+|--+||||      |.+.+++++.--.+.+.-..+|--.|...-......+      ++  -..+.|+|.| +||+|
T Consensus        74 ~rhyahVDcPG------HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL------la--rqvGvp~ivvflnK~D  139 (394)
T COG0050          74 NRHYAHVDCPG------HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL------LA--RQVGVPYIVVFLNKVD  139 (394)
T ss_pred             CceEEeccCCC------hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh------hh--hhcCCcEEEEEEeccc
Confidence            46899999999      8999999888877777777777777776655555543      11  2369999988 79999


Q ss_pred             cccchhHhhhhcc
Q 026584          145 LVTNKKEIEDYLN  157 (236)
Q Consensus       145 Ll~~~~~l~~~l~  157 (236)
                      ++++. ++.+..+
T Consensus       140 mvdd~-ellelVe  151 (394)
T COG0050         140 MVDDE-ELLELVE  151 (394)
T ss_pred             ccCcH-HHHHHHH
Confidence            99876 5554444

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.41  E-value=0.0019  Score=65.49  Aligned_cols=113  Identities=12%  Similarity=0.232  Sum_probs=66.6

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.++|||||-. |+     ......++.  .. ++++++|+.--..|..+-.     +......++|.|.|+||+|+.
T Consensus       295 ~kItfiDTPGhe~-F~-----~mr~rg~~~--aD-iaILVVDA~dGv~~QT~E~-----I~~~k~~~iPiIVViNKiDl~  360 (742)
T CHL00189        295 QKIVFLDTPGHEA-FS-----SMRSRGANV--TD-IAILIIAADDGVKPQTIEA-----INYIQAANVPIIVAINKIDKA  360 (742)
T ss_pred             eEEEEEECCcHHH-HH-----HHHHHHHHH--CC-EEEEEEECcCCCChhhHHH-----HHHHHhcCceEEEEEECCCcc
Confidence            3578999999743 21     112223322  23 5788888865444444322     223345789999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ...  .        +.+...+..     +.       .+.++++ .+.++|+|+.+++++..|+..|-..
T Consensus       361 ~~~--~--------e~v~~eL~~-----~~-------ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        361 NAN--T--------ERIKQQLAK-----YN-------LIPEKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             ccC--H--------HHHHHHHHH-----hc-------cchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence            421  1        111111110     00       0112333 3789999999999999999988654

>cd01875 RhoG RhoG subfamily

Probab=97.40  E-value=0.0017  Score=54.36  Aligned_cols=124  Identities=11%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-|.|||||-+...    +    ..+--.+.. +++++.|.   +++.+|-...  .........-++|.+.|.||+||-
T Consensus        53 l~i~Dt~G~e~~~~----l----~~~~~~~a~-~~ilvydi---t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~  120 (191)
T cd01875          53 LNLWDTAGQEEYDR----L----RTLSYPQTN-VFIICFSI---ASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR  120 (191)
T ss_pred             EEEEECCCchhhhh----h----hhhhccCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence            56899999954211    1    111112333 46666774   4566664432  111111122479999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      ......+...+..       +....       .+...++...++...|+..|+++++++++++..+-+.+-+
T Consensus       121 ~~~~~~~~~~~~~-------~~~v~-------~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         121 NDADTLKKLKEQG-------QAPIT-------PQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             cChhhHHHHhhcc-------CCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            4331111111000       00000       0011133456677899999999999999999999886643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.39  E-value=0.0025  Score=59.10  Aligned_cols=148  Identities=20%  Similarity=0.303  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcccC---------------CCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCce
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDNYL---------------DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNV  101 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~~~---------------~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~  101 (236)
                      ||.|..+-+.-+..-     +-+|.+|+               ...|++-|-||-||== .-.--+.++++.+++-  + 
T Consensus       168 PNaGKSTlls~vS~A-----kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt--~-  239 (369)
T COG0536         168 PNAGKSTLLSAVSAA-----KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT--R-  239 (369)
T ss_pred             CCCcHHHHHHHHhhc-----CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh--h-
Confidence            999988877666531     11344331               4569999999998833 2233478899998652  3 


Q ss_pred             EEEEeecCCCcc--chhhHHHHHHHHHHHH--hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026584          102 CAVYLLDSQFIT--DVTKFISGCMASLSAM--VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK  177 (236)
Q Consensus       102 ~~V~LiD~~~~~--dp~~~is~~l~sls~m--~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~  177 (236)
                      +.+|++|.+...  +|..=.-.+.--|...  --.+-|.+.|+||+|+....++++.+                      
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~----------------------  297 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEEL----------------------  297 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHH----------------------
Confidence            589999998664  3544333333333322  11489999999999976443222211                      


Q ss_pred             HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                       .+   .+.+..+...+.|+|+.+.++++.|+..+-+.+.-.
T Consensus       298 -~~---~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         298 -KK---ALAEALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             -HH---HHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence             11   223344555566699999999999988877765443

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.39  E-value=0.00091  Score=54.44  Aligned_cols=109  Identities=17%  Similarity=0.308  Sum_probs=60.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+-|+|||||-+...      .+.+... .+.. ++++++|+.   ++..|-.  .++..+... ..-++|.+.|.||+|
T Consensus        52 ~~~i~Dt~G~~~~~~------~~~~~~~-~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  120 (170)
T cd04115          52 KVQLWDTAGQERFRK------SMVQHYY-RNVH-AVVFVYDVT---NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD  120 (170)
T ss_pred             EEEEEeCCChHHHHH------hhHHHhh-cCCC-EEEEEEECC---CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            457899999865221      1233331 2344 578899975   4444322  222111111 123699999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC---cccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK---ESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d---~~~i~~L~~~Id~  214 (236)
                      +.... ++..       .           .-.+       +...++ ..|++.|+++   .++++.++..+=+
T Consensus       121 l~~~~-~~~~-------~-----------~~~~-------~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~  166 (170)
T cd04115         121 LREQI-QVPT-------D-----------LAQR-------FADAHS-MPLFETSAKDPSENDHVEAIFMTLAH  166 (170)
T ss_pred             chhhc-CCCH-------H-----------HHHH-------HHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHH
Confidence            86432 1100       0           0011       112232 6789999999   8888888876643

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.38  E-value=0.0033  Score=51.21  Aligned_cols=106  Identities=14%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.|||||-+ |...   +..  .+  .+.. ++|+++|+.   ++..+  +..++-.+..... +.|.+.|.||+|+.
T Consensus        51 l~i~Dt~G~~~-~~~~---~~~--~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~  117 (166)
T cd00877          51 FNVWDTAGQEK-FGGL---RDG--YY--IGGQ-CAIIMFDVT---SRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIK  117 (166)
T ss_pred             EEEEECCCChh-hccc---cHH--Hh--cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcc
Confidence            47899999954 3211   110  12  2333 578899965   44444  2333333333322 89999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.  .    .               ....    +++    ...-..+++.|++++++++.++..+-+-+
T Consensus       118 ~~~--~----~---------------~~~~----~~~----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877         118 DRK--V----K---------------AKQI----TFH----RKKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             ccc--C----C---------------HHHH----HHH----HHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            221  0    0               0000    111    12236899999999999999999887644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.37  E-value=0.0039  Score=59.55  Aligned_cols=144  Identities=14%  Similarity=0.206  Sum_probs=93.1

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCc---------eeeeeccchHHHHHHHHhhCC
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQ---------IELFTHVPVLRNFVDHLKSRN   98 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQ---------iElf~~~~~~~~iv~~L~~~~   98 (236)
                      ||-|...-++.|...=.-......+.          +...+|.+|||-|-         +|-|+-...++.    +..  
T Consensus       187 PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a----I~~--  260 (444)
T COG1160         187 PNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA----IER--  260 (444)
T ss_pred             CCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH----Hhh--
Confidence            99999998888874310111111111          11457999999994         677765544433    222  


Q ss_pred             CceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch-hHhhhhccccHHHHHHHhhhcchhHHH
Q 026584           99 FNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFA  176 (236)
Q Consensus        99 ~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~  176 (236)
                       .-+++.++|++- ++....-+      ++...+.+.|+|-|+||+|++... ..++++..                   
T Consensus       261 -a~vvllviDa~~~~~~qD~~i------a~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~-------------------  314 (444)
T COG1160         261 -ADVVLLVIDATEGISEQDLRI------AGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKK-------------------  314 (444)
T ss_pred             -cCEEEEEEECCCCchHHHHHH------HHHHHHcCCCeEEEEEccccCCchhhHHHHHHH-------------------
Confidence             236889999965 55555444      455678899999999999998752 12222111                   


Q ss_pred             HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +    +-..+.--+....+++|+.++.++..|+..|+++..
T Consensus       315 ~----i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         315 K----LRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             H----HHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            1    112222234578999999999999999999998753

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.37  E-value=0.0024  Score=52.54  Aligned_cols=107  Identities=15%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      .-|+|||||.+..       .+....-+ +.. +++++.|+.   ++..|-...  .-.+.-+ ..-++|.+.|.||+|+
T Consensus        52 l~i~Dt~G~~~~~-------~l~~~~~~-~~d-~~ilv~d~~---~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl  119 (172)
T cd04141          52 LDILDTAGQAEFT-------AMRDQYMR-CGE-GFIICYSVT---DRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL  119 (172)
T ss_pred             EEEEeCCCchhhH-------HHhHHHhh-cCC-EEEEEEECC---chhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhh
Confidence            5689999997521       11112212 233 577777854   444443321  1112211 2247999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .... .+    +  .+         .       ..   ++..+++ ..|++.|+.++.++++++..+-+
T Consensus       120 ~~~~-~v----~--~~---------~-------~~---~~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141         120 ESQR-QV----T--TE---------E-------GR---NLAREFN-CPFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             hhcC-cc----C--HH---------H-------HH---HHHHHhC-CEEEEEecCCCCCHHHHHHHHHH
Confidence            5432 11    0  00         0       01   1122344 58999999999999999988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.002  Score=64.08  Aligned_cols=138  Identities=18%  Similarity=0.327  Sum_probs=87.7

Q ss_pred             ChHHHHHHHHHHHH-hh--HHH----HHHHhcc--cCCCCEEEEeCCCceeeeeccch--HHHHH-HHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLED-NL--DDW----LAEELDN--YLDDDYLVFDCPGQIELFTHVPV--LRNFV-DHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~-n~--~~w----l~~~i~~--~~~~~Yil~D~PGQiElf~~~~~--~~~iv-~~L~~~~~~~~~V~  105 (236)
                      ||-|.-.-.+-|-. |-  ..|    .+++-..  +...++-++|.||   .|+..+.  =.++. +.|.+.+.. ++|+
T Consensus        12 PNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG---~YSL~~~S~DE~Var~~ll~~~~D-~ivn   87 (653)
T COG0370          12 PNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPG---TYSLTAYSEDEKVARDFLLEGKPD-LIVN   87 (653)
T ss_pred             CCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCC---cCCCCCCCchHHHHHHHHhcCCCC-EEEE
Confidence            89888888887762 22  123    1111111  2234689999999   7753332  12233 334344444 6899


Q ss_pred             eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026584          106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL  185 (236)
Q Consensus       106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l  185 (236)
                      ++||... ..+-|+      +.-++.++.|.|.++|++|..++++ ++    -|.               ++|.    +.
T Consensus        88 VvDAtnL-eRnLyl------tlQLlE~g~p~ilaLNm~D~A~~~G-i~----ID~---------------~~L~----~~  136 (653)
T COG0370          88 VVDATNL-ERNLYL------TLQLLELGIPMILALNMIDEAKKRG-IR----IDI---------------EKLS----KL  136 (653)
T ss_pred             EcccchH-HHHHHH------HHHHHHcCCCeEEEeccHhhHHhcC-Cc----ccH---------------HHHH----HH
Confidence            9998855 344444      3456779999999999999987653 11    011               1111    11


Q ss_pred             hhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          186 VDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +    -+..+|.+++.+++++++..+|.+
T Consensus       137 L----GvPVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370         137 L----GVPVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             h----CCCEEEEEeecCCCHHHHHHHHHH
Confidence            1    289999999999999999999976

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.35  E-value=0.0038  Score=50.92  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-++..      ....+++  +.+ +++|++|+........ +..++..+... ..-+.|.+.|.||+|+-
T Consensus        44 ~~~i~D~~G~~~~~~------~~~~~~~--~a~-~ii~V~D~s~~~s~~~-~~~~l~~l~~~~~~~~~piliv~NK~Dl~  113 (167)
T cd04161          44 EVCIFDLGGGANFRG------IWVNYYA--EAH-GLVFVVDSSDDDRVQE-VKEILRELLQHPRVSGKPILVLANKQDKK  113 (167)
T ss_pred             EEEEEECCCcHHHHH------HHHHHHc--CCC-EEEEEEECCchhHHHH-HHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence            467999999855211      1123332  334 6899999765322111 22222222111 11478999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCc------ccHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKE------SSIRYVLSQID  213 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~------~~i~~L~~~Id  213 (236)
                      ... ...        .+.+.+.             +-++.++.+. ..+++.|+.++      +++.+-+..+-
T Consensus       114 ~~~-~~~--------~i~~~~~-------------l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         114 NAL-LGA--------DVIEYLS-------------LEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             CCC-CHH--------HHHHhcC-------------cccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence            432 111        1111110             0012334444 68999999998      78988887764

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.33  E-value=0.0039  Score=52.44  Aligned_cols=129  Identities=13%  Similarity=0.217  Sum_probs=72.0

Q ss_pred             CCEEEEeCCCceeeee-ccchHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFT-HVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~-~~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      ....++||||--+... .......+.+.+.  ..+.. ++++++|+..++.....+-..+..+- =-+.--+.|.|+||+
T Consensus        49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~~t~~d~~~l~~l~~~f-g~~~~~~~ivv~T~~  126 (196)
T cd01852          49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGRFTEEEEQAVETLQELF-GEKVLDHTIVLFTRG  126 (196)
T ss_pred             eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCE-EEEEEEECCCcCHHHHHHHHHHHHHh-ChHhHhcEEEEEECc
Confidence            4689999999443221 1122334444443  23444 68999998775544333322211110 001125788999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEe-----eccCcccHHHHHHHHHHhhcc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPL-----DLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pl-----s~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |-+... .+++|+.....                   .+.++++..+- +++.+     +..+...+..|+..|++....
T Consensus       127 d~l~~~-~~~~~~~~~~~-------------------~l~~l~~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         127 DDLEGG-TLEDYLENSCE-------------------ALKRLLEKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             cccCCC-cHHHHHHhccH-------------------HHHHHHHHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            988655 56655542211                   22234444332 23333     356789999999999998764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.33  E-value=0.0024  Score=51.41  Aligned_cols=109  Identities=16%  Similarity=0.223  Sum_probs=61.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh--hcCCCEEEEecccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV--QLELPHVNILSKMD  144 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~--~l~lP~InVlsK~D  144 (236)
                      +-++|||||-..+..  ...   ..++  +.. ++++++|+..-   ..|-  ..++..+....  ..+.|.+.|.||+|
T Consensus        49 ~~i~D~~g~~~~~~~--~~~---~~~~--~~d-~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D  117 (165)
T cd04146          49 LEILDTAGQQQADTE--QLE---RSIR--WAD-GFVLVYSITDR---SSFDEISQLKQLIREIKKRDREIPVILVGNKAD  117 (165)
T ss_pred             EEEEECCCCcccccc--hHH---HHHH--hCC-EEEEEEECCCH---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            569999998852221  111   2232  233 57888997543   3332  22222222221  34899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCc-ccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE-SSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~-~~i~~L~~~Id~~  215 (236)
                      +.... .+    .  .                .-..   .+..+++ ..|++.|+.++ +++++++..+-+.
T Consensus       118 l~~~~-~v----~--~----------------~~~~---~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~  162 (165)
T cd04146         118 LLHYR-QV----S--T----------------EEGE---KLASELG-CLFFEVSAAEDYDGVHSVFHELCRE  162 (165)
T ss_pred             hHHhC-cc----C--H----------------HHHH---HHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHH
Confidence            84322 10    0  0                0001   1123444 57999999999 5999999887553

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03110 Rab GTPase; Provisional

Probab=97.31  E-value=0.0026  Score=54.47  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-|.|||||.++.       .+.....+ +. .++++++|+..   +..|  +..++-.+.-....++|.+.|.||+||
T Consensus        62 ~l~l~Dt~G~~~~~-------~~~~~~~~-~~-~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl  129 (216)
T PLN03110         62 KAQIWDTAGQERYR-------AITSAYYR-GA-VGALLVYDITK---RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL  129 (216)
T ss_pred             EEEEEECCCcHHHH-------HHHHHHhC-CC-CEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhc
Confidence            45778999986521       22222212 33 35788899753   3333  222322222222247999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ....                  ....    .++   ..++ ..|++.|+.++.+++.++..+-+.+
T Consensus       130 ~~~~-~~~~------------------~~~~----~l~---~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        130 NHLR-SVAE------------------EDGQ----ALA---EKEG-LSFLETSALEATNVEKAFQTILLEI  173 (216)
T ss_pred             cccc-CCCH------------------HHHH----HHH---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5322 1100                  0011    111   2232 6899999999999999998885543

>cd04110 Rab35 Rab35 subfamily

Probab=97.29  E-value=0.0044  Score=52.17  Aligned_cols=108  Identities=14%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +.|+|||||-. |.      .+....- .+.. ++++++|+.   ++..|-.  .++..+.. ..-..|.+.|.||+|+.
T Consensus        57 l~l~D~~G~~~-~~------~~~~~~~-~~a~-~iilv~D~~---~~~s~~~~~~~~~~i~~-~~~~~piivVgNK~Dl~  123 (199)
T cd04110          57 LQIWDTAGQER-FR------TITSTYY-RGTH-GVIVVYDVT---NGESFVNVKRWLQEIEQ-NCDDVCKVLVGNKNDDP  123 (199)
T ss_pred             EEEEeCCCchh-HH------HHHHHHh-CCCc-EEEEEEECC---CHHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccc
Confidence            56899999843 21      1112221 2333 578889964   4444432  22222211 12368999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. ...      ..            ...+       +...++ ..++++|+.++.++++++..|.+.+
T Consensus       124 ~~~-~~~------~~------------~~~~-------~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         124 ERK-VVE------TE------------DAYK-------FAGQMG-ISLFETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             ccc-ccC------HH------------HHHH-------HHHHcC-CEEEEEECCCCcCHHHHHHHHHHHH
Confidence            432 110      00            0011       112233 6799999999999999999988754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.28  E-value=0.0022  Score=56.04  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=72.5

Q ss_pred             CCEEEEeCCCceeeeecc-chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE---------
Q 026584           67 DDYLVFDCPGQIELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH---------  136 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~-~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~---------  136 (236)
                      .++-++|||||++..... ...+.++..++  +.. ++++++|+.........+...|-...+.+.-..|.         
T Consensus        47 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~--~ad-~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~g  123 (233)
T cd01896          47 AKIQLLDLPGIIEGAADGKGRGRQVIAVAR--TAD-LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKG  123 (233)
T ss_pred             eEEEEEECCCcccccccchhHHHHHHHhhc--cCC-EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecC
Confidence            346789999998865322 23344444442  344 57889998654333344444443333322222332         


Q ss_pred             -EEEecccccccc-hhHhhhhcc--------------ccHHHHHHHhhhcc--------hhHHHHHHHHHHHHhhccCCe
Q 026584          137 -VNILSKMDLVTN-KKEIEDYLN--------------PESQFLLSELNQHM--------APQFAKLNKSLIELVDEYSMV  192 (236)
Q Consensus       137 -InVlsK~DLl~~-~~~l~~~l~--------------~~~~~l~~~l~~~~--------~~~~~~l~~~l~~li~d~~lv  192 (236)
                       |.+.+|+++.+- .+....++.              ...+.|.+.+....        .-|.......-.+.+.+  ..
T Consensus       124 gi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~--~~  201 (233)
T cd01896         124 GINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLAR--QP  201 (233)
T ss_pred             CEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhc--CC
Confidence             334456666532 112222221              12334444443210        00000001111111111  13


Q ss_pred             eEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          193 SFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       193 ~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .++++|+.++.++++++..|-+.++.
T Consensus       202 ~~~~~SA~~g~gi~~l~~~i~~~L~~  227 (233)
T cd01896         202 NSVVISAEKGLNLDELKERIWDKLGL  227 (233)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence            58999999999999999999887653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04148 RGK RGK subfamily

Probab=97.28  E-value=0.0029  Score=54.51  Aligned_cols=110  Identities=15%  Similarity=0.083  Sum_probs=62.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh-hcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV-QLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~-~l~lP~InVlsK~D  144 (236)
                      ...++|||||-      ...+.   ...+.+.. ++++++|+.   ++..|-.  .++..+.... ..+.|.|.|.||+|
T Consensus        51 ~l~i~Dt~G~~------~~~~~---~~~~~~ad-~iilV~d~t---d~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D  117 (221)
T cd04148          51 TLVVIDHWEQE------MWTED---SCMQYQGD-AFVVVYSVT---DRSSFERASELRIQLRRNRQLEDRPIILVGNKSD  117 (221)
T ss_pred             EEEEEeCCCcc------hHHHh---HHhhcCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence            35689999986      11111   11111333 567777754   4444432  2222222111 14799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.+.. +..   .       +     .   ..    ++   ...++ ..|+++|+.++.+++.++..|-+.+.
T Consensus       118 l~~~~-~v~---~-------~-----~---~~----~~---a~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         118 LARSR-EVS---V-------Q-----E---GR----AC---AVVFD-CKFIETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             ccccc-eec---H-------H-----H---HH----HH---HHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            96533 110   0       0     0   01    11   12333 47899999999999999998877553

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04118 Rab24 Rab24 subfamily

Probab=97.27  E-value=0.0026  Score=52.76  Aligned_cols=111  Identities=11%  Similarity=0.094  Sum_probs=61.2

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      -++|||||-+..       .+.... -.+.. ++++++|+..   +..|-  ..++-.+ ....-+.|.+.|.||+|+.+
T Consensus        53 ~i~D~~G~~~~~-------~~~~~~-~~~~d-~iilv~d~~~---~~s~~~~~~~~~~i-~~~~~~~piilv~nK~Dl~~  119 (193)
T cd04118          53 GIWDTAGSERYE-------AMSRIY-YRGAK-AAIVCYDLTD---SSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             EEEECCCchhhh-------hhhHhh-cCCCC-EEEEEEECCC---HHHHHHHHHHHHHH-HhcCCCCCEEEEEEcccccc
Confidence            378999984421       111212 12344 6788898643   34332  2222111 11223799999999999865


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. ...+-..  .                   ..+.++...++ ..++++|+++++++..++..|-+.+
T Consensus       120 ~~-~~~~~v~--~-------------------~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         120 QD-RSLRQVD--F-------------------HDVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             cc-cccCccC--H-------------------HHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            32 1100000  0                   00011122333 5688999999999999999988744

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.24  E-value=0.0025  Score=61.26  Aligned_cols=138  Identities=9%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHH----HHhhCCCceEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVD----HLKSRNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~----~L~~~~~~~~~  103 (236)
                      ||-|.-.-++-|..+-........+.          .....+.++|||||-+-.  ......+.+    .++  +.. ++
T Consensus        47 ~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~--~aD-~i  121 (472)
T PRK03003         47 PNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAMR--TAD-AV  121 (472)
T ss_pred             CCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHHH--hCC-EE
Confidence            78888888887775320111111110          112357899999975311  111112211    222  334 68


Q ss_pred             EEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          104 VYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       104 V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      ++++|+..-..+. ..+.      ...-+.+.|.|.|.||+|+.+...+..                             
T Consensus       122 l~VvD~~~~~s~~~~~i~------~~l~~~~~piilV~NK~Dl~~~~~~~~-----------------------------  166 (472)
T PRK03003        122 LFVVDATVGATATDEAVA------RVLRRSGKPVILAANKVDDERGEADAA-----------------------------  166 (472)
T ss_pred             EEEEECCCCCCHHHHHHH------HHHHHcCCCEEEEEECccCCccchhhH-----------------------------
Confidence            9999987533322 2222      222356899999999999853210000                             


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                       + ....++-..+|+|+..+.++.+|+..|-+.+.
T Consensus       167 -~-~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~  199 (472)
T PRK03003        167 -A-LWSLGLGEPHPVSALHGRGVGDLLDAVLAALP  199 (472)
T ss_pred             -H-HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcc
Confidence             0 01123334579999999999999998877653

>cd04109 Rab28 Rab28 subfamily

Probab=97.23  E-value=0.0051  Score=52.44  Aligned_cols=111  Identities=13%  Similarity=0.177  Sum_probs=63.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh---hcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV---QLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~---~l~lP~InVlsK  142 (236)
                      .+.|.|||||- .|.      .+....- .+.. ++++++|+.   ++..|-..  ++-.+.-..   .-..|.|.|.||
T Consensus        51 ~~~i~Dt~G~~-~~~------~l~~~~~-~~ad-~iilV~D~t---~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK  118 (215)
T cd04109          51 TLQVWDIGGQS-IGG------KMLDKYI-YGAH-AVFLVYDVT---NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK  118 (215)
T ss_pred             EEEEEECCCcH-HHH------HHHHHHh-hcCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence            35789999983 232      2222221 2344 688999964   44444322  222221111   124678999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +||.... ..    .  .            ....       ++...++ ..++++|++++++++.++..+-+.+.
T Consensus       119 ~DL~~~~-~v----~--~------------~~~~-------~~~~~~~-~~~~~iSAktg~gv~~lf~~l~~~l~  166 (215)
T cd04109         119 TDLEHNR-TV----K--D------------DKHA-------RFAQANG-MESCLVSAKTGDRVNLLFQQLAAELL  166 (215)
T ss_pred             ccccccc-cc----C--H------------HHHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9996432 10    0  0            0011       2223445 46889999999999999999887543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04111 Rab39 Rab39 subfamily

Probab=97.23  E-value=0.0032  Score=53.78  Aligned_cols=109  Identities=16%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~DL  145 (236)
                      .-++|||||-. |      ..+....- .+. -++|+++|..   ++..|-..  ++.-+..... -..|.+.|.||+|+
T Consensus        54 l~i~Dt~G~~~-~------~~~~~~~~-~~~-d~iilv~D~~---~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          54 LQLWDTAGQER-F------RSITRSYY-RNS-VGVLLVFDIT---NRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEEeCCcchh-H------HHHHHHHh-cCC-cEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            46889999843 1      11111111 223 3578888954   44443332  2221111111 25678889999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+            .    ..   ++...++ +.|+..|+++++++.+++..|-+.+
T Consensus       122 ~~~~-~v----~--~~------------~----~~---~~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         122 ESQR-QV----T--RE------------E----AE---KLAKDLG-MKYIETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             cccc-cc----C--HH------------H----HH---HHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6432 11    0  00            0    01   1123444 7899999999999999999998743

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.22  E-value=0.0033  Score=64.21  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=64.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-. |+   .++  .+..+  ... ++++++|+..-..|...-.     +...-..++|.|.|+||+|+..
T Consensus       338 ~ItfiDTPGhe~-F~---~m~--~rga~--~aD-iaILVVdAddGv~~qT~e~-----i~~a~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        338 KITFLDTPGHEA-FT---AMR--ARGAQ--VTD-IVVLVVAADDGVMPQTIEA-----INHAKAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             EEEEEECCCCcc-ch---hHH--Hhhhh--hCC-EEEEEEECCCCCCHhHHHH-----HHHHHhcCCcEEEEEECccccc
Confidence            467999999754 32   111  12221  223 4778888764333433322     2333457899999999999953


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ..  ..        .....+..     +.       -+.++++. +.|+|+|+.+++++..|+..|-.
T Consensus       404 a~--~e--------~V~~eL~~-----~~-------~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        404 AN--PD--------RVKQELSE-----YG-------LVPEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             cC--HH--------HHHHHHHH-----hc-------ccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            21  11        11111110     00       01233443 78999999999999999988864

>cd04167 Snu114p Snu114p subfamily

Probab=97.21  E-value=0.004  Score=53.11  Aligned_cols=66  Identities=17%  Similarity=0.299  Sum_probs=39.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||.++.      ......+...  . ++++++|+..-.....   .-+  +......+.|.+.|+||+|++.
T Consensus        72 ~i~iiDtpG~~~f~------~~~~~~~~~a--D-~~llVvD~~~~~~~~~---~~~--~~~~~~~~~p~iiviNK~D~~~  137 (213)
T cd04167          72 LFNIIDTPGHVNFM------DEVAAALRLS--D-GVVLVVDVVEGVTSNT---ERL--IRHAILEGLPIVLVINKIDRLI  137 (213)
T ss_pred             EEEEEECCCCcchH------HHHHHHHHhC--C-EEEEEEECCCCCCHHH---HHH--HHHHHHcCCCEEEEEECcccCc
Confidence            46899999998742      1223334322  3 5888999864332211   111  1112235799999999999873

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PTZ00369 Ras-like protein; Provisional

Probab=97.20  E-value=0.0031  Score=52.48  Aligned_cols=110  Identities=12%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl~  147 (236)
                      +-|+|||||-+....       .....+ +. -++++++|+.....- ..+..+...+.-... -++|.|.|.||+|+.+
T Consensus        55 l~i~Dt~G~~~~~~l-------~~~~~~-~~-d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~  124 (189)
T PTZ00369         55 LDILDTAGQEEYSAM-------RDQYMR-TG-QGFLCVYSITSRSSF-EEIASFREQILRVKDKDRVPMILVGNKCDLDS  124 (189)
T ss_pred             EEEEeCCCCccchhh-------HHHHhh-cC-CEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            347999998763321       111212 33 357888886443221 123333322222211 2789999999999853


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .. .+..      .         .       ..   +....++ ..++.+|+++++++++++..+=+.
T Consensus       125 ~~-~i~~------~---------~-------~~---~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~  165 (189)
T PTZ00369        125 ER-QVST------G---------E-------GQ---ELAKSFG-IPFLETSAKQRVNVDEAFYELVRE  165 (189)
T ss_pred             cc-ccCH------H---------H-------HH---HHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHH
Confidence            22 1100      0         0       00   1112233 478999999999999999888554

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.20  E-value=0.0086  Score=55.40  Aligned_cols=28  Identities=7%  Similarity=-0.014  Sum_probs=25.4

Q ss_pred             eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          192 VSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       192 v~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      ..++++|+.+++++++|+..|++.+++-
T Consensus       235 ~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        235 PPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999987763

>cd04125 RabA_like RabA-like subfamily

Probab=97.19  E-value=0.0053  Score=50.80  Aligned_cols=110  Identities=17%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-++|||||-+ |      +.+....- .+.. ++++++|+..   +..|  +..++-.+.....-..|.|.|.||+|+.
T Consensus        51 ~~i~Dt~g~~~-~------~~~~~~~~-~~~d-~iilv~d~~~---~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~  118 (188)
T cd04125          51 LQIWDTNGQER-F------RSLNNSYY-RGAH-GYLLVYDVTD---QESFENLKFWINEINRYARENVIKVIVANKSDLV  118 (188)
T ss_pred             EEEEECCCcHH-H------HhhHHHHc-cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence            35789999643 1      11112221 2333 6888899753   3433  2333333333333468999999999987


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.. ....      +         .   -.    .+   .+.++ +.++.+|++++.++..++..+-+.+.
T Consensus       119 ~~~-~v~~------~---------~---~~----~~---~~~~~-~~~~evSa~~~~~i~~~f~~l~~~~~  162 (188)
T cd04125         119 NNK-VVDS------N---------I---AK----SF---CDSLN-IPFFETSAKQSINVEEAFILLVKLII  162 (188)
T ss_pred             ccc-cCCH------H---------H---HH----HH---HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            432 1100      0         0   00    11   11223 37999999999999999888776543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.19  E-value=0.0031  Score=63.69  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             CChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeec-cchH-HHHHHHHhhCCCceEEE
Q 026584           37 GPNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTH-VPVL-RNFVDHLKSRNFNVCAV  104 (236)
Q Consensus        37 GPNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~-~~~~-~~iv~~L~~~~~~~~~V  104 (236)
                      .||.|.-.-++.|...-........+          .....++.++||||+.+-... ...+ ......++  +.. +++
T Consensus       283 ~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~--~aD-~iL  359 (712)
T PRK09518        283 RPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS--LAD-AVV  359 (712)
T ss_pred             CCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH--hCC-EEE
Confidence            38999998888886431011111111          011235789999997632111 1111 11222232  344 689


Q ss_pred             EeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          105 YLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       105 ~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      |++|+..-..+. .-+...      +-+.+.|.|.|+||+|+.+......                    .+        
T Consensus       360 ~VvDa~~~~~~~d~~i~~~------Lr~~~~pvIlV~NK~D~~~~~~~~~--------------------~~--------  405 (712)
T PRK09518        360 FVVDGQVGLTSTDERIVRM------LRRAGKPVVLAVNKIDDQASEYDAA--------------------EF--------  405 (712)
T ss_pred             EEEECCCCCCHHHHHHHHH------HHhcCCCEEEEEECcccccchhhHH--------------------HH--------
Confidence            999996422222 223222      2357999999999999853220000                    00        


Q ss_pred             HHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                         ...++-..+|+|+.++.++.+|+..|-+.+.
T Consensus       406 ---~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~  436 (712)
T PRK09518        406 ---WKLGLGEPYPISAMHGRGVGDLLDEALDSLK  436 (712)
T ss_pred             ---HHcCCCCeEEEECCCCCCchHHHHHHHHhcc
Confidence               0112334579999999999999998887664

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.16  E-value=0.0061  Score=60.47  Aligned_cols=118  Identities=18%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+-|+||||+..+      .......++..  . ++++++|+..-..+ ..++      +......++|.|.|+||+|+
T Consensus        64 ~kinlIDTPGh~DF------~~ev~~~l~~a--D-~alLVVDa~~G~~~qT~~~------l~~a~~~~ip~IVviNKiD~  128 (594)
T TIGR01394        64 TKINIVDTPGHADF------GGEVERVLGMV--D-GVLLLVDASEGPMPQTRFV------LKKALELGLKPIVVINKIDR  128 (594)
T ss_pred             EEEEEEECCCHHHH------HHHHHHHHHhC--C-EEEEEEeCCCCCcHHHHHH------HHHHHHCCCCEEEEEECCCC
Confidence            35789999997552      22333444333  3 57889998642112 2222      33445679999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc----------cHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES----------SIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~----------~i~~L~~~Id~~  215 (236)
                      ....  .....        +++..    .+.++.     .-++.-.+.+++.|+.++.          ++..|+..|-+.
T Consensus       129 ~~a~--~~~v~--------~ei~~----l~~~~g-----~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~  189 (594)
T TIGR01394       129 PSAR--PDEVV--------DEVFD----LFAELG-----ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH  189 (594)
T ss_pred             CCcC--HHHHH--------HHHHH----HHHhhc-----cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence            5422  11111        11110    011100     0011112578999999985          788898888776


Q ss_pred             hcc
Q 026584          216 IQW  218 (236)
Q Consensus       216 ~~y  218 (236)
                      ++-
T Consensus       190 lP~  192 (594)
T TIGR01394       190 VPA  192 (594)
T ss_pred             CCC
Confidence            653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.16  E-value=0.007  Score=53.40  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=62.4

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH---------hhcCCCEEE
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM---------VQLELPHVN  138 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m---------~~l~lP~In  138 (236)
                      -|+|||||-. |.   .++.    +.-.+.. ++++++|..   ++..|-.  .++--+...         ..-+.|.|.
T Consensus        51 ~I~Dt~G~~~-~~---~~~~----~~~~~ad-~iIlVfdv~---~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIi  118 (247)
T cd04143          51 DILDTSGNHP-FP---AMRR----LSILTGD-VFILVFSLD---NRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI  118 (247)
T ss_pred             EEEECCCChh-hh---HHHH----HHhccCC-EEEEEEeCC---CHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEE
Confidence            4899999854 21   1222    2112333 567777765   4444422  222111111         123789999


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |.||+|+.... +.      ..+.                   +.+++....-..++++|+++++++++++..|-+....
T Consensus       119 vgNK~Dl~~~~-~v------~~~e-------------------i~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         119 CGNKADRDFPR-EV------QRDE-------------------VEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             EEECccchhcc-cc------CHHH-------------------HHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence            99999996422 11      0000                   1111112223679999999999999999999776544

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=97.16  E-value=0.0023  Score=56.36  Aligned_cols=129  Identities=16%  Similarity=0.341  Sum_probs=73.9

Q ss_pred             CEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      ..=|.|||||..++...  .....+   +  .+.. +.||++|++.  ..+.-.++..++.++ ...+-++..-..+-|+
T Consensus        49 ~l~iwD~pGq~~~~~~~~~~~~~~i---f--~~v~-~LIyV~D~qs~~~~~~l~~~~~~i~~l-~~~sp~~~v~vfiHK~  121 (232)
T PF04670_consen   49 PLNIWDCPGQDDFMENYFNSQREEI---F--SNVG-VLIYVFDAQSDDYDEDLAYLSDCIEAL-RQYSPNIKVFVFIHKM  121 (232)
T ss_dssp             EEEEEEE-SSCSTTHTTHTCCHHHH---H--CTES-EEEEEEETT-STCHHHHHHHHHHHHHH-HHHSTT-EEEEEEE-C
T ss_pred             EEEEEEcCCccccccccccccHHHH---H--hccC-EEEEEEEcccccHHHHHHHHHHHHHHH-HHhCCCCeEEEEEeec
Confidence            46799999999876532  222222   3  2333 6899999983  223333333333222 2344466666668999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhccccc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQWGED  221 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed  221 (236)
                      |+++....                    ...++...+.+.+.+.+.+  -+.|..-|+-|..-.+..=+.+++.++..+.
T Consensus       122 D~l~~~~r--------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~LiP~~~~  181 (232)
T PF04670_consen  122 DLLSEDER--------------------EEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQKLIPNLST  181 (232)
T ss_dssp             CCS-HHHH--------------------HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHTTSTTHCC
T ss_pred             ccCCHHHH--------------------HHHHHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHHHcccHHH
Confidence            99865411                    1234445555566666766  4899999999976556666666777766555


Q ss_pred             CC
Q 026584          222 AD  223 (236)
Q Consensus       222 ~~  223 (236)
                      .|
T Consensus       182 le  183 (232)
T PF04670_consen  182 LE  183 (232)
T ss_dssp             CC
T ss_pred             HH
Confidence            54

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04129 Rho2 Rho2 subfamily

Probab=97.15  E-value=0.0043  Score=51.52  Aligned_cols=123  Identities=11%  Similarity=0.108  Sum_probs=63.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ++.++|||||.+....+..      .++  +.+ +++++.|......-...-..++..+. ...-..|.|.|.||+|+..
T Consensus        50 ~l~i~Dt~g~~~~~~~~~~------~~~--~a~-~~llv~~i~~~~s~~~~~~~~~~~i~-~~~~~~piilvgnK~Dl~~  119 (187)
T cd04129          50 QLALWDTAGQEEYERLRPL------SYS--KAH-VILIGFAVDTPDSLENVRTKWIEEVR-RYCPNVPVILVGLKKDLRQ  119 (187)
T ss_pred             EEEEEECCCChhccccchh------hcC--CCC-EEEEEEECCCHHHHHHHHHHHHHHHH-HhCCCCCEEEEeeChhhhh
Confidence            3678899999764432211      121  223 34444454222111111112322222 2223799999999999854


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .....+......       ..  .    ..   ....+...++...|+..|+++++++++++..+-+..
T Consensus       120 ~~~~~~~~~~~~-------~~--~----~~---~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  172 (187)
T cd04129         120 DAVAKEEYRTQR-------FV--P----IQ---QGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAA  172 (187)
T ss_pred             CcccccccccCC-------cC--C----HH---HHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence            321111100000       00  0    00   001223456667899999999999999999998643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0015  Score=63.97  Aligned_cols=105  Identities=20%  Similarity=0.361  Sum_probs=66.5

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-----ch---hhHHHHHHHHHHHHhhcCCCEEE
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DV---TKFISGCMASLSAMVQLELPHVN  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-----dp---~~~is~~l~sls~m~~l~lP~In  138 (236)
                      ..+.|+|+||      |++..++.+......+   ++|.++||..-.     +|   ..-.+.      +.-.|++.++-
T Consensus       255 ~~~tliDaPG------hkdFi~nmi~g~sqaD---~avLvvd~s~~~FE~gfd~~gQtrEha~------llr~Lgi~qli  319 (603)
T KOG0458|consen  255 KIVTLIDAPG------HKDFIPNMISGASQAD---VAVLVVDASTGEFESGFDPGGQTREHAL------LLRSLGISQLI  319 (603)
T ss_pred             eeEEEecCCC------ccccchhhhccccccc---eEEEEEECCcchhhhccCCCCchHHHHH------HHHHcCcceEE
Confidence            3589999999      7777778777664444   688899996521     12   122222      22236788877


Q ss_pred             E-ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh-hccCC----eeEEEeeccCcccHHHH
Q 026584          139 I-LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSM----VSFMPLDLRKESSIRYV  208 (236)
Q Consensus       139 V-lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li-~d~~l----v~f~pls~~d~~~i~~L  208 (236)
                      | +||+|+++=.+                      .+|..+...+-.++ +..++    ++|+|+|...++++...
T Consensus       320 vaiNKmD~V~Wsq----------------------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  320 VAINKMDLVSWSQ----------------------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             EEeecccccCccH----------------------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            7 89999986221                      12222333333444 45554    79999999999988654

>cd04133 Rop_like Rop subfamily

Probab=97.07  E-value=0.004  Score=51.95  Aligned_cols=120  Identities=14%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      +.-|.||+||-+....++.      .+ + +.. +++++.|..   ++.+|-..   ++-.+. ...-+.|.|.|-||+|
T Consensus        50 ~l~i~Dt~G~~~~~~~~~~------~~-~-~a~-~~ilvyd~~---~~~Sf~~~~~~w~~~i~-~~~~~~piilvgnK~D  116 (176)
T cd04133          50 NLGLWDTAGQEDYNRLRPL------SY-R-GAD-VFVLAFSLI---SRASYENVLKKWVPELR-HYAPNVPIVLVGTKLD  116 (176)
T ss_pred             EEEEEECCCCccccccchh------hc-C-CCc-EEEEEEEcC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEeChh
Confidence            3568899999664332211      12 2 333 577777854   45555432   332222 2234899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |.+......  .+...    ..+.          .+...++...++...|+..|++++++|+.++..+-+..
T Consensus       117 l~~~~~~~~--~~~~~----~~v~----------~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         117 LRDDKQYLA--DHPGA----SPIT----------TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             hccChhhhh--hccCC----CCCC----------HHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence            965431110  00000    0000          01111233455655799999999999999999988753

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04169 RF3 RF3 subfamily

Probab=97.05  E-value=0.012  Score=52.50  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++|||||.++ .     ......++.  .. ++++++|+..-.....   ..+  +...-..++|.+.++||+|+.
T Consensus        71 ~~i~liDTPG~~df-~-----~~~~~~l~~--aD-~~IlVvda~~g~~~~~---~~i--~~~~~~~~~P~iivvNK~D~~  136 (267)
T cd04169          71 CVINLLDTPGHEDF-S-----EDTYRTLTA--VD-SAVMVIDAAKGVEPQT---RKL--FEVCRLRGIPIITFINKLDRE  136 (267)
T ss_pred             EEEEEEECCCchHH-H-----HHHHHHHHH--CC-EEEEEEECCCCccHHH---HHH--HHHHHhcCCCEEEEEECCccC
Confidence            46799999998652 1     223344432  33 5788999864211111   111  222334689999999999986


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      ..
T Consensus       137 ~a  138 (267)
T cd04169         137 GR  138 (267)
T ss_pred             CC
Confidence            53

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.05  E-value=0.019  Score=57.77  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++||||+.++.      ......++..  . ++++++|+..--.+..-   .+  +....+.++|++.|+||+|+.
T Consensus        75 ~~i~liDTPG~~~~~------~~~~~~l~~~--D-~~ilVvda~~g~~~~~~---~~--~~~~~~~~~p~ivviNK~D~~  140 (689)
T TIGR00484        75 HRINIIDTPGHVDFT------VEVERSLRVL--D-GAVAVLDAVGGVQPQSE---TV--WRQANRYEVPRIAFVNKMDKT  140 (689)
T ss_pred             eEEEEEECCCCcchh------HHHHHHHHHh--C-EEEEEEeCCCCCChhHH---HH--HHHHHHcCCCEEEEEECCCCC
Confidence            468999999987622      1233444333  3 58999998653222211   11  122345789999999999998


Q ss_pred             c
Q 026584          147 T  147 (236)
Q Consensus       147 ~  147 (236)
                      +
T Consensus       141 ~  141 (689)
T TIGR00484       141 G  141 (689)
T ss_pred             C
Confidence            5

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01858 NGP_1 NGP-1

Probab=97.05  E-value=0.0028  Score=51.40  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             EEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          102 CAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       102 ~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      ++++++|+..- ......+-..+-.    ...+.|.|.|+||+||+++. ++..++.                       
T Consensus        11 ~il~VvD~~~p~~~~~~~i~~~l~~----~~~~~p~ilVlNKiDl~~~~-~~~~~~~-----------------------   62 (157)
T cd01858          11 VVIQVLDARDPMGTRCKHVEEYLKK----EKPHKHLIFVLNKCDLVPTW-VTARWVK-----------------------   62 (157)
T ss_pred             EEEEEEECCCCccccCHHHHHHHHh----ccCCCCEEEEEEchhcCCHH-HHHHHHH-----------------------
Confidence            58999998652 3334444433321    23458999999999997543 2221111                       


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                         .+-+.+. ...+|+|++.+.+++.|+..+-...
T Consensus        63 ---~~~~~~~-~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          63 ---ILSKEYP-TIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ---HHhcCCc-EEEEEeeccccccHHHHHHHHHHHH
Confidence               0111121 2258999999999999988886643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04120 Rab12 Rab12 subfamily

Probab=97.04  E-value=0.0094  Score=50.95  Aligned_cols=110  Identities=14%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.|||||-. |.   .++.  ..+  .+.. ++++++|+.   ++.+|=  ..++-.+.....-+.|.|.|.||+||.
T Consensus        51 l~iwDtaGqe~-~~---~l~~--~y~--~~ad-~iIlVfDvt---d~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~  118 (202)
T cd04120          51 LQIWDTAGQER-FN---SITS--AYY--RSAK-GIILVYDIT---KKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE  118 (202)
T ss_pred             EEEEeCCCchh-hH---HHHH--HHh--cCCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            46889999843 21   1111  122  2333 578888965   444442  233322222222369999999999995


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ++..                      ....+++   ....-..|+..||+++++|.+++..+-+.+
T Consensus       119 ~~~-~v~~----------------------~~~~~~a---~~~~~~~~~etSAktg~gV~e~F~~l~~~~  162 (202)
T cd04120         119 TDR-EISR----------------------QQGEKFA---QQITGMRFCEASAKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             ccc-ccCH----------------------HHHHHHH---HhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            422 1110                      0001111   122125799999999999999997776543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK10218 GTP-binding protein; Provisional

Probab=97.04  E-value=0.0085  Score=59.62  Aligned_cols=116  Identities=12%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||..+.      ......++.  .. ++++++|+..- ..-..++      +......++|+|.|+||+|+.
T Consensus        69 ~inliDTPG~~df~------~~v~~~l~~--aD-g~ILVVDa~~G~~~qt~~~------l~~a~~~gip~IVviNKiD~~  133 (607)
T PRK10218         69 RINIVDTPGHADFG------GEVERVMSM--VD-SVLLVVDAFDGPMPQTRFV------TKKAFAYGLKPIVVINKVDRP  133 (607)
T ss_pred             EEEEEECCCcchhH------HHHHHHHHh--CC-EEEEEEecccCccHHHHHH------HHHHHHcCCCEEEEEECcCCC
Confidence            57899999987632      122233432  33 57889998642 2222333      223345799999999999985


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc----------cHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES----------SIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~----------~i~~L~~~Id~~~  216 (236)
                      ...  ..        ...+++.+    .+..+     ...++-.-+.++|.|+.++.          ++..|+..|-+.+
T Consensus       134 ~a~--~~--------~vl~ei~~----l~~~l-----~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        134 GAR--PD--------WVVDQVFD----LFVNL-----DATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCc--hh--------HHHHHHHH----HHhcc-----CccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            422  11        11111111    11110     11111112678999999997          5788887766655


Q ss_pred             c
Q 026584          217 Q  217 (236)
Q Consensus       217 ~  217 (236)
                      .
T Consensus       195 P  195 (607)
T PRK10218        195 P  195 (607)
T ss_pred             C
Confidence            4

>PRK12739 elongation factor G; Reviewed

Probab=97.03  E-value=0.014  Score=58.83  Aligned_cols=68  Identities=16%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++||||+.+      .+....+.+...+   ++++++|+..--.+.+- .  +  +....+.++|+|.++||+|+.
T Consensus        73 ~~i~liDTPG~~~------f~~e~~~al~~~D---~~ilVvDa~~g~~~qt~-~--i--~~~~~~~~~p~iv~iNK~D~~  138 (691)
T PRK12739         73 HRINIIDTPGHVD------FTIEVERSLRVLD---GAVAVFDAVSGVEPQSE-T--V--WRQADKYGVPRIVFVNKMDRI  138 (691)
T ss_pred             EEEEEEcCCCHHH------HHHHHHHHHHHhC---eEEEEEeCCCCCCHHHH-H--H--HHHHHHcCCCEEEEEECCCCC
Confidence            4689999999765      2234455554333   68999998654333221 1  1  222345789999999999998


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      ..
T Consensus       139 ~~  140 (691)
T PRK12739        139 GA  140 (691)
T ss_pred             CC
Confidence            53

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.03  E-value=0.0032  Score=60.75  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=71.9

Q ss_pred             CCEE--EEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           67 DDYL--VFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        67 ~~Yi--l~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..|+  +|||||.+- |++     ...+.|..-.   -++.++||..=-.... ++++-+|+.    .++-.|+|+||+|
T Consensus        74 ~~Y~lnlIDTPGHVD-FsY-----EVSRSLAACE---GalLvVDAsQGveAQT-lAN~YlAle----~~LeIiPViNKID  139 (603)
T COG0481          74 ETYVLNLIDTPGHVD-FSY-----EVSRSLAACE---GALLVVDASQGVEAQT-LANVYLALE----NNLEIIPVLNKID  139 (603)
T ss_pred             CEEEEEEcCCCCccc-eEE-----EehhhHhhCC---CcEEEEECccchHHHH-HHHHHHHHH----cCcEEEEeeeccc
Confidence            3464  799999888 442     2233353211   2678899975444333 566655555    7999999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |=..+          ++....+                  +-+-.|+  ...+-+|++++.+|++++.+|=+.++.
T Consensus       140 LP~Ad----------pervk~e------------------Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         140 LPAAD----------PERVKQE------------------IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             CCCCC----------HHHHHHH------------------HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            94322          2221111                  1122333  578889999999999999999887766

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.00  E-value=0.0017  Score=52.48  Aligned_cols=103  Identities=15%  Similarity=0.229  Sum_probs=66.6

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      -.|||||  |.|.|+..-..++..++.  ..+. +++   +...+|.+-++..+++.     +--|+|-|+||+||.++.
T Consensus        40 ~~IDTPG--Ey~~~~~~Y~aL~tt~~d--advi-~~v---~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~  106 (148)
T COG4917          40 GDIDTPG--EYFEHPRWYHALITTLQD--ADVI-IYV---HAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDA  106 (148)
T ss_pred             cccCCch--hhhhhhHHHHHHHHHhhc--ccee-eee---ecccCccccCCcccccc-----cccceEEEEecccccchH
Confidence            4789999  778887776667666643  3332 222   44566655555544322     356799999999998644


Q ss_pred             hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                       ++..                           ..+.+-+-|--..+-+|+.|+.|++.|...+.
T Consensus       107 -dI~~---------------------------~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917         107 -DISL---------------------------VKRWLREAGAEPIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             -hHHH---------------------------HHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence             2210                           00223345556788899999999999987664

>PRK00007 elongation factor G; Reviewed

Probab=97.00  E-value=0.015  Score=58.71  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.++||||+.+      .+......+...+   ++|+++|+..--.+.+.-     -+....+.++|+|.++||+|+.
T Consensus        75 ~~~~liDTPG~~~------f~~ev~~al~~~D---~~vlVvda~~g~~~qt~~-----~~~~~~~~~~p~iv~vNK~D~~  140 (693)
T PRK00007         75 HRINIIDTPGHVD------FTIEVERSLRVLD---GAVAVFDAVGGVEPQSET-----VWRQADKYKVPRIAFVNKMDRT  140 (693)
T ss_pred             eEEEEEeCCCcHH------HHHHHHHHHHHcC---EEEEEEECCCCcchhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence            4689999999644      3334555554333   689999986543333211     1223446799999999999998


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      +.
T Consensus       141 ~~  142 (693)
T PRK00007        141 GA  142 (693)
T ss_pred             CC
Confidence            53

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=96.95  E-value=0.015  Score=47.72  Aligned_cols=111  Identities=12%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHH-HHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLS-AMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls-~m~~l~lP~InVlsK~D  144 (236)
                      +.-|.|||||-+...    ++  -..+  .+.. ++++++|+.   ++..+  +..++-.+. ....-..|.+.|.||+|
T Consensus        50 ~l~i~Dt~G~~~~~~----~~--~~~~--~~ad-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~D  117 (170)
T cd04108          50 SLQLWDTAGQERFKC----IA--STYY--RGAQ-AIIIVFDLT---DVASLEHTRQWLEDALKENDPSSVLLFLVGTKKD  117 (170)
T ss_pred             EEEEEeCCChHHHHh----hH--HHHh--cCCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence            367899999955221    11  1112  2333 578888874   34444  223322221 11122467899999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.+.. +... .+               ....       .+...++ ..++.+|++++++++.++..+-+.
T Consensus       118 l~~~~-~~~~-~~---------------~~~~-------~~~~~~~-~~~~e~Sa~~g~~v~~lf~~l~~~  163 (170)
T cd04108         118 LSSPA-QYAL-ME---------------QDAI-------KLAAEMQ-AEYWSVSALSGENVREFFFRVAAL  163 (170)
T ss_pred             cCccc-cccc-cH---------------HHHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence            86432 1100 00               0000       1112233 478899999999999999887654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=96.93  E-value=0.013  Score=51.04  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ...++|||||.++-      ......++..  . ++++++|+..-..+..-   -+  +....+.++|.|.|+||+|+.
T Consensus        74 ~i~iiDTPG~~~f~------~~~~~~l~~a--D-~~ilVvD~~~g~~~~t~---~~--l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          74 LINLIDSPGHVDFS------SEVTAALRLC--D-GALVVVDAVEGVCVQTE---TV--LRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             EEEEECCCCccccH------HHHHHHHHhc--C-eeEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEEECCCcc
Confidence            35689999998722      2334445332  3 57888998653333221   11  222234579999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04121 Rab40 Rab40 subfamily

Probab=96.92  E-value=0.018  Score=48.59  Aligned_cols=107  Identities=10%  Similarity=0.215  Sum_probs=62.0

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      -+.|||||-. |      +.+....- .+.. ++++++|...   +..|-.  .++--+.... -+.|.|.|-||+||..
T Consensus        58 ~iwDt~G~~~-~------~~l~~~~~-~~ad-~illVfD~t~---~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~  124 (189)
T cd04121          58 QLWDTSGQGR-F------CTIFRSYS-RGAQ-GIILVYDITN---RWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF  124 (189)
T ss_pred             EEEeCCCcHH-H------HHHHHHHh-cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh
Confidence            5789999843 2      12222221 2333 6788888654   333322  2222222212 3899999999999953


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. .+    .  .    +     .       .++   +...++ ..|+..|++++.++++++..+-+.+
T Consensus       125 ~~-~v----~--~----~-----~-------~~~---~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         125 KR-QV----A--T----E-----Q-------AQA---YAERNG-MTFFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             cc-CC----C--H----H-----H-------HHH---HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            22 11    0  0    0     0       011   122344 5799999999999999999998754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.90  E-value=0.015  Score=52.66  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=42.5

Q ss_pred             cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CC-eeEEEeeccCcccHHHHH
Q 026584          132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SM-VSFMPLDLRKESSIRYVL  209 (236)
Q Consensus       132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~l-v~f~pls~~d~~~i~~L~  209 (236)
                      .+.|.+.|+||+|+.... .... ..                  ..+...+..+.... +. ..++++|+.++++++.|+
T Consensus       171 ~~~~~ivv~NK~Dl~~~~-~~~~-~~------------------~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~  230 (300)
T TIGR00750       171 MEIADIYVVNKADGEGAT-NVTI-AR------------------LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELW  230 (300)
T ss_pred             hhhccEEEEEcccccchh-HHHH-HH------------------HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHH
Confidence            489999999999997543 1100 00                  00001111122221 22 368999999999999999


Q ss_pred             HHHHHhhccc
Q 026584          210 SQIDNCIQWG  219 (236)
Q Consensus       210 ~~Id~~~~y~  219 (236)
                      ..|.+..++.
T Consensus       231 ~~i~~~~~~~  240 (300)
T TIGR00750       231 DAIEEHKTFL  240 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999876644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.89  E-value=0.0016  Score=55.30  Aligned_cols=104  Identities=21%  Similarity=0.281  Sum_probs=58.6

Q ss_pred             CCChHHHHHHHHHHHHhhHHHHHH--Hhc--------ccCCCCEEEEeCCCceeeeeccchHHHHHHHHh-hCCCceEEE
Q 026584           36 LGPNGGLIYCMEHLEDNLDDWLAE--ELD--------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAV  104 (236)
Q Consensus        36 LGPNGalv~~me~l~~n~~~wl~~--~i~--------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~~~~~~~~V  104 (236)
                      +||+||=.+++=+.+.+- .+..-  -++        .-....+-++|+||.--+-      .++++.+. ..+.+ ++|
T Consensus         9 ~Gps~SGKTaLf~~L~~~-~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr------~~~~~~~~~~~~~k-~II   80 (181)
T PF09439_consen    9 VGPSGSGKTALFSQLVNG-KTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR------SKLLDELKYLSNAK-GII   80 (181)
T ss_dssp             E-STTSSHHHHHHHHHHS-S---B---SSEEEECCGSSTCGTCECEEEETT-HCCC------HHHHHHHHHHGGEE-EEE
T ss_pred             EcCCCCCHHHHHHHHhcC-CcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHH------HHHHHhhhchhhCC-EEE
Confidence            699998888886555443 32110  000        0013468899999954432      34555532 22344 799


Q ss_pred             EeecCCCc----cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584          105 YLLDSQFI----TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus       105 ~LiD~~~~----~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      |++||...    .+.+.|+-.+|...... +-+.|.+.+.||.|+...
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence            99999753    34555555555444433 468999999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=96.89  E-value=0.0088  Score=57.29  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccch--HHHHHHHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPV--LRNFVDHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~~~~~~~~V~  105 (236)
                      ||.|.-.-++.|...-..+..+....          +....+.++|||||-+.......  +.+-...++  +.. ++++
T Consensus       212 ~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~--~aD-~il~  288 (442)
T TIGR00450       212 PNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK--QAD-LVIY  288 (442)
T ss_pred             CCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh--hCC-EEEE
Confidence            78888888888875310111111110          11224689999998764321111  112223332  344 5899


Q ss_pred             eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584          106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus       106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      ++|+..-.+....   ++   ....+.+.|.|.|+||+|+.+.
T Consensus       289 V~D~s~~~s~~~~---~l---~~~~~~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       289 VLDASQPLTKDDF---LI---IDLNKSKKPFILVLNKIDLKIN  325 (442)
T ss_pred             EEECCCCCChhHH---HH---HHHhhCCCCEEEEEECccCCCc
Confidence            9998654333332   21   1122358999999999999643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12740 elongation factor G; Reviewed

Probab=96.88  E-value=0.027  Score=56.38  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=41.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++.++||||+.++      .......+...  . ++++++|+..-......   -+  +......++|.+.|+||+|+.
T Consensus        60 ~~i~liDtPG~~~~------~~~~~~~l~~a--D-~vllvvd~~~~~~~~~~---~~--~~~~~~~~~p~iiv~NK~D~~  125 (668)
T PRK12740         60 HKINLIDTPGHVDF------TGEVERALRVL--D-GAVVVVCAVGGVEPQTE---TV--WRQAEKYGVPRIIFVNKMDRA  125 (668)
T ss_pred             EEEEEEECCCcHHH------HHHHHHHHHHh--C-eEEEEEeCCCCcCHHHH---HH--HHHHHHcCCCEEEEEECCCCC
Confidence            36899999998652      12233344332  3 57889998653222211   11  223345689999999999997


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      ..
T Consensus       126 ~~  127 (668)
T PRK12740        126 GA  127 (668)
T ss_pred             CC
Confidence            53

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.0068  Score=59.27  Aligned_cols=109  Identities=14%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      =+|||||.+-+      .-...+-|..-+   -++.++||..=--+.. ++++-+|+.    .++-.|+|+||+|+-+..
T Consensus       128 NLIDTPGHvDF------s~EVsRslaac~---G~lLvVDA~qGvqAQT-~anf~lAfe----~~L~iIpVlNKIDlp~ad  193 (650)
T KOG0462|consen  128 NLIDTPGHVDF------SGEVSRSLAACD---GALLVVDASQGVQAQT-VANFYLAFE----AGLAIIPVLNKIDLPSAD  193 (650)
T ss_pred             EeecCCCcccc------cceehehhhhcC---ceEEEEEcCcCchHHH-HHHHHHHHH----cCCeEEEeeeccCCCCCC
Confidence            37999996652      223333343211   3678899965433333 445545554    799999999999995432


Q ss_pred             hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                                ++....++.               + +.+...-..+-+|++.+-+++.++.+|=+.++-
T Consensus       194 ----------pe~V~~q~~---------------~-lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  194 ----------PERVENQLF---------------E-LFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             ----------HHHHHHHHH---------------H-HhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence                      222212111               1 123333588999999999999999988776654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.84  E-value=0.004  Score=50.48  Aligned_cols=81  Identities=14%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             EEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          102 CAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       102 ~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      ++++++|+..- ......+    .. ......+.|.|.|+||+||++.. ++..|+.                       
T Consensus         2 vvl~VvD~~~p~~~~~~~i----~~-~~~~~~~~p~IiVlNK~Dl~~~~-~~~~~~~-----------------------   52 (155)
T cd01849           2 VILEVLDARDPLGTRSPDI----ER-VLIKEKGKKLILVLNKADLVPKE-VLRKWLA-----------------------   52 (155)
T ss_pred             EEEEEEeccCCccccCHHH----HH-HHHhcCCCCEEEEEechhcCCHH-HHHHHHH-----------------------
Confidence            47899998542 2222222    11 22233589999999999997543 2222111                       


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                         . .........+++|+.++.+++.|...|-+.
T Consensus        53 ---~-~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~   83 (155)
T cd01849          53 ---Y-LRHSYPTIPFKISATNGQGIEKKESAFTKQ   83 (155)
T ss_pred             ---H-HHhhCCceEEEEeccCCcChhhHHHHHHHH
Confidence               0 011113568999999999999999988553

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd04126 Rab20 Rab20 subfamily

Probab=96.82  E-value=0.023  Score=49.35  Aligned_cols=133  Identities=11%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..|+|||||-. |.  . ++..  .+  .+.. ++++++|..   ++..|-+.  ++..+.-...-+.|.|.|.||+||.
T Consensus        46 l~iwDt~G~e~-~~--~-l~~~--~~--~~ad-~~IlV~Dvt---~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~  113 (220)
T cd04126          46 ISIWDTAGREQ-FH--G-LGSM--YC--RGAA-AVILTYDVS---NVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT  113 (220)
T ss_pred             EEEEeCCCccc-ch--h-hHHH--Hh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            57899999954 32  1 1111  12  2333 688899955   44444433  3333332223468999999999997


Q ss_pred             cchhHhhhhccccHHHHH-HHhhhc-chhHHHHHHHHHH------HHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLL-SELNQH-MAPQFAKLNKSLI------ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~-~~l~~~-~~~~~~~l~~~l~------~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .....-.  .+.++.... ...... ......++.+++.      +=+.-+.-+.|+..|+.++++|++++..+-+.
T Consensus       114 ~~~~~~~--~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~  188 (220)
T cd04126         114 EEGALAG--QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL  188 (220)
T ss_pred             ccccccc--ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence            5220000  000000000 000000 0000111111110      00001112579999999999999999887764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.011  Score=51.58  Aligned_cols=137  Identities=19%  Similarity=0.209  Sum_probs=76.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH---hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM---VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m---~~l~lP~InVlsK~DL  145 (236)
                      -=|||.||      |...-+++.++++..-.-..+||++||..+..--.=++-+|.-..+-   ..-..|.+.+-||.|+
T Consensus        84 ~~LVD~PG------H~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl  157 (238)
T KOG0090|consen   84 VTLVDLPG------HSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL  157 (238)
T ss_pred             eEEEeCCC------cHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence            36899999      66667788888852112246899999977554444444444443333   3456677777899999


Q ss_pred             ccc--hhHhhhhccccHHHHHHHhh------hcchhHHHHHHHHHHHHhhccC-------CeeEEEeeccCcccHHHHHH
Q 026584          146 VTN--KKEIEDYLNPESQFLLSELN------QHMAPQFAKLNKSLIELVDEYS-------MVSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       146 l~~--~~~l~~~l~~~~~~l~~~l~------~~~~~~~~~l~~~l~~li~d~~-------lv~f~pls~~d~~~i~~L~~  210 (236)
                      .-.  .+.+.+-++.....+.++-+      .+...+-.-+..    =-.||.       -++|.+-|++++ .+..+..
T Consensus       158 ~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~----~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~  232 (238)
T KOG0090|consen  158 FTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGK----EGEDFKFSHLEDQKVTFAEASAKTG-EIDQWES  232 (238)
T ss_pred             hhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc----cccccchhhcccceeEEeecccCcC-ChHHHHH
Confidence            842  22233333322222211110      000000000000    011221       278999999988 8899988


Q ss_pred             HHHHhh
Q 026584          211 QIDNCI  216 (236)
Q Consensus       211 ~Id~~~  216 (236)
                      .|++++
T Consensus       233 wi~~~l  238 (238)
T KOG0090|consen  233 WIREAL  238 (238)
T ss_pred             HHHHhC
Confidence            888753

>cd01856 YlqF YlqF

Probab=96.81  E-value=0.0073  Score=49.76  Aligned_cols=89  Identities=13%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584           88 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE  166 (236)
Q Consensus        88 ~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~  166 (236)
                      +++.+.++  +.. ++++++|+..- ......+..       .. .+.|++.|+||+||.... ....+.          
T Consensus        11 ~~~~~~i~--~aD-~il~v~D~~~~~~~~~~~i~~-------~~-~~k~~ilVlNK~Dl~~~~-~~~~~~----------   68 (171)
T cd01856          11 RQIKEKLK--LVD-LVIEVRDARIPLSSRNPLLEK-------IL-GNKPRIIVLNKADLADPK-KTKKWL----------   68 (171)
T ss_pred             HHHHHHHh--hCC-EEEEEeeccCccCcCChhhHh-------Hh-cCCCEEEEEehhhcCChH-HHHHHH----------
Confidence            34444443  334 58999998642 222222211       11 268999999999996432 111110          


Q ss_pred             hhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          167 LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       167 l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                                       +.+... ...++++|+.++++++.|...+-+.+
T Consensus        69 -----------------~~~~~~-~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          69 -----------------KYFESK-GEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             -----------------HHHHhc-CCeEEEEECCCcccHHHHHHHHHHHH
Confidence                             001111 14678999999999999999988754

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.79  E-value=0.0071  Score=54.07  Aligned_cols=90  Identities=17%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584           88 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE  166 (236)
Q Consensus        88 ~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~  166 (236)
                      +.+-+.+++  .. ++++++|+..- +.....+...       + -+.|+|.|+||+||.+.. +...|.+         
T Consensus        13 ~~~~~~l~~--aD-vVl~V~Dar~p~~~~~~~i~~~-------l-~~kp~IiVlNK~DL~~~~-~~~~~~~---------   71 (276)
T TIGR03596        13 REIKEKLKL--VD-VVIEVLDARIPLSSRNPMIDEI-------R-GNKPRLIVLNKADLADPA-VTKQWLK---------   71 (276)
T ss_pred             HHHHHHHhh--CC-EEEEEEeCCCCCCCCChhHHHH-------H-CCCCEEEEEEccccCCHH-HHHHHHH---------
Confidence            334444433  33 68999999642 2222222221       1 278999999999996432 2221111         


Q ss_pred             hhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          167 LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       167 l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                             .+           ...+ ..++++|+.++.+++.|...+.+...
T Consensus        72 -------~~-----------~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        72 -------YF-----------EEKG-IKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             -------HH-----------HHcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence                   01           1111 36789999999999999988877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04117 Rab15 Rab15 subfamily

Probab=96.75  E-value=0.012  Score=47.59  Aligned_cols=108  Identities=16%  Similarity=0.247  Sum_probs=60.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-+.|||||-....       +....- .+.. ++++++|...   +..|  +..++-.+.....-++|.+.|-||+||.
T Consensus        51 l~i~D~~g~~~~~~-------~~~~~~-~~~~-~~i~v~d~~~---~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  118 (161)
T cd04117          51 IQIWDTAGQERYQT-------ITKQYY-RRAQ-GIFLVYDISS---ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE  118 (161)
T ss_pred             EEEEeCCCcHhHHh-------hHHHHh-cCCc-EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            46889999754222       111121 2333 5788888653   3333  2333322222222368999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.. ....                      +....+   ...++ ..|++.|++++.++++++..|-+.
T Consensus       119 ~~~-~v~~----------------------~~~~~~---~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         119 QKR-QVGD----------------------EQGNKL---AKEYG-MDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ccc-CCCH----------------------HHHHHH---HHHcC-CEEEEEeCCCCCCHHHHHHHHHhh
Confidence            432 1100                      000011   11223 578999999999999999887543

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=96.75  E-value=0.018  Score=50.44  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=67.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .-|.|||||-+ |..   ++.  ...  .+.. +++++.|.   +++..|-+.   |+--+.. ..-+.|.|.|.||+||
T Consensus        63 l~iwDTaG~e~-~~~---~~~--~~~--~~ad-~vIlVyDi---t~~~Sf~~~~~~w~~~i~~-~~~~~piilVgNK~DL  129 (232)
T cd04174          63 LSLWDTSGSPY-YDN---VRP--LCY--SDSD-AVLLCFDI---SRPETVDSALKKWKAEIMD-YCPSTRILLIGCKTDL  129 (232)
T ss_pred             EEEEeCCCchh-hHH---HHH--HHc--CCCc-EEEEEEEC---CChHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccc
Confidence            56889999854 321   111  112  2344 57888886   466666542   3222221 2237899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~  215 (236)
                      -...+.+......        -.....      .....++...++...|+..|+++++ ++++++..+-+.
T Consensus       130 ~~~~~~~~~l~~~--------~~~~Vs------~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~  186 (232)
T cd04174         130 RTDLSTLMELSNQ--------KQAPIS------YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL  186 (232)
T ss_pred             ccccchhhhhccc--------cCCcCC------HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence            5432111110000        000000      0111234456676689999999997 899999987664

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=96.73  E-value=0.028  Score=45.65  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +.-++|||||-++-.    ++.  ..++  +.+ ++++++|+..   +..+-+.  ++..+. ...-+.|.+.|.||+|+
T Consensus        45 ~l~i~Dt~G~~~~~~----~~~--~~~~--~ad-~ii~V~D~t~---~~s~~~~~~~l~~~~-~~~~~~piilv~NK~Dl  111 (164)
T cd04162          45 IMELLEIGGSQNLRK----YWK--RYLS--GSQ-GLIFVVDSAD---SERLPLARQELHQLL-QHPPDLPLVVLANKQDL  111 (164)
T ss_pred             EEEEEECCCCcchhH----HHH--HHHh--hCC-EEEEEEECCC---HHHHHHHHHHHHHHH-hCCCCCcEEEEEeCcCC
Confidence            468899999965321    111  2232  334 5789999654   3333221  112121 11248999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC------cccHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK------ESSIRYVLSQI  212 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d------~~~i~~L~~~I  212 (236)
                      .... ...        .+...+.  .           .++..+.+ ..|++.|+.+      ++++++++...
T Consensus       112 ~~~~-~~~--------~i~~~~~--~-----------~~~~~~~~-~~~~~~Sa~~~~s~~~~~~v~~~~~~~  161 (164)
T cd04162         112 PAAR-SVQ--------EIHKELE--L-----------EPIARGRR-WILQGTSLDDDGSPSRMEAVKDLLSQL  161 (164)
T ss_pred             cCCC-CHH--------HHHHHhC--C-----------hhhcCCCc-eEEEEeeecCCCChhHHHHHHHHHHHH
Confidence            5432 111        1111110  0           01222333 5788999999      88888877653

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=96.72  E-value=0.038  Score=46.59  Aligned_cols=128  Identities=7%  Similarity=0.097  Sum_probs=67.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      +..++||||+-+...   .....++.+.-.+..+ .+++.+.. ++.....+.      ....+.+.|.+.|+||+|+..
T Consensus        53 ~l~l~DtpG~~~~~~---~~~~~l~~~~~~~~d~-~l~v~~~~-~~~~d~~~~------~~l~~~~~~~ilV~nK~D~~~  121 (197)
T cd04104          53 NVTLWDLPGIGSTAF---PPDDYLEEMKFSEYDF-FIIISSTR-FSSNDVKLA------KAIQCMGKKFYFVRTKVDRDL  121 (197)
T ss_pred             CceEEeCCCCCcccC---CHHHHHHHhCccCcCE-EEEEeCCC-CCHHHHHHH------HHHHHhCCCEEEEEecccchh
Confidence            578999999776432   2333344432123333 44444444 333333222      222335889999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccC--cccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRK--ESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d--~~~i~~L~~~Id~~~~  217 (236)
                      .......-.....+.           ....+.+.+.+.+...+.  -.++++|+.+  +.++.+|...|-..+.
T Consensus       122 ~~~~~~~~~~~~~~~-----------~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~  184 (197)
T cd04104         122 SNEQRSKPRSFNREQ-----------VLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP  184 (197)
T ss_pred             hhhhccccccccHHH-----------HHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence            431111000000111           122333344444544443  5889999984  5788888887766553

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN03108 Rab family protein; Provisional

Probab=96.70  E-value=0.03  Score=47.67  Aligned_cols=107  Identities=13%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-++|||||..+..       +....- .+.. ++|+++|+..   +..|-.  .++-.+.....-.+|.+.|.||+||.
T Consensus        57 l~l~Dt~G~~~~~~-------~~~~~~-~~ad-~~vlv~D~~~---~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~  124 (210)
T PLN03108         57 LQIWDTAGQESFRS-------ITRSYY-RGAA-GALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (210)
T ss_pred             EEEEeCCCcHHHHH-------HHHHHh-ccCC-EEEEEEECCc---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence            45889999854211       111111 2333 5788889753   333322  23222222222378999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.. .+    .  .+         .   -.       ++..+++ +.++++|+++++++.+++..+-+
T Consensus       125 ~~~-~~----~--~~---------~---~~-------~~~~~~~-~~~~e~Sa~~~~~v~e~f~~l~~  165 (210)
T PLN03108        125 HRR-AV----S--TE---------E---GE-------QFAKEHG-LIFMEASAKTAQNVEEAFIKTAA  165 (210)
T ss_pred             ccc-CC----C--HH---------H---HH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence            532 11    0  00         0   00       1122344 47999999999999997755543

>cd01859 MJ1464 MJ1464

Probab=96.65  E-value=0.015  Score=46.86  Aligned_cols=93  Identities=12%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584           88 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE  166 (236)
Q Consensus        88 ~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~  166 (236)
                      +++++++.+ +.. ++++++|+..- ......+...      ....+.|.+.|+||+|+.+.. ....            
T Consensus         3 ~~~~~~i~~-~aD-~vl~V~D~~~~~~~~~~~l~~~------~~~~~~p~iiv~NK~Dl~~~~-~~~~------------   61 (156)
T cd01859           3 KRLVRRIIK-ESD-VVLEVLDARDPELTRSRKLERY------VLELGKKLLIVLNKADLVPKE-VLEK------------   61 (156)
T ss_pred             HHHHHHHHh-hCC-EEEEEeeCCCCcccCCHHHHHH------HHhCCCcEEEEEEhHHhCCHH-HHHH------------
Confidence            344555533 344 58899998542 2222222111      123589999999999996432 1110            


Q ss_pred             hhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          167 LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       167 l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                              +..       +.+..+ ..++++|+.++++++.|...+.+.+.
T Consensus        62 --------~~~-------~~~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          62 --------WKS-------IKESEG-IPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             --------HHH-------HHHhCC-CcEEEEEccccccHHHHHHHHHHHHh
Confidence                    000       011112 46789999999999999999987654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG2229 Predicted GTPase [General function prediction only]

Probab=96.61  E-value=0.037  Score=47.15  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-=||+||||.=       .+.+.+-+.+ + ..-+|+|+|+..-.+- ...+-..+.     .+-.+|.+.+.||.||-
T Consensus        69 ~v~LfgtPGq~R-------F~fm~~~l~~-g-a~gaivlVDss~~~~~~a~~ii~f~~-----~~~~ip~vVa~NK~DL~  134 (187)
T COG2229          69 GVHLFGTPGQER-------FKFMWEILSR-G-AVGAIVLVDSSRPITFHAEEIIDFLT-----SRNPIPVVVAINKQDLF  134 (187)
T ss_pred             eEEEecCCCcHH-------HHHHHHHHhC-C-cceEEEEEecCCCcchHHHHHHHHHh-----hccCCCEEEEeeccccC
Confidence            347999999854       2344444533 3 3568899998654443 122211111     11129999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      ...         .++            ++++       ++..- --+..++.++.++++..+.+..+....+|+.
T Consensus       135 ~a~---------ppe------------~i~e-------~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~~  181 (187)
T COG2229         135 DAL---------PPE------------KIRE-------ALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLGS  181 (187)
T ss_pred             CCC---------CHH------------HHHH-------HHHhccCCCceeeeecccchhHHHHHHHHHhhcccCc
Confidence            532         111            1111       11111 1288999999999999999998888766653

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=96.61  E-value=0.045  Score=46.70  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.|||||-+ |..   ++.  ..+  .+.. ++++++|+..   +..|-+  .++--+-- ..-++|.+.|.||+||.
T Consensus        46 l~iwDt~G~e~-~~~---l~~--~~~--~~ad-~~ilV~D~t~---~~S~~~i~~w~~~i~~-~~~~~piilvgNK~Dl~  112 (200)
T smart00176       46 FNVWDTAGQEK-FGG---LRD--GYY--IQGQ-CAIIMFDVTA---RVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVK  112 (200)
T ss_pred             EEEEECCCchh-hhh---hhH--HHh--cCCC-EEEEEEECCC---hHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccc
Confidence            45889999955 321   111  122  2333 5678888654   344432  22221211 12479999999999984


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.  .    .  .+             ..+    ++   ... -..|+..|++++++|..++..+-+.+
T Consensus       113 ~~~--v----~--~~-------------~~~----~~---~~~-~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176      113 DRK--V----K--AK-------------SIT----FH---RKK-NLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             ccc--C----C--HH-------------HHH----HH---HHc-CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            321  0    0  00             001    11   112 26799999999999999999998755

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.61  E-value=0.022  Score=53.34  Aligned_cols=115  Identities=16%  Similarity=0.322  Sum_probs=76.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ++-++||||      |...+|.|+-.-+-  +.+ .+.++|++.-..+..-=  +|   .+=-.+--..|.|+||+|++.
T Consensus        71 q~tlvDCPG------HasLIRtiiggaqi--iDl-m~lviDv~kG~QtQtAE--cL---iig~~~c~klvvvinkid~lp  136 (522)
T KOG0461|consen   71 QFTLVDCPG------HASLIRTIIGGAQI--IDL-MILVIDVQKGKQTQTAE--CL---IIGELLCKKLVVVINKIDVLP  136 (522)
T ss_pred             eeEEEeCCC------cHHHHHHHHhhhhe--eee-eeEEEehhcccccccch--hh---hhhhhhccceEEEEecccccc
Confidence            689999999      66667777666532  333 66788986644333211  11   111113345678899999986


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC---eeEEEeeccCc----ccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM---VSFMPLDLRKE----SSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l---v~f~pls~~d~----~~i~~L~~~Id~~~  216 (236)
                      ...                    ..++..++.+++..-++..++   ..++|+|+.++    +++.+|...+...+
T Consensus       137 E~q--------------------r~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  137 ENQ--------------------RASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             chh--------------------hhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            531                    123556667777777777765   78999999999    89999988887754

>cd04131 Rnd Rnd subfamily

Probab=96.57  E-value=0.023  Score=47.25  Aligned_cols=119  Identities=10%  Similarity=0.112  Sum_probs=66.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH---HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is---~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .-|.|||||-+ |..   ++.    +.-.+.. +++++.|.   +++.+|-+   .++-.+... .-..|.|.|-||+||
T Consensus        51 l~iwDt~G~~~-~~~---~~~----~~~~~a~-~~ilvfdi---t~~~Sf~~~~~~w~~~i~~~-~~~~~iilVgnK~DL  117 (178)
T cd04131          51 LSLWDTSGSPY-YDN---VRP----LCYPDSD-AVLICFDI---SRPETLDSVLKKWRGEIQEF-CPNTKVLLVGCKTDL  117 (178)
T ss_pred             EEEEECCCchh-hhh---cch----hhcCCCC-EEEEEEEC---CChhhHHHHHHHHHHHHHHH-CCCCCEEEEEEChhh
Confidence            46889999844 211   111    1112344 57788886   45666543   233222222 247899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~~  215 (236)
                      ....+....+-.         ... ...      .+...++...++...|+-.|++++++ +++++..+=++
T Consensus       118 ~~~~~~~~~~~~---------~~~~~v~------~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         118 RTDLSTLMELSH---------QRQAPVS------YEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             hcChhHHHHHHh---------cCCCCCC------HHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence            543211111000         000 000      01122344567767899999999995 99999887663

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=96.54  E-value=0.026  Score=47.27  Aligned_cols=120  Identities=9%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .-|.||+||-+ |.   .+    ..+.-.+.. +++++.|.   +++.+|-+.   ++-.+.. ..-+.|.|.|.||+||
T Consensus        55 l~iwDtaG~e~-~~---~~----~~~~~~~ad-~~ilvyDi---t~~~Sf~~~~~~w~~~i~~-~~~~~piilVgNK~DL  121 (182)
T cd04172          55 LSLWDTSGSPY-YD---NV----RPLSYPDSD-AVLICFDI---SRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDL  121 (182)
T ss_pred             EEEEECCCchh-hH---hh----hhhhcCCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHH-HCCCCCEEEEeEChhh
Confidence            56889999844 21   11    112112344 57788884   566666442   2222222 2237899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~~  215 (236)
                      -.....+.....        .-...-.      .+...++...++...|+-.|++++++ |++++..+-++
T Consensus       122 ~~~~~~~~~~~~--------~~~~~v~------~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         122 RTDLTTLVELSN--------HRQTPVS------YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             hcChhhHHHHHh--------cCCCCCC------HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            543211111000        0000000      01122444567777999999999998 99999887663

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.54  E-value=0.012  Score=52.99  Aligned_cols=91  Identities=18%  Similarity=0.372  Sum_probs=54.3

Q ss_pred             HHHHHHHHhhCCCceEEEEeecCCCccc-hhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHH
Q 026584           87 LRNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLS  165 (236)
Q Consensus        87 ~~~iv~~L~~~~~~~~~V~LiD~~~~~d-p~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~  165 (236)
                      .+.+-+.+++.  . ++++++|+..-.. -...+..       ... +.|.+.|+||+||.+.. ....|.+        
T Consensus        15 ~~~l~~~l~~a--D-vIL~VvDar~p~~~~~~~l~~-------~~~-~kp~iiVlNK~DL~~~~-~~~~~~~--------   74 (287)
T PRK09563         15 RREIKENLKLV--D-VVIEVLDARIPLSSENPMIDK-------IIG-NKPRLLILNKSDLADPE-VTKKWIE--------   74 (287)
T ss_pred             HHHHHHHhhhC--C-EEEEEEECCCCCCCCChhHHH-------HhC-CCCEEEEEEchhcCCHH-HHHHHHH--------
Confidence            34444445333  3 5899999954322 2222211       112 78999999999996432 2222111        


Q ss_pred             HhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          166 ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       166 ~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                              .+           +..+ ..++++|+.++.++..|...+.+.+.
T Consensus        75 --------~~-----------~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         75 --------YF-----------EEQG-IKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             --------HH-----------HHcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence                    01           1111 45789999999999999998877653

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=96.53  E-value=0.025  Score=49.20  Aligned_cols=121  Identities=13%  Similarity=0.067  Sum_probs=67.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.|||||-++...+        .+.-.+.. ++++++|.   +++..|=+.  ......-...-+.|.|.|.||+||.
T Consensus        51 L~iwDt~G~e~~~~l~--------~~~~~~~d-~illvfdi---s~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~  118 (222)
T cd04173          51 LNMWDTSGSSYYDNVR--------PLAYPDSD-AVLICFDI---SRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR  118 (222)
T ss_pred             EEEEeCCCcHHHHHHh--------HHhccCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence            4578999996533211        11112444 57888884   455555333  1222222223479999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~  215 (236)
                      .....+...-+..        ..+-   -   .+.-.++...++...|+-.|+.+++ +|.+++..+-++
T Consensus       119 ~~~~~~~~~~~~~--------~~pI---s---~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         119 TDLATLRELSKQR--------LIPV---T---HEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             cchhhhhhhhhcc--------CCcc---C---HHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence            5331111100000        0000   0   0111233456677799999999888 599999888774

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>COG2262 HflX GTPases [General function prediction only]

Probab=96.42  E-value=0.038  Score=52.33  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=71.1

Q ss_pred             CCEEEEeCCCceeeeeccc--hHHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVP--VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~--~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      ..-++=||=|-|   .+-+  .+..+=..|.. .... +.++++|++.= +...-+....--+.-+--.+.|+|.|+||+
T Consensus       240 ~~vlLtDTVGFI---~~LP~~LV~AFksTLEE~~~aD-lllhVVDaSdp-~~~~~~~~v~~vL~el~~~~~p~i~v~NKi  314 (411)
T COG2262         240 RKVLLTDTVGFI---RDLPHPLVEAFKSTLEEVKEAD-LLLHVVDASDP-EILEKLEAVEDVLAEIGADEIPIILVLNKI  314 (411)
T ss_pred             ceEEEecCccCc---ccCChHHHHHHHHHHHHhhcCC-EEEEEeecCCh-hHHHHHHHHHHHHHHcCCCCCCEEEEEecc
Confidence            357888999932   2222  23333334432 3444 58999997543 333333333322333323578999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |++.+. ...                              ..+....- ..+++|+.++++++.|...|.+.+..
T Consensus       315 D~~~~~-~~~------------------------------~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         315 DLLEDE-EIL------------------------------AELERGSP-NPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             cccCch-hhh------------------------------hhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            998665 100                              11222222 68999999999999999999998774

>PRK13351 elongation factor G; Reviewed

Probab=96.41  E-value=0.078  Score=53.32  Aligned_cols=67  Identities=19%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||.++.      ......++.  .. ++++++|+..-.....   .-+  +....+.++|++.|+||+|+..
T Consensus        74 ~i~liDtPG~~df~------~~~~~~l~~--aD-~~ilVvd~~~~~~~~~---~~~--~~~~~~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         74 RINLIDTPGHIDFT------GEVERSLRV--LD-GAVVVFDAVTGVQPQT---ETV--WRQADRYGIPRLIFINKMDRVG  139 (687)
T ss_pred             EEEEEECCCcHHHH------HHHHHHHHh--CC-EEEEEEeCCCCCCHHH---HHH--HHHHHhcCCCEEEEEECCCCCC
Confidence            57899999987622      122333432  23 4788899865322221   111  1223456899999999999986


Q ss_pred             c
Q 026584          148 N  148 (236)
Q Consensus       148 ~  148 (236)
                      .
T Consensus       140 ~  140 (687)
T PRK13351        140 A  140 (687)
T ss_pred             C
Confidence            4

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=96.28  E-value=0.063  Score=46.12  Aligned_cols=107  Identities=11%  Similarity=0.195  Sum_probs=61.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-|.|||||-...       .+....- .+.. ++|+++|...   +..|-.  .++-.+... .-+.|.+.|.||+|+
T Consensus        63 ~l~i~Dt~G~~~~~-------~~~~~~~-~~~~-~~ilvfD~~~---~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl  129 (219)
T PLN03071         63 RFYCWDTAGQEKFG-------GLRDGYY-IHGQ-CAIIMFDVTA---RLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV  129 (219)
T ss_pred             EEEEEECCCchhhh-------hhhHHHc-cccc-EEEEEEeCCC---HHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhh
Confidence            46789999985521       1111121 1233 5788888653   444332  232222222 247999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ..+.  .    .  .+.    +         +       +.... -..|+..|++++.++.+++..+-+.+
T Consensus       130 ~~~~--v----~--~~~----~---------~-------~~~~~-~~~~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        130 KNRQ--V----K--AKQ----V---------T-------FHRKK-NLQYYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             hhcc--C----C--HHH----H---------H-------HHHhc-CCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            4321  0    0  000    0         1       11122 26789999999999999997776544

>cd01850 CDC_Septin CDC/Septin

Probab=96.27  E-value=0.047  Score=49.00  Aligned_cols=76  Identities=13%  Similarity=0.217  Sum_probs=41.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHh--------------h-C---CCc-eEEEEeecCCC-ccchhhHHHHHHHHHH
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLK--------------S-R---NFN-VCAVYLLDSQF-ITDVTKFISGCMASLS  127 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~--------------~-~---~~~-~~~V~LiD~~~-~~dp~~~is~~l~sls  127 (236)
                      ++.++||||.=+-.........|++++.              + .   +.+ -+++|++++.. -..+.+.-  +   +.
T Consensus        64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~--~---lk  138 (276)
T cd01850          64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE--F---MK  138 (276)
T ss_pred             EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH--H---HH
Confidence            4799999996554333344444443221              0 0   111 35788887653 22232211  1   11


Q ss_pred             HHhhcCCCEEEEecccccccch
Q 026584          128 AMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus       128 ~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      .+ +-+.|+|.|+||+|++...
T Consensus       139 ~l-~~~v~vi~VinK~D~l~~~  159 (276)
T cd01850         139 RL-SKRVNIIPVIAKADTLTPE  159 (276)
T ss_pred             HH-hccCCEEEEEECCCcCCHH
Confidence            11 2279999999999998644

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01873 RhoBTB RhoBTB subfamily

Probab=96.26  E-value=0.042  Score=46.50  Aligned_cols=123  Identities=10%  Similarity=0.109  Sum_probs=63.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..-|.||+||-+ +     ++    .+.-.+.. +++++.|.   +++.+|-..   ++--+... .-+.|.|.|.||+|
T Consensus        67 ~l~iwDTaG~~~-~-----~~----~~~~~~ad-~iilv~d~---t~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~D  131 (195)
T cd01873          67 SLRLWDTFGDHD-K-----DR----RFAYGRSD-VVLLCFSI---ASPNSLRNVKTMWYPEIRHF-CPRVPVILVGCKLD  131 (195)
T ss_pred             EEEEEeCCCChh-h-----hh----cccCCCCC-EEEEEEEC---CChhHHHHHHHHHHHHHHHh-CCCCCEEEEEEchh
Confidence            457899999954 1     11    12112333 46777785   455555432   22222211 13789999999999


Q ss_pred             cccchh-HhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      |..... .......+    +........ ..-.   +...++..+++. .|+-.|+++++++++++..+-+
T Consensus       132 L~~~~~~~~~~~~~~----~~~~~~~~~-~V~~---~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         132 LRYADLDEVNRARRP----LARPIKNAD-ILPP---ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             ccccccchhhhcccc----cccccccCC-ccCH---HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence            954210 00000000    000000000 0000   011123345565 8999999999999999988754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.23  E-value=0.031  Score=44.47  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh--cCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~--l~lP~InVlsK~DLl  146 (236)
                      .-|+|+|||-+...    .+   ... -.+.. +++++.|.   .++++|-...-+.-.+.-.  -..|.+.|-||+|+.
T Consensus        50 l~i~D~~g~~~~~~----~~---~~~-~~~~~-~~ii~fd~---~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~  117 (162)
T PF00071_consen   50 LEIWDTSGQERFDS----LR---DIF-YRNSD-AIIIVFDV---TDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS  117 (162)
T ss_dssp             EEEEEETTSGGGHH----HH---HHH-HTTES-EEEEEEET---TBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred             cccccccccccccc----cc---ccc-ccccc-cccccccc---cccccccccccccccccccccccccceeeecccccc
Confidence            46789999753221    11   122 12233 45666674   4555554443333222322  258999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ... ++.      .                   +...++..+++ ..|+-+|++++.++.+++..+=+.
T Consensus       118 ~~~-~v~------~-------------------~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen  118 DER-EVS------V-------------------EEAQEFAKELG-VPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             GGS-SSC------H-------------------HHHHHHHHHTT-SEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ccc-cch------h-------------------hHHHHHHHHhC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence            422 110      0                   01113345677 999999999999999998877554

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=96.17  E-value=0.033  Score=53.48  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=86.7

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcccC----------CCCEEEEeCCCceeeeeccchHHHH-HHHH-hh-CCCceEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDNYL----------DDDYLVFDCPGQIELFTHVPVLRNF-VDHL-KS-RNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~~~----------~~~Yil~D~PGQiElf~~~~~~~~i-v~~L-~~-~~~~~~~V  104 (236)
                      ||.|...-+|.|...=..+..+..+...          .-..-|+||-|.-|   +.+.+-++ +++- +. .... .++
T Consensus       226 PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe---t~d~VE~iGIeRs~~~i~~AD-lvL  301 (454)
T COG0486         226 PNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE---TDDVVERIGIERAKKAIEEAD-LVL  301 (454)
T ss_pred             CCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc---CccHHHHHHHHHHHHHHHhCC-EEE
Confidence            9999999999988532133332222210          11468999999554   44444332 2222 11 2344 489


Q ss_pred             EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      |++|+..-.+..+...     +. ..+-+.|++.|+||+||.+.. ....                              
T Consensus       302 ~v~D~~~~~~~~d~~~-----~~-~~~~~~~~i~v~NK~DL~~~~-~~~~------------------------------  344 (454)
T COG0486         302 FVLDASQPLDKEDLAL-----IE-LLPKKKPIIVVLNKADLVSKI-ELES------------------------------  344 (454)
T ss_pred             EEEeCCCCCchhhHHH-----HH-hcccCCCEEEEEechhccccc-ccch------------------------------
Confidence            9999987422222221     11 456689999999999998754 1110                              


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      + +-..-..++++|++++++++.|..+|.+.++..
T Consensus       345 ~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         345 E-KLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             h-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            0 011113689999999999999999999988877

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.032  Score=53.22  Aligned_cols=105  Identities=16%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCC---CccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ---FITDVTKFISGCMASLSAMVQLELPH-VNILSKMD  144 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~---~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D  144 (236)
                      --++|.||      |-+-++.++..+  .++. ++++++|+.   ...+-..        +.+.-.|+.++ +.|+||+|
T Consensus        52 ~~fIDvpg------h~~~i~~miag~--~~~d-~alLvV~~deGl~~qtgEh--------L~iLdllgi~~giivltk~D  114 (447)
T COG3276          52 MGFIDVPG------HPDFISNLLAGL--GGID-YALLVVAADEGLMAQTGEH--------LLILDLLGIKNGIIVLTKAD  114 (447)
T ss_pred             eEEeeCCC------cHHHHHHHHhhh--cCCc-eEEEEEeCccCcchhhHHH--------HHHHHhcCCCceEEEEeccc
Confidence            47899999      444455555554  2344 688889883   3333333        44566689999 88899999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ..... .++.                          .+-+++.+.++  .+.++.|++.+++|++|-..|-+...
T Consensus       115 ~~d~~-r~e~--------------------------~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         115 RVDEA-RIEQ--------------------------KIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             cccHH-HHHH--------------------------HHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            97543 1211                          11122222223  67799999999999999999888765

>PRK12289 GTPase RsgA; Reviewed

Probab=96.08  E-value=0.031  Score=52.10  Aligned_cols=111  Identities=17%  Similarity=0.190  Sum_probs=62.9

Q ss_pred             CCEEEEeCC------CceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEE
Q 026584           67 DDYLVFDCP------GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNI  139 (236)
Q Consensus        67 ~~Yil~D~P------GQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InV  139 (236)
                      .++|.++.+      |.|+=-..|.+   .+.+-.-.+.. ++++++|+.--. ++ ..+.-+|...   ...++|.|.|
T Consensus        55 GD~V~~~~~~~~~~~~~I~~vlpR~~---~L~R~~~aNvD-~vLlV~d~~~p~~~~-~~LdR~L~~a---~~~~ip~ILV  126 (352)
T PRK12289         55 GDRVIVEEPDWQGQRGAIAEVLPRKT---ELDRPPVANAD-QILLVFALAEPPLDP-WQLSRFLVKA---ESTGLEIVLC  126 (352)
T ss_pred             CCEEEEeecCCCCCceEEEEEecccc---ceechhhhcCC-EEEEEEECCCCCCCH-HHHHHHHHHH---HHCCCCEEEE
Confidence            578988854      33432222221   11111113454 477888865321 22 2334443322   3468999999


Q ss_pred             ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +||+||++.. +...|.                           +.+...+ +.++++|+.++++++.|+..+..
T Consensus       127 lNK~DLv~~~-~~~~~~---------------------------~~~~~~g-~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        127 LNKADLVSPT-EQQQWQ---------------------------DRLQQWG-YQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEchhcCChH-HHHHHH---------------------------HHHHhcC-CeEEEEEcCCCCCHHHHhhhhcc
Confidence            9999997543 221111                           1112233 36899999999999999988764

>cd01899 Ygr210 Ygr210 subfamily

Probab=96.04  E-value=0.11  Score=47.68  Aligned_cols=38  Identities=13%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             cCCeeEEEeeccCcccHHHHHH-HHHHhhcccccCCCCC
Q 026584          189 YSMVSFMPLDLRKESSIRYVLS-QIDNCIQWGEDADLKI  226 (236)
Q Consensus       189 ~~lv~f~pls~~d~~~i~~L~~-~Id~~~~y~ed~~~~~  226 (236)
                      +.....+|+|+..+.++.+|.. .+-+.++.++..+...
T Consensus       240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~  278 (318)
T cd01899         240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD  278 (318)
T ss_pred             CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence            3446799999999999999997 5888888886666543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=95.99  E-value=0.02  Score=53.42  Aligned_cols=77  Identities=22%  Similarity=0.436  Sum_probs=57.3

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE-ecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI-LSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV-lsK~D  144 (236)
                      ..+|-=+||||      |.+.+++++.--.+.+.-..+|--.|...=......+      |+  -..+++||.| +||.|
T Consensus       116 ~RhYaH~DCPG------HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL------LA--rQVGV~~ivvfiNKvD  181 (449)
T KOG0460|consen  116 KRHYAHTDCPG------HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL------LA--RQVGVKHIVVFINKVD  181 (449)
T ss_pred             ccccccCCCCc------hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH------HH--HHcCCceEEEEEeccc
Confidence            46899999999      8889999887776666656677777887766777655      22  3468999999 79999


Q ss_pred             cccchhHhhhhcc
Q 026584          145 LVTNKKEIEDYLN  157 (236)
Q Consensus       145 Ll~~~~~l~~~l~  157 (236)
                      ++.+. ++.++.+
T Consensus       182 ~V~d~-e~leLVE  193 (449)
T KOG0460|consen  182 LVDDP-EMLELVE  193 (449)
T ss_pred             ccCCH-HHHHHHH
Confidence            99766 4544433

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=95.95  E-value=0.019  Score=55.86  Aligned_cols=76  Identities=17%  Similarity=0.319  Sum_probs=50.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHh--h-CCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLK--S-RNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~--~-~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      |-++||||   +--|-..-+++++...  . ...+.+++|++|-+-.  ..++.-+.. +-++--.+ -+-|.|.|+|||
T Consensus       217 wQViDTPG---ILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkL-fhsIKpLF-aNK~~IlvlNK~  291 (620)
T KOG1490|consen  217 WQVIDTPG---ILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKL-YHSIKPLF-ANKVTILVLNKI  291 (620)
T ss_pred             eeecCCcc---ccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHH-HHHhHHHh-cCCceEEEeecc
Confidence            68999999   7767666777776653  1 3677899999997432  233332221 11111111 388999999999


Q ss_pred             ccccch
Q 026584          144 DLVTNK  149 (236)
Q Consensus       144 DLl~~~  149 (236)
                      |++..+
T Consensus       292 D~m~~e  297 (620)
T KOG1490|consen  292 DAMRPE  297 (620)
T ss_pred             cccCcc
Confidence            999765

>cd01855 YqeH YqeH

Probab=95.94  E-value=0.068  Score=44.54  Aligned_cols=87  Identities=10%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      ++++++|+......  .... +   . ....+.|.+.|+||+|+++.. ....       .    +.     .+.   ++
T Consensus        37 ~il~VvD~~~~~~~--~~~~-l---~-~~~~~~~~ilV~NK~Dl~~~~-~~~~-------~----~~-----~~~---~~   89 (190)
T cd01855          37 LVVHVVDIFDFPGS--LIPR-L---R-LFGGNNPVILVGNKIDLLPKD-KNLV-------R----IK-----NWL---RA   89 (190)
T ss_pred             EEEEEEECccCCCc--cchh-H---H-HhcCCCcEEEEEEchhcCCCC-CCHH-------H----HH-----HHH---HH
Confidence            68999998643211  1111 1   1 112478999999999997543 1000       0    00     000   00


Q ss_pred             HHHHhhc--cCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          182 LIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       182 l~~li~d--~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .  ....  +....++++|+.++++++.|+..|.+.+.
T Consensus        90 ~--~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          90 K--AAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             H--HHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            0  0011  22246899999999999999999988653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.90  E-value=0.019  Score=43.75  Aligned_cols=67  Identities=16%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             CCEEEEeCCCceeeeeccc---hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           67 DDYLVFDCPGQIELFTHVP---VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~---~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      ..+.++||||-.+--....   ..+++.+.+  ...+ +++|++|+....  ..-...++    -.++-+.|.+.|+||
T Consensus        47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d-~ii~vv~~~~~~--~~~~~~~~----~~l~~~~~~i~v~NK  116 (116)
T PF01926_consen   47 KKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSD-LIIYVVDASNPI--TEDDKNIL----RELKNKKPIILVLNK  116 (116)
T ss_dssp             EEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTES-EEEEEEETTSHS--HHHHHHHH----HHHHTTSEEEEEEES
T ss_pred             eeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCC-EEEEEEECCCCC--CHHHHHHH----HHHhcCCCEEEEEcC
Confidence            3579999999333211111   233344444  2344 589999976621  11111111    122578999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04103 Centaurin_gamma Centaurin gamma

Probab=95.86  E-value=0.14  Score=41.55  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~DL  145 (236)
                      .-|.||+||-.        ..   .. + +.. +++++.|..   ++..|-.  .++--+....+ -++|.+.|-||+||
T Consensus        49 l~i~D~~g~~~--------~~---~~-~-~~~-~~ilv~d~~---~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  111 (158)
T cd04103          49 LLIRDEGGAPD--------AQ---FA-S-WVD-AVIFVFSLE---NEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI  111 (158)
T ss_pred             EEEEECCCCCc--------hh---HH-h-cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence            46789999832        11   12 2 223 577788854   4444443  23222322222 36899999999998


Q ss_pred             ccch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .... ..+    .                  .+..+++   ....+-..|+..|++++.+|++++..+-+
T Consensus       112 ~~~~~~~v----~------------------~~~~~~~---~~~~~~~~~~e~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         112 SESNPRVI----D------------------DARARQL---CADMKRCSYYETCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             hhcCCccc----C------------------HHHHHHH---HHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence            4211 000    0                  0011112   22344468999999999999999988754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK00098 GTPase RsgA; Reviewed

Probab=95.81  E-value=0.065  Score=48.52  Aligned_cols=85  Identities=14%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHH
Q 026584           97 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA  176 (236)
Q Consensus        97 ~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~  176 (236)
                      .+.. ++++++|+..-..-...+--++..+   -..+.|.+.|+||+||.........                      
T Consensus        79 aniD-~vllV~d~~~p~~~~~~idr~L~~~---~~~~ip~iIVlNK~DL~~~~~~~~~----------------------  132 (298)
T PRK00098         79 ANVD-QAVLVFAAKEPDFSTDLLDRFLVLA---EANGIKPIIVLNKIDLLDDLEEARE----------------------  132 (298)
T ss_pred             ecCC-EEEEEEECCCCCCCHHHHHHHHHHH---HHCCCCEEEEEEhHHcCCCHHHHHH----------------------
Confidence            3455 4677888742211122233333222   2468999999999999633211110                      


Q ss_pred             HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                           ..+.....+ ..++++|+.++++++.|...+-
T Consensus       133 -----~~~~~~~~g-~~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        133 -----LLALYRAIG-YDVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             -----HHHHHHHCC-CeEEEEeCCCCccHHHHHhhcc
Confidence                 001122233 4789999999999999988774

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.79  E-value=0.16  Score=41.95  Aligned_cols=113  Identities=17%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl  146 (236)
                      .+-++|.+||-.+.   +..+..   ++  +.+ .+||++|+.-... -.-....|..+.... .-+.|.+.++||+|+-
T Consensus        59 ~~~~~d~gG~~~~~---~~w~~y---~~--~~~-~iIfVvDssd~~~-l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~  128 (175)
T PF00025_consen   59 SLTIWDLGGQESFR---PLWKSY---FQ--NAD-GIIFVVDSSDPER-LQEAKEELKELLNDPELKDIPILILANKQDLP  128 (175)
T ss_dssp             EEEEEEESSSGGGG---GGGGGG---HT--TES-EEEEEEETTGGGG-HHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred             EEEEEecccccccc---ccceee---cc--ccc-eeEEEEeccccee-ecccccchhhhcchhhcccceEEEEecccccc
Confidence            57899999986532   222211   21  333 5899999874321 111112222222221 1379999999999986


Q ss_pred             cch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ...  .++...+.         +.               + +..-.-+.+++.|+.+++++.+.+..+-+.
T Consensus       129 ~~~~~~~i~~~l~---------l~---------------~-l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  129 DAMSEEEIKEYLG---------LE---------------K-LKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             TSSTHHHHHHHTT---------GG---------------G-TTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             CcchhhHHHhhhh---------hh---------------h-cccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence            432  11221111         00               0 112223789999999999999999887653

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=95.79  E-value=0.13  Score=47.53  Aligned_cols=145  Identities=17%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             ChHHHHHHHHHHHH---hhHHHH----HHHhcc--cC-CCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceEEEEe
Q 026584           38 PNGGLIYCMEHLED---NLDDWL----AEELDN--YL-DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYL  106 (236)
Q Consensus        38 PNGalv~~me~l~~---n~~~wl----~~~i~~--~~-~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~~V~L  106 (236)
                      ||.|..+-++.+..   ++-+|=    .-+|..  +. ..++-+-|.||-||== ..+--+.++++.+.+.  + ..+|+
T Consensus       205 PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~--~-~l~fV  281 (366)
T KOG1489|consen  205 PNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC--K-GLLFV  281 (366)
T ss_pred             CCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh--c-eEEEE
Confidence            99999998888863   222331    111221  10 1247899999988833 4455578898888653  2 47999


Q ss_pred             ecCCCc--cchhhHHHHHHHHHHHHhh--cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584          107 LDSQFI--TDVTKFISGCMASLSAMVQ--LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL  182 (236)
Q Consensus       107 iD~~~~--~dp~~~is~~l~sls~m~~--l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l  182 (236)
                      +|.+..  .+|-.-+-.+..-+-..-.  -.-|++.|.||+|+...+..+   +    ++|...+.              
T Consensus       282 vD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l----~~L~~~lq--------------  340 (366)
T KOG1489|consen  282 VDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---L----SSLAKRLQ--------------  340 (366)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---H----HHHHHHcC--------------
Confidence            998765  3555545433333322211  367999999999995322111   0    11111111              


Q ss_pred             HHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                              -...+|+|++.+++++.|+..+-+
T Consensus       341 --------~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  341 --------NPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             --------CCcEEEeeeccccchHHHHHHHhh
Confidence                    127999999999999999987754

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=95.76  E-value=0.34  Score=47.55  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=41.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.++||||+..+ .     ......+..  .. ++|+++|+..--.+.   ..-+  +....+.++|.+.++||+|+.
T Consensus        79 ~~inliDTPG~~df-~-----~~~~~~l~~--aD-~aIlVvDa~~gv~~~---t~~l--~~~~~~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         79 CLINLLDTPGHEDF-S-----EDTYRTLTA--VD-SALMVIDAAKGVEPQ---TRKL--MEVCRLRDTPIFTFINKLDRD  144 (526)
T ss_pred             EEEEEEECCCchhh-H-----HHHHHHHHH--CC-EEEEEEecCCCCCHH---HHHH--HHHHHhcCCCEEEEEECCccc
Confidence            35799999997652 1     223344533  33 588899986422221   1111  223344699999999999987


Q ss_pred             c
Q 026584          147 T  147 (236)
Q Consensus       147 ~  147 (236)
                      .
T Consensus       145 ~  145 (526)
T PRK00741        145 G  145 (526)
T ss_pred             c
Confidence            5

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=95.71  E-value=0.072  Score=49.58  Aligned_cols=97  Identities=19%  Similarity=0.264  Sum_probs=56.1

Q ss_pred             HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584           87 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE  166 (236)
Q Consensus        87 ~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~  166 (236)
                      .++++..+.+ + .-++++++|+.-  -+..+...+.-    ..+ +.|.+.|+||+||+.+....+        .    
T Consensus        53 f~~~l~~~~~-~-~~~Il~VvD~~d--~~~s~~~~l~~----~~~-~~piilV~NK~DLl~k~~~~~--------~----  111 (360)
T TIGR03597        53 FLNLLNSLGD-S-NALIVYVVDIFD--FEGSLIPELKR----FVG-GNPVLLVGNKIDLLPKSVNLS--------K----  111 (360)
T ss_pred             HHHHHhhccc-C-CcEEEEEEECcC--CCCCccHHHHH----HhC-CCCEEEEEEchhhCCCCCCHH--------H----
Confidence            3445555422 2 236999999732  22233322211    111 789999999999985431000        0    


Q ss_pred             hhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHh
Q 026584          167 LNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       167 l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                              ..++   +.+....+++  ..++++|++++.+++.|+..|.+.
T Consensus       112 --------~~~~---l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       112 --------IKEW---MKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             --------HHHH---HHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence                    0111   1112234444  368999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>smart00053 DYNc Dynamin, GTPase

Probab=95.62  E-value=0.079  Score=46.87  Aligned_cols=76  Identities=9%  Similarity=0.143  Sum_probs=43.6

Q ss_pred             CCEEEEeCCCceeeeec-----cchHHHHHHHHh-h--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE
Q 026584           67 DDYLVFDCPGQIELFTH-----VPVLRNFVDHLK-S--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~-----~~~~~~iv~~L~-~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In  138 (236)
                      .++.++||||   ++..     .......++.+. +  .+-+.++++++|+..=-.+++-.    --.-..-+.+.|.+-
T Consensus       125 ~~ltLIDlPG---l~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~  197 (240)
T smart00053      125 LNLTLIDLPG---ITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIG  197 (240)
T ss_pred             CceEEEeCCC---ccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEE
Confidence            4799999999   4321     122333333331 1  12334689999986422222211    011223347899999


Q ss_pred             Eecccccccch
Q 026584          139 ILSKMDLVTNK  149 (236)
Q Consensus       139 VlsK~DLl~~~  149 (236)
                      |+||+|.+++.
T Consensus       198 ViTK~D~~~~~  208 (240)
T smart00053      198 VITKLDLMDEG  208 (240)
T ss_pred             EEECCCCCCcc
Confidence            99999998654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=95.61  E-value=0.083  Score=49.07  Aligned_cols=112  Identities=17%  Similarity=0.355  Sum_probs=67.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecC-CCccchhhHHHHHHHHHHHHhhcCCCEEEEe-cccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNIL-SKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~-~~~~dp~~~is~~l~sls~m~~l~lP~InVl-sK~DLl  146 (236)
                      --++|+||      |-.-|--++.--.-.+   .++.++.+ ..|-.|..  .-=|+|+-+   +++.+|.|. ||+||+
T Consensus        88 VSfVDaPG------He~LMATMLsGAAlMD---gAlLvIaANEpcPQPQT--~EHl~AleI---igik~iiIvQNKIDlV  153 (415)
T COG5257          88 VSFVDAPG------HETLMATMLSGAALMD---GALLVIAANEPCPQPQT--REHLMALEI---IGIKNIIIVQNKIDLV  153 (415)
T ss_pred             EEEeeCCc------hHHHHHHHhcchhhhc---ceEEEEecCCCCCCCch--HHHHHHHhh---hccceEEEEeccccee
Confidence            46899999      3222322322221122   35666776 34555543  222333443   688888774 999999


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +++..+++|-                        .|.+++.---  -...+|+|+.-+-+|+.|+.+|.+-+.-
T Consensus       154 ~~E~AlE~y~------------------------qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         154 SRERALENYE------------------------QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             cHHHHHHHHH------------------------HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            8774444321                        1222232222  2689999999999999999999997764

>PRK13796 GTPase YqeH; Provisional

Probab=95.53  E-value=0.12  Score=48.12  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584           87 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE  166 (236)
Q Consensus        87 ~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~  166 (236)
                      ..++++.+..  ...++++++|+.-..  .++...    +.-.. -+.|.+.|+||+||+.+....        +     
T Consensus        59 ~~~~l~~i~~--~~~lIv~VVD~~D~~--~s~~~~----L~~~~-~~kpviLViNK~DLl~~~~~~--------~-----  116 (365)
T PRK13796         59 FLKLLNGIGD--SDALVVNVVDIFDFN--GSWIPG----LHRFV-GNNPVLLVGNKADLLPKSVKK--------N-----  116 (365)
T ss_pred             HHHHHHhhcc--cCcEEEEEEECccCC--CchhHH----HHHHh-CCCCEEEEEEchhhCCCccCH--------H-----
Confidence            4556666632  234789999975422  222222    11111 278999999999997532000        0     


Q ss_pred             hhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHh
Q 026584          167 LNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       167 l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                             +..++.+   .....+++  ..++++|+.++.+++.|+..|.+.
T Consensus       117 -------~i~~~l~---~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        117 -------KVKNWLR---QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             -------HHHHHHH---HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                   0001111   11223343  368999999999999999999764

>TIGR00503 prfC peptide chain release factor 3

Probab=95.50  E-value=0.045  Score=53.64  Aligned_cols=66  Identities=14%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .++.++|||||.. |.     ....+.+..  .. ++|+++|+..-..+. ..    ++  ...-..++|.+.|+||+|+
T Consensus        80 ~~inliDTPG~~d-f~-----~~~~~~l~~--aD-~aIlVvDa~~gv~~~t~~----l~--~~~~~~~~PiivviNKiD~  144 (527)
T TIGR00503        80 CLVNLLDTPGHED-FS-----EDTYRTLTA--VD-NCLMVIDAAKGVETRTRK----LM--EVTRLRDTPIFTFMNKLDR  144 (527)
T ss_pred             eEEEEEECCChhh-HH-----HHHHHHHHh--CC-EEEEEEECCCCCCHHHHH----HH--HHHHhcCCCEEEEEECccc
Confidence            4578999999843 21     223344532  33 588999986522221 11    11  1222358999999999999


Q ss_pred             cc
Q 026584          146 VT  147 (236)
Q Consensus       146 l~  147 (236)
                      ..
T Consensus       145 ~~  146 (527)
T TIGR00503       145 DI  146 (527)
T ss_pred             cC
Confidence            64

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=95.50  E-value=0.17  Score=43.24  Aligned_cols=127  Identities=19%  Similarity=0.321  Sum_probs=71.1

Q ss_pred             CCEEEEeCCCceeeeecc----chHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTHV----PVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~----~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      ....+|||||   ++-..    ...+.|.+.+.  ..+.+ +.++++....++.-...+-..+..+=-. ..---.|.|+
T Consensus        49 ~~v~VIDTPG---l~d~~~~~~~~~~~i~~~l~~~~~g~h-a~llVi~~~r~t~~~~~~l~~l~~~FG~-~~~k~~ivvf  123 (212)
T PF04548_consen   49 RQVTVIDTPG---LFDSDGSDEEIIREIKRCLSLCSPGPH-AFLLVIPLGRFTEEDREVLELLQEIFGE-EIWKHTIVVF  123 (212)
T ss_dssp             EEEEEEE--S---SEETTEEHHHHHHHHHHHHHHTTT-ES-EEEEEEETTB-SHHHHHHHHHHHHHHCG-GGGGGEEEEE
T ss_pred             eEEEEEeCCC---CCCCcccHHHHHHHHHHHHHhccCCCe-EEEEEEecCcchHHHHHHHHHHHHHccH-HHHhHhhHHh
Confidence            3578999999   55322    23445555553  24555 5788888876665555444333222000 0111266778


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc------CcccHHHHHHHHHH
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR------KESSIRYVLSQIDN  214 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~------d~~~i~~L~~~Id~  214 (236)
                      |.+|-+... .+++|+..                  .-+.++-++++..+- +++-++.+      +...+..|+..|++
T Consensus       124 T~~d~~~~~-~~~~~l~~------------------~~~~~l~~li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~  183 (212)
T PF04548_consen  124 THADELEDD-SLEDYLKK------------------ESNEALQELIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEE  183 (212)
T ss_dssp             EEGGGGTTT-THHHHHHH------------------HHHHHHHHHHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccc-cHHHHHhc------------------cCchhHhHHhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHH
Confidence            988877655 34443331                  112345566666664 67777776      55788999999998


Q ss_pred             hhcc
Q 026584          215 CIQW  218 (236)
Q Consensus       215 ~~~y  218 (236)
                      ..+.
T Consensus       184 mv~~  187 (212)
T PF04548_consen  184 MVQE  187 (212)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1084 Predicted GTPase [General function prediction only]

Probab=95.48  E-value=0.041  Score=50.88  Aligned_cols=73  Identities=19%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             CEEEEeCCCceeeee-ccchHH----HHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           68 DYLVFDCPGQIELFT-HVPVLR----NFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        68 ~Yil~D~PGQiElf~-~~~~~~----~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .|=+|||||   |-- --..++    +-+..|+  ...-+++|++|.+-  -.....-++.+   -.+--.+..|.+.|+
T Consensus       216 R~QvIDTPG---lLDRPl~ErN~IE~qAi~AL~--hl~~~IlF~~D~Se~cgy~lE~Q~~L~---~eIk~~f~~p~v~V~  287 (346)
T COG1084         216 RIQVIDTPG---LLDRPLEERNEIERQAILALR--HLAGVILFLFDPSETCGYSLEEQISLL---EEIKELFKAPIVVVI  287 (346)
T ss_pred             eEEEecCCc---ccCCChHHhcHHHHHHHHHHH--HhcCeEEEEEcCccccCCCHHHHHHHH---HHHHHhcCCCeEEEE
Confidence            467999999   431 111122    2334443  23447999999843  23344444322   345556789999999


Q ss_pred             cccccccc
Q 026584          141 SKMDLVTN  148 (236)
Q Consensus       141 sK~DLl~~  148 (236)
                      ||+|+...
T Consensus       288 nK~D~~~~  295 (346)
T COG1084         288 NKIDIADE  295 (346)
T ss_pred             ecccccch
Confidence            99999843

>PRK01889 GTPase RsgA; Reviewed

Probab=95.20  E-value=0.14  Score=47.57  Aligned_cols=112  Identities=12%  Similarity=0.177  Sum_probs=60.9

Q ss_pred             CCEEEEeC--CCcee-eeeccchHHHH-------HHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE
Q 026584           67 DDYLVFDC--PGQIE-LFTHVPVLRNF-------VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH  136 (236)
Q Consensus        67 ~~Yil~D~--PGQiE-lf~~~~~~~~i-------v~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~  136 (236)
                      .++|++|+  ||.|+ ++--+..+.+=       .+-+ -.|... ++.++++..--++. ++--+|   ...-..++|.
T Consensus        72 GD~V~~~~~~~g~I~~i~pR~~~L~R~~~~~~~~~q~i-aANvD~-vliV~s~~p~~~~~-~ldr~L---~~a~~~~i~p  145 (356)
T PRK01889         72 GDWVLLDNEKKARIVRLLPRRSLFSRKAAGTRSEEQLI-AANVDT-VFIVCSLNHDFNLR-RIERYL---ALAWESGAEP  145 (356)
T ss_pred             CcEEEEecCCceEEEEEECCCceEEcCCCCCCccceeE-EEeCCE-EEEEEecCCCCChh-HHHHHH---HHHHHcCCCE
Confidence            57999997  88885 33322222110       0000 124443 45556653222221 333332   2233468999


Q ss_pred             EEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          137 VNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       137 InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      +.||||+||++...   ...                       ..+..+   ......+++|+.++++++.|...+.
T Consensus       146 iIVLNK~DL~~~~~---~~~-----------------------~~~~~~---~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        146 VIVLTKADLCEDAE---EKI-----------------------AEVEAL---APGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EEEEEChhcCCCHH---HHH-----------------------HHHHHh---CCCCcEEEEECCCCccHHHHHHHhh
Confidence            99999999975320   000                       001111   1125778899999999999998885

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=95.19  E-value=0.22  Score=43.89  Aligned_cols=55  Identities=11%  Similarity=0.374  Sum_probs=37.8

Q ss_pred             cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH
Q 026584          132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ  211 (236)
Q Consensus       132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~  211 (236)
                      -++|.+.|+||+||.... +...                          +..+.....+ ..++.+|+++++++++|+..
T Consensus        66 ~~i~~vIV~NK~DL~~~~-~~~~--------------------------~~~~~~~~~g-~~v~~~SAktg~gi~eLf~~  117 (245)
T TIGR00157        66 QNIEPIIVLNKIDLLDDE-DMEK--------------------------EQLDIYRNIG-YQVLMTSSKNQDGLKELIEA  117 (245)
T ss_pred             CCCCEEEEEECcccCCCH-HHHH--------------------------HHHHHHHHCC-CeEEEEecCCchhHHHHHhh
Confidence            689999999999996433 1100                          0001112333 57899999999999999988


Q ss_pred             HHH
Q 026584          212 IDN  214 (236)
Q Consensus       212 Id~  214 (236)
                      +-+
T Consensus       118 l~~  120 (245)
T TIGR00157       118 LQN  120 (245)
T ss_pred             hcC
Confidence            764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00416 elongation factor 2; Provisional

Probab=95.17  E-value=0.052  Score=55.98  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=41.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +.++||||..++      .......+...  . ++++++|+.-=-.+..--   +  +....+.++|.|.|+||+|+.
T Consensus        94 i~liDtPG~~~f------~~~~~~al~~~--D-~ailVvda~~g~~~~t~~---~--~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         94 INLIDSPGHVDF------SSEVTAALRVT--D-GALVVVDCVEGVCVQTET---V--LRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             EEEEcCCCHHhH------HHHHHHHHhcC--C-eEEEEEECCCCcCccHHH---H--HHHHHHcCCCEEEEEEChhhh
Confidence            689999997662      22344445333  3 578899986532222211   1  344455689999999999997

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=95.07  E-value=0.14  Score=40.66  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=32.5

Q ss_pred             HHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           88 RNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        88 ~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +.+.+.+++.  . ++++++|+.. ..+....+..++-.    ..-+.|.+.|+||+||..+
T Consensus         3 ~~~~~~i~~a--D-~vl~ViD~~~p~~~~~~~l~~~l~~----~~~~k~~iivlNK~DL~~~   57 (141)
T cd01857           3 RQLWRVVERS--D-IVVQIVDARNPLLFRPPDLERYVKE----VDPRKKNILLLNKADLLTE   57 (141)
T ss_pred             HHHHHHHhhC--C-EEEEEEEccCCcccCCHHHHHHHHh----ccCCCcEEEEEechhcCCH
Confidence            4455666443  3 5889999854 22233344333221    1137899999999999754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=94.89  E-value=0.47  Score=39.70  Aligned_cols=129  Identities=15%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      ..++||+||.|+-       .+...- -.+.+ +++++.|......-....-.+...+.-...-+.|.+.|.||+||...
T Consensus        56 ~~~~Dt~gq~~~~-------~~~~~y-~~~~~-~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~  126 (219)
T COG1100          56 LQLWDTAGQEEYR-------SLRPEY-YRGAN-GILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE  126 (219)
T ss_pred             EEeecCCCHHHHH-------HHHHHH-hcCCC-EEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence            7889999999853       222111 23333 57778887765555555555555544443346999999999999865


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc--CcccHHHHHHHHHHhhcc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR--KESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~--d~~~i~~L~~~Id~~~~y  218 (236)
                      ......+..        .+..   ..........+.....+... ++..++.  ...++..++..+-+.+..
T Consensus       127 ~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         127 QSSSEEILN--------QLNR---EVVLLVLAPKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             hhHHHHHHh--------hhhc---CcchhhhHhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHHHHH
Confidence            422111111        0000   00001111111222223334 8888998  999999999888776643

>PRK07560 elongation factor EF-2; Reviewed

Probab=94.84  E-value=0.26  Score=50.16  Aligned_cols=65  Identities=14%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ..++||||+.++      .......+...  . ++|+++|+.---.+...-   +  +....+.++|.|.++||+|+..
T Consensus        89 i~liDtPG~~df------~~~~~~~l~~~--D-~avlVvda~~g~~~~t~~---~--~~~~~~~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         89 INLIDTPGHVDF------GGDVTRAMRAV--D-GAIVVVDAVEGVMPQTET---V--LRQALRERVKPVLFINKVDRLI  153 (731)
T ss_pred             EEEEcCCCccCh------HHHHHHHHHhc--C-EEEEEEECCCCCCccHHH---H--HHHHHHcCCCeEEEEECchhhc
Confidence            478999998773      23344445333  3 578899986533332211   1  1122456889999999999864

>PRK12288 GTPase RsgA; Reviewed

Probab=94.71  E-value=0.32  Score=45.24  Aligned_cols=58  Identities=9%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584          131 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       131 ~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~  210 (236)
                      ..++|.+.|+||+||+... +...            +            .+..+..+..+ ..++++|+.++++++.|..
T Consensus       148 ~~~i~~VIVlNK~DL~~~~-~~~~------------~------------~~~~~~y~~~g-~~v~~vSA~tg~GideL~~  201 (347)
T PRK12288        148 TLGIEPLIVLNKIDLLDDE-GRAF------------V------------NEQLDIYRNIG-YRVLMVSSHTGEGLEELEA  201 (347)
T ss_pred             hcCCCEEEEEECccCCCcH-HHHH------------H------------HHHHHHHHhCC-CeEEEEeCCCCcCHHHHHH
Confidence            4689999999999997543 1100            0            00001112233 5789999999999999999


Q ss_pred             HHHH
Q 026584          211 QIDN  214 (236)
Q Consensus       211 ~Id~  214 (236)
                      .+..
T Consensus       202 ~L~~  205 (347)
T PRK12288        202 ALTG  205 (347)
T ss_pred             HHhh
Confidence            8865

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=94.70  E-value=0.086  Score=53.48  Aligned_cols=65  Identities=14%  Similarity=0.221  Sum_probs=40.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ++.++||||+.. |.     ......+...+   ++++++|+..--.+. ..+      +....+.++|.+.|+||+|..
T Consensus        87 ~i~liDTPG~~~-f~-----~~~~~al~~aD---~~llVvda~~g~~~~t~~~------~~~~~~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        87 LINLIDTPGHVD-FG-----GDVTRAMRAVD---GAIVVVCAVEGVMPQTETV------LRQALKENVKPVLFINKVDRL  151 (720)
T ss_pred             EEEEEeCCCccc-cH-----HHHHHHHHhcC---EEEEEEecCCCCCccHHHH------HHHHHHcCCCEEEEEEChhcc
Confidence            469999999877 22     23344554333   578889985422222 111      122335689999999999997


Q ss_pred             c
Q 026584          147 T  147 (236)
Q Consensus       147 ~  147 (236)
                      .
T Consensus       152 ~  152 (720)
T TIGR00490       152 I  152 (720)
T ss_pred             c
Confidence            4

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=94.32  E-value=0.28  Score=50.67  Aligned_cols=63  Identities=19%  Similarity=0.272  Sum_probs=40.6

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      =++||||+.++      .......++..+   +++.++|+.- +...+.-+      +......++|.|.++||+|..-
T Consensus       101 nliDtPGh~dF------~~e~~~al~~~D---~ailVvda~~Gv~~~t~~~------~~~~~~~~~p~i~~iNK~D~~~  164 (843)
T PLN00116        101 NLIDSPGHVDF------SSEVTAALRITD---GALVVVDCIEGVCVQTETV------LRQALGERIRPVLTVNKMDRCF  164 (843)
T ss_pred             EEECCCCHHHH------HHHHHHHHhhcC---EEEEEEECCCCCcccHHHH------HHHHHHCCCCEEEEEECCcccc
Confidence            48999997553      334455553333   5788899863 22222211      3445667999999999999974

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.28  E-value=0.6  Score=46.16  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=41.5

Q ss_pred             cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHH
Q 026584          132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~  210 (236)
                      -+.|.|.++||||.-..          +++....+|-...            =.++++|- ++.+|+|+.+++++..|..
T Consensus       252 A~VpiVvAinKiDkp~a----------~pekv~~eL~~~g------------i~~E~~GGdVQvipiSAl~g~nl~~L~e  309 (683)
T KOG1145|consen  252 ANVPIVVAINKIDKPGA----------NPEKVKRELLSQG------------IVVEDLGGDVQVIPISALTGENLDLLEE  309 (683)
T ss_pred             cCCCEEEEEeccCCCCC----------CHHHHHHHHHHcC------------ccHHHcCCceeEEEeecccCCChHHHHH
Confidence            59999999999995321          1111111111111            24789988 9999999999999999987


Q ss_pred             HHH
Q 026584          211 QID  213 (236)
Q Consensus       211 ~Id  213 (236)
                      +|=
T Consensus       310 ail  312 (683)
T KOG1145|consen  310 AIL  312 (683)
T ss_pred             HHH
Confidence            763

>cd03112 CobW_like The function of this protein family is unkown

Probab=93.51  E-value=0.21  Score=40.89  Aligned_cols=70  Identities=21%  Similarity=0.267  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHH--HHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVD--HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~--~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      +.+++++||||=.+.   ...+..++.  .+.. .... .+++++|+..+....+-.      -...-.++.--+.|+||
T Consensus        86 ~~d~I~IEt~G~~~p---~~~~~~~~~~~~~~~~~~~d-~vv~vvDa~~~~~~~~~~------~~~~~Qi~~ad~ivlnk  155 (158)
T cd03112          86 AFDRIVIETTGLADP---GPVAQTFFMDEELAERYLLD-GVITLVDAKHANQHLDQQ------TEAQSQIAFADRILLNK  155 (158)
T ss_pred             CCCEEEEECCCcCCH---HHHHHHHhhchhhhcceeec-cEEEEEEhhHhHHHhhcc------HHHHHHHHHCCEEEEec
Confidence            568999999994432   223333221  1221 2233 478999986554322111      11234466677789999


Q ss_pred             ccc
Q 026584          143 MDL  145 (236)
Q Consensus       143 ~DL  145 (236)
                      +||
T Consensus       156 ~dl  158 (158)
T cd03112         156 TDL  158 (158)
T ss_pred             ccC
Confidence            996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=93.39  E-value=0.89  Score=38.39  Aligned_cols=110  Identities=13%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-+.|||||-+...    ++  .... + +.. ++++++|..   +...|-  ..++..+.... =.+|.+.|.||+|+
T Consensus        59 ~i~~~Dt~g~~~~~~----~~--~~~~-~-~~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl  125 (215)
T PTZ00132         59 CFNVWDTAGQEKFGG----LR--DGYY-I-KGQ-CAIIMFDVT---SRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDV  125 (215)
T ss_pred             EEEEEECCCchhhhh----hh--HHHh-c-cCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccC
Confidence            356889999854311    11  1112 1 222 567788864   333331  22222222111 36899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      ....  ..   .                .       ..++....+ ..|+++|+.++.+++..+..|-+++-..
T Consensus       126 ~~~~--~~---~----------------~-------~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        126 KDRQ--VK---A----------------R-------QITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             cccc--CC---H----------------H-------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            5322  00   0                0       001112233 4788999999999999888888776544

>TIGR00101 ureG urease accessory protein UreG

Probab=93.17  E-value=0.77  Score=39.12  Aligned_cols=100  Identities=11%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             CCCEEEEeCCC--ceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           66 DDDYLVFDCPG--QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PG--QiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      +.+++++.|-|  +.+.+.         ..+.  +   .+|-++|+....+-...       ..  -.+...-+.|+||+
T Consensus        91 ~~D~iiIEt~G~~l~~~~~---------~~l~--~---~~i~vvD~~~~~~~~~~-------~~--~qi~~ad~~~~~k~  147 (199)
T TIGR00101        91 PLEMVFIESGGDNLSATFS---------PELA--D---LTIFVIDVAAGDKIPRK-------GG--PGITRSDLLVINKI  147 (199)
T ss_pred             CCCEEEEECCCCCcccccc---------hhhh--C---cEEEEEEcchhhhhhhh-------hH--hHhhhccEEEEEhh
Confidence            46899999999  444331         1121  2   25667888654442111       01  13344568999999


Q ss_pred             ccccch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          144 DLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       144 DLl~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      |+.+.. .+++.        +               .    +.+..+ .-..++++|+++++++++++..|-+.
T Consensus       148 d~~~~~~~~~~~--------~---------------~----~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~  194 (199)
T TIGR00101       148 DLAPMVGADLGV--------M---------------E----RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHY  194 (199)
T ss_pred             hccccccccHHH--------H---------------H----HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            997421 01111        0               0    111121 23789999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=93.13  E-value=0.12  Score=43.09  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=31.5

Q ss_pred             EEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhc
Q 026584          102 CAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYL  156 (236)
Q Consensus       102 ~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l  156 (236)
                      ++++++|+.. +......+-..+    ...+.+.|+|.|+||+||++.. .+..|+
T Consensus         2 vVl~VvDar~p~~~~~~~i~~~~----~l~~~~kp~IlVlNK~DL~~~~-~l~~~~   52 (172)
T cd04178           2 VILEVLDARDPLGCRCPQVEEAV----LQAGGNKKLVLVLNKIDLVPKE-NVEKWL   52 (172)
T ss_pred             EEEEEEECCCCCCCCCHHHHHHH----HhccCCCCEEEEEehhhcCCHH-HHHHHH
Confidence            5899999865 333333332221    1223578999999999998755 444443

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd00066 G-alpha G protein alpha subunit

Probab=92.92  E-value=0.69  Score=42.26  Aligned_cols=133  Identities=15%  Similarity=0.288  Sum_probs=73.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc------hhhHHHHHHHHHHHHhh----cCCCEE
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD------VTKFISGCMASLSAMVQ----LELPHV  137 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d------p~~~is~~l~sls~m~~----l~lP~I  137 (236)
                      .+-++|+.||-.   .|   ++-.....  +.. +++|++|+.-...      ...-+.-.+..+..+++    -+.|.+
T Consensus       162 ~~~~~DvgGq~~---~R---~kW~~~f~--~v~-~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil  232 (317)
T cd00066         162 KFRMFDVGGQRS---ER---KKWIHCFE--DVT-AIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII  232 (317)
T ss_pred             EEEEECCCCCcc---cc---hhHHHHhC--CCC-EEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence            467899999844   11   22334442  444 6899999864311      12334444444444444    378999


Q ss_pred             EEecccccccch---hHhhhhccc--c-HHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH
Q 026584          138 NILSKMDLVTNK---KEIEDYLNP--E-SQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ  211 (236)
Q Consensus       138 nVlsK~DLl~~~---~~l~~~l~~--~-~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~  211 (236)
                      .++||.|++..+   ..+..+...  + .... ++...-...+|..+.+.      .-..+..+..++.|.+++..++..
T Consensus       233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~-~~~~~~i~~~F~~~~~~------~~~~~~~~~t~a~Dt~~i~~vf~~  305 (317)
T cd00066         233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDY-EEAAKFIRKKFLDLNRN------PNKEIYPHFTCATDTENIRFVFDA  305 (317)
T ss_pred             EEccChHHHHHhhcCCCccccCCCCCCCCCCH-HHHHHHHHHHHHHhhcC------CCCeEEEEeccccchHHHHHHHHH
Confidence            999999998643   112223221  0 1111 11111111233333221      112377788999999999999988


Q ss_pred             HHHhh
Q 026584          212 IDNCI  216 (236)
Q Consensus       212 Id~~~  216 (236)
                      +-..+
T Consensus       306 v~~~i  310 (317)
T cd00066         306 VKDII  310 (317)
T ss_pred             HHHHH
Confidence            76643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=92.88  E-value=0.56  Score=42.22  Aligned_cols=83  Identities=11%  Similarity=0.109  Sum_probs=49.7

Q ss_pred             CCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHH
Q 026584           98 NFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA  176 (236)
Q Consensus        98 ~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~  176 (236)
                      +.. ++++++|+..-. ++ ..+.-++..+   ...+.|.+.|+||+||.... +...                    ..
T Consensus        78 nvD-~vllV~d~~~p~~s~-~~ldr~L~~~---~~~~ip~iIVlNK~DL~~~~-~~~~--------------------~~  131 (287)
T cd01854          78 NVD-QLVIVVSLNEPFFNP-RLLDRYLVAA---EAAGIEPVIVLTKADLLDDE-EEEL--------------------EL  131 (287)
T ss_pred             eCC-EEEEEEEcCCCCCCH-HHHHHHHHHH---HHcCCCEEEEEEHHHCCChH-HHHH--------------------HH
Confidence            344 367778875432 22 3444443322   23589999999999996532 1000                    00


Q ss_pred             HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                             ......+ ..++++|+.++.+++.|...+..
T Consensus       132 -------~~~~~~g-~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         132 -------VEALALG-YPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -------HHHHhCC-CeEEEEECCCCccHHHHHhhhcc
Confidence                   0001122 57889999999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=92.73  E-value=1.2  Score=42.62  Aligned_cols=129  Identities=16%  Similarity=0.197  Sum_probs=77.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ---++||=|      |-++++.-++-|-  +.+|-+.+|=-=|.........        +.+|+-+++|.+.|++|||+
T Consensus       202 lVsfVDtvG------HEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--------Lgi~~a~~lPviVvvTK~D~  267 (527)
T COG5258         202 LVSFVDTVG------HEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--------LGIALAMELPVIVVVTKIDM  267 (527)
T ss_pred             EEEEEecCC------ccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--------hhhhhhhcCCEEEEEEeccc
Confidence            357899999      7788888888883  5677665555444444444444        56777899999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH--HHHHhhcc-CCeeEEEeeccCcccHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS--LIELVDEY-SMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~--l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      ..+. .+....+ +...++...+. .+-..+.....  -+..+..- +.+..+-.|+-++++++-|....-
T Consensus       268 ~~dd-r~~~v~~-ei~~~Lk~v~R-ip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         268 VPDD-RFQGVVE-EISALLKRVGR-IPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             CcHH-HHHHHHH-HHHHHHHHhcc-cceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            9765 3333222 23333332221 00000111111  01222222 357889999999999987766543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=92.66  E-value=0.39  Score=33.44  Aligned_cols=44  Identities=14%  Similarity=0.249  Sum_probs=24.2

Q ss_pred             CCceEEEEeecCCC-cc-chhhHHHHHHHHHHHHhhc-CCCEEEEecccc
Q 026584           98 NFNVCAVYLLDSQF-IT-DVTKFISGCMASLSAMVQL-ELPHVNILSKMD  144 (236)
Q Consensus        98 ~~~~~~V~LiD~~~-~~-dp~~~is~~l~sls~m~~l-~lP~InVlsK~D  144 (236)
                      ..+-+++|++|.+- |. ....-++   +--++.-++ +.|.+.|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~---L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLS---LFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHH---HHHHHHHHTTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHH---HHHHHHHHcCCCCEEEEEeccC
Confidence            34568999999843 22 2333332   224555567 899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=92.56  E-value=0.97  Score=42.45  Aligned_cols=119  Identities=17%  Similarity=0.306  Sum_probs=77.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHh-----------hCCC-------c-eEEEEeecC-CCccchhhHHHHHHHHHH
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLK-----------SRNF-------N-VCAVYLLDS-QFITDVTKFISGCMASLS  127 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~-----------~~~~-------~-~~~V~LiD~-~~~~dp~~~is~~l~sls  127 (236)
                      ..-++||||--+....+.+..-+++++.           +...       | =|++|++-. .+...|-+.        -
T Consensus        83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI--------e  154 (373)
T COG5019          83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI--------E  154 (373)
T ss_pred             EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH--------H
Confidence            3689999999998877777777776652           1111       1 256666664 445555553        3


Q ss_pred             HHhhc--CCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-c
Q 026584          128 AMVQL--ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-S  204 (236)
Q Consensus       128 ~m~~l--~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~  204 (236)
                      +|-++  .+-.|+|+.|+|.+... ++..+.                       +.|.+.++.++.--|.|.+..+.+ .
T Consensus       155 ~Mk~ls~~vNlIPVI~KaD~lT~~-El~~~K-----------------------~~I~~~i~~~nI~vf~pyd~e~~~~e  210 (373)
T COG5019         155 AMKRLSKRVNLIPVIAKADTLTDD-ELAEFK-----------------------ERIREDLEQYNIPVFDPYDPEDDEDE  210 (373)
T ss_pred             HHHHHhcccCeeeeeeccccCCHH-HHHHHH-----------------------HHHHHHHHHhCCceeCCCCccccchh
Confidence            34444  67789999999998766 443322                       234466777887555587777653 6


Q ss_pred             HHHHHHHHHHhhcc
Q 026584          205 IRYVLSQIDNCIQW  218 (236)
Q Consensus       205 i~~L~~~Id~~~~y  218 (236)
                      .-+.-+.+..+++|
T Consensus       211 ~~e~~~~l~~~~PF  224 (373)
T COG5019         211 SLEENQDLRSLIPF  224 (373)
T ss_pred             hHHHHHHHhhcCCe
Confidence            66667777777776

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.53  E-value=1.4  Score=38.08  Aligned_cols=110  Identities=15%  Similarity=0.291  Sum_probs=67.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      -=|-||-|| |=|.      .|+..- -++.+ -+|++.|...   .++|=  -.|+.-.--...-++|.+.|-||||+.
T Consensus        60 lQIWDTAGQ-ERFr------tit~sy-YR~ah-Gii~vyDiT~---~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~  127 (205)
T KOG0084|consen   60 LQIWDTAGQ-ERFR------TITSSY-YRGAH-GIIFVYDITK---QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT  127 (205)
T ss_pred             EEeeecccc-HHHh------hhhHhh-ccCCC-eEEEEEEccc---HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence            456799999 4333      222211 13444 4677788543   34332  234434444444578999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ...   . +           .          -.++.+..++-.|.+.|+++..++++.+..+.+.+
T Consensus       128 ~~~-~v~---~-~-----------~----------a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~l  171 (205)
T KOG0084|consen  128 EKR-VVS---T-E-----------E----------AQEFADELGIPIFLETSAKDSTNVEDAFLTLAKEL  171 (205)
T ss_pred             hhe-ecC---H-H-----------H----------HHHHHHhcCCcceeecccCCccCHHHHHHHHHHHH
Confidence            543 110   0 0           0          01334556665699999999999999999998854

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=92.23  E-value=0.75  Score=42.36  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc-----------cCCCCEEEEeCCCceeeeeccchHHHHHHHH-hhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN-----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~-----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L-~~~~~~~~~V~  105 (236)
                      ||-|...-++-+...--.+.. ....           .......++||||..+..........+++.. .+.+.. +++|
T Consensus        47 tGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~D-vVLy  124 (313)
T TIGR00991        47 GGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTID-VLLY  124 (313)
T ss_pred             CCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCC-EEEE
Confidence            677777777777632101111 1100           0123578999999666422122222233322 122444 4677


Q ss_pred             e--ecCCCccchhhHHHHHHHH-HHHHhhcCCCEEEEecccccccch-hHhhhhccccHHH
Q 026584          106 L--LDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQF  162 (236)
Q Consensus       106 L--iD~~~~~dp~~~is~~l~s-ls~m~~l~lP~InVlsK~DLl~~~-~~l~~~l~~~~~~  162 (236)
                      +  +|+.....-..-+-..+.. +.  -+.--+.|.|+|++|.+..+ ..++.|+......
T Consensus       125 V~rLD~~R~~~~DkqlLk~Iqe~FG--~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~  183 (313)
T TIGR00991       125 VDRLDAYRVDTLDGQVIRAITDSFG--KDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEA  183 (313)
T ss_pred             EeccCcccCCHHHHHHHHHHHHHhh--hhhhccEEEEEECCccCCCCCCCHHHHHHhcHHH
Confidence            6  4554443332222222211 11  11235789999999988543 2466666643333

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=92.09  E-value=2.8  Score=34.25  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      +.+|+|+||||.+.     +   .....+...+  . ++..+.....  .+....+       ...-+.+.|+..|+||+
T Consensus        92 ~~d~viiDtpp~~~-----~---~~~~~l~~aD--~-vliv~~~~~~~~~~~~~~~-------~~l~~~~~~~~vV~N~~  153 (179)
T cd03110          92 GAELIIIDGPPGIG-----C---PVIASLTGAD--A-ALLVTEPTPSGLHDLERAV-------ELVRHFGIPVGVVINKY  153 (179)
T ss_pred             CCCEEEEECcCCCc-----H---HHHHHHHcCC--E-EEEEecCCcccHHHHHHHH-------HHHHHcCCCEEEEEeCC
Confidence            56899999998653     1   2233343333  2 4444444432  2222222       22335688999999999


Q ss_pred             ccc
Q 026584          144 DLV  146 (236)
Q Consensus       144 DLl  146 (236)
                      |.-
T Consensus       154 ~~~  156 (179)
T cd03110         154 DLN  156 (179)
T ss_pred             CCC
Confidence            863

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=91.99  E-value=0.48  Score=43.95  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=46.2

Q ss_pred             cCCCEEEEe-cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHH
Q 026584          132 LELPHVNIL-SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYV  208 (236)
Q Consensus       132 l~lP~InVl-sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L  208 (236)
                      +.+.||.++ ||+||++.+..+++                        +++|..++.....  ...+|+|++=+.+++.+
T Consensus       177 M~LkhiiilQNKiDli~e~~A~eq------------------------~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v  232 (466)
T KOG0466|consen  177 MKLKHIIILQNKIDLIKESQALEQ------------------------HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVV  232 (466)
T ss_pred             hhhceEEEEechhhhhhHHHHHHH------------------------HHHHHHHHhccccCCCceeeehhhhccChHHH
Confidence            578899886 99999976532221                        2233344444433  58999999999999999


Q ss_pred             HHHHHHhhccc
Q 026584          209 LSQIDNCIQWG  219 (236)
Q Consensus       209 ~~~Id~~~~y~  219 (236)
                      ...|=+.++.-
T Consensus       233 ~eyivkkIPvP  243 (466)
T KOG0466|consen  233 CEYIVKKIPVP  243 (466)
T ss_pred             HHHHHhcCCCC
Confidence            99998877653

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=91.51  E-value=0.28  Score=44.66  Aligned_cols=57  Identities=11%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             cCCCEEEEecccccccch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584          132 LELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       132 l~lP~InVlsK~DLl~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~  210 (236)
                      +..+.+.|+||+||++.. .+++.++.                          .+-.-.....++|+|++++++++.|+.
T Consensus       229 f~~ADIVVLNKiDLl~~~~~dle~~~~--------------------------~lr~lnp~a~I~~vSA~tGeGld~L~~  282 (290)
T PRK10463        229 FAAASLMLLNKVDLLPYLNFDVEKCIA--------------------------CAREVNPEIEIILISATSGEGMDQWLN  282 (290)
T ss_pred             hhcCcEEEEEhHHcCcccHHHHHHHHH--------------------------HHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence            478899999999998532 11211111                          111112448899999999999999999


Q ss_pred             HHHH
Q 026584          211 QIDN  214 (236)
Q Consensus       211 ~Id~  214 (236)
                      .+.+
T Consensus       283 ~L~~  286 (290)
T PRK10463        283 WLET  286 (290)
T ss_pred             HHHH
Confidence            9865

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=91.36  E-value=0.41  Score=36.02  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh--hcCCCEEEEecccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV--QLELPHVNILSKMD  144 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~--~l~lP~InVlsK~D  144 (236)
                      +.+.|++||.+....+...      +++.+   +++++.|+.   ++.++-.  .++.-+...-  .-.+|.|.|.||.|
T Consensus        52 ~~~~d~~g~~~~~~~~~~~------~~~~d---~~ilv~D~s---~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   52 LQFWDFGGQEEFYSQHQFF------LKKAD---AVILVYDLS---DPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEESSSHCHHCTSHHH------HHHSC---EEEEEEECC---GHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEecCccceecccccch------hhcCc---EEEEEEcCC---ChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            4577999997655433322      43332   578888855   5554433  2221222222  23599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=90.92  E-value=1  Score=36.51  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..+|+|+||||     .+...    ...+...+  .++|-....  ..|..-++        --..++.-++.|+||+|
T Consensus        91 ~~D~iiIDtaG-----~~~~~----~~~~~~Ad--~~ivv~tpe--~~D~y~~~--------k~~~~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVG-----VGQSE----VDIASMAD--TTVVVMAPG--AGDDIQAI--------KAGIMEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCc-----cChhh----hhHHHhCC--EEEEEECCC--chhHHHHh--------hhhHhhhcCEEEEeCCC
Confidence            56899999999     12222    22333233  333332322  33332222        22336778899999997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=90.80  E-value=0.64  Score=37.29  Aligned_cols=69  Identities=10%  Similarity=0.051  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      .....|+||||--+....+.  ..+.+++  .... +++|++++............    ....-...-.++.|+||+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~--~~~~~~~--~~~d-~vi~V~~~~~~~~~~~~~~l----~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHT--EITEEYL--PKAD-VVIFVVDANQDLTESDMEFL----KQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTS--HHHHHHH--STTE-EEEEEEETTSTGGGHHHHHH----HHHHTTTCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhH--HHHHHhh--ccCC-EEEEEeccCcccchHHHHHH----HHHhcCCCCeEEEEEcCC
Confidence            34689999999544332222  3334444  2333 68999999774443322211    222333455599999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.63  E-value=2.5  Score=38.16  Aligned_cols=124  Identities=16%  Similarity=0.241  Sum_probs=70.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH---HHHHHHHh--hcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC---MASLSAMV--QLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~---l~sls~m~--~l~lP~InVlsK  142 (236)
                      ++=+.|+|||+-.|-.+--..++.+.   -+   +.+|++||+     ..|+-++   -+...--+  +-.+-.=..+-|
T Consensus        76 nf~v~dfPGQ~~~Fd~s~D~e~iF~~---~g---ALifvIDaQ-----ddy~eala~L~~~v~raykvNp~in~EVfiHK  144 (347)
T KOG3887|consen   76 NFQVWDFPGQMDFFDPSFDYEMIFRG---VG---ALIFVIDAQ-----DDYMEALARLHMTVERAYKVNPNINFEVFIHK  144 (347)
T ss_pred             ceEEeecCCccccCCCccCHHHHHhc---cC---eEEEEEech-----HHHHHHHHHHHHHhhheeecCCCceEEEEEEe
Confidence            57899999999999544333344332   22   479999987     3444322   11111111  112222223789


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .|=++.+..++.                ....+.+-+..++++..+---++|..-|+-|..-.+..-+.++|.++-
T Consensus       145 vDGLsdd~kiet----------------qrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  145 VDGLSDDFKIET----------------QRDIHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             ccCCchhhhhhh----------------HHHHHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHHhhh
Confidence            998876522211                001344455555555444333888888888887777777777776543

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=90.52  E-value=0.26  Score=39.90  Aligned_cols=12  Identities=50%  Similarity=1.043  Sum_probs=10.4

Q ss_pred             CEEEEeCCCcee
Q 026584           68 DYLVFDCPGQIE   79 (236)
Q Consensus        68 ~Yil~D~PGQiE   79 (236)
                      +|+||||||...
T Consensus        64 d~viiD~p~~~~   75 (179)
T cd02036          64 DYILIDSPAGIE   75 (179)
T ss_pred             CEEEEECCCCCc
Confidence            799999999754

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=90.23  E-value=4.8  Score=34.35  Aligned_cols=64  Identities=17%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D  144 (236)
                      ..+|+|+|||+-+..        .....|...+.   ++..+++...+ -..    .+-.....-+.+.+. ..|+||++
T Consensus       108 ~yD~VIiD~p~~~~~--------~~~~~l~~ad~---vliv~~~~~~s-~~~----~~~~~~~~~~~~~~~~~vv~N~~~  171 (251)
T TIGR01969       108 DTDFLLIDAPAGLER--------DAVTALAAADE---LLLVVNPEISS-ITD----ALKTKIVAEKLGTAILGVVLNRVT  171 (251)
T ss_pred             hCCEEEEeCCCccCH--------HHHHHHHhCCe---EEEEECCCCch-HHH----HHHHHHHHHhcCCceEEEEEECCC
Confidence            458999999997642        22233433332   44445544322 111    111122233457775 46789987


Q ss_pred             c
Q 026584          145 L  145 (236)
Q Consensus       145 L  145 (236)
                      -
T Consensus       172 ~  172 (251)
T TIGR01969       172 R  172 (251)
T ss_pred             c
Confidence            5

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=89.20  E-value=2.3  Score=36.36  Aligned_cols=16  Identities=25%  Similarity=0.503  Sum_probs=13.9

Q ss_pred             CCCEEEEecccccccc
Q 026584          133 ELPHVNILSKMDLVTN  148 (236)
Q Consensus       133 ~lP~InVlsK~DLl~~  148 (236)
                      .+|.|.|-||+||...
T Consensus       129 ~~PiilVGnK~Dl~~~  144 (202)
T cd04102         129 QIPLLVIGTKLDQIPE  144 (202)
T ss_pred             CceEEEEEECccchhh
Confidence            6899999999999753

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=89.20  E-value=0.77  Score=38.93  Aligned_cols=57  Identities=11%  Similarity=0.250  Sum_probs=38.3

Q ss_pred             cCCCEEEEecccccccchh-HhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584          132 LELPHVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       132 l~lP~InVlsK~DLl~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~  210 (236)
                      .+.|.+.|+||+|+.+... +...                       +...+.++   .....++++|+.++++++.++.
T Consensus       147 ~~~a~iiv~NK~Dl~~~~~~~~~~-----------------------~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~  200 (207)
T TIGR00073       147 FKEADLIVINKADLAEAVGFDVEK-----------------------MKADAKKI---NPEAEIILMSLKTGEGLDEWLE  200 (207)
T ss_pred             HhhCCEEEEEHHHccccchhhHHH-----------------------HHHHHHHh---CCCCCEEEEECCCCCCHHHHHH
Confidence            4688999999999975320 1111                       01111111   1347899999999999999999


Q ss_pred             HHHH
Q 026584          211 QIDN  214 (236)
Q Consensus       211 ~Id~  214 (236)
                      .+.+
T Consensus       201 ~i~~  204 (207)
T TIGR00073       201 FLEG  204 (207)
T ss_pred             HHHH
Confidence            9865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=88.86  E-value=1  Score=45.71  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+=||||||.+. |+     ...-+.|+-.+.   +|.++|+.-=-.|..-- .    .-...+.++|.|.++||+|.+
T Consensus        76 ~~iNlIDTPGHVD-Ft-----~EV~rslrvlDg---avvVvdaveGV~~QTEt-v----~rqa~~~~vp~i~fiNKmDR~  141 (697)
T COG0480          76 YRINLIDTPGHVD-FT-----IEVERSLRVLDG---AVVVVDAVEGVEPQTET-V----WRQADKYGVPRILFVNKMDRL  141 (697)
T ss_pred             eEEEEeCCCCccc-cH-----HHHHHHHHhhcc---eEEEEECCCCeeecHHH-H----HHHHhhcCCCeEEEEECcccc
Confidence            3567999999777 32     334444532342   55566775433333321 1    234456899999999999998


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      ..
T Consensus       142 ~a  143 (697)
T COG0480         142 GA  143 (697)
T ss_pred             cc
Confidence            64

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=88.54  E-value=4.1  Score=39.12  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=38.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      ..++|||||||..    |.+  ..+++.|.   +......+++++|+..-.+......       .+-+.--+.-.|+||
T Consensus       182 ~~DvViIDTaGr~----~~d--~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~-------~F~~~~~~~g~IlTK  248 (429)
T TIGR01425       182 NFDIIIVDTSGRH----KQE--DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK-------AFKDSVDVGSVIITK  248 (429)
T ss_pred             CCCEEEEECCCCC----cch--HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH-------HHHhccCCcEEEEEC
Confidence            4589999999942    221  22333342   2222345788999865433322221       111112366778999


Q ss_pred             cccccch
Q 026584          143 MDLVTNK  149 (236)
Q Consensus       143 ~DLl~~~  149 (236)
                      .|-..+.
T Consensus       249 lD~~arg  255 (429)
T TIGR01425       249 LDGHAKG  255 (429)
T ss_pred             ccCCCCc
Confidence            9976543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=88.49  E-value=1.9  Score=38.18  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=39.0

Q ss_pred             CEEEEeCCCceeee----eccchHHHHHHHHhhCCCceEEEEe--ecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEE
Q 026584           68 DYLVFDCPGQIELF----THVPVLRNFVDHLKSRNFNVCAVYL--LDSQFITDVTKFISGCMASLSAMV--QLELPHVNI  139 (236)
Q Consensus        68 ~Yil~D~PGQiElf----~~~~~~~~iv~~L~~~~~~~~~V~L--iD~~~~~dp~~~is~~l~sls~m~--~l~lP~InV  139 (236)
                      .+.++||||-.|--    .....+..+-+.+++.+.. +++|+  +|+........-+-..   +.-.+  ++-.+.+.|
T Consensus        80 ~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id-vIL~V~rlD~~r~~~~d~~llk~---I~e~fG~~i~~~~ivV  155 (249)
T cd01853          80 KLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD-VVLYVDRLDMYRRDYLDLPLLRA---ITDSFGPSIWRNAIVV  155 (249)
T ss_pred             EEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC-EEEEEEcCCCCCCCHHHHHHHHH---HHHHhChhhHhCEEEE
Confidence            57899999944421    1111222233344333444 45565  3544433332222111   11111  222578999


Q ss_pred             ecccccccch
Q 026584          140 LSKMDLVTNK  149 (236)
Q Consensus       140 lsK~DLl~~~  149 (236)
                      +||+|...+.
T Consensus       156 ~T~~d~~~p~  165 (249)
T cd01853         156 LTHAASSPPD  165 (249)
T ss_pred             EeCCccCCCC
Confidence            9999998654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=88.04  E-value=2.8  Score=39.51  Aligned_cols=85  Identities=16%  Similarity=0.181  Sum_probs=42.7

Q ss_pred             cCCCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC--CEEEEe
Q 026584           64 YLDDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL--PHVNIL  140 (236)
Q Consensus        64 ~~~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l--P~InVl  140 (236)
                      +.+.+++||||||    +.+++. ....+..|.......-.++++++..-.+.-.-+...+....-..+.-+  +.=.|+
T Consensus       213 l~~~DlVLIDTaG----~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~  288 (374)
T PRK14722        213 LRNKHMVLIDTIG----MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCIL  288 (374)
T ss_pred             hcCCCEEEEcCCC----CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence            3356899999999    443332 334445553323333457778877644332222111111111111111  234679


Q ss_pred             cccccccchhHh
Q 026584          141 SKMDLVTNKKEI  152 (236)
Q Consensus       141 sK~DLl~~~~~l  152 (236)
                      ||.|=..+.+.+
T Consensus       289 TKlDEt~~~G~~  300 (374)
T PRK14722        289 TKLDEASNLGGV  300 (374)
T ss_pred             eccccCCCccHH
Confidence            999987665443

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=87.92  E-value=1.9  Score=36.72  Aligned_cols=112  Identities=15%  Similarity=0.239  Sum_probs=58.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecC-CCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~-~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..-|.||+||-|.=.    ++.  ..+ +.+.-.+.||=+++ ..+..-..+...+   +-+.-+-.+|.|.|-||+||.
T Consensus        52 ~l~ilDt~g~~~~~~----~~~--~~~-~~~~gF~lVysitd~~SF~~~~~l~~~I---~r~~~~~~~PivlVGNK~Dl~  121 (196)
T KOG0395|consen   52 MLEILDTAGQEEFSA----MRD--LYI-RNGDGFLLVYSITDRSSFEEAKQLREQI---LRVKGRDDVPIILVGNKCDLE  121 (196)
T ss_pred             EEEEEcCCCcccChH----HHH--Hhh-ccCcEEEEEEECCCHHHHHHHHHHHHHH---HHhhCcCCCCEEEEEEcccch
Confidence            457999999877322    111  112 22223455653333 2222222322221   222233568999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... +.    .           .+.+       ++   +...++ ..|+-.|++...++++++..+=+..
T Consensus       122 ~~R-~V----~-----------~eeg-------~~---la~~~~-~~f~E~Sak~~~~v~~~F~~L~r~~  164 (196)
T KOG0395|consen  122 RER-QV----S-----------EEEG-------KA---LARSWG-CAFIETSAKLNYNVDEVFYELVREI  164 (196)
T ss_pred             hcc-cc----C-----------HHHH-------HH---HHHhcC-CcEEEeeccCCcCHHHHHHHHHHHH
Confidence            532 11    0           0000       01   122333 4488888888888887777665543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=87.41  E-value=4.6  Score=32.78  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=39.0

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+++|+||||-.-.  ....+..+ ..+......-.+++++|+..   +.+-+. ....+  .-+.+ ..-.|+||+|.
T Consensus        82 ~~d~viiDt~g~~~~--~~~~l~~l-~~l~~~~~~~~~~lVv~~~~---~~~~~~-~~~~~--~~~~~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQI--DENLMEEL-KKIKRVVKPDEVLLVVDAMT---GQDAVN-QAKAF--NEALG-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchh--hHHHHHHH-HHHHhhcCCCeEEEEEECCC---ChHHHH-HHHHH--HhhCC-CCEEEEECCcC
Confidence            557999999995432  22223333 22222112445788899742   222222 11222  12234 36677899998


Q ss_pred             ccch
Q 026584          146 VTNK  149 (236)
Q Consensus       146 l~~~  149 (236)
                      ..+.
T Consensus       152 ~~~~  155 (173)
T cd03115         152 DARG  155 (173)
T ss_pred             CCCc
Confidence            7654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>smart00275 G_alpha G protein alpha subunit

Probab=87.36  E-value=10  Score=35.08  Aligned_cols=179  Identities=15%  Similarity=0.179  Sum_probs=92.0

Q ss_pred             ccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHH------------Hhcc---------cCCCCEEEEeCCCce
Q 026584           20 DIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAE------------ELDN---------YLDDDYLVFDCPGQI   78 (236)
Q Consensus        20 DIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~------------~i~~---------~~~~~Yil~D~PGQi   78 (236)
                      +|+.+-.-..|.+-+.-..+=.+.-+..|+.++++.....            ....         +..-.+.++|..||-
T Consensus       116 ~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr  195 (342)
T smart00275      116 AIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQR  195 (342)
T ss_pred             HHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHhhheeCCccceEEEEEEECCeEEEEEecCCch
Confidence            4555555444555544344446666788888888322211            1100         011236789999982


Q ss_pred             eeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-----ch-hhHHHHHHHHHHHHhh----cCCCEEEEecccccccc
Q 026584           79 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DV-TKFISGCMASLSAMVQ----LELPHVNILSKMDLVTN  148 (236)
Q Consensus        79 Elf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-----dp-~~~is~~l~sls~m~~----l~lP~InVlsK~DLl~~  148 (236)
                         ..|   ++-.....  +.. +++|++|+.-..     ++ ..-+.-.+..+..+++    -+.|.+.++||.|++..
T Consensus       196 ---~~R---~kW~~~f~--~v~-~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~  266 (342)
T smart00275      196 ---SER---KKWIHCFD--NVT-AIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEE  266 (342)
T ss_pred             ---hhh---hhHHHHhC--CCC-EEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHH
Confidence               111   23334442  444 689999987431     11 1223333333333333    37899999999999864


Q ss_pred             h---hHhhhhccc--cHHHHHHHhhhcchhHHHHHHHHHHHHhhc-c-CCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          149 K---KEIEDYLNP--ESQFLLSELNQHMAPQFAKLNKSLIELVDE-Y-SMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       149 ~---~~l~~~l~~--~~~~l~~~l~~~~~~~~~~l~~~l~~li~d-~-~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +   ..+..+...  +.... ++...-...+|..       +... - ..+-.+..++.|.+++..++..+...
T Consensus       267 Kl~~~~l~~~fp~y~g~~~~-~~~~~yi~~~F~~-------~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~  332 (342)
T smart00275      267 KIKKVPLVDYFPDYKGPNDY-EAAAKFIKQKFLR-------LNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI  332 (342)
T ss_pred             HhCCCchhccCCCCCCCCCH-HHHHHHHHHHHHH-------hccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence            3   112222221  00000 0000001112222       2211 1 23778889999999999999887764

Subunit of G proteins that contains the guanine nucleotide binding site

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=86.37  E-value=1.3  Score=43.10  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=42.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      -=|+||||      |-+.+-..=+-| +. .. .++.|+||.-=.=| .+|+      +.--+..+++-|.|+||+|--.
T Consensus        70 INIvDTPG------HADFGGEVERvl-~M-VD-gvlLlVDA~EGpMPQTrFV------lkKAl~~gL~PIVVvNKiDrp~  134 (603)
T COG1217          70 INIVDTPG------HADFGGEVERVL-SM-VD-GVLLLVDASEGPMPQTRFV------LKKALALGLKPIVVINKIDRPD  134 (603)
T ss_pred             EEEecCCC------cCCccchhhhhh-hh-cc-eEEEEEEcccCCCCchhhh------HHHHHHcCCCcEEEEeCCCCCC
Confidence            46899999      444443322223 22 12 47889999654433 5666      4556678999999999999754

>COG1161 Predicted GTPases [General function prediction only]

Probab=86.21  E-value=2.7  Score=38.59  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      .+-++||++.      ..++.+...-+  ..-+++.++|++.-.....-.      +.-. .-+-|.+.|+||+||++..
T Consensus        13 ~i~~~~g~~~------k~~~~~~~~~~--~~d~vvevvDar~P~~s~~~~------l~~~-v~~k~~i~vlNK~DL~~~~   77 (322)
T COG1161          13 KIQWFPGHMK------KAKRQLKEVLK--SVDVVVEVVDARDPLGTRNPE------LERI-VKEKPKLLVLNKADLAPKE   77 (322)
T ss_pred             cccCCCCchH------HHHHHHHHhcc--cCCEEEEEEeccccccccCcc------HHHH-HccCCcEEEEehhhcCCHH
Confidence            5566788443      44454444422  233689999996532222111      1222 2478889999999999765


Q ss_pred             hHhhhhcc
Q 026584          150 KEIEDYLN  157 (236)
Q Consensus       150 ~~l~~~l~  157 (236)
                       ...+|..
T Consensus        78 -~~~~W~~   84 (322)
T COG1161          78 -VTKKWKK   84 (322)
T ss_pred             -HHHHHHH
Confidence             4444433

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.16  E-value=4  Score=35.47  Aligned_cols=110  Identities=14%  Similarity=0.204  Sum_probs=61.2

Q ss_pred             EEEeCCCceeeeeccchHHHHHHH-HhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~-L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      -|.||-||-...+       |... ..+...-+.+.-+.+-..+.+-...+...=-..+    =+.|.+.|=||+|+-.+
T Consensus        64 QiWDtaGQerf~t-------i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~----~~v~~~LvGNK~D~~~~  132 (207)
T KOG0078|consen   64 QIWDTAGQERFRT-------ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS----DDVVKILVGNKCDLEEK  132 (207)
T ss_pred             EEEEcccchhHHH-------HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC----CCCcEEEeecccccccc
Confidence            4667777654322       2222 2222211333333344445555554443222222    38999999999999643


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      . +.               ..+.       -+   .+..+| -+.|.-.|++++.+|++.+..+-+.+.
T Consensus       133 R-~V---------------~~e~-------ge---~lA~e~-G~~F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  133 R-QV---------------SKER-------GE---ALAREY-GIKFFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             c-cc---------------cHHH-------HH---HHHHHh-CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence            2 11               0001       11   223344 389999999999999999888877544

>CHL00175 minD septum-site determining protein; Validated

Probab=85.72  E-value=0.84  Score=40.37  Aligned_cols=14  Identities=43%  Similarity=1.080  Sum_probs=11.4

Q ss_pred             CCCEEEEeCCCcee
Q 026584           66 DDDYLVFDCPGQIE   79 (236)
Q Consensus        66 ~~~Yil~D~PGQiE   79 (236)
                      ..+|||||||+.+.
T Consensus       126 ~yD~VIiDtpp~~~  139 (281)
T CHL00175        126 GYDYILIDCPAGID  139 (281)
T ss_pred             CCCEEEEeCCCCCC
Confidence            45899999999754

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.55  E-value=3.2  Score=39.11  Aligned_cols=73  Identities=16%  Similarity=0.289  Sum_probs=47.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHh-----------hC------CCc-eEEEEeecC-CCccchhhHHHHHHHHHHHH
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLK-----------SR------NFN-VCAVYLLDS-QFITDVTKFISGCMASLSAM  129 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~-----------~~------~~~-~~~V~LiD~-~~~~dp~~~is~~l~sls~m  129 (236)
                      .=++||||--+.+-.+.+.+-+++++.           +.      +-| =|++|++-. .+..+|-+        +..|
T Consensus        81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--------i~~M  152 (366)
T KOG2655|consen   81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--------IEFM  152 (366)
T ss_pred             eEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--------HHHH
Confidence            567999999998876666666665551           11      112 245665554 44456655        3344


Q ss_pred             hh--cCCCEEEEecccccccch
Q 026584          130 VQ--LELPHVNILSKMDLVTNK  149 (236)
Q Consensus       130 ~~--l~lP~InVlsK~DLl~~~  149 (236)
                      -+  -.+..|+|+.|+|.+...
T Consensus       153 k~l~~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  153 KKLSKKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             HHHhccccccceeeccccCCHH
Confidence            44  478899999999999766

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=85.02  E-value=5.7  Score=33.79  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=37.3

Q ss_pred             CCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           66 DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      +.++|||||||.-.-- .....++++++.+    .+.-+.+++++..-.+--.-+      ....-.+++.. .|+||.|
T Consensus        83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~~~~~~~~~------~~~~~~~~~~~-lIlTKlD  151 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSATMGQEDLEQA------LAFYEAFGIDG-LILTKLD  151 (196)
T ss_dssp             TSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGGGGHHHHHH------HHHHHHSSTCE-EEEESTT
T ss_pred             CCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEecccChHHHHHH------HHHhhcccCce-EEEEeec
Confidence            4589999999933110 1112233333333    223466677776543222211      22222345554 4599999


Q ss_pred             cccchhH
Q 026584          145 LVTNKKE  151 (236)
Q Consensus       145 Ll~~~~~  151 (236)
                      -..+.+.
T Consensus       152 et~~~G~  158 (196)
T PF00448_consen  152 ETARLGA  158 (196)
T ss_dssp             SSSTTHH
T ss_pred             CCCCccc
Confidence            8766543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=84.40  E-value=4.1  Score=40.35  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=37.9

Q ss_pred             CCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      +.++|||||||-.    +++. ...-+..|... .....+.++++..-  +.+.-. .+   . .++-.-+.-.|+||+|
T Consensus       428 ~~DLVLIDTaG~s----~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss--~~Dl~e-ii---~-~f~~~~~~gvILTKlD  495 (559)
T PRK12727        428 DYKLVLIDTAGMG----QRDRALAAQLNWLRAA-RQVTSLLVLPANAH--FSDLDE-VV---R-RFAHAKPQGVVLTKLD  495 (559)
T ss_pred             cCCEEEecCCCcc----hhhHHHHHHHHHHHHh-hcCCcEEEEECCCC--hhHHHH-HH---H-HHHhhCCeEEEEecCc
Confidence            5689999999943    2222 11122233211 12345667787642  222221 11   1 1222346778999999


Q ss_pred             cccchh
Q 026584          145 LVTNKK  150 (236)
Q Consensus       145 Ll~~~~  150 (236)
                      -..+.+
T Consensus       496 Et~~lG  501 (559)
T PRK12727        496 ETGRFG  501 (559)
T ss_pred             Cccchh
Confidence            866544

>PRK10818 cell division inhibitor MinD; Provisional

Probab=84.27  E-value=1.5  Score=38.31  Aligned_cols=14  Identities=43%  Similarity=0.783  Sum_probs=11.8

Q ss_pred             CCCEEEEeCCCcee
Q 026584           66 DDDYLVFDCPGQIE   79 (236)
Q Consensus        66 ~~~Yil~D~PGQiE   79 (236)
                      ..+|+||||||.+.
T Consensus       113 ~yd~viiD~p~~~~  126 (270)
T PRK10818        113 DFEFIVCDSPAGIE  126 (270)
T ss_pred             CCCEEEEeCCCCcc
Confidence            45899999999775

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=84.17  E-value=10  Score=38.15  Aligned_cols=67  Identities=22%  Similarity=0.360  Sum_probs=43.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ..-||||||.+- ||.     ..-+.|+-++.   +|.++|+..=-.+..     ...---|-|.+.|.|.-+||+|-++
T Consensus       105 ~iNiIDTPGHvD-FT~-----EVeRALrVlDG---aVlvl~aV~GVqsQt-----~tV~rQ~~ry~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  105 RINIIDTPGHVD-FTF-----EVERALRVLDG---AVLVLDAVAGVESQT-----ETVWRQMKRYNVPRICFINKMDRMG  170 (721)
T ss_pred             eeEEecCCCcee-EEE-----EehhhhhhccC---eEEEEEcccceehhh-----HHHHHHHHhcCCCeEEEEehhhhcC
Confidence            458999999998 442     22233432332   455677754322222     2234568889999999999999987


Q ss_pred             c
Q 026584          148 N  148 (236)
Q Consensus       148 ~  148 (236)
                      .
T Consensus       171 a  171 (721)
T KOG0465|consen  171 A  171 (721)
T ss_pred             C
Confidence            4

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=84.07  E-value=2.4  Score=38.77  Aligned_cols=76  Identities=18%  Similarity=0.175  Sum_probs=47.0

Q ss_pred             CCCEEEEeCCC------ceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE
Q 026584           66 DDDYLVFDCPG------QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI  139 (236)
Q Consensus        66 ~~~Yil~D~PG------QiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV  139 (236)
                      ..+|.++|.||      --|+=+  +....--.++....--+++..|+|+..--.|.+...     .+..=+.++|...|
T Consensus       182 ~~~~~~vDlPG~~~a~y~~~~~~--d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~-----i~~~ge~~VP~t~v  254 (320)
T KOG2486|consen  182 GKSWYEVDLPGYGRAGYGFELPA--DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPE-----IAWLGENNVPMTSV  254 (320)
T ss_pred             cceEEEEecCCcccccCCccCcc--hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHH-----HHHHhhcCCCeEEe
Confidence            35799999999      112111  112222233332222256677889877666666553     44556789999999


Q ss_pred             ecccccccc
Q 026584          140 LSKMDLVTN  148 (236)
Q Consensus       140 lsK~DLl~~  148 (236)
                      +||||-.+.
T Consensus       255 fTK~DK~k~  263 (320)
T KOG2486|consen  255 FTKCDKQKK  263 (320)
T ss_pred             eehhhhhhh
Confidence            999998653

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=83.81  E-value=3.8  Score=44.05  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=52.0

Q ss_pred             CCEEEEeCCCceeeeecc--------chHHHHHHHHhh----CCCceEEEEeecCCCcc--chh------hHHHHHHHHH
Q 026584           67 DDYLVFDCPGQIELFTHV--------PVLRNFVDHLKS----RNFNVCAVYLLDSQFIT--DVT------KFISGCMASL  126 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~--------~~~~~iv~~L~~----~~~~~~~V~LiD~~~~~--dp~------~~is~~l~sl  126 (236)
                      ++-|++||+|   -|+..        ..-..+++.|++    ...+ -+|..+|..-..  ++.      .-+-.-|.-+
T Consensus       161 ~~avliDtaG---~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~pln-Gvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el  236 (1169)
T TIGR03348       161 DEAVLIDTAG---RYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLN-GVVVTVSLADLLTADPAERKAHARAIRQRLQEL  236 (1169)
T ss_pred             CCEEEEcCCC---ccccCCCcccccHHHHHHHHHHHHHhCCCCCCC-eEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            3569999999   45433        236678888863    2333 345556664432  332      3555566677


Q ss_pred             HHHhhcCCCEEEEeccccccc
Q 026584          127 SAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus       127 s~m~~l~lP~InVlsK~DLl~  147 (236)
                      ...+...+|+..|+||||++.
T Consensus       237 ~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       237 REQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHhCCCCCEEEEEecchhhc
Confidence            888889999999999999995

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=83.61  E-value=6.1  Score=37.73  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=36.7

Q ss_pred             CCCEEEEeCCCceeeeeccch--HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPV--LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      +.++|||||||.    .+.+.  +..+-+.+.......-+..++++..-  +..+-. .   ....-.+++ .=.|+||+
T Consensus       299 ~~DlVlIDt~G~----~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~-~---~~~f~~~~~-~~vI~TKl  367 (424)
T PRK05703        299 DCDVILIDTAGR----SQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKD-I---YKHFSRLPL-DGLIFTKL  367 (424)
T ss_pred             CCCEEEEeCCCC----CCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHH-H---HHHhCCCCC-CEEEEecc
Confidence            568999999994    33332  22232333212233445566776543  222111 1   111122333 34679999


Q ss_pred             ccccchh
Q 026584          144 DLVTNKK  150 (236)
Q Consensus       144 DLl~~~~  150 (236)
                      |-....+
T Consensus       368 Det~~~G  374 (424)
T PRK05703        368 DETSSLG  374 (424)
T ss_pred             ccccccc
Confidence            9865543

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=83.46  E-value=1  Score=39.18  Aligned_cols=14  Identities=36%  Similarity=0.802  Sum_probs=11.1

Q ss_pred             CCCEEEEeCCCcee
Q 026584           66 DDDYLVFDCPGQIE   79 (236)
Q Consensus        66 ~~~Yil~D~PGQiE   79 (236)
                      +-+|+|+|||+..-
T Consensus       119 ~yD~iiID~pp~l~  132 (259)
T COG1192         119 DYDYIIIDTPPSLG  132 (259)
T ss_pred             CCCEEEECCCCchh
Confidence            45899999999553

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=83.45  E-value=5.3  Score=35.92  Aligned_cols=75  Identities=13%  Similarity=0.293  Sum_probs=40.3

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      +.+++||||||..  +.....+..+.+.+.... +.-+++++++.... +-...+..       +-.++ +.=.|+||.|
T Consensus       154 ~~D~ViIDt~Gr~--~~~~~~l~el~~~~~~~~-~~~~~LVl~a~~~~~d~~~~~~~-------f~~~~-~~~~I~TKlD  222 (270)
T PRK06731        154 RVDYILIDTAGKN--YRASETVEEMIETMGQVE-PDYICLTLSASMKSKDMIEIITN-------FKDIH-IDGIVFTKFD  222 (270)
T ss_pred             CCCEEEEECCCCC--cCCHHHHHHHHHHHhhhC-CCeEEEEEcCccCHHHHHHHHHH-------hCCCC-CCEEEEEeec
Confidence            4589999999963  222333444444442211 22356678876543 33332221       11223 3345689999


Q ss_pred             cccchhH
Q 026584          145 LVTNKKE  151 (236)
Q Consensus       145 Ll~~~~~  151 (236)
                      -..+.+.
T Consensus       223 et~~~G~  229 (270)
T PRK06731        223 ETASSGE  229 (270)
T ss_pred             CCCCccH
Confidence            8776543

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.05  E-value=4.6  Score=35.14  Aligned_cols=32  Identities=9%  Similarity=0.213  Sum_probs=28.6

Q ss_pred             eeEEEeeccCcccHHHHHHHHHHhhcccccCC
Q 026584          192 VSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD  223 (236)
Q Consensus       192 v~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~  223 (236)
                      +-|+-.|++.+.+|+.|++.|-.++..-+..+
T Consensus       160 a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~  191 (221)
T KOG0094|consen  160 AEFIETSAKAGENVKQLFRRIAAALPGMEVLE  191 (221)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHhccCccccc
Confidence            48999999999999999999999998876655

>PLN00023 GTP-binding protein; Provisional

Probab=83.05  E-value=6.5  Score=36.61  Aligned_cols=68  Identities=15%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh------------cCC
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ------------LEL  134 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~------------l~l  134 (236)
                      .-|.||+||-..-.       +.... -.+.. +++++.|..   ++..|-  ..++-.+.....            .++
T Consensus        85 LqIWDTAGqErfrs-------L~~~y-yr~Ad-giILVyDIT---dr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~i  152 (334)
T PLN00023         85 VELWDVSGHERYKD-------CRSLF-YSQIN-GVIFVHDLS---QRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPV  152 (334)
T ss_pred             EEEEECCCChhhhh-------hhHHh-ccCCC-EEEEEEeCC---CHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence            45888898854221       11111 12333 577888854   344443  233333332211            248


Q ss_pred             CEEEEecccccccc
Q 026584          135 PHVNILSKMDLVTN  148 (236)
Q Consensus       135 P~InVlsK~DLl~~  148 (236)
                      |.|.|-||+||..+
T Consensus       153 pIILVGNK~DL~~~  166 (334)
T PLN00023        153 PYIVIGNKADIAPK  166 (334)
T ss_pred             cEEEEEECcccccc
Confidence            99999999999653

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=82.62  E-value=3.2  Score=39.12  Aligned_cols=15  Identities=20%  Similarity=0.182  Sum_probs=12.0

Q ss_pred             CCEEEEeCCCceeee
Q 026584           67 DDYLVFDCPGQIELF   81 (236)
Q Consensus        67 ~~Yil~D~PGQiElf   81 (236)
                      -+|||||||+++-..
T Consensus       235 YD~IlID~pPslg~l  249 (387)
T PHA02519        235 YDIIVIDSAPNLGTG  249 (387)
T ss_pred             CCEEEEECCCCccHH
Confidence            489999999977533

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=82.39  E-value=6.3  Score=36.20  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=39.9

Q ss_pred             CCCEEEEeCCCceeeee-ccchHHHHHHHHhh--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           66 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKS--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      ..+||||||||....=. ....++++.+.+.+  ...+.-+++++|+..  ....+. ..    ....+.--+.-.|+||
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~--g~~~~~-~a----~~f~~~~~~~giIlTK  268 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT--GQNALS-QA----KAFHEAVGLTGIILTK  268 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--ChHHHH-HH----HHHHhhCCCCEEEEEC
Confidence            45899999999644211 11334444443321  122334678899883  222222 11    1111111355678999


Q ss_pred             cccccch
Q 026584          143 MDLVTNK  149 (236)
Q Consensus       143 ~DLl~~~  149 (236)
                      +|-....
T Consensus       269 lD~t~~~  275 (318)
T PRK10416        269 LDGTAKG  275 (318)
T ss_pred             CCCCCCc
Confidence            9965443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=82.32  E-value=8.7  Score=39.60  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             cCCCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           64 YLDDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        64 ~~~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      ..+.++|||||||    -.|++. +..-+..+.....+.-++.++|+..-.  ..+- ...-+.+...-.+ +.=.|+||
T Consensus       261 ~~~~D~VLIDTAG----Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~-~i~~~f~~~~~~~-i~glIlTK  332 (767)
T PRK14723        261 LGDKHLVLIDTVG----MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLN-EVVHAYRHGAGED-VDGCIITK  332 (767)
T ss_pred             hcCCCEEEEeCCC----CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHH-HHHHHHhhcccCC-CCEEEEec
Confidence            3355899999999    333332 223333333233344577888887532  2211 1111111100012 34467999


Q ss_pred             cccccchhH
Q 026584          143 MDLVTNKKE  151 (236)
Q Consensus       143 ~DLl~~~~~  151 (236)
                      .|=..+.+.
T Consensus       333 LDEt~~~G~  341 (767)
T PRK14723        333 LDEATHLGP  341 (767)
T ss_pred             cCCCCCccH
Confidence            998766543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=81.69  E-value=3.5  Score=40.34  Aligned_cols=127  Identities=15%  Similarity=0.104  Sum_probs=77.3

Q ss_pred             ccccCcCHHHHHhhcCCC--------ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeee
Q 026584           20 DIRELISLEDVMEELGLG--------PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELF   81 (236)
Q Consensus        20 DIrd~i~~~dvM~~~~LG--------PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf   81 (236)
                      ||.-.+..-|.|+....|        ||-|...-+|.|.+.=..+.....+.          ...-...|.||-|--|  
T Consensus       251 ~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--  328 (531)
T KOG1191|consen  251 DVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--  328 (531)
T ss_pred             HHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc--
Confidence            333444555677777777        89999999988875311333322221          1123579999999877  


Q ss_pred             eccchHHH-HHHHHh-hCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcC------CCEEEEecccccccc
Q 026584           82 THVPVLRN-FVDHLK-SRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLE------LPHVNILSKMDLVTN  148 (236)
Q Consensus        82 ~~~~~~~~-iv~~L~-~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~------lP~InVlsK~DLl~~  148 (236)
                      ...+..-+ =+++-+ +....=++++++|+.. ++....-++..+-....++...      -|.+.|.||.|+.++
T Consensus       329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            22222211 122222 2222236888999944 3333334566777777777766      899999999999876

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=80.86  E-value=2.4  Score=43.05  Aligned_cols=61  Identities=21%  Similarity=0.396  Sum_probs=37.3

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      =++||||.+-      .+......|...+   .+|.++|+.-  .-+....+       ---+.-.+|.+.|+||+|.+
T Consensus       200 nilDTPGHVn------F~DE~ta~l~~sD---gvVlvvDv~EGVmlntEr~i-------khaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  200 NILDTPGHVN------FSDETTASLRLSD---GVVLVVDVAEGVMLNTERII-------KHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             eeecCCCccc------chHHHHHHhhhcc---eEEEEEEcccCceeeHHHHH-------HHHHhccCcEEEEEehhHHH
Confidence            4799999664      2333344453223   4677788742  22333333       22344689999999999987

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=80.70  E-value=3.4  Score=40.03  Aligned_cols=66  Identities=17%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      .=|.||||.-- |     .-.=-+.|..-+   ++|.+|||..=-.|...=   |+ --|.+| ++|.++.+||.|--.+
T Consensus        83 iNLLDTPGHeD-F-----SEDTYRtLtAvD---sAvMVIDaAKGiE~qT~K---Lf-eVcrlR-~iPI~TFiNKlDR~~r  148 (528)
T COG4108          83 VNLLDTPGHED-F-----SEDTYRTLTAVD---SAVMVIDAAKGIEPQTLK---LF-EVCRLR-DIPIFTFINKLDREGR  148 (528)
T ss_pred             EeccCCCCccc-c-----chhHHHHHHhhh---eeeEEEecccCccHHHHH---HH-HHHhhc-CCceEEEeeccccccC
Confidence            46899999544 2     222223343323   588999998766655422   11 123333 9999999999997654

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=80.69  E-value=4.7  Score=38.20  Aligned_cols=23  Identities=39%  Similarity=0.722  Sum_probs=15.0

Q ss_pred             HHHHhcccC-CCCEEEEeCCCcee
Q 026584           57 LAEELDNYL-DDDYLVFDCPGQIE   79 (236)
Q Consensus        57 l~~~i~~~~-~~~Yil~D~PGQiE   79 (236)
                      |.+.|.... +-+|||||||+..-
T Consensus       241 L~~~L~~~~~~yD~IiIDtpP~l~  264 (405)
T PRK13869        241 VAQAFDEVADDYDVVVIDCPPQLG  264 (405)
T ss_pred             HHHHHHHhhccCCEEEEECCCchh
Confidence            444444431 34899999999664

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=80.46  E-value=7.9  Score=37.27  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=40.4

Q ss_pred             CCCEEEEeCCCceeeeeccch--HHHHHHHHhhC--CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584           66 DDDYLVFDCPGQIELFTHVPV--LRNFVDHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS  141 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~~--~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls  141 (236)
                      ..++|+|||||    +.+++.  +..+-+.+...  ..+.-.++++||..-.+-..-+      ....-.+++. =.|+|
T Consensus       299 ~~D~VLIDTaG----r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~------~~~f~~~~~~-glIlT  367 (432)
T PRK12724        299 GSELILIDTAG----YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV------LKAYESLNYR-RILLT  367 (432)
T ss_pred             CCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH------HHHhcCCCCC-EEEEE
Confidence            55899999999    555443  33333333211  1233467778887654222211      1122223443 45799


Q ss_pred             ccccccchhH
Q 026584          142 KMDLVTNKKE  151 (236)
Q Consensus       142 K~DLl~~~~~  151 (236)
                      |.|=..+.+.
T Consensus       368 KLDEt~~~G~  377 (432)
T PRK12724        368 KLDEADFLGS  377 (432)
T ss_pred             cccCCCCccH
Confidence            9998766543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=80.08  E-value=9.3  Score=36.21  Aligned_cols=76  Identities=13%  Similarity=0.131  Sum_probs=41.0

Q ss_pred             CCCEEEEeCCCceeeeeccchH--HHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVL--RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~--~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      +.++|||||||.    .|++.+  .++-+.+...+.+.-++.++|+..-  +.... ..+   ...-.++ +.=.|+||.
T Consensus       254 ~~DlVLIDTaGr----~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~-~~~---~~~~~~~-~~~~I~TKl  322 (388)
T PRK12723        254 DFDLVLVDTIGK----SPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK-EIF---HQFSPFS-YKTVIFTKL  322 (388)
T ss_pred             CCCEEEEcCCCC----CccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH-HHH---HHhcCCC-CCEEEEEec
Confidence            568999999994    355543  3444444333333346777887654  22211 111   1111123 445679999


Q ss_pred             ccccchhHh
Q 026584          144 DLVTNKKEI  152 (236)
Q Consensus       144 DLl~~~~~l  152 (236)
                      |=..+.+.+
T Consensus       323 Det~~~G~~  331 (388)
T PRK12723        323 DETTCVGNL  331 (388)
T ss_pred             cCCCcchHH
Confidence            987665543

>PRK09602 translation-associated GTPase; Reviewed

Probab=80.01  E-value=4.7  Score=38.17  Aligned_cols=38  Identities=13%  Similarity=0.125  Sum_probs=31.8

Q ss_pred             CCeeEEEeeccCcccHHH-HHHHHHHhhcccccCCCCCC
Q 026584          190 SMVSFMPLDLRKESSIRY-VLSQIDNCIQWGEDADLKIK  227 (236)
Q Consensus       190 ~lv~f~pls~~d~~~i~~-L~~~Id~~~~y~ed~~~~~~  227 (236)
                      +...++|+|+..+.++.. +...+-+.++.++...|.+.
T Consensus       243 ~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~  281 (396)
T PRK09602        243 KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE  281 (396)
T ss_pred             CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence            456789999999999999 88888888888877777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
1yr6_A	262	Pab0955 Crystal Structure : A Gtpase In Apo Form Fr		8e-07

>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From Pyrococcus Abyssi Length = 262

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 4   VNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXX 63
           VNLD   +   Y  ++D+RE +++E++M E G GPNG ++   + L +  +++       
Sbjct: 47  VNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKFNEYLNKILRL 105
Query: 64  XXXXXXXVFDCPGQIELF 81
                  + D PGQ+E F
Sbjct: 106 EKENDYVLIDTPGQMETF 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	1e-55

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score =  177 bits (451), Expect = 1e-55
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 12/224 (5%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
             VNLD   +   Y  ++D+RE +++E++M E G GPNG ++   + L +  +++L + L
Sbjct: 45  AYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKFNEYLNKIL 103

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 121
               ++DY++ D PGQ+E F         +++L         VY+ D + +     +   
Sbjct: 104 RLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYP----LVVYISDPEILKKPNDYCFV 159

Query: 122 CMASLSAMVQLELPHVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAKL 178
              +L   ++L    +  L+K+DL++    ++  + + + +      +L+  M      +
Sbjct: 160 RFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSM---QGLM 216

Query: 179 NKSLIELVDE-YSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 221
              +  ++ E    V  + L  +       + +          D
Sbjct: 217 AYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGD 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.74
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.66
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.57
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.54
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.47
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.46
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.45
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.45
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.41
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.39
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.37
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.36
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.36
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.35
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.34
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.3
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.29
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.28
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.27
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.27
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.23
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.22
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.21
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.21
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.21
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.2
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.19
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.19
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.18
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.18
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.18
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.17
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.17
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.17
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.17
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.17
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.17
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.16
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.15
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.14
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.14
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.14
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.13
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.12
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.12
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.11
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.11
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.1
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.09
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.08
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.07
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.07
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.07
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.07
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.07
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.06
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.06
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.06
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.06
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.05
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.03
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.03
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.03
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.03
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.02
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.02
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.01
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.99
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.99
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.99
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.98
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.98
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.97
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.96
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.96
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.95
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.94
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.93
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.92
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.89
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.89
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.88
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.88
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.1
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.87
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.86
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.85
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.83
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.83
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.81
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.81
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.8
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.8
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.77
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.77
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.76
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.76
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.75
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.75
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.74
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.73
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.7
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.68
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.65
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.65
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.63
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.62
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.6
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.6
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	97.59
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.59
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.56
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.54
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.5
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.48
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.44
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.44
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.43
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.36
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.35
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.35
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.3
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.25
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.24
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.24
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.21
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.19
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.17
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.14
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.12
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.12
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.08
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.06
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.01
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.01
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.97
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.97
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.94
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.9
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.54
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.42
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.34
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.33
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.29
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.24
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.22
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.18
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.01
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.0
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.88
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.83
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	95.8
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.44
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	95.21
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	95.14
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.73
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	94.68
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.6
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.31
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.47
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	92.48
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	92.25
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	92.04
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	91.94
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	91.75
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	91.07
2xxa_A	433	Signal recognition particle protein; protein trans	91.03
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	89.74
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	89.35
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	88.78
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	87.63
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	85.95
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	85.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	84.52
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	81.21
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	80.33

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.92  E-value=2.9e-24  Score=184.85  Aligned_cols=213  Identities=20%  Similarity=0.367  Sum_probs=166.7

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccC-CCCEEEEeCCCcee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIE   79 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~-~~~Yil~D~PGQiE   79 (236)
                      |.+|++||+....+|.+.+|++++++.+++|++ ++||||+++.|++++..+. +|+.+.++... +.+|+|+|||||.+
T Consensus        44 v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~  121 (262)
T 1yrb_A           44 VAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKF-NEYLNKILRLEKENDYVLIDTPGQME  121 (262)
T ss_dssp             EEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHCSEEEEECCSSHH
T ss_pred             EEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHHhhhH-HHHHHHHHHHhhcCCEEEEeCCCccc
Confidence            478999999999999999999999999999998 9999999999998887777 88877776541 23899999999999


Q ss_pred             eeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchh--Hhhhhcc
Q 026584           80 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK--EIEDYLN  157 (236)
Q Consensus        80 lf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~--~l~~~l~  157 (236)
                      .++++..++.+.+.+  .+  .++|+++|+....++..+.+..........+.+.|.+.|+||+|+.+...  ++.+++.
T Consensus       122 ~~~~~~l~~~~~~~~--~~--~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~  197 (262)
T 1yrb_A          122 TFLFHEFGVRLMENL--PY--PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFE  197 (262)
T ss_dssp             HHHHSHHHHHHHHTS--SS--CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHH--hh--ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHh
Confidence            887766566666555  23  57999999998888988887665555556677999999999999986531  2233332


Q ss_pred             ccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584          158 PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGEDA  222 (236)
Q Consensus       158 ~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~ed~  222 (236)
                       +...+...+.. +..++|.++  ++++++++++. ..++|+|+++++++++|+..|.+.+++|+|+
T Consensus       198 -~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~~~  261 (262)
T 1yrb_A          198 -DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGDL  261 (262)
T ss_dssp             -CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             -ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccccCC
Confidence             33333333321 233566665  78888888886 5999999999999999999999999999885

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.74  E-value=6e-08  Score=86.22  Aligned_cols=156  Identities=14%  Similarity=0.194  Sum_probs=93.1

Q ss_pred             ChHHHHHHHHHHHHh-hHHHHHHHhcc----------cC-CCCEEEEeCCCceeeeeccchHHHHHHHHhh--CCCceEE
Q 026584           38 PNGGLIYCMEHLEDN-LDDWLAEELDN----------YL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS--RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n-~~~wl~~~i~~----------~~-~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~--~~~~~~~  103 (236)
                      ||.|.-+-++.|... + .......+.          .. ..+++++|||||.+...++.....+......  .+.. ++
T Consensus        19 ~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD-~i   96 (308)
T 3iev_A           19 PNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD-VI   96 (308)
T ss_dssp             TTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS-EE
T ss_pred             CCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC-EE
Confidence            788888888877642 2 111111111          11 2358999999998754334344444333221  1334 68


Q ss_pred             EEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          104 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       104 V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      ++++|+..-..+...- .+   +..+.+.+.|.+.|+||+|+.+....+...+.                          
T Consensus        97 l~VvD~~~~~~~~~~~-~~---~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~--------------------------  146 (308)
T 3iev_A           97 LFMIDATEGWRPRDEE-IY---QNFIKPLNKPVIVVINKIDKIGPAKNVLPLID--------------------------  146 (308)
T ss_dssp             EEEEETTTBSCHHHHH-HH---HHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH--------------------------
T ss_pred             EEEEeCCCCCCchhHH-HH---HHHHHhcCCCEEEEEECccCCCCHHHHHHHHH--------------------------
Confidence            9999997544443321 11   22333468999999999999833212221111                          


Q ss_pred             HHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCC
Q 026584          184 ELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK  225 (236)
Q Consensus       184 ~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~  225 (236)
                      ++-+.+ ....++|+|+.+++++++|+..|.+.+..++..-|.
T Consensus       147 ~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~  189 (308)
T 3iev_A          147 EIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPE  189 (308)
T ss_dssp             HHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred             HHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence            111233 347899999999999999999999998776544443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.66  E-value=8.6e-07  Score=73.18  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=72.0

Q ss_pred             CCEEEEeCCCceeeeecc---chHHHHH-HHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEec
Q 026584           67 DDYLVFDCPGQIELFTHV---PVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~---~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVls  141 (236)
                      ..+.|+||||..+--...   ...+.++ ..+.....--++++++|+..-.... ..+      +..+.+.+.|.+.|+|
T Consensus        79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~------~~~l~~~~~p~i~v~n  152 (223)
T 4dhe_A           79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRM------IEWFAPTGKPIHSLLT  152 (223)
T ss_dssp             CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH------HHHHGGGCCCEEEEEE
T ss_pred             CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHH------HHHHHhcCCCEEEEEe
Confidence            478999999954321111   1112222 2333222223589999986532222 211      2233347899999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh--hccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li--~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      |+|+.+.. +......                   ++.+.+....  .......++++|+++++++.+++..|.+.+...
T Consensus       153 K~Dl~~~~-~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          153 KCDKLTRQ-ESINALR-------------------ATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CGGGSCHH-HHHHHHH-------------------HHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             ccccCChh-hHHHHHH-------------------HHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            99998654 2221111                   1111111110  112458999999999999999999999887643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.57  E-value=4.5e-07  Score=70.42  Aligned_cols=111  Identities=13%  Similarity=0.147  Sum_probs=69.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .++.++|||||.+........+......- .+.. ++++++|+.. .+.....+..+      ..+.+.|.+.|.||+|+
T Consensus        49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~-~~i~v~d~~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl  120 (161)
T 2dyk_A           49 GRFLLVDTGGLWSGDKWEKKIQEKVDRAL-EDAE-VVLFAVDGRAELTQADYEVAEY------LRRKGKPVILVATKVDD  120 (161)
T ss_dssp             EEEEEEECGGGCSSSSCCHHHHHHHHHHT-TTCS-EEEEEEESSSCCCHHHHHHHHH------HHHHTCCEEEEEECCCS
T ss_pred             ceEEEEECCCCCCccchHHHHHHHHHHHH-HhCC-EEEEEEECCCcccHhHHHHHHH------HHhcCCCEEEEEECccc
Confidence            35789999999874432222333222221 2333 6889999865 33333333222      22368999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+...+..                              ++. .++...|+++|+++++++++++..+-+.+
T Consensus       121 ~~~~~~~~------------------------------~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          121 PKHELYLG------------------------------PLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             GGGGGGCG------------------------------GGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ccchHhHH------------------------------HHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            65421111                              111 34545799999999999999999987754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.54  E-value=2.5e-06  Score=68.18  Aligned_cols=121  Identities=20%  Similarity=0.258  Sum_probs=71.6

Q ss_pred             CCEEEEeCCCceeeeec----cchHHHHHHHH-hhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584           67 DDYLVFDCPGQIELFTH----VPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~----~~~~~~iv~~L-~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls  141 (236)
                      .++.++||||... ..+    +...+.+.... +....--++++++|+......... .  +  ...+...+.|.+.|+|
T Consensus        68 ~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~--~--~~~~~~~~~p~i~v~n  141 (195)
T 3pqc_A           68 SKYYFVDLPGYGY-AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-M--M--VEWMKSLNIPFTIVLT  141 (195)
T ss_dssp             TTEEEEECCCBSS-SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H--H--HHHHHHTTCCEEEEEE
T ss_pred             CcEEEEECCCCcc-ccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-H--H--HHHHHHcCCCEEEEEE
Confidence            4689999999221 111    11122222222 222222468899997643222221 1  1  2223345899999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+|+.+.. +...                       ..+.+.+....++...++++|+++++++++++..|.+.+.
T Consensus       142 K~Dl~~~~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          142 KMDKVKMS-ERAK-----------------------KLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CGGGSCGG-GHHH-----------------------HHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ChhcCChH-HHHH-----------------------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            99997543 2211                       1112223445556689999999999999999999987653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.47  E-value=1.9e-07  Score=81.57  Aligned_cols=116  Identities=18%  Similarity=0.263  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCceeeeecc---chHHHHHHHH-hhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584           66 DDDYLVFDCPGQIELFTHV---PVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS  141 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~---~~~~~iv~~L-~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls  141 (236)
                      ...+.++|||||-++.+.+   .....+.+.. ...+.. ++++++|+...   ....    .-+..+..++.|.|.|+|
T Consensus        49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d-~ii~VvD~~~~---~~~~----~~~~~l~~~~~p~ivv~N  120 (274)
T 3i8s_A           49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD-LLINVVDASNL---ERNL----YLTLQLLELGIPCIVALN  120 (274)
T ss_dssp             SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS-EEEEEEEGGGH---HHHH----HHHHHHHHHTCCEEEEEE
T ss_pred             CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC-EEEEEecCCCh---HHHH----HHHHHHHhcCCCEEEEEE
Confidence            3468999999987755321   1122222222 123444 68999998752   2222    223334457999999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+|+.+.. .+..    +.               .++.    +   .++ ..++|+|+.++++++.|+..|.+.+.
T Consensus       121 K~Dl~~~~-~~~~----~~---------------~~l~----~---~lg-~~~i~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          121 MLDIAEKQ-NIRI----EI---------------DALS----A---RLG-CPVIPLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             CHHHHHHT-TEEE----CH---------------HHHH----H---HHT-SCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred             Cccchhhh-hHHH----HH---------------HHHH----H---hcC-CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            99996533 1110    11               1111    1   112 57999999999999999999988765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.46  E-value=3.1e-07  Score=79.66  Aligned_cols=113  Identities=19%  Similarity=0.369  Sum_probs=69.4

Q ss_pred             CCEEEEeCCCceeeeeccc--hHH-HHHHH-HhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           67 DDYLVFDCPGQIELFTHVP--VLR-NFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~--~~~-~iv~~-L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      ..+.|+|||||-.+..+..  +.. .+.+. +...+.. ++++++|+..   +....    .-+..+..++.|.|.|+||
T Consensus        48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d-~vi~VvDas~---~~~~~----~l~~~l~~~~~pvilv~NK  119 (256)
T 3iby_A           48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYD-CIINVIDACH---LERHL----YLTSQLFELGKPVVVALNM  119 (256)
T ss_dssp             EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCS-EEEEEEEGGG---HHHHH----HHHHHHTTSCSCEEEEEEC
T ss_pred             eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCC-EEEEEeeCCC---chhHH----HHHHHHHHcCCCEEEEEEC
Confidence            3578999999866543210  222 22222 2223444 6899999875   23222    1233445679999999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +|+.+.. ....    +.               .++.+    .+   + +.++|+|+.+++++++|+..|-+.
T Consensus       120 ~Dl~~~~-~~~~----~~---------------~~l~~----~l---g-~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          120 MDIAEHR-GISI----DT---------------EKLES----LL---G-CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHHHHHT-TCEE----CH---------------HHHHH----HH---C-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             hhcCCcC-CcHH----HH---------------HHHHH----Hc---C-CCEEEEECCCCCCHHHHHHHHHhh
Confidence            9997543 1110    11               11111    11   2 589999999999999999999886

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.45  E-value=2.3e-07  Score=84.27  Aligned_cols=119  Identities=19%  Similarity=0.284  Sum_probs=79.4

Q ss_pred             CCEEEEeCCCceee-eeccchHHHHHHHHhhCCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEec
Q 026584           67 DDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiEl-f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVls  141 (236)
                      ..+.|+|||||+|- -.++.....+++.+++.  + ++++++|+...  .+|-.-+..++..+....  ..+.|.+.|+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~--d-~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N  282 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT--R-VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN  282 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC--C-EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhc--c-EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            46899999999883 23444556677777543  3 68999998764  455444444443343322  14899999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |+|+......++                              ++.+.+.. ..++++|+.+++++++|+..|.+.+.-
T Consensus       283 K~Dl~~~~e~~~------------------------------~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          283 KMDMPEAAENLE------------------------------AFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CTTSTTHHHHHH------------------------------HHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CccCCCCHHHHH------------------------------HHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            999974321110                              11111221 678999999999999999999998754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.45  E-value=8.1e-07  Score=83.92  Aligned_cols=112  Identities=13%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||-.      ..+.....+.  +.. ++++++|+..-..+...-..     .....+++|+|.|+||+|+..
T Consensus        74 ~i~iiDtPGh~~------~~~~~~~~~~--~aD-~~ilVvda~~g~~~qt~e~l-----~~~~~~~ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           74 RITLVDAPGHAD------LIRAVVSAAD--IID-LALIVVDAKEGPKTQTGEHM-----LILDHFNIPIIVVITKSDNAG  139 (482)
T ss_dssp             EEEECCCSSHHH------HHHHHHHHTT--SCC-EEEEEEETTTCSCHHHHHHH-----HHHHHTTCCBCEEEECTTSSC
T ss_pred             EEEEEECCChHH------HHHHHHHHHh--hCC-EEEEEEecCCCccHHHHHHH-----HHHHHcCCCEEEEEECCCccc
Confidence            689999999732      2334444442  344 68999998753334433221     123347999999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc---CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY---SMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~---~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .. .++.                       ....+.+++..+   .-..++|+|+.+++++..|+..|.+.++
T Consensus       140 ~~-~~~~-----------------------~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          140 TE-EIKR-----------------------TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HH-HHHH-----------------------HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ch-hHHH-----------------------HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            32 1211                       111122233333   2378999999999999999999999765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.41  E-value=3.7e-06  Score=77.20  Aligned_cols=114  Identities=12%  Similarity=0.183  Sum_probs=72.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCC-CEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~l-P~InVlsK~D  144 (236)
                      ..+.++|||||      ....+.....+.  +.. ++++++|+..-. .+...-  .   +.....++. |.|.|+||+|
T Consensus        75 ~~~~iiDtPGh------~~~~~~~~~~~~--~~D-~~ilVvda~~~~~~~qt~~--~---~~~~~~~~~~~iivviNK~D  140 (403)
T 3sjy_A           75 RRISFIDAPGH------EVLMATMLSGAA--LMD-GAILVVAANEPFPQPQTRE--H---FVALGIIGVKNLIIVQNKVD  140 (403)
T ss_dssp             EEEEEEECCCC------GGGHHHHHHHHT--TCS-EEEEEEETTSCSSCHHHHH--H---HHHHHHHTCCCEEEEEECGG
T ss_pred             ceEEEEECCCc------HHHHHHHHHHHh--hCC-EEEEEEECCCCCCcHHHHH--H---HHHHHHcCCCCEEEEEECcc
Confidence            36899999995      444556666663  344 589999987532 332211  1   112223454 8899999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +.+.. +....                       .+.+.+.+..++  -+.++|+|+.+++++..|+..|.+.+.-
T Consensus       141 l~~~~-~~~~~-----------------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          141 VVSKE-EALSQ-----------------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             GSCHH-HHHHH-----------------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccchH-HHHHH-----------------------HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            97543 22111                       111223333333  3789999999999999999999986643

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.39  E-value=8.3e-07  Score=76.87  Aligned_cols=115  Identities=19%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcC-CCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~-lP~InVlsK~DLl  146 (236)
                      .+.++|||||-.+..++..-...-..+...+.. ++++++|+....       ..+.-...+..++ .|.+.|+||+|+.
T Consensus        51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d-~vi~v~D~~~~~-------~~~~~~~~~~~~~~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNAD-VIVDIVDSTCLM-------RNLFLTLELFEMEVKNIILVLNKFDLL  122 (271)
T ss_dssp             EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS-EEEEEEEGGGHH-------HHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred             eEEEEeCCCccccccCCHHHHHHHHhhhccCCc-EEEEEecCCcch-------hhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence            578999999887655443322222223223444 689999987642       1122233445567 9999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +.. ..    ..+.               ..+.    +.   ++ +.++|+|+.+++++.+++..|.+....
T Consensus       123 ~~~-~~----~~~~---------------~~l~----~~---lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          123 KKK-GA----KIDI---------------KKMR----KE---LG-VPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             HHH-TC----CCCH---------------HHHH----HH---HS-SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             ccc-cc----HHHH---------------HHHH----HH---cC-CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            533 11    1011               1111    11   12 579999999999999999999987654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.37  E-value=3.8e-06  Score=70.24  Aligned_cols=122  Identities=11%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CEEEEeCCCceeeeeccc-h-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhc--CCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVP-V-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL--ELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~-~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l--~lP~InVlsK~  143 (236)
                      .+.|+|||||.+.-.... . ....+..+. ... -++++++|+..-....  ......-+......  +.|.+.|+||+
T Consensus        77 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-~~~-d~~i~v~d~~~~~s~~--~~~~~~~~~~l~~~~~~~piilv~nK~  152 (228)
T 2qu8_A           77 KYQIIDTPGLLDRAFENRNTIEMTTITALA-HIN-GVILFIIDISEQCGLT--IKEQINLFYSIKSVFSNKSIVIGFNKI  152 (228)
T ss_dssp             EEEEEECTTTTTSCGGGCCHHHHHHHHHHH-TSS-EEEEEEEETTCTTSSC--HHHHHHHHHHHHTCC-CCCEEEEEECG
T ss_pred             eEEEEECCCCcCcccchhhhHHHHHHHHhh-ccc-cEEEEEEecccccCcc--hHHHHHHHHHHHHhhcCCcEEEEEeCc
Confidence            578999999965221111 1 011222331 222 3689999985432211  11111112222223  89999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+.... ++..                   ...+   .+.++...++ ...++++|+++++++++++..|-+.+
T Consensus       153 Dl~~~~-~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  203 (228)
T 2qu8_A          153 DKCNMD-SLSI-------------------DNKL---LIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL  203 (228)
T ss_dssp             GGCC---CCCH-------------------HHHH---HHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCch-hhHH-------------------HHHH---HHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence            997543 1110                   0000   1112223333 37899999999999999999887754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.36  E-value=4.1e-06  Score=67.29  Aligned_cols=123  Identities=11%  Similarity=0.015  Sum_probs=65.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+.-.   ..+   ..++  +.. ++++++|+..-...... ..++..+... ..-+.|.+.|+||+|+.
T Consensus        61 ~~~i~Dt~G~~~~~~---~~~---~~~~--~~d-~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           61 RFLMWDIGGQESLRS---SWN---TYYT--NTE-FVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVK  130 (187)
T ss_dssp             EEEEEECCC----CG---GGH---HHHT--TCC-EEEEEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred             EEEEEECCCCHhHHH---HHH---HHhc--CCC-EEEEEEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence            578999999865321   111   2232  344 58899997643222221 1222222111 12589999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCC
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL  224 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~  224 (236)
                      +.. ..        +.+...+..              ..+... -..++++|+++++++++++..|-+.+.......|
T Consensus       131 ~~~-~~--------~~i~~~~~~--------------~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~  184 (187)
T 1zj6_A          131 ECM-TV--------AEISQFLKL--------------TSIKDH-QWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH  184 (187)
T ss_dssp             TCC-CH--------HHHHHHHTG--------------GGCCSS-CEEEEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred             CCC-CH--------HHHHHHhCh--------------hhhcCC-CcEEEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence            532 11        111010100              001111 2689999999999999999999888766544443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.36  E-value=1.6e-05  Score=63.89  Aligned_cols=151  Identities=13%  Similarity=0.111  Sum_probs=79.8

Q ss_pred             CCC-hHHHHHHHHHHHHhh-HHHHHHHhc--------ccCCCCEEEEeCCCceeeeec---cchHHHHHHH-HhhCCCce
Q 026584           36 LGP-NGGLIYCMEHLEDNL-DDWLAEELD--------NYLDDDYLVFDCPGQIELFTH---VPVLRNFVDH-LKSRNFNV  101 (236)
Q Consensus        36 LGP-NGalv~~me~l~~n~-~~wl~~~i~--------~~~~~~Yil~D~PGQiElf~~---~~~~~~iv~~-L~~~~~~~  101 (236)
                      +|+ |.|.-.-++.|..+- ..-......        .. +.++.++||||..+.-..   ....+.+... +.....--
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELK  107 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCC
Confidence            454 556777777776431 011111111        11 346899999992211000   1112222222 22221113


Q ss_pred             EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      ++++++|+..-......   .+  +......+.|.+.|+||+|+.+.. ++...                       ...
T Consensus       108 ~~i~v~d~~~~~~~~~~---~~--~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~-----------------------~~~  158 (195)
T 1svi_A          108 AVVQIVDLRHAPSNDDV---QM--YEFLKYYGIPVIVIATKADKIPKG-KWDKH-----------------------AKV  158 (195)
T ss_dssp             EEEEEEETTSCCCHHHH---HH--HHHHHHTTCCEEEEEECGGGSCGG-GHHHH-----------------------HHH
T ss_pred             EEEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEEECcccCChH-HHHHH-----------------------HHH
Confidence            68999998653332221   11  122234789999999999997644 22110                       011


Q ss_pred             HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.+.......++++|+++++++++++..|-+.+
T Consensus       159 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          159 VRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             HHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            11222223347999999999999999999987765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.35  E-value=1e-06  Score=76.44  Aligned_cols=113  Identities=13%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.|+|||||-.+..++.. ..+. ..+...+.. ++++++|+....   ....    -+.....++.|.+.|+||+|+.
T Consensus        53 ~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~~d-~ii~V~D~t~~~---~~~~----~~~~l~~~~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           53 TINLIDLPGTYSLGYSSID-EKIARDYLLKGDAD-LVILVADSVNPE---QSLY----LLLEILEMEKKVILAMTAIDEA  123 (258)
T ss_dssp             EEEEEECCCCSSCCSSSHH-HHHHHHHHHHSCCS-EEEEEEETTSCH---HHHH----HHHHHHTTTCCEEEEEECHHHH
T ss_pred             EEEEEECCCcCccCCCCHH-HHHHHHHHhhcCCC-EEEEEeCCCchh---hHHH----HHHHHHhcCCCEEEEEECcCCC
Confidence            5799999998765443321 1122 222223444 689999987642   2221    1233445799999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.. .+    ..+.               .++.+       .++ +.++|+|+.+++++++|+..|-+..+
T Consensus       124 ~~~-~i----~~~~---------------~~l~~-------~lg-~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          124 KKT-GM----KIDR---------------YELQK-------HLG-IPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             HHT-TC----CBCH---------------HHHHH-------HHC-SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             Ccc-ch----HHHH---------------HHHHH-------HcC-CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            433 11    1011               11111       122 58999999999999999999988654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.34  E-value=3.2e-06  Score=78.78  Aligned_cols=108  Identities=13%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc-------hhhHHHHHHHHHHHHhhcCCC-EEE
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-------VTKFISGCMASLSAMVQLELP-HVN  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d-------p~~~is~~l~sls~m~~l~lP-~In  138 (236)
                      ..+.|+|||||-.      ..+.....+..  .. ++++++|+..-.-       +...-     .+.....+++| .|.
T Consensus        95 ~~~~iiDTPGh~~------f~~~~~~~~~~--aD-~~ilVVDa~~g~~e~~~~~~~qt~e-----~l~~~~~~~v~~iIv  160 (439)
T 3j2k_7           95 KHFTILDAPGHKS------FVPNMIGGASQ--AD-LAVLVISARKGEFETGFEKGGQTRE-----HAMLAKTAGVKHLIV  160 (439)
T ss_pred             eEEEEEECCChHH------HHHHHHhhHhh--CC-EEEEEEECCCCccccccCCCchHHH-----HHHHHHHcCCCeEEE
Confidence            4689999999643      34555555643  33 5899999865211       22211     12233457999 678


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-----eeEEEeeccCcccHHHH
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-----VSFMPLDLRKESSIRYV  208 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-----v~f~pls~~d~~~i~~L  208 (236)
                      |+||+|+......-                    .++....+.+.+++..+++     +.|+|+|+.+++++.++
T Consensus       161 viNK~Dl~~~~~~~--------------------~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l  215 (439)
T 3j2k_7          161 LINKMDDPTVNWSN--------------------ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ  215 (439)
T ss_pred             EeecCCCcccchHH--------------------HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence            89999996422000                    1122222333344444443     68999999999999983

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.30  E-value=2.5e-06  Score=66.34  Aligned_cols=113  Identities=9%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+..   ...+   ..++..  . ++++++|+..-..... +..++..+.... .-+.|.+.|+||+|+.
T Consensus        52 ~~~l~D~~G~~~~~---~~~~---~~~~~~--d-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1c1y_A           52 MLEILDTAGTEQFT---AMRD---LYMKNG--Q-GFALVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             EEEEEEECSSCSST---THHH---HHHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             EEEEEECCChHHHH---HHHH---HHhccC--C-EEEEEEECCCHHHHHH-HHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence            36799999986532   2222   223222  3 5778888654321111 112222222211 2489999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. ..    .  .+                   .+.++...++...++++|+++++++++++..|-+.+
T Consensus       122 ~~~-~~----~--~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          122 DER-VV----G--KE-------------------QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             GGC-CS----C--HH-------------------HHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccc-cC----C--HH-------------------HHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            532 11    0  00                   001122334457899999999999999999987654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.29  E-value=6e-06  Score=73.26  Aligned_cols=143  Identities=17%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             ChHHHHHHHHHHHHh-hHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHH-HHHHh-h-CCCceEE
Q 026584           38 PNGGLIYCMEHLEDN-LDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLK-S-RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n-~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~i-v~~L~-~-~~~~~~~  103 (236)
                      ||.|.-+-++.|... + .......+.          ....++.++|||||.+   .+..+... ..... . .+.. ++
T Consensus        16 ~nvGKSTLln~l~g~~~-~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~---~~~~l~~~~~~~~~~~l~~ad-~i   90 (301)
T 1wf3_A           16 PNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK---PMDALGEFMDQEVYEALADVN-AV   90 (301)
T ss_dssp             TTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC---CCSHHHHHHHHHHHHHTSSCS-EE
T ss_pred             CCCCHHHHHHHHhCCce-eeecCCCCceeEEEEEEEEeCCcEEEEecCccccc---hhhHHHHHHHHHHHHHHhcCC-EE
Confidence            677788878777642 2 111111111          0123578999999765   22333322 22221 1 2444 68


Q ss_pred             EEeecCCCccchhhHHHHHHHHHHHHhhc--CCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          104 VYLLDSQFITDVTKFISGCMASLSAMVQL--ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       104 V~LiD~~~~~dp~~~is~~l~sls~m~~l--~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      ++++|+..-..+..   ..++  ...-+.  +.|.+.|+||+|+.+....+.           +.+              
T Consensus        91 l~VvD~~~~~~~~~---~~i~--~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-----------~~~--------------  140 (301)
T 1wf3_A           91 VWVVDLRHPPTPED---ELVA--RALKPLVGKVPILLVGNKLDAAKYPEEAM-----------KAY--------------  140 (301)
T ss_dssp             EEEEETTSCCCHHH---HHHH--HHHGGGTTTSCEEEEEECGGGCSSHHHHH-----------HHH--------------
T ss_pred             EEEEECCCCCChHH---HHHH--HHHHhhcCCCCEEEEEECcccCCchHHHH-----------HHH--------------
Confidence            99999864322221   1221  122234  899999999999975441010           000              


Q ss_pred             HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                       .++   ++...++|+|+.++++++.|+..|-+.+..+
T Consensus       141 -~~~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          141 -HEL---LPEAEPRMLSALDERQVAELKADLLALMPEG  174 (301)
T ss_dssp             -HHT---STTSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred             -HHh---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence             011   3456799999999999999999999876443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.28  E-value=1e-05  Score=62.99  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~  143 (236)
                      ..+.++|||||-+.       +.+....- .+.. ++++++|+..   +..|-..  ++..+.. ...-+.|.+.|.||+
T Consensus        44 ~~~~i~Dt~G~~~~-------~~~~~~~~-~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~  111 (164)
T 1r8s_A           44 ISFTVWDVGGQDKI-------RPLWRHYF-QNTQ-GLIFVVDSND---RERVNEAREELMRMLAEDELRDAVLLVFANKQ  111 (164)
T ss_dssp             CEEEEEECCCCGGG-------HHHHHHHT-TTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred             EEEEEEEcCCChhh-------HHHHHHHh-ccCC-EEEEEEECCC---HHHHHHHHHHHHHHHhchhhcCCeEEEEEECc
Confidence            35789999998541       22222221 2344 5788999753   4333222  2211111 112389999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+.+.. ...        .+...+..              ..+.. .-..++++|+++++++++++..|-+.+
T Consensus       112 Dl~~~~-~~~--------~~~~~~~~--------------~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          112 DLPNAM-NAA--------EITDKLGL--------------HSLRH-RNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             TSTTCC-CHH--------HHHHHTTG--------------GGCSS-CCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             CCcCCC-CHH--------HHHHHhCc--------------ccccC-ccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            996532 111        11111100              00111 125799999999999999999987754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.27  E-value=3.3e-06  Score=77.45  Aligned_cols=114  Identities=18%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL  145 (236)
                      ..+.|+|||||.++      .+.....+  .... ++++++|+..-..+...-.     +.....+++|+ |.|+||+|+
T Consensus        66 ~~~~iiDtpG~~~f------~~~~~~~~--~~aD-~~ilVvda~~g~~~qt~e~-----l~~~~~~~vp~iivviNK~Dl  131 (397)
T 1d2e_A           66 RHYAHTDCPGHADY------VKNMITGT--APLD-GCILVVAANDGPMPQTREH-----LLLARQIGVEHVVVYVNKADA  131 (397)
T ss_dssp             CEEEEEECSSHHHH------HHHHHHTS--SCCS-EEEEEEETTTCSCHHHHHH-----HHHHHHTTCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHHH------HHHHHhhH--hhCC-EEEEEEECCCCCCHHHHHH-----HHHHHHcCCCeEEEEEECccc
Confidence            46899999998651      22333333  2344 5899999876433332211     12223479996 789999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCccc----------HHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS----------IRYVLSQ  211 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~----------i~~L~~~  211 (236)
                      ..+...++                       .....+.+++..+++    +.|+|+|+.++.+          +..|+..
T Consensus       132 ~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~  188 (397)
T 1d2e_A          132 VQDSEMVE-----------------------LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDA  188 (397)
T ss_dssp             CSCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHH
T ss_pred             CCCHHHHH-----------------------HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHH
Confidence            75321111                       111222334444553    7899999998663          8999999


Q ss_pred             HHHhhc
Q 026584          212 IDNCIQ  217 (236)
Q Consensus       212 Id~~~~  217 (236)
                      |++.+.
T Consensus       189 l~~~~p  194 (397)
T 1d2e_A          189 VDTYIP  194 (397)
T ss_dssp             HHHHSC
T ss_pred             HHHhCC
Confidence            998665

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.27  E-value=7.3e-06  Score=75.19  Aligned_cols=114  Identities=18%  Similarity=0.330  Sum_probs=71.4

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL  145 (236)
                      .++.|+|||||.++      .+.....+..  .. ++++++|+..-..+...     -.+.....+++| .|.|+||+|+
T Consensus        75 ~~~~iiDtpG~~~f------~~~~~~~~~~--aD-~~ilVvda~~g~~~qt~-----~~l~~~~~~~ip~iivviNK~Dl  140 (405)
T 2c78_A           75 RHYSHVDCPGHADY------IKNMITGAAQ--MD-GAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFMNKVDM  140 (405)
T ss_dssp             CEEEEEECCCSGGG------HHHHHHHHTT--CS-SEEEEEETTTCCCHHHH-----HHHHHHHHTTCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHHH------HHHHHHHHHH--CC-EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEECccc
Confidence            46899999997752      3444555533  34 48899998653333221     112223347999 5789999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCccc-----------------
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS-----------------  204 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~-----------------  204 (236)
                      ..+...++                       .....+.+++..+++    ..++|+|+.++++                 
T Consensus       141 ~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~  197 (405)
T 2c78_A          141 VDDPELLD-----------------------LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVD  197 (405)
T ss_dssp             CCCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHH
T ss_pred             cCcHHHHH-----------------------HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccc
Confidence            75321111                       111122234444553    7899999999987                 


Q ss_pred             -HHHHHHHHHHhhc
Q 026584          205 -IRYVLSQIDNCIQ  217 (236)
Q Consensus       205 -i~~L~~~Id~~~~  217 (236)
                       +..|+..|++.++
T Consensus       198 ~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          198 KIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHhhcC
Confidence             8889999888765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.23  E-value=1.5e-05  Score=72.90  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=69.8

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEec-cc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILS-KM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVls-K~  143 (236)
                      +..+.|+|||||..      ..+.....++.  .. ++++++| ..-..+..--     .+.....+++|+ |.|+| |+
T Consensus        59 ~~~i~iiDtPGh~~------f~~~~~~~~~~--aD-~ailVvd-~~g~~~qt~e-----~~~~~~~~~i~~~ivvvNNK~  123 (370)
T 2elf_A           59 GRNMVFVDAHSYPK------TLKSLITALNI--SD-IAVLCIP-PQGLDAHTGE-----CIIALDLLGFKHGIIALTRSD  123 (370)
T ss_dssp             SSEEEEEECTTTTT------CHHHHHHHHHT--CS-EEEEEEC-TTCCCHHHHH-----HHHHHHHTTCCEEEEEECCGG
T ss_pred             CeEEEEEECCChHH------HHHHHHHHHHH--CC-EEEEEEc-CCCCcHHHHH-----HHHHHHHcCCCeEEEEEEecc
Confidence            34689999999754      33455566643  33 5888999 4322222111     112223578999 99999 99


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEE--eeccC---cccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMP--LDLRK---ESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~p--ls~~d---~~~i~~L~~~Id~~~  216 (236)
                      |+ ... .++.                       ...++.+++..++  .+.++|  +|+.+   +++++.|+..|.+.+
T Consensus       124 Dl-~~~-~~~~-----------------------~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          124 ST-HMH-AIDE-----------------------LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             GS-CHH-HHHH-----------------------HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred             CC-CHH-HHHH-----------------------HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence            99 432 1111                       0112223344443  379999  99999   999999999888765


Q ss_pred             c
Q 026584          217 Q  217 (236)
Q Consensus       217 ~  217 (236)
                      .
T Consensus       179 ~  179 (370)
T 2elf_A          179 E  179 (370)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.22  E-value=3.3e-06  Score=67.66  Aligned_cols=114  Identities=12%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             CEEEEeCCCceeeeeccc--hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVP--VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~--~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||.+......  .+.+....++  +.. ++++++|+..-.....  ..++-.+.-....+.|.|.|.||+|+
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~ad-~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl  127 (172)
T 2gj8_A           53 PLHIIDTAGLREASDEVERIGIERAWQEIE--QAD-RVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADI  127 (172)
T ss_dssp             EEEEEECCCCSCCSSHHHHHHHHHHHHHHH--TCS-EEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred             EEEEEECCCcccchhHHHHHHHHHHHHHHH--hCC-EEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccC
Confidence            478999999976321111  1222233343  233 5788999865333221  11211122222247999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      ....  . .+               .                ......|+++|+++++++++++..|-+.+...+
T Consensus       128 ~~~~--~-~~---------------~----------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  168 (172)
T 2gj8_A          128 TGET--L-GM---------------S----------------EVNGHALIRLSARTGEGVDVLRNHLKQSMGFDT  168 (172)
T ss_dssp             HCCC--C-EE---------------E----------------EETTEEEEECCTTTCTTHHHHHHHHHHHC----
T ss_pred             Ccch--h-hh---------------h----------------hccCCceEEEeCCCCCCHHHHHHHHHHHhhhcc
Confidence            5321  0 00               0                012368999999999999999999998876543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.21  E-value=8.4e-06  Score=65.75  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+..   ....   ..+  .+.. ++++++|+..   +..+-.  .++..+... ...+.|.+.|+||+|
T Consensus        68 ~~~l~Dt~G~~~~~---~~~~---~~~--~~~d-~ii~v~D~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  135 (188)
T 1zd9_A           68 TIKLWDIGGQPRFR---SMWE---RYC--RGVS-AIVYMVDAAD---QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD  135 (188)
T ss_dssp             EEEEEEECCSHHHH---TTHH---HHH--TTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred             EEEEEECCCCHhHH---HHHH---HHH--ccCC-EEEEEEECCC---HHHHHHHHHHHHHHHhCcccCCCCEEEEEECCC
Confidence            46799999986522   1111   123  2344 5889999754   333322  222222111 125899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.... ..        ..+...+..              ..... .-..++++|+++++++++++..|-+.+.
T Consensus       136 l~~~~-~~--------~~~~~~~~~--------------~~~~~-~~~~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          136 LPGAL-DE--------KELIEKMNL--------------SAIQD-REICCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             STTCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             CccCC-CH--------HHHHHHhCh--------------hhhcc-CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            97542 11        111111110              00111 2368999999999999999999887653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.21  E-value=4.9e-06  Score=65.86  Aligned_cols=112  Identities=20%  Similarity=0.248  Sum_probs=65.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||.+. .....-+.+.. .+...+.. ++++++|+...   ..... +   +....+.+.|.|.|.||+|+.
T Consensus        51 ~l~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~~~~-~~i~v~D~~~~---~~~~~-~---~~~~~~~~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           51 KFKVVDLPGVYSL-TANSIDEIIARDYIINEKPD-LVVNIVDATAL---ERNLY-L---TLQLMEMGANLLLALNKMDLA  121 (165)
T ss_dssp             EEEEEECCCCSCS-SSSSHHHHHHHHHHHHHCCS-EEEEEEETTCH---HHHHH-H---HHHHHHTTCCEEEEEECHHHH
T ss_pred             EEEEEECCCcccC-CCcchhHHHHHHHHhcCCCC-EEEEEecCCch---hHhHH-H---HHHHHhcCCCEEEEEEchHhc
Confidence            4789999999873 22211112222 22212344 57889998653   22211 1   112234689999999999985


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ..    ....               .++    +   +.++ ..|+++|+++++++++++..+-+.+
T Consensus       122 ~~~-~~----~~~~---------------~~~----~---~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          122 KSL-GI----EIDV---------------DKL----E---KILG-VKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             HHT-TC----CCCH---------------HHH----H---HHHT-SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             ccc-Ch----hhHH---------------HHH----H---HHhC-CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            432 11    1010               111    1   1122 5799999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.21  E-value=5.8e-06  Score=77.79  Aligned_cols=121  Identities=13%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh--HHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK--FISGCMASLSAMVQLELP-HVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~--~is~~l~sls~m~~l~lP-~InVlsK~  143 (236)
                      ..+.|+|||||-.      ..+.....++  +.. ++++++|+..-...+.  ......-.+.....+++| .|.|+||+
T Consensus       111 ~~~~iiDTPG~~~------f~~~~~~~~~--~aD-~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~  181 (483)
T 3p26_A          111 ANFTIVDAPGHRD------FVPNAIMGIS--QAD-MAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM  181 (483)
T ss_dssp             CEEEEECCCCCGG------GHHHHHHHHT--TCS-EEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred             ceEEEEECCCcHH------HHHHHHHhhh--hCC-EEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence            3689999999843      3445555563  344 5899999865210000  001111112223346765 88899999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcccHHH------------
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSIRY------------  207 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~i~~------------  207 (236)
                      |+.+....                      .+.+....+.+++..++    -+.|+|+|+.+++++.+            
T Consensus       182 Dl~~~~~~----------------------~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~  239 (483)
T 3p26_A          182 DNVDWSQQ----------------------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYN  239 (483)
T ss_dssp             GGGTTCHH----------------------HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCC
T ss_pred             CcccchHH----------------------HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccC
Confidence            99753210                      11111122223333333    37899999999999973            


Q ss_pred             ---HHHHHHHhhcc
Q 026584          208 ---VLSQIDNCIQW  218 (236)
Q Consensus       208 ---L~~~Id~~~~y  218 (236)
                         |+..++.....
T Consensus       240 g~~L~~~L~~i~~~  253 (483)
T 3p26_A          240 GPNLMSTLENAAFK  253 (483)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhh
Confidence               66777776544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.20  E-value=6.2e-06  Score=65.39  Aligned_cols=123  Identities=12%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +.++|||||-+.-.   ..+.   .+  .+.. ++++++|+..   +..+-..   ++..+... .-+.|.+.|+||+|+
T Consensus        55 ~~i~Dt~G~~~~~~---~~~~---~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl  121 (186)
T 1mh1_A           55 LGLWDTAGQEDYDR---LRPL---SY--PQTD-VSLICFSLVS---PASFENVRAKWYPEVRHH-CPNTPIILVGTKLDL  121 (186)
T ss_dssp             EEEECCCCSGGGTT---TGGG---GC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHH
T ss_pred             EEEEECCCCHhHHH---HHHH---hc--cCCc-EEEEEEECCC---hhhHHHHHHHHHHHHHHh-CCCCCEEEEeEcccc
Confidence            45999999854211   1100   11  2333 5788999753   4443332   22222222 228999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .......+.+ .        ......- ..    ....++...++...++++|+.+++++++++..|-+.+..
T Consensus       122 ~~~~~~~~~~-~--------~~~~~~v-~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          122 RDDKDTIEKL-K--------EKKLTPI-TY----PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HTCHHHHHHH-H--------HTTCCCC-CH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cccchhhhhh-c--------ccccccC-CH----HHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            7654111111 0        0000000 00    111123344566799999999999999999999887643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.19  E-value=9.6e-06  Score=63.82  Aligned_cols=110  Identities=11%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHH-HHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASL-SAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sl-s~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+.   +...+..   ++..  . ++++++|+..   +..+  +..++..+ ......+.|.+.|+||+|
T Consensus        58 ~~~~~Dt~G~~~~---~~~~~~~---~~~~--d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  125 (181)
T 2fn4_A           58 RLDILDTAGQEEF---GAMREQY---MRAG--H-GFLLVFAIND---RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD  125 (181)
T ss_dssp             EEEEEECCCTTTT---SCCHHHH---HHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred             EEEEEECCCchhh---HHHHHHH---HhhC--C-EEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            4578999998763   2222222   3222  2 4677888654   3332  22222222 222235899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. ++..      .            ....       +...++ ..++++|+++++++++++..|-+.+
T Consensus       126 l~~~~-~v~~------~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~  170 (181)
T 2fn4_A          126 LESQR-QVPR------S------------EASA-------FGASHH-VAYFEASAKLRLNVDEAFEQLVRAV  170 (181)
T ss_dssp             GGGGC-CSCH------H------------HHHH-------HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccc-ccCH------H------------HHHH-------HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            97533 1100      0            0001       111222 5899999999999999999988765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.19  E-value=8.7e-06  Score=64.93  Aligned_cols=109  Identities=10%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||-+..   ...+   ..++  +.. ++++++|+.   ++..+-...-+-..+.-..+.|.+.|+||+| ..
T Consensus        94 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~~i~v~D~~---~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~  160 (208)
T 3clv_A           94 KFDIWDTAGQERYA---SIVP---LYYR--GAT-CAIVVFDIS---NSNTLDRAKTWVNQLKISSNYIIILVANKID-KN  160 (208)
T ss_dssp             EEEEEECTTGGGCT---TTHH---HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC
T ss_pred             EEEEEECCCcHHHH---HHHH---HHhc--CCC-EEEEEEECC---CHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cc
Confidence            57999999986632   2222   2232  233 589999965   3433322211111222234699999999999 32


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. +.      ..+.                   +.++...++ +.++++|+++++++++++..|-+.+
T Consensus       161 ~~-~~------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          161 KF-QV------DILE-------------------VQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             -C-CS------CHHH-------------------HHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             cc-cC------CHHH-------------------HHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence            21 00      0000                   011222233 4899999999999999999887643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.18  E-value=5.1e-06  Score=64.66  Aligned_cols=111  Identities=15%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-+....   .+   ..++  +.. ++++++|+..-.... .+..++..+.... -+.|.+.|+||+|+.+
T Consensus        55 ~~~l~Dt~G~~~~~~~---~~---~~~~--~~d-~~i~v~d~~~~~s~~-~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  123 (168)
T 1z2a_A           55 RLMLWDTAGQEEFDAI---TK---AYYR--GAQ-ACVLVFSTTDRESFE-AISSWREKVVAEV-GDIPTALVQNKIDLLD  123 (168)
T ss_dssp             EEEEECCTTGGGTTCC---CH---HHHT--TCC-EEEEEEETTCHHHHH-THHHHHHHHHHHH-CSCCEEEEEECGGGGG
T ss_pred             EEEEEcCCCcHhHHHH---HH---HHhc--CCC-EEEEEEECcCHHHHH-HHHHHHHHHHHhC-CCCCEEEEEECcccCc
Confidence            5789999998764321   11   1232  233 578889975422111 1222222222222 4899999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. +.    .  .+            ...       ++...++ ..++++|+++++++++++..|-+.+
T Consensus       124 ~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          124 DS-CI----K--NE------------EAE-------GLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             GC-SS----C--HH------------HHH-------HHHHHHT-CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             cc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHH
Confidence            32 11    0  00            001       1112233 4899999999999999999887643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.18  E-value=1.7e-05  Score=69.43  Aligned_cols=114  Identities=13%  Similarity=0.190  Sum_probs=69.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .++.++|||||-.+-.++ .-..+.. .+...+.. ++++++|+...   .....    -......++.|.|.|+||+|+
T Consensus        49 ~~l~l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d-~vi~V~D~t~~---e~~~~----~~~~l~~~~~p~ilv~NK~Dl  119 (272)
T 3b1v_A           49 KDLEIQDLPGIYSMSPYS-PEAKVARDYLLSQRAD-SILNVVDATNL---ERNLY----LTTQLIETGIPVTIALNMIDV  119 (272)
T ss_dssp             TTEEEEECCCCSCSSCSS-HHHHHHHHHHHTTCCS-EEEEEEEGGGH---HHHHH----HHHHHHHTCSCEEEEEECHHH
T ss_pred             CeEEEEECCCcCccCCCC-hHHHHHHHHHhcCCCC-EEEEEecCCch---HhHHH----HHHHHHhcCCCEEEEEEChhh
Confidence            368999999987653332 1112222 22222344 68899998653   22221    122234479999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ...    .+.               .+|.+    .+   + +.++|+|+.+++++++++..|-+...
T Consensus       120 ~~~~-~~~----~~~---------------~~l~~----~l---g-~~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          120 LDGQ-GKK----INV---------------DKLSY----HL---G-VPVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             HHHT-TCC----CCH---------------HHHHH----HH---T-SCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             CCcC-CcH----HHH---------------HHHHH----Hc---C-CCEEEEEccCCCCHHHHHHHHHHHHh
Confidence            6433 111    111               11111    11   2 57999999999999999999988654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.18  E-value=4e-06  Score=66.40  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +-++|||||-+.-..   .+   ..+  .+.. ++++++|+.   ++..+-..   ++-.+.... -+.|.+.|.||+|+
T Consensus        58 ~~i~Dt~G~~~~~~~---~~---~~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl  124 (182)
T 3bwd_D           58 LGLWDTAGQEDYNRL---RP---LSY--RGAD-VFILAFSLI---SKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDL  124 (182)
T ss_dssp             CEEECCCC-CTTTTT---GG---GGG--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHH
T ss_pred             EEEEECCCChhhhhh---HH---hhc--cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhh
Confidence            459999998653211   11   112  2334 588899965   34443332   222222222 28999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.......  ...       ... .  ..    ....++...++...|+++|+++++++++++..+-+.+
T Consensus       125 ~~~~~~~~~--~~~-------~~~-v--~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          125 RDDKQFFID--HPG-------AVP-I--TT----VQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HTCHHHHHH--C---------CCC-C--CH----HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCcccccc--ccc-------CCC-C--CH----HHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            765421110  000       000 0  00    0111233345657899999999999999999987754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.17  E-value=8.4e-06  Score=63.71  Aligned_cols=115  Identities=12%  Similarity=0.120  Sum_probs=64.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+.   +...+   ..+  .+.. ++++++|+..-...... ..++..+... ...+.|.+.|+||+|+.
T Consensus        52 ~~~~~Dt~G~~~~---~~~~~---~~~--~~~d-~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~  121 (171)
T 1upt_A           52 KFQVWDLGGLTSI---RPYWR---CYY--SNTD-AVIYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDME  121 (171)
T ss_dssp             EEEEEEECCCGGG---GGGGG---GGC--TTCS-EEEEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             EEEEEECCCChhh---hHHHH---HHh--ccCC-EEEEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence            4689999998542   11111   112  2344 58899997543222221 1122111111 11589999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. ...        .+...+..              ......+ ..++++|+++++++++++..+-+.+
T Consensus       122 ~~~-~~~--------~~~~~~~~--------------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          122 QAM-TSS--------EMANSLGL--------------PALKDRK-WQIFKTSATKGTGLDEAMEWLVETL  167 (171)
T ss_dssp             TCC-CHH--------HHHHHHTG--------------GGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCC-CHH--------HHHHHhCc--------------hhccCCc-eEEEECcCCCCcCHHHHHHHHHHHH
Confidence            542 111        11111100              0112222 5899999999999999999987754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.17  E-value=8.2e-06  Score=64.87  Aligned_cols=112  Identities=14%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+       .+.+....- .+.. ++++++|+..-..... +..++..+..... .+.|.+.|+||+|+.
T Consensus        71 ~~~l~Dt~G~~~-------~~~~~~~~~-~~~d-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~  140 (195)
T 3bc1_A           71 HLQLWDTAGLER-------FRSLTTAFF-RDAM-GFLLLFDLTNEQSFLN-VRNWISQLQMHAYSENPDIVLCGNKSDLE  140 (195)
T ss_dssp             EEEEEEECCSGG-------GHHHHHHTT-TTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred             EEEEEeCCCcHH-------HHHHHHHHH-cCCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            478999999843       122222221 2344 5888999754322211 1222222222222 589999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ..    .  .+            ...       ++...++ +.++++|+++++++++++..|-+.+
T Consensus       141 ~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~  183 (195)
T 3bc1_A          141 DQR-AV----K--EE------------EAR-------ELAEKYG-IPYFETSAANGTNISHAIEMLLDLI  183 (195)
T ss_dssp             GGC-CS----C--HH------------HHH-------HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccc-cc----C--HH------------HHH-------HHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            532 11    0  00            001       1111223 4799999999999999999987754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.17  E-value=9.5e-06  Score=62.53  Aligned_cols=108  Identities=13%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~DL  145 (236)
                      +.++|||||-+..   ...+   ..+...  . ++++++|+.   ++..+-  ..++..+..... -+.|.+.|+||+|+
T Consensus        53 ~~~~D~~G~~~~~---~~~~---~~~~~~--~-~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl  120 (166)
T 2ce2_X           53 LDILDTAGQEEYS---AMRD---QYMRTG--E-GFLCVFAIN---NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL  120 (166)
T ss_dssp             EEEEECCCCSSCC---HHHH---HHHHHC--S-EEEEEEETT---CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred             EEEEECCCchhhh---HHHH---HhhccC--C-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence            5789999986532   2121   223232  2 467788865   343332  222222222222 27999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ...       .            ...+       +...++ +.++++|+.+++++++++..|-+.+
T Consensus       121 ~~~~-~~~-------~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          121 AART-VES-------R------------QAQD-------LARSYG-IPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             SCCC-SCH-------H------------HHHH-------HHHHHT-CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             hhcc-cCH-------H------------HHHH-------HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            7532 000       0            0011       112223 4799999999999999999987654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.17  E-value=1.5e-05  Score=73.18  Aligned_cols=113  Identities=11%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL  145 (236)
                      .+.|+|||||..      ..+.....+.  ... ++++++|+..-. .+...-...+     ...++. |.|.|+||+|+
T Consensus        84 ~i~iiDtPGh~~------f~~~~~~~~~--~~D-~~ilVvda~~g~~~~qt~e~l~~-----~~~~~~~~iivviNK~Dl  149 (410)
T 1kk1_A           84 RVSFIDAPGHEA------LMTTMLAGAS--LMD-GAILVIAANEPCPRPQTREHLMA-----LQIIGQKNIIIAQNKIEL  149 (410)
T ss_dssp             EEEEEECSSHHH------HHHHHHHCGG--GCS-EEEEEEETTSCSSCHHHHHHHHH-----HHHHTCCCEEEEEECGGG
T ss_pred             EEEEEECCChHH------HHHHHHhhhh--hCC-EEEEEEECCCCCCChhHHHHHHH-----HHHcCCCcEEEEEECccC
Confidence            589999999643      2233333332  233 589999987432 4444332211     123455 67788999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .... ....                   .+    +.+.+++..+  .-+.++|+|+.+++++..|+..|.+.+.-
T Consensus       150 ~~~~-~~~~-------------------~~----~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          150 VDKE-KALE-------------------NY----RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             SCHH-HHHH-------------------HH----HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCHH-HHHH-------------------HH----HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            7543 1110                   00    1112233332  23789999999999999999999986653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.17  E-value=6.3e-06  Score=64.25  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.   +...+   ..++  +.. ++++++|+..   +..+-  ..++-.+.....-..|.+.|.||+|+
T Consensus        56 ~~~~~Dt~G~~~~---~~~~~---~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl  123 (170)
T 1z0j_A           56 KFLIWDTAGLERF---RALAP---MYYR--GSA-AAIIVYDITK---EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL  123 (170)
T ss_dssp             EEEEEEECCSGGG---GGGTH---HHHT--TCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred             EEEEEcCCCchhh---hcccH---hhCc--CCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcc
Confidence            4679999998431   11111   2232  233 5788899754   33322  22333333322347888889999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. +..   .   +            .    ..   ++...++ ..++++|+++++++++++..|-+.+
T Consensus       124 ~~~~-~v~---~---~------------~----~~---~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          124 TDVR-EVM---E---R------------D----AK---DYADSIH-AIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             GGGC-CSC---H---H------------H----HH---HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cccc-ccC---H---H------------H----HH---HHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            7532 110   0   0            0    00   1112233 6899999999999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.17  E-value=1e-05  Score=66.01  Aligned_cols=120  Identities=9%  Similarity=0.177  Sum_probs=67.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.......      .+  .+.. ++++++|+.   ++..+-..   ++-.+. ...-+.|.+.|+||+|
T Consensus        74 ~l~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~D  140 (201)
T 2gco_A           74 ELALWDTAGQEDYDRLRPL------SY--PDTD-VILMCFSID---SPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKD  140 (201)
T ss_dssp             EEEEECCCCSGGGTTTGGG------GC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHH-HHSTTCCEEEEEECGG
T ss_pred             EEEEEECCCchhHHHHHHH------hc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEecHH
Confidence            4678999998653221111      12  2333 578888865   34443322   211111 1123899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhh-hcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELN-QHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~-~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.........+..         +. ....      .....++...++...|+++|+++++++++++..|-+.
T Consensus       141 l~~~~~~~~~~~~---------~~~~~v~------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  197 (201)
T 2gco_A          141 LRQDEHTRRELAK---------MKQEPVR------SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA  197 (201)
T ss_dssp             GTTCHHHHHHHHT---------TTCCCCC------HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhcCccchhhhcc---------cccCcCC------HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            9865421111100         00 0000      0111133445566689999999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.17  E-value=1.5e-05  Score=63.32  Aligned_cols=109  Identities=14%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      +.++|||||-+...   ..+.   .+...  . ++++++|+..   +..+-  ..++..+.... .-+.|.+.|+||+|+
T Consensus        54 ~~i~Dt~G~~~~~~---~~~~---~~~~~--~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  121 (189)
T 4dsu_A           54 LDILDTAGQEEYSA---MRDQ---YMRTG--E-GFLCVFAINN---TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL  121 (189)
T ss_dssp             EEEEECCCC---CT---THHH---HHHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred             EEEEECCCcHHHHH---HHHH---HHhcC--C-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence            45799999876432   2222   23222  2 4777888653   33322  22222222221 248999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ...       +            ....       +...++ ..++++|+.+++++++++..+-+.+.
T Consensus       122 ~~~~-~~~-------~------------~~~~-------~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~  165 (189)
T 4dsu_A          122 PSRT-VDT-------K------------QAQD-------LARSYG-IPFIETSAKTRQGVDDAFYTLVREIR  165 (189)
T ss_dssp             SSCS-SCH-------H------------HHHH-------HHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccc-cCH-------H------------HHHH-------HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7432 000       0            0011       111222 57999999999999999998877654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.16  E-value=9.4e-06  Score=73.33  Aligned_cols=111  Identities=14%  Similarity=0.085  Sum_probs=64.8

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+|+|+||||.-      .....+   +  .... ++++++|+........+..         -.++.|.+.|+||+|+
T Consensus       171 ~~~~iiiDTpGi~------~~~~~~---~--~~aD-~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl  229 (355)
T 3p32_A          171 GFDVILIETVGVG------QSEVAV---A--NMVD-TFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADG  229 (355)
T ss_dssp             TCCEEEEEECSCS------SHHHHH---H--TTCS-EEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCG
T ss_pred             CCCEEEEeCCCCC------cHHHHH---H--HhCC-EEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCC
Confidence            5689999999921      121111   2  2234 5888999765332221110         1146799999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .+.. ......                   .++...+ ..+.  ..+. ..++|+|+.+++++++|+..|.+.+..
T Consensus       230 ~~~~-~~~~~~-------------------~~l~~~l-~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          230 EHHK-EARLAA-------------------RELSAAI-RLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGHH-HHHHHH-------------------HHHHHHH-HHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             cChh-HHHHHH-------------------HHHHHHH-hhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            6543 121100                   1111111 1111  1122 579999999999999999999887654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.16  E-value=2.1e-05  Score=60.70  Aligned_cols=109  Identities=14%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      +.++|||||-+...   ..   -..++..  . ++++++|+..   +..+  +..++..+.... ..+.|.+.|+||+|+
T Consensus        53 ~~l~D~~G~~~~~~---~~---~~~~~~~--~-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (167)
T 1kao_A           53 LEILDTAGTEQFAS---MR---DLYIKNG--Q-GFILVYSLVN---QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEEEECCCTTCCHH---HH---HHHHHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             EEEEECCCchhhHH---HH---HHHhccC--C-EEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence            67999999865321   11   1223332  3 5788888763   3332  222222222222 248999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. +...      .            ...++       ...++ ..++++|+++++++++++..|-+.+
T Consensus       121 ~~~~-~~~~------~------------~~~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          121 ESER-EVSS------S------------EGRAL-------AEEWG-CPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             GGGC-CSCH------H------------HHHHH-------HHHHT-SCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             cccc-cCCH------H------------HHHHH-------HHHhC-CCEEEecCCCCcCHHHHHHHHHHHH
Confidence            6433 1100      0            00111       11222 4799999999999999999987654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.15  E-value=1.5e-05  Score=62.50  Aligned_cols=110  Identities=13%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+...   ...   ..++.  .. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        64 ~~~~~Dt~G~~~~~~---~~~---~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  131 (179)
T 2y8e_A           64 RLQLWDTAGQERFRS---LIP---SYIRD--ST-VAVVVYDITN---TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL  131 (179)
T ss_dssp             EEEEEEECCSGGGGG---GSH---HHHHT--CS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGG
T ss_pred             EEEEEECCCcHHHHH---HHH---HHhcC--CC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence            468999999765322   111   22322  33 5788999753   3222  223333333333458999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... +..      ..            ...+       ....++ ..++++|+++++++++++..|-+.+
T Consensus       132 ~~~~-~~~------~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          132 SDKR-QVS------TE------------EGER-------KAKELN-VMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             GGGC-CSC------HH------------HHHH-------HHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             cccC-cCC------HH------------HHHH-------HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7532 110      00            0001       111222 5899999999999999999987754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.14  E-value=1.5e-05  Score=62.88  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-++.....      ..+  .+.. ++++++|+..-..+..+-     .+......+.|.+.|+||+|+..
T Consensus        56 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~p~ilv~nK~Dl~~  121 (178)
T 2lkc_A           56 KITFLDTPGHEAFTTMRA------RGA--QVTD-IVILVVAADDGVMPQTVE-----AINHAKAANVPIIVAINKMDKPE  121 (178)
T ss_dssp             EEEESCCCSSSSSSCSCC------SSC--CCCC-EEEEEEETTCCCCHHHHH-----HHHHHGGGSCCEEEEEETTTSSC
T ss_pred             eEEEEECCCCHHHHHHHH------HHH--hhCC-EEEEEEECCCCCcHHHHH-----HHHHHHhCCCCEEEEEECccCCc
Confidence            578999999876433221      011  2233 578888975533333332     12333446899999999999975


Q ss_pred             ch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .. .++...           +.. .           ..+...++. ..++++|+++++++++++..|-+...
T Consensus       122 ~~~~~~~~~-----------~~~-~-----------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          122 ANPDRVMQE-----------LME-Y-----------NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             SCHHHHHHH-----------HTT-T-----------TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHH-----------HHh-c-----------CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence            32 011111           100 0           001122332 78999999999999999999877544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.14  E-value=8.5e-06  Score=64.81  Aligned_cols=108  Identities=12%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHH-HhhcCCCEEEEecccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSA-MVQLELPHVNILSKMDLV  146 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~-m~~l~lP~InVlsK~DLl  146 (236)
                      -++|||||-+...   ..+.   .++.  .. ++++++|+..   +..|  +..++..+.. ....+.|.+.|.||+|+.
T Consensus        69 ~i~Dt~G~~~~~~---~~~~---~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  136 (183)
T 3kkq_A           69 DVLDTAGQEEFSA---MREQ---YMRT--GD-GFLIVYSVTD---KASFEHVDRFHQLILRVKDRESFPMILVANKVDLM  136 (183)
T ss_dssp             EEEECCSCGGGCS---SHHH---HHHH--CS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred             EEEECCCchhhHH---HHHH---HHhc--CC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence            3599999876332   2222   2322  23 5788888754   3333  2223222222 234689999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc-CcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~-d~~~i~~L~~~Id~~~  216 (236)
                      ... ...      .+                   ...++...++ ..++++|++ +++++++++..|-+.+
T Consensus       137 ~~~-~v~------~~-------------------~~~~~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          137 HLR-KVT------RD-------------------QGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             TTC-CSC------HH-------------------HHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             hcc-CcC------HH-------------------HHHHHHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence            532 110      00                   0011222334 679999999 9999999999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.14  E-value=1.1e-05  Score=63.05  Aligned_cols=110  Identities=15%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ...++|||||-+.......      .+  .+.. ++++++|+..   +..+  +..++-.+.....-+.|.+.|+||+|+
T Consensus        56 ~l~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  123 (170)
T 1z08_A           56 NLAIWDTAGQERFHALGPI------YY--RDSN-GAILVYDITD---EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL  123 (170)
T ss_dssp             EEEEEECCCC-------CC------SS--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred             EEEEEECCCcHhhhhhHHH------Hh--ccCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence            3578899998664321111      11  2333 5788899654   3322  233333444444468999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ..    .  .+            ...       ++...++ ..++++|+++++++++++..|-+.+
T Consensus       124 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          124 EKER-HV----S--IQ------------EAE-------SYAESVG-AKHYHTSAKQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            6532 11    0  00            001       1122233 6889999999999999999886643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.13  E-value=7e-06  Score=65.58  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=67.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||.++.... .-..+.. .+...+.. ++++++|+....   ..    ...+....+.+.|.+.|.||+|+.
T Consensus        55 ~~~l~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~-~~i~v~d~~~~~---~~----~~~~~~~~~~~~piilv~nK~Dl~  125 (188)
T 2wjg_A           55 KFKVVDLPGVYSLTANS-IDEIIARDYIINEKPD-LVVNIVDATALE---RN----LYLTLQLMEMGANLLLALNKMDLA  125 (188)
T ss_dssp             EEEEEECCCCSCCSSSS-HHHHHHHHHHHHHCCS-EEEEEEEGGGHH---HH----HHHHHHHHTTTCCEEEEEECHHHH
T ss_pred             EEEEEECCCcCcccccc-HHHHHHHHHHhccCCC-EEEEEecchhHH---HH----HHHHHHHHhcCCCEEEEEEhhhcc
Confidence            46899999997753221 1111211 22212334 578899976422   11    111222334689999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      ... .+.    ...               .++       .+.++ ..++++|+++++++++++..|-+.....
T Consensus       126 ~~~-~~~----~~~---------------~~~-------~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          126 KSL-GIE----IDV---------------DKL-------EKILG-VKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             HHT-TCC----CCH---------------HHH-------HHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             ccc-cch----HHH---------------HHH-------HHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            432 111    011               111       11122 4799999999999999999998876544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.13  E-value=3e-05  Score=59.91  Aligned_cols=110  Identities=12%  Similarity=0.222  Sum_probs=62.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+..   ...+   ..++.  .. ++++++|+..   +..+-  ..++..+..... -+.|.+.|+||+|
T Consensus        53 ~~~l~D~~G~~~~~---~~~~---~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  120 (168)
T 1u8z_A           53 QIDILDTAGQEDYA---AIRD---NYFRS--GE-GFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNKSD  120 (168)
T ss_dssp             EEEEEECCC---CH---HHHH---HHHHH--CS-EEEEEEETTC---HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred             EEEEEECCCcchhH---HHHH---HHhhc--CC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence            46799999976521   1111   22322  23 5788888763   33332  222222222222 3899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. +.    .  .+            ...       +....++ ..++++|+.+++++++++..+-+.+
T Consensus       121 l~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          121 LEDKR-QV----S--VE------------EAK-------NRADQWN-VNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             GGGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccC-cc----C--HH------------HHH-------HHHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            96533 11    0  00            000       1112233 4799999999999999999887654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.12  E-value=7.4e-06  Score=65.76  Aligned_cols=115  Identities=10%  Similarity=0.025  Sum_probs=64.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+.-....      ..+  .+.. ++++++|+..-....... ..+..+... ..-+.|.+.|+||+|+.
T Consensus        67 ~~~~~Dt~G~~~~~~~~~------~~~--~~~d-~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~  136 (189)
T 2x77_A           67 SFEVWDLGGQTGVRPYWR------CYF--SDTD-AVIYVVDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLP  136 (189)
T ss_dssp             EEEEEEECCSSSSCCCCS------SSS--TTCC-EEEEEEETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred             EEEEEECCCCHhHHHHHH------HHh--hcCC-EEEEEEeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence            578999999865322111      011  1334 588999976432222111 111111110 11379999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. ...        .+...+..              +.+... -..++++|+++++++++++..|-+.+
T Consensus       137 ~~~-~~~--------~~~~~~~~--------------~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          137 DAA-SEA--------EIAEQLGV--------------SSIMNR-TWTIVKSSSKTGDGLVEGMDWLVERL  182 (189)
T ss_dssp             TCC-CHH--------HHHHHTTG--------------GGCCSS-CEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCC-CHH--------HHHHHhCh--------------hhccCC-ceEEEEccCCCccCHHHHHHHHHHHH
Confidence            542 111        11111100              011122 25899999999999999999987765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.12  E-value=1.7e-05  Score=62.31  Aligned_cols=112  Identities=13%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-+.   +..   .-..++.  .. ++++++|+..-.... .+..++..+......+.|.+.|+||+|+..
T Consensus        65 ~~~l~Dt~G~~~~---~~~---~~~~~~~--~d-~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  134 (179)
T 1z0f_A           65 KLQIWDTAGQERF---RAV---TRSYYRG--AA-GALMVYDITRRSTYN-HLSSWLTDARNLTNPNTVIILIGNKADLEA  134 (179)
T ss_dssp             EEEEEECTTGGGT---CHH---HHHHHHT--CS-EEEEEEETTCHHHHH-THHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEECCCChHh---hhh---HHHHhcc--CC-EEEEEEeCcCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            4688999997552   111   1223322  33 588899976432221 233344344444446899999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. +.    .  .+            ...       ++...++ +.++++|+++++++++++..+-+.+
T Consensus       135 ~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          135 QR-DV----T--YE------------EAK-------QFAEENG-LLFLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             GC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            32 11    0  00            001       1122233 5899999999999999998876543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.11  E-value=4.1e-06  Score=68.76  Aligned_cols=122  Identities=10%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.......      .+  .+.. ++++++|+..   +..+-..   ++-.+.. ..-+.|.+.|+||+|
T Consensus        74 ~~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D  140 (207)
T 2fv8_A           74 ELALWDTAGQEDYDRLRPL------SY--PDTD-VILMCFSVDS---PDSLENIPEKWVPEVKH-FCPNVPIILVANKKD  140 (207)
T ss_dssp             EEEEEECTTCTTCTTTGGG------GC--TTCC-EEEEEEETTC---HHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGG
T ss_pred             EEEEEECCCcHHHHHHHHh------hc--CCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHH-hCCCCCEEEEEEchh
Confidence            4689999998764321111      12  2333 5788888653   3333322   2211111 112899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... .....+.        .+....- ..    ....++...++...++++|+++++++++++..|-+..
T Consensus       141 l~~~~-~~~~~~~--------~~~~~~v-~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          141 LRSDE-HVRTELA--------RMKQEPV-RT----DDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             GGGCH-HHHHHHH--------HTTCCCC-CH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhccc-cchhhhh--------hcccCCC-CH----HHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            98654 2211111        0100000 00    0111233445666899999999999999999987754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.11  E-value=2.2e-06  Score=70.42  Aligned_cols=121  Identities=12%  Similarity=0.082  Sum_probs=68.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +.++|||||-+.-..   .+   ..+  .+.. ++++++|+.   ++..+-...  +........-+.|.+.|.||+|+.
T Consensus        80 l~i~Dt~G~~~~~~~---~~---~~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  147 (204)
T 4gzl_A           80 LGLWDTAGLEDYDRL---RP---LSY--PQTD-VFLICFSLV---SPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR  147 (204)
T ss_dssp             EEEEEECCSGGGTTT---GG---GGC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred             EEEEECCCchhhHHH---HH---HHh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence            349999998442111   00   011  2334 588889965   444444321  111111112389999999999998


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ......+. ..        +.....- .    .....++...++...|+++|+++++++++++..|-+.
T Consensus       148 ~~~~~~~~-~~--------~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          148 DDKDTIEK-LK--------EKKLTPI-T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             TCHHHHHH-HH--------HTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             cchhhhhh-hh--------ccccccc-c----HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            65421111 10        0000000 0    0112234456677789999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.11  E-value=9.8e-06  Score=65.56  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-   ....   ..++  +.. ++++++|+..   +..+-  ..++..+.....-+.|.+.|+||+|+
T Consensus        73 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~iilV~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl  140 (192)
T 2fg5_A           73 KFLIWDTAGQERFH---SLAP---MYYR--GSA-AAVIVYDITK---QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL  140 (192)
T ss_dssp             EEEEEEECCSGGGG---GGTH---HHHT--TCS-EEEEEEETTC---THHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEcCCCchhhH---hhhH---Hhhc--cCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            46899999976532   1111   2232  333 5788999653   33332  22332222222237999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... +.    .  .+            .       +.++...++ ..++++|+++++++++++..|-+.+.
T Consensus       141 ~~~~-~v----~--~~------------~-------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          141 SDIR-EV----P--LK------------D-------AKEYAESIG-AIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             GGGC-CS----C--HH------------H-------HHHHHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             cccc-cc----C--HH------------H-------HHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            6422 11    0  00            0       111223344 68999999999999999999988664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.11  E-value=2.2e-05  Score=64.27  Aligned_cols=135  Identities=18%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHH---HhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~---m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-++.      ..+....-+ +.. ++++++|+.........+...+.....   ....+.|.+.|.||+|
T Consensus        55 ~~~i~Dt~G~~~~~------~~~~~~~~~-~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D  126 (214)
T 2fh5_B           55 SLTLIDLPGHESLR------FQLLDRFKS-SAR-AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD  126 (214)
T ss_dssp             EEEEEECCCCHHHH------HHHHHHHGG-GEE-EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTT
T ss_pred             EEEEEECCCChhHH------HHHHHHHHh-hCC-EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCC
Confidence            47999999986421      113333212 233 689999986532222222222222211   1234799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhh---h-cchhHHHHHHHHHHH-Hhh----cc-----C-CeeEEEeeccCc------c
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELN---Q-HMAPQFAKLNKSLIE-LVD----EY-----S-MVSFMPLDLRKE------S  203 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~---~-~~~~~~~~l~~~l~~-li~----d~-----~-lv~f~pls~~d~------~  203 (236)
                      +.... .......    .+...+.   . .....-..=...+.+ ++.    .|     . -+.|++.|++++      +
T Consensus       127 l~~~~-~~~~~~~----~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~  201 (214)
T 2fh5_B          127 IAMAK-SAKLIQQ----QLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA  201 (214)
T ss_dssp             STTCC-CHHHHHH----HHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC
T ss_pred             CCCcc-cHHHHHH----HHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc
Confidence            98643 1211111    0101110   0 000000000001111 111    11     1 478999999999      9


Q ss_pred             cHHHHHHHHHHh
Q 026584          204 SIRYVLSQIDNC  215 (236)
Q Consensus       204 ~i~~L~~~Id~~  215 (236)
                      +|++++..|.+.
T Consensus       202 gv~~lf~~l~~~  213 (214)
T 2fh5_B          202 DIQDLEKWLAKI  213 (214)
T ss_dssp             BCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHh
Confidence            999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.11  E-value=1.1e-05  Score=64.70  Aligned_cols=110  Identities=17%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEeccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLVT  147 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl~  147 (236)
                      +.|+|||||-+...       +....- .+.. ++++++|+........ +..++..+..... -+.|.+.|+||+|+..
T Consensus        71 ~~l~Dt~G~~~~~~-------~~~~~~-~~~d-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           71 LDILDTAGQEEYSA-------MRDQYM-RTGE-GFLCVFAINNSKSFAD-INLYREQIKRVKDSDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEECCC------------------C-TTCS-EEEEEEETTCHHHHHH-HHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EEEEECCChHHHHH-------HHHHhh-CcCC-EEEEEEECcCHHHHHH-HHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence            67999999875322       111111 2233 5778888654322221 2222222222221 3799999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.  .      ...            ...       ++...++ +.++++|+.+++++++++..|-+.+
T Consensus       141 ~~--~------~~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  181 (190)
T 3con_A          141 RT--V------DTK------------QAH-------ELAKSYG-IPFIETSAKTRQGVEDAFYTLVREI  181 (190)
T ss_dssp             CC--S------CHH------------HHH-------HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cc--C------CHH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            32  0      000            001       1122333 4799999999999999999887654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.10  E-value=2.4e-05  Score=62.41  Aligned_cols=111  Identities=15%  Similarity=0.189  Sum_probs=65.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc---chhhHHHHHHHHHHHH--hhcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT---DVTKFISGCMASLSAM--VQLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~---dp~~~is~~l~sls~m--~~l~lP~InVlsK  142 (236)
                      .+.|+|||||-++..   ..+   ..+  .+.. ++++++|+..-.   +...|-. +.--+...  ..-+.|.+.|.||
T Consensus        75 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~~i~v~D~~~~~~~~~~~s~~~-l~~~l~~~~~~~~~~piilv~NK  144 (198)
T 3t1o_A           75 RFHLYTVPGQVFYNA---SRK---LIL--RGVD-GIVFVADSAPNRLRANAESMRN-MRENLAEYGLTLDDVPIVIQVNK  144 (198)
T ss_dssp             EEEEEECCSCCSCSH---HHH---HHT--TTCC-EEEEEEECCGGGHHHHHHHHHH-HHHHHHHTTCCTTSSCEEEEEEC
T ss_pred             EEEEEeCCChHHHHH---HHH---HHH--hcCC-EEEEEEECCcchhhHhHHHHHH-HHHHHHhhccccCCCCEEEEEEc
Confidence            368999999875321   111   122  2334 588999987211   1122111 10000000  1148999999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +|+....         ..+                   .+.++...++...++++|+++++++++++..|-+.+
T Consensus       145 ~Dl~~~~---------~~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i  190 (198)
T 3t1o_A          145 RDLPDAL---------PVE-------------------MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV  190 (198)
T ss_dssp             TTSTTCC---------CHH-------------------HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             hhccccc---------CHH-------------------HHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence            9996431         000                   111334456666999999999999999999887643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.09  E-value=1.6e-05  Score=65.27  Aligned_cols=117  Identities=14%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||-+......      ..+  .+.. ++++++|+..-..... +..++-.+.....-+.|.+.|+||+|+.+
T Consensus        62 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (218)
T 4djt_A           62 KFNVWDTAGQEKKAVLKD------VYY--IGAS-GAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIKN  131 (218)
T ss_dssp             EEEEEEECSGGGTSCCCH------HHH--TTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred             EEEEEecCCchhhchHHH------HHh--hcCC-EEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            378999999865332111      112  2334 5788999764322222 22333334444445799999999999975


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccccc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED  221 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed  221 (236)
                      .. +...      .                   ...++.... ...++++|+++++++++++..|-+.+.....
T Consensus       132 ~~-~~~~------~-------------------~~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          132 RQ-KISK------K-------------------LVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             ----CCH------H-------------------HHHHHTTTC-CCEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred             cc-ccCH------H-------------------HHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            43 1100      0                   000112222 2589999999999999999999887655433

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.08  E-value=1.2e-05  Score=64.13  Aligned_cols=113  Identities=12%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+.-       .+.... -.+.. ++++++|+..   +..+-.  .++..+... ...+.|.+.|+||+|
T Consensus        63 ~~~~~Dt~G~~~~~-------~~~~~~-~~~~d-~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  130 (186)
T 1ksh_A           63 KLNIWDVGGQKSLR-------SYWRNY-FESTD-GLIWVVDSAD---RQRMQDCQRELQSLLVEERLAGATLLIFANKQD  130 (186)
T ss_dssp             EEEEEEECCSHHHH-------TTGGGG-CTTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             EEEEEECCCCHhHH-------HHHHHH-hcCCC-EEEEEEECcC---HHHHHHHHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence            46899999985421       111111 12344 5889999754   333322  122211111 124799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. ..        +.+.+.+..              ..+.. .-..++++|+++++++++++..|-+.+
T Consensus       131 l~~~~-~~--------~~~~~~~~~--------------~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          131 LPGAL-SC--------NAIQEALEL--------------DSIRS-HHWRIQGCSAVTGEDLLPGIDWLLDDI  178 (186)
T ss_dssp             STTCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCC-CH--------HHHHHHhCh--------------hhccC-CceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            97542 11        111111100              00111 226899999999999999999987754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.08  E-value=1.4e-05  Score=66.08  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-....      ..+  .+. -++++++|+.   ++..|-...  +........-+.|.+.|.||+|+
T Consensus        83 ~l~l~Dt~G~~~~~~~~~------~~~--~~~-d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  150 (214)
T 2j1l_A           83 HLHIWDTAGQDDYDRLRP------LFY--PDA-SVLLLCFDVT---SPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL  150 (214)
T ss_dssp             EEEEEEC-----------------------CE-EEEEEEEETT---CHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred             EEEEEECCCchhhhHHHH------HHh--ccC-CEEEEEEECc---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence            367999999876422111      112  123 3688889965   455544321  11111112238999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... .....+.        ...... -.+    ....++...++...|+++|+++++++++++..|-+.+
T Consensus       151 ~~~~-~~~~~~~--------~~~~~~-v~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          151 RKDK-SLVNKLR--------RNGLEP-VTY----HRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             GSCH-HHHHHHH--------HTTCCC-CCH----HHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hccc-hhhhhhc--------ccccCc-ccH----HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            8654 2221111        000000 000    1112333455667999999999999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.07  E-value=2.5e-05  Score=63.50  Aligned_cols=113  Identities=13%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+.   +...+.   .++  +.. ++++++|+.   ++..+-..  ++..+.. ...-+.|.+.|+||+|
T Consensus        74 ~~~i~Dt~G~~~~---~~~~~~---~~~--~~d-~iilv~D~~---~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  141 (192)
T 2b6h_A           74 CFTVWDVGGQDKI---RPLWRH---YFQ--NTQ-GLIFVVDSN---DRERVQESADELQKMLQEDELRDAVLLVFANKQD  141 (192)
T ss_dssp             EEEEEECC--------CTTHHH---HHH--TCC-EEEEEEETT---CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             EEEEEECCCCHhH---HHHHHH---Hhc--cCC-EEEEEEECC---CHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence            5689999998652   222222   232  233 578899975   34333322  2111111 1113799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... ...        .+...+..              ..... .-..++++|+++++++++++..|-+.+
T Consensus       142 l~~~~-~~~--------~i~~~~~~--------------~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          142 MPNAM-PVS--------ELTDKLGL--------------QHLRS-RTWYVQATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             STTCC-CHH--------HHHHHTTG--------------GGCSS-CCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred             CCCCC-CHH--------HHHHHhCc--------------ccccC-CceEEEECcCCCcCCHHHHHHHHHHHH
Confidence            96532 111        11111110              00111 226799999999999999999887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.07  E-value=1.6e-05  Score=62.59  Aligned_cols=114  Identities=17%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~  143 (236)
                      .+.++|||||-+....   .   ...+  .+.. ++++++|+..-.... -+..++..+.....    .+.|.+.|+||+
T Consensus        59 ~~~l~Dt~G~~~~~~~---~---~~~~--~~~d-~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  128 (182)
T 1ky3_A           59 TMQVWDTAGQERFQSL---G---VAFY--RGAD-CCVLVYDVTNASSFE-NIKSWRDEFLVHANVNSPETFPFVILGNKI  128 (182)
T ss_dssp             EEEEECCC----------------CCS--TTCC-EEEEEEETTCHHHHH-THHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred             EEEEEECCCChHhhhh---h---HHHh--hcCC-EEEEEEECCChHHHH-HHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence            4689999997653211   0   0111  2333 578889975422111 12222222332222    689999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+.......    .  ..            ...       ++........++++|+.+++++++++..|-+.+
T Consensus       129 Dl~~~~~~v----~--~~------------~~~-------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          129 DAEESKKIV----S--EK------------SAQ-------ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             TSCGGGCCS----C--HH------------HHH-------HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccccccC----C--HH------------HHH-------HHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            996432100    0  00            001       111223457899999999999999999887643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.07  E-value=1.2e-05  Score=69.80  Aligned_cols=62  Identities=11%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             CCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          133 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       133 ~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      +.|.|.|+||+|+++.. ++..+.                       +.+.+.+..++ +.++++|+.+++++..+...|
T Consensus       144 ~~pvi~V~nK~D~~~~~-e~~~~~-----------------------~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l  198 (274)
T 3t5d_A          144 KVNIIPLIAKADTLTPE-ECQQFK-----------------------KQIMKEIQEHK-IKIYEFPETDDEEENKLVKKI  198 (274)
T ss_dssp             TSCEEEEESSGGGSCHH-HHHHHH-----------------------HHHHHHHHHTT-CCCCCC-----------CHHH
T ss_pred             cCCEEEEEeccCCCCHH-HHHHHH-----------------------HHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHH
Confidence            89999999999997644 222111                       11222333333 467888999999999999999


Q ss_pred             HHhhccc
Q 026584          213 DNCIQWG  219 (236)
Q Consensus       213 d~~~~y~  219 (236)
                      -+.+++.
T Consensus       199 ~~~~p~~  205 (274)
T 3t5d_A          199 KDRLPLA  205 (274)
T ss_dssp             HHTCSEE
T ss_pred             hcCCCcE
Confidence            9988774

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.07  E-value=9.5e-06  Score=65.74  Aligned_cols=121  Identities=12%  Similarity=0.102  Sum_probs=67.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .-++|||||-+.-....      ..+  .+.. ++++++|+.   ++..+-..   ++-.+... .-+.|.+.|.||+|+
T Consensus        70 ~~i~Dt~G~~~~~~~~~------~~~--~~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl  136 (201)
T 2q3h_A           70 LQLCDTAGQDEFDKLRP------LCY--TNTD-IFLLCFSVV---SPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDL  136 (201)
T ss_dssp             EEEEECCCSTTCSSSGG------GGG--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHH-CSSSCEEEEEECGGG
T ss_pred             EEEEECCCCHHHHHHhH------hhc--CCCc-EEEEEEECC---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhh
Confidence            44999999965322111      112  2334 588899975   44444332   22222221 238999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .........+....        ....  . .   ....++...++...|+++|+++++++++++..|-+.+
T Consensus       137 ~~~~~~~~~~~~~~--------~~~v--~-~---~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  193 (201)
T 2q3h_A          137 REDVKVLIELDKCK--------EKPV--P-E---EAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG  193 (201)
T ss_dssp             GGCHHHHHHHHTTT--------CCCC--C-H---HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhchhhhhhhcccc--------cccC--C-H---HHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence            76531111111000        0000  0 0   0111233345666899999999999999999887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.07  E-value=1.4e-05  Score=63.96  Aligned_cols=113  Identities=12%  Similarity=0.024  Sum_probs=62.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+.-.   ..+   ..+  .+.. ++++++|+..-....... .++..+... ..-+.|.+.|+||+|+.
T Consensus        66 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           66 RFLMWDIGGQESLRS---SWN---TYY--TNTE-FVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVK  135 (181)
T ss_dssp             EEEEEEESSSGGGTC---GGG---GGG--TTCC-EEEEEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             EEEEEECCCCHhHHH---HHH---HHh--ccCC-EEEEEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcc
Confidence            578999999855221   111   112  2334 689999976432222211 122111111 13589999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ... ..        +.+...+..              ..... .-..++++|+++++++++++..|-+
T Consensus       136 ~~~-~~--------~~i~~~~~~--------------~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          136 ECM-TV--------AEISQFLKL--------------TSIKD-HQWHIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             TCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred             cCC-CH--------HHHHHHhCc--------------ccccC-CceEEEEccCCCCcCHHHHHHHHHh
Confidence            532 11        111010000              00111 1258999999999999999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.07  E-value=3e-05  Score=63.42  Aligned_cols=110  Identities=16%  Similarity=0.275  Sum_probs=66.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.       +.+. ..+  .+.. ++++++|+.   ++..|-.  .++-.+.....-+.|.+.|.||+|
T Consensus        79 ~l~i~Dt~G~~~~-------~~~~~~~~--~~~d-~iilv~D~~---~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D  145 (201)
T 2hup_A           79 KLQIWDTAGQERF-------RTITQSYY--RSAN-GAILAYDIT---KRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD  145 (201)
T ss_dssp             EEEEECCTTCGGG-------HHHHHHHH--TTCS-EEEEEEETT---BHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             EEEEEECCCcHhH-------HHHHHHHH--hhCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence            5789999998542       1222 223  2344 588899964   4444322  222222222235799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... .+    .  .+                   .+.++...++...++++|+++++++++++..|-+.+
T Consensus       146 l~~~~-~v----~--~~-------------------~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          146 LSELR-EV----S--LA-------------------EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             CGGGC-CS----C--HH-------------------HHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccc-cc----C--HH-------------------HHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            96432 11    0  00                   011222344555899999999999999999887654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.07  E-value=4.3e-05  Score=59.39  Aligned_cols=111  Identities=9%  Similarity=0.157  Sum_probs=63.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh--cCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ--LELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~--l~lP~InVlsK~  143 (236)
                      .+.++|||||-+..   ..   .-..++..  . ++++++|+.   ++..+-  ..++..+.....  -+.|.+.|+||+
T Consensus        52 ~~~~~Dt~G~~~~~---~~---~~~~~~~~--~-~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~  119 (172)
T 2erx_A           52 TLQITDTTGSHQFP---AM---QRLSISKG--H-AFILVYSIT---SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC  119 (172)
T ss_dssp             EEEEEECCSCSSCH---HH---HHHHHHHC--S-EEEEEEETT---CHHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred             EEEEEECCCchhhH---HH---HHHhcccC--C-EEEEEEECc---CHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcc
Confidence            36899999976521   11   11223332  3 578888876   333321  112211211111  379999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+.+.. ++..      .            ....       +...++ ..++++|+.+++++++++..|-+...
T Consensus       120 Dl~~~~-~v~~------~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          120 DESPSR-EVQS------S------------EAEA-------LARTWK-CAFMETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             GGGGGC-CSCH------H------------HHHH-------HHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             cccccc-ccCH------H------------HHHH-------HHHHhC-CeEEEecCCCCcCHHHHHHHHHHHHh
Confidence            997543 1100      0            0001       111223 58999999999999999999987653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.07  E-value=4.7e-05  Score=61.10  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh--------cCCCEE
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ--------LELPHV  137 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~--------l~lP~I  137 (236)
                      .+.|+|||||-+.-.   ..+   ..+  .+.. ++++++|+..   +..|-.  .++..+.....        -+.|.|
T Consensus        64 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~ii~v~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii  131 (199)
T 4bas_A           64 AFTVFDMGGAKKFRG---LWE---TYY--DNID-AVIFVVDSSD---HLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL  131 (199)
T ss_dssp             EEEEEEECCSGGGGG---GGG---GGC--TTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE
T ss_pred             EEEEEECCCCHhHHH---HHH---HHH--hcCC-EEEEEEECCc---HHHHHHHHHHHHHHHhChhhhhcccccCCCCEE
Confidence            578999999855321   111   112  2344 6899999764   333322  22222222211        189999


Q ss_pred             EEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          138 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       138 nVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .|+||+|+.... ...        .+...+.             +..+... .-..++++|+++++++++++..|-+.+
T Consensus       132 lv~NK~Dl~~~~-~~~--------~~~~~~~-------------~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~  187 (199)
T 4bas_A          132 FFANKMDAAGAK-TAA--------ELVEILD-------------LTTLMGD-HPFVIFASNGLKGTGVHEGFSWLQETA  187 (199)
T ss_dssp             EEEECTTSTTCC-CHH--------HHHHHHT-------------HHHHHTT-SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEECcCCCCCC-CHH--------HHHHHhc-------------chhhccC-CeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence            999999997653 111        1111110             0011122 236899999999999999999987754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.07  E-value=1.5e-05  Score=63.92  Aligned_cols=111  Identities=14%  Similarity=0.251  Sum_probs=66.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+...   ..   -..++  +.. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        66 ~~~i~Dt~G~~~~~~---~~---~~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl  133 (196)
T 3tkl_A           66 KLQIWDTAGQERFRT---IT---SSYYR--GAH-GIIVVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  133 (196)
T ss_dssp             EEEEEEECCSGGGCT---TH---HHHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEECCCcHhhhh---hH---HHHHh--hCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            367899999765322   11   12232  233 5888999764   3322  233333333333448999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ....      .            ..    .   ++...++ +.++++|+.+++++++++..+-+.+.
T Consensus       134 ~~~~-~~~~------~------------~~----~---~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~  178 (196)
T 3tkl_A          134 TTKK-VVDY------T------------TA----K---EFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK  178 (196)
T ss_dssp             TTTC-CSCH------H------------HH----H---HHHHHTT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cccc-ccCH------H------------HH----H---HHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7543 1100      0            00    1   1112222 58999999999999999988877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.07  E-value=1.4e-05  Score=63.65  Aligned_cols=125  Identities=16%  Similarity=0.268  Sum_probs=66.8

Q ss_pred             CEEEEeCCCceeeeeccchH----HHHH-HHHhh-CCCceEEEEeecCCCccch-hhHHHH-----HHHHHHHHhhcCCC
Q 026584           68 DYLVFDCPGQIELFTHVPVL----RNFV-DHLKS-RNFNVCAVYLLDSQFITDV-TKFISG-----CMASLSAMVQLELP  135 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~----~~iv-~~L~~-~~~~~~~V~LiD~~~~~dp-~~~is~-----~l~sls~m~~l~lP  135 (236)
                      ++.++||||...+..+...+    +.+. ..+.. .+.-.++++++|+....+. ..+...     -.-........+.|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            57899999965544333222    2221 12222 2222467888887543322 111110     00011222346899


Q ss_pred             EEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHH
Q 026584          136 HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       136 ~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      .+.|.||+|+.....+       ....+...+..                  .|.  -..++++|+++++++++++..|-
T Consensus       125 iilv~nK~Dl~~~~~~-------~~~~~~~~~~~------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  179 (190)
T 2cxx_A          125 TIVAVNKLDKIKNVQE-------VINFLAEKFEV------------------PLSEIDKVFIPISAKFGDNIERLKNRIF  179 (190)
T ss_dssp             EEEEEECGGGCSCHHH-------HHHHHHHHHTC------------------CGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred             eEEEeehHhccCcHHH-------HHHHHHHHhhh------------------hhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence            9999999999754200       00011111100                  000  14689999999999999999988


Q ss_pred             Hhhc
Q 026584          214 NCIQ  217 (236)
Q Consensus       214 ~~~~  217 (236)
                      +.+.
T Consensus       180 ~~~~  183 (190)
T 2cxx_A          180 EVIR  183 (190)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            7653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.06  E-value=1.8e-05  Score=62.43  Aligned_cols=111  Identities=14%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.-   ...+   ..++  +.. ++++++|+.   ++..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        62 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  129 (181)
T 2efe_B           62 KFEIWDTAGQERYH---SLAP---MYYR--GAA-AAIIVFDVT---NQASFERAKKWVQELQAQGNPNMVMALAGNKSDL  129 (181)
T ss_dssp             EEEEEECCCSGGGG---GGTH---HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEeCCCChhhh---hhhH---HHhc--cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence            46899999986522   1111   2232  334 578899965   33333  222332333222248899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... +..      .+            ...       ++...++ +.++++|+++++++++++..|-+.+.
T Consensus       130 ~~~~-~~~------~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          130 LDAR-KVT------AE------------DAQ-------TYAQENG-LFFMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             TTTC-CSC------HH------------HHH-------HHHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             cccc-cCC------HH------------HHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6533 110      00            001       1112233 57999999999999999999987653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.06  E-value=6.2e-06  Score=66.51  Aligned_cols=121  Identities=12%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..|+|||||-+.-.   ..+   ..+  .+.. ++++++|+.   ++..|-..   ++-.+... .-+.|.+.|.||+|+
T Consensus        68 ~~i~D~~G~~~~~~---~~~---~~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl  134 (194)
T 2atx_A           68 LGLYDTAGQEDYDR---LRP---LSY--PMTD-VFLICFSVV---NPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDL  134 (194)
T ss_dssp             EEEECCCCSSSSTT---TGG---GGC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTS
T ss_pred             EEEEECCCCcchhH---HHH---Hhc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhh
Confidence            46899999865321   111   112  2334 578889964   44444332   22222211 128999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ...+.+..        .....- ..    ....++...++...|+++|+++++++++++..|-+.+
T Consensus       135 ~~~~-~~~~~~~~--------~~~~~v-~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          135 RDDP-KTLARLND--------MKEKPI-CV----EQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             TTCH-HHHHHHTT--------TTCCCC-CH----HHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccc-cchhhccc--------ccCccc-CH----HHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            8654 22111110        000000 00    1112333445666899999999999999999987654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.06  E-value=3.4e-05  Score=60.90  Aligned_cols=110  Identities=11%  Similarity=0.202  Sum_probs=64.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+..   ...   -..++.  .. ++++++|+..   +..+-  ..++..+..... .+.|.+.|+||+|
T Consensus        67 ~~~l~Dt~G~~~~~---~~~---~~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  134 (187)
T 2a9k_A           67 QIDILDTAGQEDYA---AIR---DNYFRS--GE-GFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNKSD  134 (187)
T ss_dssp             EEEEEECCCTTCCH---HHH---HHHHHH--CS-EEEEEEETTC---HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred             EEEEEECCCCcccH---HHH---HHHhcc--CC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            46799999986532   111   122322  23 5788888753   33322  222222222222 3899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... +.    .  ..                   .+.++...++ ..++++|+++++++++++..|-+.+
T Consensus       135 l~~~~-~~----~--~~-------------------~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (187)
T 2a9k_A          135 LEDKR-QV----S--VE-------------------EAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI  179 (187)
T ss_dssp             GGGGC-CS----C--HH-------------------HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccC-cc----C--HH-------------------HHHHHHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            96532 11    0  00                   0011222334 4899999999999999999887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.06  E-value=1.2e-05  Score=65.79  Aligned_cols=119  Identities=15%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+-|+|||||-+.-....      ..+  .+.. ++++++|+.   ++..|-..   ++-.+.... -+.|.+.|.||+|
T Consensus        58 ~~~i~Dt~G~~~~~~~~~------~~~--~~~d-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D  124 (212)
T 2j0v_A           58 NLGLWDTAGQEDYSRLRP------LSY--RGAD-IFVLAFSLI---SKASYENVLKKWMPELRRFA-PNVPIVLVGTKLD  124 (212)
T ss_dssp             EEEEECCCCCCCCCC--C------GGG--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHH
T ss_pred             EEEEEECCCcHHHHHHHH------hhc--cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHH
Confidence            468999999965322111      112  2334 578889965   44444332   222222221 2899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +......... -. .      .+   .       .....++...++...|+++|+.+++++++++..|-+.+.
T Consensus       125 l~~~~~~~~~-~~-~------~v---~-------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          125 LRDDKGYLAD-HT-N------VI---T-------STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             HHTCHHHHHT-CS-S------CC---C-------HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhCcccccc-cc-C------CC---C-------HHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence            9765411110 00 0      00   0       001112334456678999999999999999998877553

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.06  E-value=7.1e-06  Score=79.73  Aligned_cols=121  Identities=13%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELP-HVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D  144 (236)
                      .+.|+|||||..      ..+.....+  .+.. ++++++|+..-  ...-.......-.+.....+++| .|.|+||+|
T Consensus       246 ~~~iiDTPG~e~------f~~~~~~~~--~~aD-~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiD  316 (611)
T 3izq_1          246 NFTIVDAPGHRD------FVPNAIMGI--SQAD-MAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD  316 (611)
T ss_dssp             EEEEEECCSSSC------HHHHHTTTS--SCCS-EEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTT
T ss_pred             eEEEEECCCCcc------cHHHHHHHH--hhcC-ceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccc
Confidence            689999999844      223332223  2344 68999998641  00000011111123334456877 777899999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH-------------
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY-------------  207 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~-------------  207 (236)
                      +......                      .+.+....+.+++...+.    +.|+|+|+.+++++..             
T Consensus       317 l~~~~~~----------------------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g  374 (611)
T 3izq_1          317 NVDWSQQ----------------------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNG  374 (611)
T ss_dssp             TTTTCHH----------------------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCS
T ss_pred             ccchhHH----------------------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccC
Confidence            9752200                      111122222233333343    7899999999999984             


Q ss_pred             --HHHHHHHhhccc
Q 026584          208 --VLSQIDNCIQWG  219 (236)
Q Consensus       208 --L~~~Id~~~~y~  219 (236)
                        |+..++......
T Consensus       375 ~~L~~~L~~l~~~~  388 (611)
T 3izq_1          375 PNLMSTLENAAFKI  388 (611)
T ss_dssp             CCHHHHHTTSCCCC
T ss_pred             CcHHHHHHHHhhcc
Confidence              566777665443

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.05  E-value=3e-05  Score=60.97  Aligned_cols=113  Identities=10%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~  143 (236)
                      .+.++|||||-+.       +.+.... -.+.. ++++++|+..-..... +..++-.+.....    .+.|.+.|+||+
T Consensus        57 ~~~i~Dt~G~~~~-------~~~~~~~-~~~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~  126 (177)
T 1wms_A           57 TMQIWDTAGQERF-------RSLRTPF-YRGSD-CCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKI  126 (177)
T ss_dssp             EEEEEECCCCGGG-------HHHHGGG-GTTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred             EEEEEeCCCchhh-------hhhHHHH-HhcCC-EEEEEEECcCHHHHHH-HHHHHHHHHHHccccccCCCcEEEEEECC
Confidence            5789999997542       1222222 12333 5788888754322111 2223333333332    678999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+....  .      ..+            ...       ++........++++|+.+++++++++..|-+.+-
T Consensus       127 Dl~~~~--~------~~~------------~~~-------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          127 DISERQ--V------STE------------EAQ-------AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             TCSSCS--S------CHH------------HHH-------HHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccc--c------CHH------------HHH-------HHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            997322  0      000            000       1112234478999999999999999998877553

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.05  E-value=7.6e-06  Score=75.84  Aligned_cols=146  Identities=12%  Similarity=0.160  Sum_probs=82.9

Q ss_pred             ChHHHHHHHHHHHHhh----HHH---HHHHhc---ccCCCCEEEEeCCCce---------eeeeccchHHHHHHHHhhCC
Q 026584           38 PNGGLIYCMEHLEDNL----DDW---LAEELD---NYLDDDYLVFDCPGQI---------ELFTHVPVLRNFVDHLKSRN   98 (236)
Q Consensus        38 PNGalv~~me~l~~n~----~~w---l~~~i~---~~~~~~Yil~D~PGQi---------Elf~~~~~~~~iv~~L~~~~   98 (236)
                      ||-|.-.-++.+...-    .+.   ..+.+.   ......|.|+|||||.         |-|..    .+-...+... 
T Consensus       184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~----~~~~~~~~~a-  258 (436)
T 2hjg_A          184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV----LRALKAIDRS-  258 (436)
T ss_dssp             TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHH----HHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHH----HHHHHHHHhC-
Confidence            6777777777776321    000   000000   1112358999999984         43321    1122334333 


Q ss_pred             CceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHH
Q 026584           99 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL  178 (236)
Q Consensus        99 ~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l  178 (236)
                       . ++++++|+..-....+.   -+  +......+.|.|.|+||+|+.+.. ..                     .+.++
T Consensus       259 -d-~~llv~D~~~~~s~~~~---~~--~~~~~~~~~~iiiv~NK~Dl~~~~-~~---------------------~~~~~  309 (436)
T 2hjg_A          259 -E-VVAVVLDGEEGIIEQDK---RI--AGYAHEAGKAVVIVVNKWDAVDKD-ES---------------------TMKEF  309 (436)
T ss_dssp             -S-EEEEEEETTTCCCHHHH---HH--HHHHHHTTCEEEEEEECGGGSCCC-TT---------------------HHHHH
T ss_pred             -C-EEEEEEcCCcCCcHHHH---HH--HHHHHHcCCcEEEEEECccCCCcc-hH---------------------HHHHH
Confidence             3 68899998653333321   11  112234689999999999998643 11                     01111


Q ss_pred             HHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          179 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       179 ~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.+.+.+.......++++|+++++++.+++..+.+...
T Consensus       310 ~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          310 EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence            222223333334578999999999999999998887654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.05  E-value=1.4e-05  Score=64.74  Aligned_cols=110  Identities=13%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHh----hcCCCEEEEec
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV----QLELPHVNILS  141 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~----~l~lP~InVls  141 (236)
                      .+.|+|||||-+.-....      ..+  .+.. ++++++|+..   +..+  +..++..+....    ..+.|.+.|+|
T Consensus        58 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n  125 (207)
T 1vg8_A           58 TMQIWDTAGQERFQSLGV------AFY--RGAD-CCVLVFDVTA---PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN  125 (207)
T ss_dssp             EEEEEEECSSGGGSCSCC------GGG--TTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred             EEEEEeCCCcHHHHHhHH------HHH--hCCc-EEEEEEECCC---HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence            468999999865332111      112  2334 5888999753   3322  122222222222    14889999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      |+|+.... ..       .+            ...       ++........++++|++++++++.++..|-+.+
T Consensus       126 K~Dl~~~~-~~-------~~------------~~~-------~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (207)
T 1vg8_A          126 KIDLENRQ-VA-------TK------------RAQ-------AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA  173 (207)
T ss_dssp             CTTSSCCC-SC-------HH------------HHH-------HHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcccc-cC-------HH------------HHH-------HHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99997322 00       00            000       111113346899999999999999999987754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.03  E-value=2.9e-05  Score=68.63  Aligned_cols=148  Identities=14%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             CC-ChHHHHHHHHHHHHh-hHHHHHHHhccc----------CCCCEEEEeCCCce-eeeeccchHHHHHHH-Hhh-CCCc
Q 026584           36 LG-PNGGLIYCMEHLEDN-LDDWLAEELDNY----------LDDDYLVFDCPGQI-ELFTHVPVLRNFVDH-LKS-RNFN  100 (236)
Q Consensus        36 LG-PNGalv~~me~l~~n-~~~wl~~~i~~~----------~~~~Yil~D~PGQi-Elf~~~~~~~~iv~~-L~~-~~~~  100 (236)
                      +| ||.|.-+-++.|... + .....+.+..          ...++.++||||+. +.+   ..+.+.+.. ..+ ...-
T Consensus        14 vG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~~~l~~~   89 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAASSSIGDV   89 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTTSCCCCE
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHHHHHhcC
Confidence            45 455788888887743 2 1111111110          12257899999975 211   112211111 111 1111


Q ss_pred             eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      =++++++|+..++.....+      .....+.+.|.|.|+||+|+.+....+.+                          
T Consensus        90 D~vl~Vvd~~~~~~~~~~i------~~~l~~~~~P~ilvlNK~D~~~~~~~~~~--------------------------  137 (301)
T 1ega_A           90 ELVIFVVEGTRWTPDDEMV------LNKLREGKAPVILAVNKVDNVQEKADLLP--------------------------  137 (301)
T ss_dssp             EEEEEEEETTCCCHHHHHH------HHHHHSSSSCEEEEEESTTTCCCHHHHHH--------------------------
T ss_pred             CEEEEEEeCCCCCHHHHHH------HHHHHhcCCCEEEEEECcccCccHHHHHH--------------------------
Confidence            2578889986633322222      12223468999999999999752211111                          


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      .+.++-+.++...++|+|+.+++++..|+..|-+.+..+
T Consensus       138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~  176 (301)
T 1ega_A          138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA  176 (301)
T ss_dssp             HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence            111223345666899999999999999999999876544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.03  E-value=1.8e-05  Score=62.41  Aligned_cols=111  Identities=15%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.-..      ....++  +.. ++++++|+..   +..+  +..++..+......+.|.+.|+||+|+
T Consensus        61 ~~~~~Dt~G~~~~~~~------~~~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  128 (180)
T 2g6b_A           61 KLQMWDTAGQERFRSV------THAYYR--DAH-ALLLLYDVTN---KASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS  128 (180)
T ss_dssp             EEEEEECCCC--------------CCGG--GCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECCST
T ss_pred             EEEEEeCCCcHHHHHH------HHHHcc--CCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            4678999998653211      111122  233 5788999754   3322  223333333333368999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ...      .+            ...++       ...++ +.++++|+++++++++++..|-+.+.
T Consensus       129 ~~~~-~~~------~~------------~~~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (180)
T 2g6b_A          129 AHER-VVK------RE------------DGEKL-------AKEYG-LPFMETSAKTGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             TSCC-CSC------HH------------HHHHH-------HHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             Cccc-ccC------HH------------HHHHH-------HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7543 110      00            00111       11223 47999999999999999999877653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.03  E-value=1.6e-05  Score=73.13  Aligned_cols=113  Identities=18%  Similarity=0.275  Sum_probs=61.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLEL-PHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL  145 (236)
                      .+.++|||||-.      ..+.....+  .... ++++++|+..- ..+..+-...     ....++. |.|.|+||+|+
T Consensus        82 ~i~iiDtPGh~~------f~~~~~~~~--~~~D-~~ilVvda~~g~~~~qt~e~l~-----~~~~l~~~~iivv~NK~Dl  147 (408)
T 1s0u_A           82 RVSFVDSPGHET------LMATMLSGA--SLMD-GAILVIAANEPCPQPQTKEHLM-----ALEILGIDKIIIVQNKIDL  147 (408)
T ss_dssp             EEEEEECSSHHH------HHHHHHTTC--SCCS-EEEEEEETTSCSSCHHHHHHHH-----HHHHTTCCCEEEEEECTTS
T ss_pred             EEEEEECCCHHH------HHHHHHHhH--hhCC-EEEEEEECCCCCCCchhHHHHH-----HHHHcCCCeEEEEEEccCC
Confidence            589999999743      122222222  2334 58999998742 2444432211     1123565 68899999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .... ....                   .+.    .+.+++..+.  -..++|+|+.++++++.|+..|.+.+.-
T Consensus       148 ~~~~-~~~~-------------------~~~----~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          148 VDEK-QAEE-------------------NYE----QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             SCTT-TTTT-------------------HHH----HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             CCHH-HHHH-------------------HHH----HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            7643 1110                   000    1112333332  3789999999999999999999986653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.03  E-value=3.8e-05  Score=62.16  Aligned_cols=113  Identities=13%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-+.   +..   ....++..  . ++++++|+..-..... +..++..+.....-+.|.+.|+||+|+..
T Consensus        76 ~l~l~Dt~G~~~~---~~~---~~~~~~~~--d-~iilV~D~~~~~s~~~-~~~~~~~i~~~~~~~~piilV~NK~Dl~~  145 (192)
T 2il1_A           76 RLQIWDTAGQERF---NSI---TSAYYRSA--K-GIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET  145 (192)
T ss_dssp             EEEEEEECCSGGG---HHH---HHHHHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEeCCCcHHH---HHH---HHHHhcCC--C-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            4688999997542   111   12233332  3 5788999754322211 22232223333334899999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. ++    .  .+            ..    +   ++...+....++++|+++++++++++..|-+.+
T Consensus       146 ~~-~v----~--~~------------~~----~---~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          146 DR-EI----T--RQ------------QG----E---KFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             GC-CS----C--HH------------HH----H---HHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cc-cc----C--HH------------HH----H---HHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            32 11    0  00            00    1   122233447899999999999999999887643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.02  E-value=4.5e-05  Score=61.68  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      +.++|||||.+    +...   -..++..  . ++++++|+..   +..+-  ..++..+.... .-+.|.+.|.||+|+
T Consensus        78 ~~l~Dt~G~~~----~~~~---~~~~~~~--d-~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl  144 (196)
T 2atv_A           78 MEILDTAGQED----TIQR---EGHMRWG--E-GFVLVYDITD---RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL  144 (196)
T ss_dssp             EEEEECCCCCC----CHHH---HHHHHHC--S-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred             EEEEECCCCCc----ccch---hhhhccC--C-EEEEEEECcC---HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence            67899999987    1111   1223222  3 5788899753   33332  22222222222 258999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~~  216 (236)
                      .... +.    .  ..            ...++       ...++ ..|+++|+.+++ ++++++..|-+.+
T Consensus       145 ~~~~-~v----~--~~------------~~~~~-------~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          145 DHSR-QV----S--TE------------EGEKL-------ATELA-CAFYECSACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             GGGC-CS----C--HH------------HHHHH-------HHHHT-SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHHHH-------HHHhC-CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence            6532 11    0  00            00111       11222 589999999999 9999999887654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.02  E-value=3.7e-05  Score=61.72  Aligned_cols=113  Identities=17%  Similarity=0.149  Sum_probs=66.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh---cCCCEEEEec
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ---LELPHVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~---l~lP~InVls  141 (236)
                      ..+.|+|||||-++-..   .+   ..++  +.. ++++++|+..   +..+-.  .++..+.....   -+.|.+.|+|
T Consensus        67 ~~~~l~Dt~G~~~~~~~---~~---~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~piilv~n  134 (190)
T 2h57_A           67 LSFTVFDMSGQGRYRNL---WE---HYYK--EGQ-AIIFVIDSSD---RLRMVVAKEELDTLLNHPDIKHRRIPILFFAN  134 (190)
T ss_dssp             CEEEEEEECCSTTTGGG---GG---GGGG--GCS-EEEEEEETTC---HHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEE
T ss_pred             EEEEEEECCCCHHHHHH---HH---HHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHhChhhccCCCeEEEEEe
Confidence            35789999998663211   11   1122  233 5889999754   333322  22222222222   4899999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      |+|+.... ..+        .+...+                + +..+.  -..++++|+++++++++++..|.+.+.
T Consensus       135 K~Dl~~~~-~~~--------~~~~~~----------------~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          135 KMDLRDAV-TSV--------KVSQLL----------------C-LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             CTTSTTCC-CHH--------HHHHHH----------------T-GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             CcCcccCC-CHH--------HHHHHh----------------C-hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            99997532 111        110000                0 11221  368999999999999999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.01  E-value=1.8e-05  Score=61.58  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.-.   ..+   ..++  +.. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        53 ~~~l~D~~G~~~~~~---~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  120 (170)
T 1g16_A           53 KLQIWDTAGQERFRT---ITT---AYYR--GAM-GIILVYDITD---ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM  120 (170)
T ss_dssp             EEEEECCTTGGGTSC---CCH---HHHT--TEE-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEeCCCChhhhh---hHH---HHhc--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence            468899999865322   111   1232  233 6888999753   3322  222333333333348999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ..+.  .    .  .+            ...+       +...++ +.++++|+++++++++++..|-+.+.
T Consensus       121 ~~~~--~----~--~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          121 ETRV--V----T--AD------------QGEA-------LAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             TTCC--S----C--HH------------HHHH-------HHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CcCc--c----C--HH------------HHHH-------HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4322  0    0  00            0011       112223 47999999999999999999887653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.00  E-value=1.5e-05  Score=74.27  Aligned_cols=120  Identities=11%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             CCEEEEeCCCceeee-----eccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELF-----THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf-----~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      ..+.|+||||..+--     .......+-+..+...  . ++++++|+..- ......+.      ......+.|.|.|+
T Consensus       243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~a--d-~~llviD~~~~~~~~~~~~~------~~~~~~~~~~ilv~  313 (456)
T 4dcu_A          243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS--E-VVAVVLDGEEGIIEQDKRIA------GYAHEAGKAVVIVV  313 (456)
T ss_dssp             EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHC--S-EEEEEEETTTCCCHHHHHHH------HHHHHTTCEEEEEE
T ss_pred             ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhC--C-EEEEEEeCCCCcCHHHHHHH------HHHHHcCCCEEEEE
Confidence            358999999953210     1111122223344333  3 57888998652 22222222      22334789999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ||+|+.+... .                     ...++.+.+.+.+...+...++++|+++++++.+++..|.+++.
T Consensus       314 NK~Dl~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          314 NKWDAVDKDE-S---------------------TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             ECGGGSCCCS-S---------------------HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EChhcCCCch-H---------------------HHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            9999986431 0                     01111122223333445578999999999999999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.00  E-value=2.4e-05  Score=60.76  Aligned_cols=110  Identities=15%  Similarity=0.205  Sum_probs=64.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.   +...+   ..++  +.. ++++++|+..   +..+-  ..++..+.....-.+|.+.|.||+|+
T Consensus        56 ~~~~~D~~G~~~~---~~~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl  123 (170)
T 1r2q_A           56 KFEIWDTAGQERY---HSLAP---MYYR--GAQ-AAIVVYDITN---EESFARAKNWVKELQRQASPNIVIALSGNKADL  123 (170)
T ss_dssp             EEEEEEECCSGGG---GGGHH---HHHT--TCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEeCCCcHHh---hhhhH---Hhcc--CCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence            4689999998652   22211   2232  334 5788999753   33322  22322232222347889999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+            ...       ++...++ ..++++|+++++++++++..|-+.+
T Consensus       124 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          124 ANKR-AV----D--FQ------------EAQ-------SYADDNS-LLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6432 11    0  00            001       1112223 5899999999999999999987755

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.00  E-value=3.6e-05  Score=59.89  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=57.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      ...++|||||-+.-...   +   ..++  +.. ++++++|..   ++..|-.  .++..+... ..-+.|.+.|.||+|
T Consensus        50 ~~~i~D~~g~~~~~~~~---~---~~~~--~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  117 (166)
T 3q72_A           50 SLMVYDIWEQDGGRWLP---G---HCMA--MGD-AYVIVYSVT---DKGSFEKASELRVQLRRARQTDDVPIILVGNKSD  117 (166)
T ss_dssp             EEEEEECC-----------------------CC-EEEEEEETT---CHHHHHHHHHHHHHHHHCC---CCCEEEEEECTT
T ss_pred             EEEEEECCCCccchhhh---h---hhhh--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence            35789999987632211   1   1121  233 577788865   4444332  222222111 124799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. +...      +            .    ...   +...++ ..++++|+++++++++++..+-+.+
T Consensus       118 l~~~~-~~~~------~------------~----~~~---~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          118 LVRSR-EVSV------D------------E----GRA---CAVVFD-CKFIETSAALHHNVQALFEGVVRQI  162 (166)
T ss_dssp             CCSSC-CSCH------H------------H----HHH---HHHHTT-CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ccccc-ccCH------H------------H----HHH---HHHHhC-CcEEEeccCCCCCHHHHHHHHHHHH
Confidence            97543 1100      0            0    011   111223 5899999999999999999987654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.00  E-value=4.3e-05  Score=59.60  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      ...++|||||-+...   .++.  ..++.  .. ++++++|+..   +..+-.  .++..+..... -+.|.+.|.||+|
T Consensus        52 ~~~i~D~~g~~~~~~---~~~~--~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  120 (169)
T 3q85_A           52 TLIVYDIWEQGDAGG---WLQD--HCLQT--GD-AFLIVFSVTD---RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD  120 (169)
T ss_dssp             EEEEECCCCC-----------C--HHHHH--CS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred             EEEEEECCCccccch---hhhh--hhhcc--CC-EEEEEEECCC---hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcc
Confidence            357899999976432   1111  01222  23 5778888654   333222  22222222111 2899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. +..      .+            .    ..   ++...++ ..++++|+++++++++++..+-+.+
T Consensus       121 l~~~~-~~~------~~------------~----~~---~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          121 LARSR-EVS------LE------------E----GR---HLAGTLS-CKHIETSAALHHNTRELFEGAVRQI  165 (169)
T ss_dssp             CGGGC-CSC------HH------------H----HH---HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhhcc-cCC------HH------------H----HH---HHHHHcC-CcEEEecCccCCCHHHHHHHHHHHH
Confidence            96432 110      00            0    00   1122333 4899999999999999999887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.99  E-value=2.8e-05  Score=60.36  Aligned_cols=113  Identities=15%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.   +...+   ..++  +.. ++++++|+..   +..+-.  .++..+.....-+.|.+.|+||+|+
T Consensus        53 ~~~~~D~~G~~~~---~~~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  120 (170)
T 1ek0_A           53 KFEIWDTAGQERF---ASLAP---XYYR--NAQ-AALVVYDVTK---PQSFIKARHWVKELHEQASKDIIIALVGNKIDX  120 (170)
T ss_dssp             EEEEEEECCSGGG---GGGHH---HHHT--TCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEECCCChhh---hhhhh---hhhc--cCc-EEEEEEecCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc
Confidence            4689999997652   22221   2232  334 5788999753   333322  2222232222348999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... .......                   .....+   ...++ ..++++|+++++++++++..|-+.+
T Consensus       121 ~~~~-~~~~v~~-------------------~~~~~~---~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          121 LQEG-GERKVAR-------------------EEGEKL---AEEKG-LLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             GGSS-CCCCSCH-------------------HHHHHH---HHHHT-CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             cccc-cccCCCH-------------------HHHHHH---HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7643 1110000                   000111   11222 4899999999999999999987654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.99  E-value=5e-05  Score=63.98  Aligned_cols=128  Identities=13%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             CCEEEEeCCCceeeeeccch-HHHHHHHHhh--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPV-LRNFVDHLKS--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      ..+.|+||||..+....... ...+.+.+..  .+.. ++++++|+..........-..+... .-.....|.+.|+||+
T Consensus        78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPH-ALLLVVPLGRYTEEEHKATEKILKM-FGERARSFMILIFTRK  155 (239)
T ss_dssp             EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCS-EEEEEEETTCCSSHHHHHHHHHHHH-HHHHHGGGEEEEEECG
T ss_pred             ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCc-EEEEEeeCCCCCHHHHHHHHHHHHH-hhhhccceEEEEEeCC
Confidence            36799999997654332222 3344444432  2334 6899999875544222111111110 0012346999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC-----cccHHHHHHHHHHhhc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d-----~~~i~~L~~~Id~~~~  217 (236)
                      |++... ++.+++...                   .+.+.++++.++. ++++++...     .+++.+|+..|++.+.
T Consensus       156 D~~~~~-~~~~~i~~~-------------------~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          156 DDLGDT-NLHDYLREA-------------------PEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             GGC--------------------------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcc-cHHHHHHhc-------------------hHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            998755 455444311                   1123344555554 577887764     3789999999988763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.99  E-value=7e-05  Score=60.08  Aligned_cols=113  Identities=16%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-.+   +.   ..-..+  .+.. ++++++|+..   +..+-..  ++..+... -.-+.|.+.|.||+|
T Consensus        61 ~l~i~Dt~G~~~~---~~---~~~~~~--~~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  128 (181)
T 1fzq_A           61 KLNVWDIGGQRKI---RP---YWRSYF--ENTD-ILIYVIDSAD---RKRFEETGQELTELLEEEKLSCVPVLIFANKQD  128 (181)
T ss_dssp             EEEEEECSSCGGG---HH---HHHHHH--TTCS-EEEEEEETTC---GGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred             EEEEEECCCCHHH---HH---HHHHHh--CCCC-EEEEEEECcC---HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcC
Confidence            4689999998542   11   112233  2344 5889999753   3333322  22111111 124799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. ..        +.+...+..              ..+.. .-..++++|+++++++++++..|-+.+
T Consensus       129 l~~~~-~~--------~~~~~~~~~--------------~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          129 LLTAA-PA--------SEIAEGLNL--------------HTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             STTCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cccCC-CH--------HHHHHHhCc--------------hhccC-CceEEEEccCCCCCCHHHHHHHHHHHH
Confidence            97542 11        111111100              00111 126899999999999999999987754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.98  E-value=2.3e-05  Score=62.18  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      +.++|||||-+.-.....      .+  .+.. ++++++|+..   +..+-.  .++..+... -.-+.|.+.|.||+|+
T Consensus        56 ~~l~Dt~G~~~~~~~~~~------~~--~~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  123 (181)
T 3t5g_A           56 LQLVDTAGQDEYSIFPQT------YS--IDIN-GYILVYSVTS---IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL  123 (181)
T ss_dssp             EEEEECCCCCTTCCCCGG------GT--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred             EEEEeCCCchhhhHHHHH------HH--hcCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            479999998764321111      12  2333 5788888763   333322  222222222 2248999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .... ...      .+            .       ..++...++ ..|+++|+++++++.+++..+-+.+.-
T Consensus       124 ~~~~-~~~------~~------------~-------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          124 HMER-VIS------YE------------E-------GKALAESWN-AAFLESSAKENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             TTTC-CSC------HH------------H-------HHHHHHHTT-CEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred             hhcc-eec------HH------------H-------HHHHHHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            6432 110      00            0       001122233 479999999999999999998876543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.98  E-value=2.5e-05  Score=62.03  Aligned_cols=110  Identities=13%  Similarity=0.195  Sum_probs=55.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-....      ..+  .+.. ++++++|+..   +..|-.  .++-.+.....-+.|.+.|.||+|+
T Consensus        58 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  125 (183)
T 2fu5_C           58 KLQIWDTAGQERFRTITT------AYY--RGAM-GIMLVYDITN---EKSFDNIRNWIRNIEEHASADVEKMILGNKCDV  125 (183)
T ss_dssp             EEEEEEC---------CC------TTT--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred             EEEEEcCCCChhhhhhHH------HHH--hcCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccC
Confidence            468999999865321110      111  2333 5888999754   443322  2332232222347999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+.            ..       ++...++ +.++++|+++++++++++..|-+.+
T Consensus       126 ~~~~-~v----~--~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          126 NDKR-QV----S--KER------------GE-------KLALDYG-IKFMETSAKANINVENAFFTLARDI  169 (183)
T ss_dssp             CSCC-CS----C--HHH------------HH-------HHHHHHT-CEEEECCC---CCHHHHHHHHHHHH
T ss_pred             CccC-cC----C--HHH------------HH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7532 11    0  000            01       1112233 5899999999999999999987654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.97  E-value=2.9e-05  Score=61.56  Aligned_cols=115  Identities=16%  Similarity=0.064  Sum_probs=61.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||-+....   .+   ..+  .+. -++++++|+..-..... +..++..+.... ..+.|.+.|+||+|+.
T Consensus        63 ~~~i~Dt~G~~~~~~~---~~---~~~--~~~-d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~  132 (183)
T 1moz_A           63 KLNVWDLGGQTSIRPY---WR---CYY--ADT-AAVIFVVDSTDKDRMST-ASKELHLMLQEEELQDAALLVFANKQDQP  132 (183)
T ss_dssp             EEEEEEEC----CCTT---GG---GTT--TTE-EEEEEEEETTCTTTHHH-HHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred             EEEEEECCCCHhHHHH---HH---HHh--ccC-CEEEEEEECCCHHHHHH-HHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence            4679999998763221   11   112  123 36889999754322222 122222211111 3589999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. ..        +.+.+.+...              .+ ......++++|+++++++++++..|-+.+
T Consensus       133 ~~~-~~--------~~i~~~~~~~--------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          133 GAL-SA--------SEVSKELNLV--------------EL-KDRSWSIVASSAIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             TCC-CH--------HHHHHHTTTT--------------TC-CSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             CCC-CH--------HHHHHHhCcc--------------cc-cCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            532 11        1110111000              00 11225899999999999999999987754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.97  E-value=5.1e-05  Score=70.28  Aligned_cols=104  Identities=17%  Similarity=0.305  Sum_probs=62.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DLl  146 (236)
                      ++.|+|||||..      ..+.....++  ... ++++++|+..-..+...-  .   +.....+++| .|.|+||+|+.
T Consensus       105 ~~~iiDtpGh~~------f~~~~~~~~~--~aD-~~ilVvDa~~g~~~qt~~--~---l~~~~~~~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          105 KFIIADTPGHEQ------YTRNMATGAS--TCD-LAIILVDARYGVQTQTRR--H---SYIASLLGIKHIVVAINKMDLN  170 (434)
T ss_dssp             EEEEEECCCSGG------GHHHHHHHHT--TCS-EEEEEEETTTCSCHHHHH--H---HHHHHHTTCCEEEEEEECTTTT
T ss_pred             eEEEEECCChHH------HHHHHHHHHh--hCC-EEEEEEECCCCCcHHHHH--H---HHHHHHcCCCeEEEEEEcCcCC
Confidence            589999999754      2344455553  344 589999986533232211  1   1122345776 68889999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--C--eeEEEeeccCcccHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--M--VSFMPLDLRKESSIRY  207 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--l--v~f~pls~~d~~~i~~  207 (236)
                      ....+                      .+......+.+++..++  .  ..++|+|+.+++++.+
T Consensus       171 ~~~~~----------------------~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          171 GFDER----------------------VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TSCHH----------------------HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccHH----------------------HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            52200                      11112223334445555  3  7899999999999887

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.97  E-value=1.8e-05  Score=64.46  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||-+.-   ...   ...++  +.. ++++++|+..-..... +..++..+.....-+.|.+.|+||+|+..
T Consensus        70 ~~~l~Dt~G~~~~~---~~~---~~~~~--~~d-~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~  139 (213)
T 3cph_A           70 KLQLWDTAGQERFR---TIT---TAYYR--GAM-GIILVYDVTDERTFTN-IKQWFKTVNEHANDEAQLLLVGNKSDMET  139 (213)
T ss_dssp             EEEEECCTTGGGGT---CCC---HHHHT--TCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred             EEEEEeCCCcHHHH---HHH---HHHhc--cCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            46899999986532   111   12232  333 5888999754221111 22333333333334899999999999943


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ..  .      ..+            ...+       +...++ +.++++|+.+++++++++..|-+.+.
T Consensus       140 ~~--~------~~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  181 (213)
T 3cph_A          140 RV--V------TAD------------QGEA-------LAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ  181 (213)
T ss_dssp             CC--S------CHH------------HHHH-------HHHHHT-CCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             cc--c------CHH------------HHHH-------HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22  1      000            0011       111223 47999999999999999998877543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.96  E-value=1e-05  Score=65.25  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +.++|||||-+.-.....      .+  .+.. ++++++|+.   ++..+-..   ++..+. ...-+.|.+.|.||+|+
T Consensus        73 ~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl  139 (194)
T 3reg_A           73 LHLWDTAGQEEYDRLRPL------SY--ADSD-VVLLCFAVN---NRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDL  139 (194)
T ss_dssp             EEEEEECCSGGGTTTGGG------GC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHH-HHCTTSEEEEEEECGGG
T ss_pred             EEEEECCCcHHHHHHhHh------hc--cCCc-EEEEEEECC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEEChhh
Confidence            379999998653211110      11  2334 578889965   44444432   222222 22237999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ..... -.  ..  .                   ..+.++...++...++++|+++++++++++..+-+.+
T Consensus       140 ~~~~~-~~--~~--~-------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (194)
T 3reg_A          140 RKDGS-DD--VT--K-------------------QEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI  186 (194)
T ss_dssp             CCTTT-TC--CC--H-------------------HHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccCCC-Cc--cc--H-------------------HHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence            75320 00  00  0                   0011223344555699999999999999999887754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.96  E-value=3.6e-05  Score=62.41  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~D  144 (236)
                      ++.++|||||-+.-.   ..+   ..+  .+.. ++++++|+..   +..|-..  ++..+.. ...-+.|.+.|.||+|
T Consensus        68 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  135 (190)
T 1m2o_B           68 KFTTFDLGGHIQARR---LWK---DYF--PEVN-GIVFLVDAAD---PERFDEARVELDALFNIAELKDVPFVILGNKID  135 (190)
T ss_dssp             EEEEEECCCSGGGTT---SGG---GGC--TTCC-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred             EEEEEECCCCHHHHH---HHH---HHH--hcCC-EEEEEEECCC---hHHHHHHHHHHHHHHcchhhcCCCEEEEEECCC
Confidence            468999999865221   111   112  2334 6899999764   3333222  2211111 1125899999999999


Q ss_pred             cccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          145 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.+..  .++.+++.           ...  ...   +   ..+....-..++++|+++++++++++..|-+.
T Consensus       136 l~~~~~~~~~~~~~~-----------~~~--~~~---~---~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          136 APNAVSEAELRSALG-----------LLN--TTG---S---QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             STTCCCHHHHHHHTT-----------CSS--CCC---------CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CcCCCCHHHHHHHhC-----------Ccc--ccc---c---ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            96521  11222111           000  000   0   00123344789999999999999999988653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.96  E-value=3.2e-06  Score=81.87  Aligned_cols=115  Identities=18%  Similarity=0.294  Sum_probs=65.6

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-------cchhhHHHHHHHHHHHHhhcCCC-EEE
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-------TDVTKFISGCMASLSAMVQLELP-HVN  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-------~dp~~~is~~l~sls~m~~l~lP-~In  138 (236)
                      ..+.|+|||||.++......      .+..  .. ++++++|+..-       ..+...-.     +.....+++| .|.
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~------~~~~--aD-~alLVVDa~~g~~e~gi~~~~qt~e~-----l~~~~~lgip~iIv  320 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIA------GASS--AD-FAVLVVDSSQNNFERGFLENGQTREH-----AYLLRALGISEIVV  320 (592)
T ss_dssp             ----CCEEESSSEEEEECCC----------------CCSEEEEEECCSSTTSCSCSSHHHH-----HHHHHHSSCCCEEE
T ss_pred             eEEEEEECCChHHHHHHHHH------HHhh--CC-EEEEEEECCCCccccccccchHHHHH-----HHHHHHcCCCeEEE
Confidence            46899999999886543322      2322  23 47788888631       12222211     2233457898 677


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh-hccCC----eeEEEeeccCcccHH-------
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSM----VSFMPLDLRKESSIR-------  206 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li-~d~~l----v~f~pls~~d~~~i~-------  206 (236)
                      |+||+|+.....+                      .+......+.+++ ..+++    +.|+|+|+.+++++.       
T Consensus       321 viNKiDl~~~~~~----------------------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~  378 (592)
T 3mca_A          321 SVNKLDLMSWSED----------------------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDL  378 (592)
T ss_dssp             EEECGGGGTTCHH----------------------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGG
T ss_pred             EEeccccccccHH----------------------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccccc
Confidence            8999999752100                      1122223333444 44444    589999999999998       


Q ss_pred             -------HHHHHHHHhhc
Q 026584          207 -------YVLSQIDNCIQ  217 (236)
Q Consensus       207 -------~L~~~Id~~~~  217 (236)
                             .|+..|++...
T Consensus       379 ~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          379 YKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             GGTCCSCCHHHHHHTSCC
T ss_pred             ccccchHHHHHHHHhhcc
Confidence                   79999988654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.96  E-value=3.9e-05  Score=60.25  Aligned_cols=109  Identities=12%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.++|||||-+.-.....      .+  .+.. ++++++|+..   +..+-.  .++..+.... -+.|.|.|+||+|+
T Consensus        59 ~~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl  125 (181)
T 3tw8_B           59 KLQIWDTAGQERFRTITST------YY--RGTH-GVIVVYDVTS---AESFVNVKRWLHEINQNC-DDVCRILVGNKNDD  125 (181)
T ss_dssp             EEEEEEETTGGGCSSCCGG------GG--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTC
T ss_pred             EEEEEcCCCchhhhhhHHH------Hh--ccCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCC
Confidence            4688999998664322111      12  2333 5888999764   333322  2222222211 26899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ...      ..            ...+       +...++ ..++++|+.+++++++++..|-+.+
T Consensus       126 ~~~~-~~~------~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (181)
T 3tw8_B          126 PERK-VVE------TE------------DAYK-------FAGQMG-IQLFETSAKENVNVEEMFNCITELV  169 (181)
T ss_dssp             GGGC-CSC------HH------------HHHH-------HHHHHT-CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             chhc-ccC------HH------------HHHH-------HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6533 110      00            0001       111222 4799999999999999999987754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.96  E-value=4.3e-05  Score=74.13  Aligned_cols=128  Identities=16%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||..+...+..      .+  .... ++++++|+..--.|..+-.     +....+.++|.|.|+||+|+..
T Consensus        71 ~i~liDTPGhe~F~~~~~r------~~--~~aD-~aILVvDa~~Gv~~qT~e~-----l~~l~~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKR------GG--ALAD-LAILIVDINEGFKPQTQEA-----LNILRMYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCS------SS--BSCS-EEEEEEETTTCCCHHHHHH-----HHHHHHTTCCEEEEEECGGGST
T ss_pred             CEEEEECCCcHHHHHHHHH------HH--hhCC-EEEEEEECCCCccHhHHHH-----HHHHHHcCCeEEEEeccccccc
Confidence            4799999999664322211      11  1233 5899999876444555443     2233457999999999999974


Q ss_pred             chhH--hhhhccccHHHHHHHhhhcchhHHHHHHH---HHHHHhhc-------------cC-CeeEEEeeccCcccHHHH
Q 026584          148 NKKE--IEDYLNPESQFLLSELNQHMAPQFAKLNK---SLIELVDE-------------YS-MVSFMPLDLRKESSIRYV  208 (236)
Q Consensus       148 ~~~~--l~~~l~~~~~~l~~~l~~~~~~~~~~l~~---~l~~li~d-------------~~-lv~f~pls~~d~~~i~~L  208 (236)
                      ....  -..+        .+.+..........+.+   .+.+.+.+             ++ .+.++|+|+.+++++.+|
T Consensus       137 ~~~~~~~~~~--------~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eL  208 (594)
T 1g7s_A          137 GWRVHEGRPF--------METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPEL  208 (594)
T ss_dssp             TCCCCTTCCH--------HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHH
T ss_pred             ccccccCCch--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhH
Confidence            2100  0001        11111100000111111   11111211             22 368999999999999999


Q ss_pred             HHHHHHhhc
Q 026584          209 LSQIDNCIQ  217 (236)
Q Consensus       209 ~~~Id~~~~  217 (236)
                      +..|....+
T Consensus       209 l~~I~~~~~  217 (594)
T 1g7s_A          209 LTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhcc
Confidence            999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.96  E-value=4.6e-05  Score=62.82  Aligned_cols=110  Identities=13%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.       +.+.... -.+.. ++++++|+..   +..|  +..++-.+.....-+.|.+.|.||+|+
T Consensus        76 ~l~l~Dt~G~~~~-------~~~~~~~-~~~~d-~~i~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl  143 (201)
T 2ew1_A           76 KLQIWDTAGQERF-------RSITQSY-YRSAN-ALILTYDITC---EESFRCLPEWLREIEQYASNKVITVLVGNKIDL  143 (201)
T ss_dssp             EEEEEEECCSGGG-------HHHHGGG-STTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEECCCcHHH-------HHHHHHH-HhcCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            4688999997431       1221111 12334 6888999653   3333  233333333333457999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ++.      .+            ...+    ++   ...+ ..|+++|+++++++++++..|-+.+
T Consensus       144 ~~~~-~v~------~~------------~~~~----~~---~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          144 AERR-EVS------QQ------------RAEE----FS---EAQD-MYYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             GGGC-SSC------HH------------HHHH----HH---HHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccc-ccC------HH------------HHHH----HH---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6432 110      00            0011    11   1122 5799999999999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.95  E-value=2.9e-05  Score=69.48  Aligned_cols=115  Identities=13%  Similarity=0.077  Sum_probs=61.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.|+|||||-++...   .+   ..++  +. -++++++|+.......... ..+..+ .....-+.|.|.|.||+|+.
T Consensus       210 ~l~i~Dt~G~~~~~~~---~~---~~~~--~a-d~vilV~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~  279 (329)
T 3o47_A          210 SFTVWDVGGQDKIRPL---WR---HYFQ--NT-QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLP  279 (329)
T ss_dssp             EEEEEECC-----CCS---HH---HHHT--TE-EEEEEEEETTCSSSHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             EEEEEECCCCHhHHHH---HH---HHhc--cC-CEEEEEEECCchHHHHHHH-HHHHHHHhhhccCCCeEEEEEECccCC
Confidence            5789999998664321   11   1232  23 3688899976432222211 111111 11112389999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ...        .+...+..              ... ...-..|+++|++++++|++++..|-+.+
T Consensus       280 ~~~-~~~--------~i~~~~~~--------------~~~-~~~~~~~~~vSAk~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          280 NAM-NAA--------EITDKLGL--------------HSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             TCC-CHH--------HHHHHHTC--------------TTC-CSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ccc-CHH--------HHHHHhch--------------hhh-hcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence            543 111        11111110              000 11236899999999999999999987754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.95  E-value=1.6e-05  Score=74.45  Aligned_cols=106  Identities=15%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH----HHHHHHHHHHHhhcCCC-EEEEec
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF----ISGCMASLSAMVQLELP-HVNILS  141 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~----is~~l~sls~m~~l~lP-~InVls  141 (236)
                      .++.|+|||||-      +..+.....+  .... ++++++|+..-..+..|    -+.-  .+.....+++| .|.|+|
T Consensus        85 ~~~~iiDtPGh~------~f~~~~~~~~--~~aD-~~ilVvda~~g~~~~sf~~~~qt~~--~~~~~~~~~v~~iivviN  153 (458)
T 1f60_A           85 YQVTVIDAPGHR------DFIKNMITGT--SQAD-CAILIIAGGVGEFEAGISKDGQTRE--HALLAFTLGVRQLIVAVN  153 (458)
T ss_dssp             EEEEEEECCCCT------THHHHHHHSS--SCCS-EEEEEEECSHHHHHHHTCTTSHHHH--HHHHHHHTTCCEEEEEEE
T ss_pred             ceEEEEECCCcH------HHHHHHHhhh--hhCC-EEEEEEeCCcCccccccCcchhHHH--HHHHHHHcCCCeEEEEEE
Confidence            368999999964      2333333333  2344 68999998642112111    0000  11122346888 677899


Q ss_pred             ccccccc-hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026584          142 KMDLVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR  206 (236)
Q Consensus       142 K~DLl~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~  206 (236)
                      |+|+... ...+                       ......+.+++..+++    +.|+|+|+.+++++.
T Consensus       154 K~Dl~~~~~~~~-----------------------~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~  200 (458)
T 1f60_A          154 KMDSVKWDESRF-----------------------QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  200 (458)
T ss_dssp             CGGGGTTCHHHH-----------------------HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             ccccccCCHHHH-----------------------HHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence            9999732 1111                       1111222233344443    789999999999986

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.95  E-value=3.7e-05  Score=61.70  Aligned_cols=110  Identities=14%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-..   ..   ..+  .+.. ++++++|+..   +..+  +..++-.+.....-+.|.+.|+||+|+
T Consensus        72 ~~~l~Dt~G~~~~~~~---~~---~~~--~~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  139 (189)
T 2gf9_A           72 KLQIWDTAGQERYRTI---TT---AYY--RGAM-GFLLMYDIAN---QESFAAVQDWATQIKTYSWDNAQVILVGNKCDL  139 (189)
T ss_dssp             EEEEEECCSCCSSCCS---GG---GGG--TTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEeCCCcHHHhhh---HH---Hhc--cCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            4689999998653221   11   112  2334 5788999753   3333  222322222222248999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+            ...       ++...++ +.++++|+++++++++++..|-+.+
T Consensus       140 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          140 EDER-VV----P--AE------------DGR-------RLADDLG-FEFFEASAKENINVKQVFERLVDVI  183 (189)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccc-CC----C--HH------------HHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6532 11    0  00            001       1112233 4899999999999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.95  E-value=7.1e-05  Score=60.37  Aligned_cols=110  Identities=11%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh-hcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV-QLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~-~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+...   ..   -..++..  . ++++++|+..   +..+-.  .++..+.... ..+.|.+.|+||+|
T Consensus        63 ~~~l~Dt~G~~~~~~---~~---~~~~~~~--~-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  130 (206)
T 2bov_A           63 QIDILDTAGQEDYAA---IR---DNYFRSG--E-GFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNKSD  130 (206)
T ss_dssp             EEEEEECCCTTCCHH---HH---HHHHHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred             EEEEEcCCChhhhHH---HH---HHHHhhC--C-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccC
Confidence            467999999865321   11   1223222  3 5778888653   333322  2222222222 23899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... +.      ..+.            ..       ++...++ ..++++|+.+++++++++..|-+.+
T Consensus       131 l~~~~-~~------~~~~------------~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i  175 (206)
T 2bov_A          131 LEDKR-QV------SVEE------------AK-------NRAEQWN-VNYVETSAKTRANVDKVFFDLMREI  175 (206)
T ss_dssp             CGGGC-CS------CHHH------------HH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             ccccc-cc------cHHH------------HH-------HHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            96532 11      0000            01       1122333 4799999999999999999887754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.94  E-value=4e-05  Score=61.73  Aligned_cols=109  Identities=13%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-.   ..+   ..++  +.. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        71 ~~~i~Dt~G~~~~~~---~~~---~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl  138 (191)
T 2a5j_A           71 KLQIWDTAGQESFRS---ITR---SYYR--GAA-GALLVYDITR---RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL  138 (191)
T ss_dssp             EEEEECCTTGGGTSC---CCH---HHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEECCCchhhhh---hHH---HHhc--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            468999999865322   111   2232  334 5788999754   3322  222333333222348999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.. ++    .  .+            ...       ++...++ ..|+++|+++++++++++..|-+.
T Consensus       139 ~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  181 (191)
T 2a5j_A          139 ESRR-DV----K--RE------------EGE-------AFAREHG-LIFMETSAKTACNVEEAFINTAKE  181 (191)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             CCcc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            6432 11    0  00            000       1112233 489999999999999999887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.94  E-value=2.7e-05  Score=62.59  Aligned_cols=110  Identities=10%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.   +....   ..++  +.. ++++++|+..   +..+-  ..++..+.....-+.|.+.|+||+|+
T Consensus        75 ~~~i~Dt~G~~~~---~~~~~---~~~~--~~d-~vi~v~D~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl  142 (193)
T 2oil_A           75 KAQIWDTAGLERY---RAITS---AYYR--GAV-GALLVFDLTK---HQTYAVVERWLKELYDHAEATIVVMLVGNKSDL  142 (193)
T ss_dssp             EEEEEEESCCCTT---CTTHH---HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred             EEEEEeCCCchhh---hhhhH---HHhc--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence            3568999998542   22221   2232  333 5788899754   33322  22222222222358999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  ..            ...       ++....+ +.++++|+.+++++++++..|-+.+
T Consensus       143 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          143 SQAR-EV----P--TE------------EAR-------MFAENNG-LLFLETSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6532 11    0  00            001       1112233 5899999999999999999887643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.93  E-value=8.9e-05  Score=60.52  Aligned_cols=121  Identities=15%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      ++.++|||||-+.-..   .+   ..++  +.. ++++++|+..   +..|-..  ++..+... ...+.|.+.|.||+|
T Consensus        70 ~l~i~Dt~G~~~~~~~---~~---~~~~--~~d-~~i~v~D~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  137 (198)
T 1f6b_A           70 TFTTFDLGGHIQARRV---WK---NYLP--AIN-GIVFLVDCAD---HERLLESKEELDSLMTDETIANVPILILGNKID  137 (198)
T ss_dssp             EEEEEEECC----CCG---GG---GGGG--GCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTT
T ss_pred             EEEEEECCCcHhhHHH---HH---HHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHhCcccCCCcEEEEEECCC
Confidence            5789999998763321   11   1122  233 5889999753   4433322  22211111 124899999999999


Q ss_pred             cccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+..  .++.+++...        ..... +      .. ..+.+  ..-..++++|+++++++++++..+-+.+
T Consensus       138 l~~~~~~~~~~~~~~~~--------~~~~~-~------~~-~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          138 RPEAISEERLREMFGLY--------GQTTG-K------GS-VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             STTCCCHHHHHHHHTCT--------TTCCC-S------SC-CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCCHHHHHHHhCcc--------ccccc-c------cc-cccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            96421  1111111100        00000 0      00 00111  1237899999999999999999886643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.93  E-value=2.6e-05  Score=73.66  Aligned_cols=143  Identities=12%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHH-HHH-Hhh-CCCceEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNF-VDH-LKS-RNFNVCAV  104 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~i-v~~-L~~-~~~~~~~V  104 (236)
                      ||.|.-.-++.|..+-..........          .....+.|+|||||-+ +.  +....+ +++ +.. .+.. +++
T Consensus       242 ~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~--~~ve~~gi~~~~~~~~~aD-~vl  317 (476)
T 3gee_A          242 PNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AG--EEIEHEGIRRSRMKMAEAD-LIL  317 (476)
T ss_dssp             TTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------CCCSSCS-EEE
T ss_pred             CCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-ch--hHHHHHHHHHHHhhcccCC-EEE
Confidence            78888888888875410222221111          1123579999999866 22  222111 111 211 2344 689


Q ss_pred             EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      +++|+..-..... +... ..+.-.++ +.|.|.|+||+|+.+.. ....                     ..    +.+
T Consensus       318 ~VvD~s~~~s~~~-~~~~-~~~l~~l~-~~piIvV~NK~Dl~~~~-~~~~---------------------~~----l~~  368 (476)
T 3gee_A          318 YLLDLGTERLDDE-LTEI-RELKAAHP-AAKFLTVANKLDRAANA-DALI---------------------RA----IAD  368 (476)
T ss_dssp             EEEETTTCSSGGG-HHHH-HHHHHHCT-TSEEEEEEECTTSCTTT-HHHH---------------------HH----HHH
T ss_pred             EEEECCCCcchhh-hHHH-HHHHHhcC-CCCEEEEEECcCCCCcc-chhH---------------------HH----HHh
Confidence            9999876544422 1111 11122233 89999999999997544 1100                     00    111


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .    +...++++|+++++++++|+..|-+.++
T Consensus       369 ~----~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          369 G----TGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             H----HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             c----CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            1    2257899999999999999999999886

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.93  E-value=5.8e-05  Score=59.05  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=58.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-.. .+ .   .+.... -.+.. ++++++|+.   ++..|-..  ++..+... ..-+.|.+.|.||+|
T Consensus        53 ~~~~~D~~g~~~~-~~-~---~~~~~~-~~~~~-~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D  122 (175)
T 2nzj_A           53 TLVVVDTWEAEKL-DK-S---WSQESC-LQGGS-AYVIVYSIA---DRGSFESASELRIQLRRTHQADHVPIILVGNKAD  122 (175)
T ss_dssp             EEEEECCC---------C---HHHHHT-TTSCS-EEEEEEETT---CHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred             EEEEEecCCCCcc-ch-h---hhHHhh-cccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence            3579999998653 11 1   111111 12333 577788865   44443322  22111111 113899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... ++.      .+.            ...+       ...++ ..|+++|+++++++++++..|-+.+
T Consensus       123 l~~~~-~v~------~~~------------~~~~-------~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          123 LARCR-EVS------VEE------------GRAC-------AVVFD-CKFIETSATLQHNVAELFEGVVRQL  167 (175)
T ss_dssp             CTTTC-CSC------HHH------------HHHH-------HHHHT-SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcccc-ccC------HHH------------HHHH-------HHHcC-CeEEEEecCCCCCHHHHHHHHHHHH
Confidence            97543 110      000            0011       11223 5899999999999999999987755

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.92  E-value=2e-05  Score=64.16  Aligned_cols=110  Identities=13%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+......      ..+  .+.. ++++++|+..   +..+-  ..++-.+.....-+.|.+.|+||+|+
T Consensus        58 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  125 (206)
T 2bcg_Y           58 KLQIWDTAGQERFRTITS------SYY--RGSH-GIIIVYDVTD---QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL  125 (206)
T ss_dssp             EEEEECCTTTTTTTCCCG------GGG--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEeCCChHHHHHHHH------Hhc--cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            478999999865322111      112  2333 5888999754   33322  22333333333347999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+            ...       ++...++ +.++++|+.+++++++++..|-+.+
T Consensus       126 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i  169 (206)
T 2bcg_Y          126 KDKR-VV----E--YD------------VAK-------EFADANK-MPFLETSALDSTNVEDAFLTMARQI  169 (206)
T ss_dssp             TTTC-CS----C--HH------------HHH-------HHHHHTT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7532 11    0  00            001       1112233 5899999999999999999887754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.92  E-value=1.6e-05  Score=68.79  Aligned_cols=122  Identities=8%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             CCEEEEeCCCceeeee---ccc---hHHH-HHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE
Q 026584           67 DDYLVFDCPGQIELFT---HVP---VLRN-FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI  139 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~---~~~---~~~~-iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV  139 (236)
                      .++.|+||||+.+...   ...   ..+. ...++ + +...++++++|+..-....... .+   +...-..+.|.+.|
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~il~v~d~~~~~~~~~~~-~~---~~~~~~~~~~~i~V  198 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-T-KENCLILAVSPANSDLANSDAL-KI---AKEVDPQGQRTIGV  198 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH-T-STTEEEEEEEESSSCGGGCHHH-HH---HHHHCTTCSSEEEE
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH-c-CCCeEEEEEecCCcchhhhHHH-HH---HHHhCCCCCeEEEE
Confidence            4799999999765332   111   2222 22333 2 3445566889986532222211 01   12223468999999


Q ss_pred             ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +||+|+..........+.           ....             -...+...++++|+.++++++.++..|.+-..+
T Consensus       199 ~NK~Dl~~~~~~~~~~~~-----------~~~~-------------~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~  253 (299)
T 2aka_B          199 ITKLDLMDEGTDARDVLE-----------NKLL-------------PLRRGYIGVVNRSQKDIDGKKDITAALAAERKF  253 (299)
T ss_dssp             EECGGGSCTTCCCHHHHT-----------TCSS-------------CCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             EEccccCCCCchHHHHHh-----------CCcC-------------cCCCCcEEEECCChhhccccccHHHHHHHHHHH
Confidence            999999864311111111           0000             001134678899999999999999988774433

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.92  E-value=4.8e-05  Score=61.63  Aligned_cols=110  Identities=11%  Similarity=0.182  Sum_probs=64.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.       +.+....-+ +.. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        58 ~~~l~Dt~G~~~~-------~~~~~~~~~-~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  125 (203)
T 1zbd_A           58 KLQIWDTAGLERY-------RTITTAYYR-GAM-GFILMYDITN---EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM  125 (203)
T ss_dssp             EEEEEEECCSGGG-------HHHHHTTGG-GCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTC
T ss_pred             EEEEEECCCchhh-------cchHHHhhc-CCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            4689999998431       122111111 233 5888999653   4333  223333333222248999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+            ...+       +...++ +.++++|+.+++++++++..|-+.+
T Consensus       126 ~~~~-~~----~--~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  169 (203)
T 1zbd_A          126 EDER-VV----S--SE------------RGRQ-------LADHLG-FEFFEASAKDNINVKQTFERLVDVI  169 (203)
T ss_dssp             TTSC-CS----C--HH------------HHHH-------HHHHHT-CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             Cccc-cc----C--HH------------HHHH-------HHHHCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6532 11    0  00            0011       112223 4899999999999999988877643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.91  E-value=3.2e-05  Score=62.94  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      +.|+|||||-+.-.....      .+  .+.. ++++++|+..   +..+-.  .++..+... ..-+.|.+.|+||+|+
T Consensus        74 ~~l~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  141 (201)
T 3oes_A           74 LHLVDTAGQDEYSILPYS------FI--IGVH-GYVLVYSVTS---LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL  141 (201)
T ss_dssp             EEEEEECCCCTTCCCCGG------GT--TTCC-EEEEEEETTC---HHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred             EEEEECCCccchHHHHHH------HH--hcCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence            579999998764322111      12  2333 5788888763   333322  222221111 1237899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .+.. .+..      .            ...       ++...++ ..|+++|+++++++++++..|-+.+.-
T Consensus       142 ~~~~-~v~~------~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          142 SPER-EVQA------V------------EGK-------KLAESWG-ATFMESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             GGGC-CSCH------H------------HHH-------HHHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccc-ccCH------H------------HHH-------HHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            7533 1100      0            000       1112223 489999999999999999998776543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.90  E-value=6.3e-05  Score=59.40  Aligned_cols=106  Identities=9%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHH--HHHHHhh---cCCCEEEEeccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA--SLSAMVQ---LELPHVNILSKM  143 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~--sls~m~~---l~lP~InVlsK~  143 (236)
                      ..++|||||.+        .   ..++.  .. ++++++|+.   ++..|-...-+  -+....+   -+.|.+.|.||+
T Consensus        56 l~i~Dt~G~~~--------~---~~~~~--~d-~~ilv~D~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~  118 (178)
T 2iwr_A           56 VLIREEAGAPD--------A---KFSGW--AD-AVIFVFSLE---DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD  118 (178)
T ss_dssp             EEEEECSSSCC--------H---HHHHH--CS-EEEEEEETT---CHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECT
T ss_pred             EEEEECCCCch--------h---HHHHh--CC-EEEEEEECc---CHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            57799999976        1   23333  23 578889964   45554433211  1221211   378999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      |+.... .  +-..  .+            ...       ++...++-..|+++|+++++++++++..+-+.
T Consensus       119 Dl~~~~-~--~~v~--~~------------~~~-------~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  166 (178)
T 2iwr_A          119 RISASS-P--RVVG--DA------------RAR-------ALXADMKRCSYYETXATYGLNVDRVFQEVAQK  166 (178)
T ss_dssp             TCBTTB-C--CCSC--HH------------HHH-------HHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             cccccc-c--CcCC--HH------------HHH-------HHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence            995311 0  0000  00            001       12223344789999999999999999988664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.90  E-value=0.00019  Score=58.08  Aligned_cols=123  Identities=17%  Similarity=0.243  Sum_probs=65.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+-|+|||||-.+....-.   .-..++.  .. ++++++|+..- .+.-..+..++..+. ...-+.|.+.|.||+||.
T Consensus        70 ~l~i~Dt~G~~~~~~~~~~---~~~~~~~--~~-~~i~v~d~~~~~~~~~~~~~~~l~~~~-~~~~~~piilv~nK~Dl~  142 (196)
T 3llu_A           70 NFQIWDFPGQMDFFDPTFD---YEMIFRG--TG-ALIYVIDAQDDYMEALTRLHITVSKAY-KVNPDMNFEVFIHKVDGL  142 (196)
T ss_dssp             CEEEEECCSSCCTTCTTCC---HHHHHHT--CS-EEEEEEETTSCCHHHHHHHHHHHHHHH-HHCTTCEEEEEEECGGGS
T ss_pred             EEEEEECCCCHHHHhhhhh---ccccccc--CC-EEEEEEECCCchHHHHHHHHHHHHHHH-hcCCCCcEEEEEeccccC
Confidence            5789999998663222100   0122322  33 57899997652 111122222222211 123489999999999998


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +....+...         .       .......+.+++....-.-+.|+++|+++ +++++++..+=+
T Consensus       143 ~~~~~~~~~---------~-------~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~  193 (196)
T 3llu_A          143 SDDHKIETQ---------R-------DIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ  193 (196)
T ss_dssp             CHHHHHHHH---------H-------HHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred             chhhhhHHH---------h-------HHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence            654111100         0       00111112222211111227899999999 999999988754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.90  E-value=2.3e-05  Score=66.77  Aligned_cols=129  Identities=12%  Similarity=0.160  Sum_probs=70.5

Q ss_pred             CEEEEeCCCceeeeeccc-hHHHHHHHHh-h-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec-cc
Q 026584           68 DYLVFDCPGQIELFTHVP-VLRNFVDHLK-S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS-KM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~-~~~~iv~~L~-~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls-K~  143 (236)
                      ++.|+||||+........ ..+.+.+.+. . .+.. ++++++|+..+......+...+.... -.+...|.|.|+| |+
T Consensus        72 ~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d-~il~V~d~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~vv~nK~  149 (260)
T 2xtp_A           72 EIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH-VLLLVTQLGRYTSQDQQAAQRVKEIF-GEDAMGHTIVLFTHKE  149 (260)
T ss_dssp             EEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCS-EEEEEEETTCCCHHHHHHHHHHHHHH-CGGGGGGEEEEEECGG
T ss_pred             EEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCc-EEEEEEeCCCCCHHHHHHHHHHHHHh-CchhhccEEEEEEccc
Confidence            589999999876432222 1223333332 1 2344 68999998754333332222211110 0112679999998 99


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-e-eE--EEeeccCcccHHHHHHHHHHhhcc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-V-SF--MPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v-~f--~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |+...  .+..++...           ..       ..+.+++...+. . .|  +|+|++++.+++.++..|.+.+..
T Consensus       150 Dl~~~--~~~~~i~~~-----------~~-------~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          150 DLNGG--SLMDYMHDS-----------DN-------KALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GGTTC--CHHHHHHHC-----------CC-------HHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCc--cHHHHHHhc-----------ch-------HHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            99743  233322210           00       011122233332 1 13  889999999999999999887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.89  E-value=0.0001  Score=59.04  Aligned_cols=111  Identities=7%  Similarity=0.117  Sum_probs=63.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh--hcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV--QLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~--~l~lP~InVlsK~  143 (236)
                      .+.++|||||-+..   ...   -..+...  . ++++++|+..   +..+-.  .++..+....  .-+.|.+.|+||+
T Consensus        57 ~~~l~Dt~G~~~~~---~~~---~~~~~~~--d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~  124 (199)
T 2gf0_A           57 TLQITDTTGSHQFP---AMQ---RLSISKG--H-AFILVFSVTS---KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC  124 (199)
T ss_dssp             EEEEEECCGGGSCH---HHH---HHHHHHC--S-EEEEEEETTC---HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECT
T ss_pred             EEEEEeCCChHHhH---HHH---HHhhccC--C-EEEEEEECcC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            46799999986532   111   1223222  3 5788888753   332211  1111122111  1378999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      |+....  .    .  ...            ...       +...++ ..|+++|+.+++++++++..|-+.+..
T Consensus       125 Dl~~~~--~----~--~~~------------~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          125 DETQRE--V----D--TRE------------AQA-------VAQEWK-CAFMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             TCSSCS--S----C--HHH------------HHH-------HHHHHT-CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             cCCccc--c----C--HHH------------HHH-------HHHHhC-CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            997532  1    0  000            001       111223 589999999999999999999886543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.89  E-value=6.6e-05  Score=60.06  Aligned_cols=121  Identities=11%  Similarity=0.087  Sum_probs=66.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.++|||||-+.-.   ..+.   .+  .+.. ++++++|+..   +..|-..   ++-.+. ...-+.|.+.|.||+|
T Consensus        56 ~~~i~Dt~G~~~~~~---~~~~---~~--~~~~-~~i~v~d~~~---~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~D  122 (184)
T 1m7b_A           56 ELSLWDTSGSPYYDN---VRPL---SY--PDSD-AVLICFDISR---PETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD  122 (184)
T ss_dssp             EEEEEEECCSGGGTT---TGGG---GC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHH-HHCTTCEEEEEEECGG
T ss_pred             EEEEEECCCChhhhh---hHHh---hc--CCCc-EEEEEEECCC---HHHHHHHHHHHHHHHH-HHCCCCCEEEEEEcch
Confidence            468999999855211   1100   11  2333 5788999753   4444332   221221 1223899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc-CcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~-d~~~i~~L~~~Id~~  215 (236)
                      +......+.++...        ......  .    ....++...++...|+++|++ +++++++++..|-+.
T Consensus       123 l~~~~~~~~~~~~~--------~~~~v~--~----~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~  180 (184)
T 1m7b_A          123 LRTDVSTLVELSNH--------RQTPVS--Y----DQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  180 (184)
T ss_dssp             GGGCHHHHHHHHTT--------TCCCCC--H----HHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             hhcchhhHhhhhhc--------ccCCCC--H----HHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence            97543222211110        000000  0    011233344566789999998 689999999888664

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.89  E-value=5.4e-05  Score=60.70  Aligned_cols=112  Identities=12%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-++-   .   .+.. .++  +.. ++++++|+..-..... +..++..+.... .-+.|.+.|+||+|+
T Consensus        70 ~~~l~Dt~G~~~~~---~---~~~~~~~~--~~d-~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl  139 (189)
T 1z06_A           70 KIQLWDTAGQERFR---K---SMVQHYYR--NVH-AVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILVGNKCDL  139 (189)
T ss_dssp             EEEEEECCCSHHHH---T---TTHHHHHT--TCC-EEEEEEETTCHHHHHT-HHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred             EEEEEECCCchhhh---h---hhhHHHhc--CCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            46899999975421   0   1112 232  333 6889999764222111 222333332222 458999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCc---ccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE---SSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~---~~i~~L~~~Id~~~  216 (236)
                      .... ++.      .+            ...       ++...++ +.|+++|++++   +++++++..|-+.+
T Consensus       140 ~~~~-~v~------~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          140 RSAI-QVP------TD------------LAQ-------KFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             GGGC-CSC------HH------------HHH-------HHHHHTT-CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             cccc-eeC------HH------------HHH-------HHHHHcC-CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            6432 110      00            001       1112233 48999999999   99999998876543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.89  E-value=3.6e-05  Score=61.47  Aligned_cols=112  Identities=10%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.-   ...+   ..++  +.. ++++++|+..   +..+-  ..++-.+.... .-+.|.+.|+||+|
T Consensus        65 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D  132 (195)
T 1x3s_A           65 KLAIWDTAGQERFR---TLTP---SYYR--GAQ-GVILVYDVTR---RDTFVKLDNWLNELETYCTRNDIVNMLVGNKID  132 (195)
T ss_dssp             EEEEEEECSSGGGC---CSHH---HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred             EEEEEeCCCchhhh---hhhH---HHhc--cCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence            36889999986532   2221   2232  233 5888999753   33332  22222221111 13789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      +....  .    .  ...            ..       ++...++ ..|+++|+++++++++++..|-+.+.-.
T Consensus       133 l~~~~--~----~--~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          133 KENRE--V----D--RNE------------GL-------KFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             SSSCC--S----C--HHH------------HH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             Ccccc--c----C--HHH------------HH-------HHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            94322  1    0  000            00       1112233 5799999999999999999988765433

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.88  E-value=0.00012  Score=59.37  Aligned_cols=118  Identities=13%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||-+.-   .   .....++..  . ++++++|+..-..... +..++-.+.....-+.|.+.|+||+|+..
T Consensus        78 ~l~i~Dt~G~~~~~---~---~~~~~~~~~--d-~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~NK~Dl~~  147 (199)
T 2p5s_A           78 VLQLWDTAGQERFR---S---IAKSYFRKA--D-GVLLLYDVTCEKSFLN-IREWVDMIEDAAHETVPIMLVGNKADIRD  147 (199)
T ss_dssp             EEEEEECTTCTTCH---H---HHHHHHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred             EEEEEECCCCcchh---h---hHHHHHhhC--C-EEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence            36799999975521   1   122233333  3 5888999753222111 22233223322334899999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. ..+..-.             .   ..+....+   ...++ ..|+++|+++++++++++..|-+.+
T Consensus       148 ~~-~~~~~~~-------------v---~~~~~~~~---~~~~~-~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          148 TA-ATEGQKC-------------V---PGHFGEKL---AMTYG-ALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             HH-HHTTCCC-------------C---CHHHHHHH---HHHHT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cc-ccccccc-------------c---CHHHHHHH---HHHcC-CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            32 1100000             0   00011111   12233 4899999999999999999887654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.88  E-value=5.9e-05  Score=78.33  Aligned_cols=114  Identities=18%  Similarity=0.301  Sum_probs=69.5

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL  145 (236)
                      ..+.|+|||||..+      .+.....+  .... ++++++|+..-..+...-.     +.....+++|+ |.|+||+|+
T Consensus       359 ~kI~IIDTPGHedF------~~~mi~ga--s~AD-~aILVVDAtdGv~~QTrEh-----L~ll~~lgIP~IIVVINKiDL  424 (1289)
T 3avx_A          359 RHYAHVDCPGHADY------VKNMITGA--AQMD-GAILVVAATDGPMPQTREH-----ILLGRQVGVPYIIVFLNKCDM  424 (1289)
T ss_dssp             CEEEEEECCCHHHH------HHHHHHTS--CCCS-EEEEEEETTTCSCTTHHHH-----HHHHHHHTCSCEEEEEECCTT
T ss_pred             EEEEEEECCChHHH------HHHHHHHH--hhCC-EEEEEEcCCccCcHHHHHH-----HHHHHHcCCCeEEEEEeeccc
Confidence            46899999998752      22333333  2344 5899999865333332111     11222469995 788999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCc--------ccHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE--------SSIRYVLSQID  213 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~--------~~i~~L~~~Id  213 (236)
                      ..+...++                       .....+.+++..+++    +.++|+|+.++        +++..|+..|+
T Consensus       425 v~d~e~le-----------------------~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~  481 (1289)
T 3avx_A          425 VDDEELLE-----------------------LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD  481 (1289)
T ss_dssp             CCCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred             ccchhhHH-----------------------HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence            75331111                       111122233444443    78999999998        57999999998


Q ss_pred             Hhhc
Q 026584          214 NCIQ  217 (236)
Q Consensus       214 ~~~~  217 (236)
                      +.+.
T Consensus       482 ~~Ip  485 (1289)
T 3avx_A          482 SYIP  485 (1289)
T ss_dssp             HTSC
T ss_pred             hhcC
Confidence            8664

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.10  E-value=1.8e-06  Score=70.55  Aligned_cols=123  Identities=11%  Similarity=0.120  Sum_probs=64.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      ..++|||||-+.-.   ..+   ..++  +.. ++++++|+..-.........++..+.... -+.|.+.|.||+|+...
T Consensus        80 l~i~Dt~G~~~~~~---~~~---~~~~--~~d-~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           80 LGLWDTAGQEDYDR---LRP---LSYP--QTD-VFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  149 (204)
Confidence            34899999865321   111   1122  223 57788886432222221111221122111 18999999999999764


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ......+.....    ..+.          .....++...++...|+++|+++++++++++..|-+.
T Consensus       150 ~~~~~~~~~~~~----~~v~----------~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          150 KDTIEKLKEKKL----TPIT----------YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            311111111000    0000          0111233344455689999999999999999887653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.87  E-value=2.5e-05  Score=72.75  Aligned_cols=113  Identities=14%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             CEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.++|||||.+.-.. .....+....+.  +.. ++++++|+. ..   .....+   +......++|.|.|+||+|+.
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~--~aD-~vllVvD~~-~~---~~~~~~---l~~l~~~~~piIvV~NK~Dl~  153 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFY--RAD-CGILVTDSA-PT---PYEDDV---VNLFKEMEIPFVVVVNKIDVL  153 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHT--SCS-EEEEECSSS-CC---HHHHHH---HHHHHHTTCCEEEECCCCTTT
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHh--cCC-EEEEEEeCC-Ch---HHHHHH---HHHHHhcCCCEEEEEeCcCCC
Confidence            6789999999873322 122444444553  334 588999982 22   222222   233344599999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      +... .         ....                  ++.+.++ +.++++|+++++++++++..|-+.++-.
T Consensus       154 ~~~~-~---------~~~~------------------~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          154 GEKA-E---------ELKG------------------LYESRYE-AKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             TCCC-T---------HHHH------------------HSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             CccH-H---------HHHH------------------HHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            6541 1         0001                  1122333 5899999999999999999999988544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.86  E-value=7.5e-05  Score=60.28  Aligned_cols=107  Identities=13%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~DL  145 (236)
                      +-|+|||||-+. .          .++..  . ++++++|+.   ++..|-.  .++-.+....+ -+.|.+.|.||+|+
T Consensus        69 l~i~Dt~G~~~~-~----------~~~~~--~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (184)
T 3ihw_A           69 LLIRDEGGPPEL-Q----------FAAWV--D-AVVFVFSLE---DEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI  131 (184)
T ss_dssp             EEEEECSSSCCH-H----------HHHHC--S-EEEEEEETT---CHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred             EEEEECCCChhh-h----------eecCC--C-EEEEEEECc---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            456999998542 2          34332  3 578888965   4444433  22222222111 47899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ......   -..  .                   ....++...++...|+++|+++++++++++..+-+.+
T Consensus       132 ~~~~~~---~v~--~-------------------~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i  178 (184)
T 3ihw_A          132 SAANPR---VID--D-------------------SRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV  178 (184)
T ss_dssp             BTTBCC---CSC--H-------------------HHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             cccccc---ccC--H-------------------HHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            632100   000  0                   0111233456667899999999999999999887643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.85  E-value=3e-05  Score=62.55  Aligned_cols=110  Identities=12%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh---cCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ---LELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~---l~lP~InVlsK  142 (236)
                      .+.|+|||||-+.       +.+.... -.+.. ++++++|+.   ++..+-  ..++..+.....   .+.|.+.|+||
T Consensus        74 ~~~l~Dt~G~~~~-------~~~~~~~-~~~~d-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  141 (208)
T 2yc2_C           74 ELFLLDTAGSDLY-------KEQISQY-WNGVY-YAILVFDVS---SMESFESCKAWFELLKSARPDRERPLRAVLVANK  141 (208)
T ss_dssp             EEEEEETTTTHHH-------HHHHSTT-CCCCC-EEEEEEETT---CHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred             EEEEEECCCcHHH-------HHHHHHH-HhhCc-EEEEEEECC---CHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence            4789999998431       1111111 12333 688999965   343332  223322322222   58999999999


Q ss_pred             ccccc-chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC-cccHHHHHHHHHHhh
Q 026584          143 MDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-ESSIRYVLSQIDNCI  216 (236)
Q Consensus       143 ~DLl~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d-~~~i~~L~~~Id~~~  216 (236)
                      +|+.. .. .+    .  .+            ...       ++...++ ..++++|+++ ++++.+++..|-+.+
T Consensus       142 ~Dl~~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          142 TDLPPQRH-QV----R--LD------------MAQ-------DWATTNT-LDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             C--------CC----C--HH------------HHH-------HHHHHTT-CEEEECCC-------CHHHHHHHHHH
T ss_pred             cccchhhc-cC----C--HH------------HHH-------HHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence            99975 22 11    0  00            001       1222334 6899999999 999999999887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.83  E-value=6.6e-05  Score=61.21  Aligned_cols=110  Identities=13%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-.   ..+   ..++  +.. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        75 ~l~l~Dt~G~~~~~~---~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  142 (200)
T 2o52_A           75 KLQIWDTAGQERFRS---VTR---SYYR--GAA-GALLVYDITS---RETYNSLAAWLTDARTLASPNIVVILCGNKKDL  142 (200)
T ss_dssp             EEEEECCTTHHHHSC---CCH---HHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGG
T ss_pred             EEEEEcCCCcHhHHH---HHH---HHhc--cCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc
Confidence            578999999865221   111   2232  333 5788999754   3332  223333333333358999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  ..            ...       ++...++ +.|+++|+++++++++++..|-+.+
T Consensus       143 ~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          143 DPER-EV----T--FL------------EAS-------RFAQENE-LMFLETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6432 11    0  00            000       1112223 5899999999999999999887754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.83  E-value=4.5e-05  Score=62.54  Aligned_cols=110  Identities=21%  Similarity=0.292  Sum_probs=63.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.       +.+....- .+.. ++++++|+..   +..+-..  ++..+..... -+.|.+.|+||+|
T Consensus        85 ~l~l~Dt~G~~~~-------~~~~~~~~-~~~d-~iilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D  152 (217)
T 2f7s_A           85 HLQLWDTAGQERF-------RSLTTAFF-RDAM-GFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD  152 (217)
T ss_dssp             EEEEEEEESHHHH-------HHHHHHHH-TTCC-EEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred             EEEEEECCCcHhH-------HhHHHHHh-cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence            4789999997541       22222221 2344 5889999753   4443221  1111111111 4789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.... ..    .  ..            ...       ++...++ +.++++|+++++++++++..|-+.+
T Consensus       153 l~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i  197 (217)
T 2f7s_A          153 LPDQR-EV----N--ER------------QAR-------ELADKYG-IPYFETSAATGQNVEKAVETLLDLI  197 (217)
T ss_dssp             CGGGC-CS----C--HH------------HHH-------HHHHHTT-CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             ccccc-cc----C--HH------------HHH-------HHHHHCC-CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            96432 11    0  00            001       1112223 5799999999999999999987754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.81  E-value=1.1e-05  Score=65.68  Aligned_cols=110  Identities=15%  Similarity=0.252  Sum_probs=58.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.......      .+  .+.. ++++++|+..   +..|  +..++..+.....-+.|.+.|+||+|+
T Consensus        83 ~~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl  150 (199)
T 3l0i_B           83 KLQIWDTAGQERFRTITSS------YY--RGAH-GIIVVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  150 (199)
T ss_dssp             EEEEECCTTCTTCCCCSCC----------CCCS-EEEECC-CCC---SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred             EEEEEECCCcHhHHHHHHH------Hh--hcCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence            4789999998764432211      12  2333 5788999764   3332  223333333222338999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ...   .....                      ++...++ +.++++|+++++++++++..|-+.+
T Consensus       151 ~~~~-~v~---~~~~~----------------------~~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l  194 (199)
T 3l0i_B          151 TTKK-VVD---YTTAK----------------------EFADSLG-IPFLETSAKNATNVEQSFMTMAAEI  194 (199)
T ss_dssp             C--C-CCC---SCC-C----------------------HHHHTTT-CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred             Cccc-cCC---HHHHH----------------------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7543 110   00000                      1111222 5789999999999999999987654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.81  E-value=2.5e-05  Score=64.47  Aligned_cols=121  Identities=11%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.-.   ..+.   .+  .+.. ++++++|+..   +..|-..   ++-.+.. ..-+.|.+.|.||+|
T Consensus        77 ~l~i~Dt~G~~~~~~---~~~~---~~--~~~d-~~ilv~D~~~---~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~D  143 (205)
T 1gwn_A           77 ELSLWDTSGSPYYDN---VRPL---SY--PDSD-AVLICFDISR---PETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSD  143 (205)
T ss_dssp             EEEEEEECCSGGGTT---TGGG---GC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGG
T ss_pred             EEEEEeCCCcHhhhH---HHHh---hc--cCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHH-HCCCCCEEEEEechh
Confidence            468999999865211   1100   11  2333 5888999754   4444332   2222221 123899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc-CcccHHHHHHHHHHh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNC  215 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~-d~~~i~~L~~~Id~~  215 (236)
                      +........++....        ....  ..    ....++...++...|+++|++ +++++++++..|-+.
T Consensus       144 l~~~~~~~~~~~~~~--------~~~v--~~----~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~  201 (205)
T 1gwn_A          144 LRTDVSTLVELSNHR--------QTPV--SY----DQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  201 (205)
T ss_dssp             GGGCHHHHHHHHTTT--------CCCC--CH----HHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             hccchhhhhhhcccc--------cCCC--CH----HHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence            976432222111100        0000  00    011123334556789999998 789999999888664

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.81  E-value=3e-05  Score=72.73  Aligned_cols=107  Identities=13%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCCC-EEE
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELP-HVN  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~lP-~In  138 (236)
                      ..|.|+|||||..+ .     +.....++  ... ++++++|+..-.       .+... ..    +.....+++| .|.
T Consensus       121 ~~~~iiDtPGh~~f-~-----~~~~~~~~--~aD-~~ilVvDa~~g~~e~sf~~~~qt~-e~----l~~~~~~~vp~iiv  186 (467)
T 1r5b_A          121 RRFSLLDAPGHKGY-V-----TNMINGAS--QAD-IGVLVISARRGEFEAGFERGGQTR-EH----AVLARTQGINHLVV  186 (467)
T ss_dssp             EEEEECCCCC-----------------TT--SCS-EEEEEEECSTTHHHHTTSTTCCHH-HH----HHHHHHTTCSSEEE
T ss_pred             eEEEEEECCCcHHH-H-----HHHHhhcc--cCC-EEEEEEeCCcCccccccCCCCcHH-HH----HHHHHHcCCCEEEE
Confidence            35889999998652 2     22333332  344 689999986421       11211 11    1122347899 788


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc---cC---CeeEEEeeccCcccHHH
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE---YS---MVSFMPLDLRKESSIRY  207 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d---~~---lv~f~pls~~d~~~i~~  207 (236)
                      |+||+|+....  .      +.+            ++......+.+++..   |.   -+.|+|+|+.+++++.+
T Consensus       187 viNK~Dl~~~~--~------~~~------------~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~  241 (467)
T 1r5b_A          187 VINKMDEPSVQ--W------SEE------------RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  241 (467)
T ss_dssp             EEECTTSTTCS--S------CHH------------HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             EEECccCCCcc--c------cHH------------HHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence            89999996421  0      000            011111112222222   22   37899999999999875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.80  E-value=0.00013  Score=57.30  Aligned_cols=110  Identities=14%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhh--cCCC-EEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ--LELP-HVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~--l~lP-~InVlsK  142 (236)
                      .+.++|||||-+.   +...+   ..++  +.. ++++++|+..   +..+  +..++-.+.....  -+.| .+.|.||
T Consensus        57 ~~~~~Dt~G~~~~---~~~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK  124 (178)
T 2hxs_A           57 TLQIWDIGGQTIG---GKMLD---KYIY--GAQ-GVLLVYDITN---YQSFENLEDWYTVVKKVSEESETQPLVALVGNK  124 (178)
T ss_dssp             EEEEEECTTCCTT---CTTHH---HHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred             EEEEEECCCCccc---cchhh---HHHh--hCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence            5789999998652   22222   2232  334 5888999753   3332  2222222222211  2677 6889999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +|+.... ..    .  .+            ...       ++...++ +.++++|+++++++++++..|-+.+
T Consensus       125 ~Dl~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (178)
T 2hxs_A          125 IDLEHMR-TI----K--PE------------KHL-------RFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEI  171 (178)
T ss_dssp             GGGGGGC-SS----C--HH------------HHH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccc-cc----C--HH------------HHH-------HHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9996432 11    0  00            001       1112223 5899999999999999999987754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.80  E-value=0.00012  Score=65.99  Aligned_cols=116  Identities=17%  Similarity=0.284  Sum_probs=67.9

Q ss_pred             EEEEeCCCceeeeeccc-hH-HHHHHHHhhCCCceEEEEeecCCCcc--chhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           69 YLVFDCPGQIELFTHVP-VL-RNFVDHLKSRNFNVCAVYLLDSQFIT--DVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~-~~-~~iv~~L~~~~~~~~~V~LiD~~~~~--dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..++||||+.+...+.. .+ +..+..+. .... ++++++|+....  +.... ..++..+..... +.|.|.|+||+|
T Consensus       216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~-~~ad-~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~-~~piilV~NK~D  291 (357)
T 2e87_A          216 YQIIDTPGLLDRPISERNEIEKQAILALR-YLGN-LIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFK-DLPFLVVINKID  291 (357)
T ss_dssp             EEEEECTTTSSSCSTTSCHHHHHHHHGGG-GTCS-EEEEEECTTCTTSSCHHHH-HHHHHHHHHHTT-TSCEEEEECCTT
T ss_pred             EEEEeCCCccccchhhhhHHHHHHHHHHH-hcCC-EEEEEEeCCccccCCHHHH-HHHHHHHHHhcC-CCCEEEEEECcc
Confidence            68999999987433322 22 12222222 2233 588999965432  33222 122222222222 899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.... ++..            .               .+.+... ...++++|+.+++++++|+..|-+.+.
T Consensus       292 l~~~~-~~~~------------~---------------~~~~~~~-~~~~~~iSA~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          292 VADEE-NIKR------------L---------------EKFVKEK-GLNPIKISALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             TCCHH-HHHH------------H---------------HHHHHHT-TCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             cCChH-HHHH------------H---------------HHHHHhc-CCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence            97543 2210            0               0111122 257899999999999999999987654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.79  E-value=2.5e-05  Score=68.01  Aligned_cols=120  Identities=12%  Similarity=0.138  Sum_probs=67.3

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++|||||-+.-.   ...   ..+  .+.. ++++++|+..   +..+-..   ++-.+.... -+.|.+.|.||+|+.
T Consensus       206 ~l~Dt~G~~~~~~---~~~---~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~  272 (332)
T 2wkq_A          206 GLWDTAGLEDYDR---LRP---LSY--PQTD-VFLICFSLVS---PASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR  272 (332)
T ss_dssp             EEEEECCCGGGTT---TGG---GGC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHH
T ss_pred             EEEeCCCchhhhH---HHH---Hhc--cCCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcc
Confidence            3999999854211   110   112  2344 5888999753   4443332   222222222 289999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ........+....       .. ..  .    .....++...++...|+++|+++++++++++..|-+.+
T Consensus       273 ~~~~~~~~~~~~~-------~~-~v--~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          273 DDKDTIEKLKEKK-------LT-PI--T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             TCHHHHHHHHHTT-------CC-CC--C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccchhhhccccc-------cc-cc--c----HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            6542111110000       00 00  0    01112334455667899999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.78  E-value=0.00011  Score=68.07  Aligned_cols=142  Identities=11%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeee-ccchHHHHH-HHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFT-HVPVLRNFV-DHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~-~~~~~~~iv-~~L~~~~~~~~~V~  105 (236)
                      ||-|.-+-++.|..+-........+.          ....++.|+|||||..--. ....++... ..+..  .. ++++
T Consensus        12 ~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~--ad-~il~   88 (436)
T 2hjg_A           12 PNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE--AD-VIIF   88 (436)
T ss_dssp             TTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH--CS-EEEE
T ss_pred             CCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh--CC-EEEE
Confidence            67777777777753210222211111          1134689999999863110 011122222 22222  33 6899


Q ss_pred             eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026584          106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL  185 (236)
Q Consensus       106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l  185 (236)
                      ++|+..-..+.+.-   +  ...+-+.+.|.+.|+||+|+.+...+..+                .              
T Consensus        89 vvD~~~~~~~~d~~---~--~~~l~~~~~pvilv~NK~D~~~~~~~~~~----------------~--------------  133 (436)
T 2hjg_A           89 MVNGREGVTAADEE---V--AKILYRTKKPVVLAVNKLDNTEMRANIYD----------------F--------------  133 (436)
T ss_dssp             EEETTTCSCHHHHH---H--HHHHTTCCSCEEEEEECCCC-----CCCS----------------S--------------
T ss_pred             EEeCCCCCCHHHHH---H--HHHHHHcCCCEEEEEECccCccchhhHHH----------------H--------------
Confidence            99986533333311   1  12233579999999999999643211100                0              


Q ss_pred             hhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          186 VDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                       ...++-.++|+|+.++.++.+|+..|-+.+.-
T Consensus       134 -~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          134 -YSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             -GGGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             -HHcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence             12244578999999999999999999888753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.77  E-value=0.00019  Score=66.42  Aligned_cols=121  Identities=16%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             CCEEEEeCCCceeeeecc------chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTHV------PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~------~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .++.++|||||-..-...      ....+....+...  . ++++++|+..-....+.   .  ....+.+.+.|.|.|+
T Consensus       228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a--d-~vllv~d~~~~~~~~~~---~--i~~~l~~~~~~~ilv~  299 (439)
T 1mky_A          228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA--D-VVVIVLDATQGITRQDQ---R--MAGLMERRGRASVVVF  299 (439)
T ss_dssp             EEEEESSCSCC-----------CCSCCHHHHHHHHHC--S-EEEEEEETTTCCCHHHH---H--HHHHHHHTTCEEEEEE
T ss_pred             EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC--C-EEEEEEeCCCCCCHHHH---H--HHHHHHHcCCCEEEEE
Confidence            357899999983211100      0011223444332  2 57888898653332221   1  1223345799999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ||+|+.+.. ..      .               ..++.+.+.+-+...+...++++|+.++.++.+|+..|.++..
T Consensus       300 NK~Dl~~~~-~~------~---------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  354 (439)
T 1mky_A          300 NKWDLVVHR-EK------R---------------YDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  354 (439)
T ss_dssp             ECGGGSTTG-GG------C---------------HHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ECccCCCch-hh------H---------------HHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            999997543 10      0               0111112222233334578999999999999999999988654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.77  E-value=0.00015  Score=57.48  Aligned_cols=110  Identities=14%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ...++|||||-+.       +.+.... -.+.. ++++++|+..   +..+  +..++..+.....-+.|.+.|+||+|+
T Consensus        60 ~~~l~Dt~G~~~~-------~~~~~~~-~~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  127 (186)
T 2bme_A           60 KLQIWDTAGQERF-------RSVTRSY-YRGAA-GALLVYDITS---RETYNALTNWLTDARMLASQNIVIILCGNKKDL  127 (186)
T ss_dssp             EEEEEEECCSGGG-------HHHHHTT-STTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEeCCCcHHH-------HHHHHHH-HhcCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence            4579999997542       1221111 12333 5889999764   3332  223333333333468999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  ..            ...       ++...++ +.++++|+.+++++++++..+-+.+
T Consensus       128 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          128 DADR-EV----T--FL------------EAS-------RFAQENE-LMFLETSALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            6432 11    0  00            000       1112223 5899999999999999999887654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.76  E-value=0.00031  Score=56.55  Aligned_cols=108  Identities=11%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh---cCCCEEEEeccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ---LELPHVNILSKM  143 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~---l~lP~InVlsK~  143 (236)
                      +-|+|||||-+ |..   +.   ..++  +.. ++++++|..   ++..|-..  ++-.+.....   -+.|.|.|.||+
T Consensus        71 l~i~Dt~G~~~-~~~---~~---~~~~--~~~-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~  137 (187)
T 3c5c_A           71 LRVMDTADLDT-PRN---CE---RYLN--WAH-AFLVVYSVD---SRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL  137 (187)
T ss_dssp             EEEEECCC----CCC---TH---HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred             EEEEECCCCCc-chh---HH---HHHh--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence            56899999865 322   12   2342  233 467778865   44444332  2222222221   489999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeec-cCcccHHHHHHHHHHhh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL-RKESSIRYVLSQIDNCI  216 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~-~d~~~i~~L~~~Id~~~  216 (236)
                      |+.... +.    .  .+            ...       ++...++ +.|+++|+ ++++++++++..|-+.+
T Consensus       138 Dl~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          138 DMAQYR-QV----T--KA------------EGV-------ALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             GGGGGC-SS----C--HH------------HHH-------HHHHHHT-CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred             chhhcC-cc----C--HH------------HHH-------HHHHHcC-CcEEEEeecCccccHHHHHHHHHHHH
Confidence            996432 11    0  00            001       1112233 48999999 89999999999886643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.76  E-value=6.5e-05  Score=62.29  Aligned_cols=110  Identities=14%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-....      ..+  .+.. ++++++|+..   +..|-  ..++..+.....-+.|.+.|+||+|+
T Consensus        63 ~~~i~Dt~G~~~~~~~~~------~~~--~~~d-~vilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl  130 (223)
T 3cpj_B           63 KAQIWDTAGQERYRAITS------AYY--RGAV-GALIVYDISK---SSSYENCNHWLSELRENADDNVAVGLIGNKSDL  130 (223)
T ss_dssp             EEEEECCTTTTTTTCCCG------GGT--TTCC-EEEEEEC-CC---HHHHHHHHHHHHHHHHHCC--CEEEEEECCGGG
T ss_pred             EEEEEECCCccchhhhHH------HHh--ccCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            468999999865321111      112  2333 5788899653   33332  22332232222347999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ++    .  .+            ...       ++...++ +.|+++|+++++++++++..|-+.+
T Consensus       131 ~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  174 (223)
T 3cpj_B          131 AHLR-AV----P--TE------------ESK-------TFAQENQ-LLFTETSALNSENVDKAFEELINTI  174 (223)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6532 11    0  00            000       1122233 5899999999999999998887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.75  E-value=8.7e-05  Score=59.71  Aligned_cols=110  Identities=12%  Similarity=0.166  Sum_probs=64.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-      ...-..+  .+.. ++++++|+..   +..+  +..++-.+.....-+.|.+.|.||+|+
T Consensus        73 ~~~i~Dt~G~~~~~------~~~~~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  140 (191)
T 3dz8_A           73 KLQIWDTAGQERYR------TITTAYY--RGAM-GFILMYDITN---EESFNAVQDWATQIKTYSWDNAQVILVGNKCDM  140 (191)
T ss_dssp             EEEEECHHHHHHCH------HHHHHHH--TTCC-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEeCCChHHHH------HHHHHHH--ccCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            47899999975421      1112223  2344 5888999753   3333  222322232222258999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... ..    .  .+            ...       ++...++ ..++++|+++++++++++..|-+.+
T Consensus       141 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (191)
T 3dz8_A          141 EEER-VV----P--TE------------KGQ-------LLAEQLG-FDFFEASAKENISVRQAFERLVDAI  184 (191)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6432 11    0  00            001       1112223 4899999999999999999887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.75  E-value=0.0012  Score=53.52  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=69.4

Q ss_pred             CEEEEeCCCceeeeec---cchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTH---VPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~---~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      ...++||||+.+.-..   +...++.+ ..++.....-.++++.|+..-.....   .-+  .....+.++|.+.|.||+
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---~~~--~~~~~~~~~~~~~v~nK~  147 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD---QQM--IEWAVDSNIAVLVLLTKA  147 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---HHH--HHHHHHTTCCEEEEEECG
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH---HHH--HHHHHHcCCCeEEEEecc
Confidence            5788999998642110   01122222 22332112234677888765322211   111  122235799999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      |+++.. +..                       +....+..++.++.. +.++|.|+.++.+++.++..|.+....+
T Consensus       148 D~~s~~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          148 DKLASG-ARK-----------------------AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             GGSCHH-HHH-----------------------HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCch-hHH-----------------------HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            987542 110                       001122234456664 7899999999999999999998876544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.75  E-value=4.6e-05  Score=70.66  Aligned_cols=110  Identities=14%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh---HHHHHHHHHHHHhhcCCC-EEEEecc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK---FISGCMASLSAMVQLELP-HVNILSK  142 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~---~is~~l~sls~m~~l~lP-~InVlsK  142 (236)
                      ..+.|+|||||..      ..+.....+  .... ++++++|+..- .-..   ......-.+.....+++| .|.|+||
T Consensus        84 ~~~~iiDtpG~~~------f~~~~~~~~--~~aD-~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK  153 (435)
T 1jny_A           84 YFFTIIDAPGHRD------FVKNMITGA--SQAD-AAILVVSAKKG-EYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK  153 (435)
T ss_dssp             CEEEECCCSSSTT------HHHHHHHTS--SCCS-EEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             eEEEEEECCCcHH------HHHHHHhhh--hhcC-EEEEEEECCCC-ccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence            4689999999765      222333333  2344 68999998751 0000   000111112222346775 6788999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR  206 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~  206 (236)
                      +|+....  .      +.            ..+......+.+++..++.    +.|+|+|+.+++++.
T Consensus       154 ~Dl~~~~--~------~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~  201 (435)
T 1jny_A          154 MDLTEPP--Y------DE------------KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  201 (435)
T ss_dssp             GGGSSST--T------CH------------HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccCCCcc--c------cH------------HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence            9997531  0      00            0112222233344444443    789999999999986

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.74  E-value=0.00014  Score=64.17  Aligned_cols=124  Identities=20%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-.+.  ...++.+....- .+.. ++++++|+..-...... ..+.-.+..+.  .-+.|.+.|+||+|+
T Consensus        53 ~l~i~Dt~G~~~~~--~~~~~~~~~~~~-~~ad-~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl  127 (307)
T 3r7w_A           53 TLNLWDCGGQDVFM--ENYFTKQKDHIF-QMVQ-VLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDL  127 (307)
T ss_dssp             EEEEEEECCSHHHH--HHHHTTTHHHHH-TTCS-EEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred             EEEEEECCCcHHHh--hhhhhhHHHHHh-ccCC-EEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccc
Confidence            46899999985431  001111111111 2344 68999998654332222 11111121111  238999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHH-HHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQ-IDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~-Id~~~~  217 (236)
                      .+.. .-..                   .+......+.++...++.  +.|++.|+.+ +++.+++.. +.+.+.
T Consensus       128 ~~~~-~r~~-------------------~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          128 VQLD-KREE-------------------LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             SCHH-HHHH-------------------HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             cchh-hhhH-------------------HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence            7632 1100                   001111223345567775  8999999999 566555544 343333

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.73  E-value=4.6e-05  Score=63.12  Aligned_cols=123  Identities=9%  Similarity=0.034  Sum_probs=69.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH---HHHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is---~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+.-....   .   .+  .+.. ++++++|+.   ++..|-.   .++-.+... .-+.|.+.|.||+|
T Consensus        76 ~l~i~Dt~G~~~~~~~~~---~---~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~D  142 (214)
T 3q3j_B           76 ELSLWDTSGSPYYDNVRP---L---CY--SDSD-AVLLCFDIS---RPETVDSALKKWRTEILDY-CPSTRVLLIGCKTD  142 (214)
T ss_dssp             EEEEEEECCSGGGTTTGG---G---GC--TTCS-EEEEEEETT---CTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGG
T ss_pred             EEEEEECCCCHhHHHHHH---H---Hc--CCCe-EEEEEEECc---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChh
Confidence            367899999865321111   0   12  2344 588899975   4444433   232222222 23899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~~~~  217 (236)
                      +.........+..        .-.....      .....++...++...|+++|++++++ +++++..+-+.+-
T Consensus       143 l~~~~~~~~~~~~--------~~~~~v~------~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          143 LRTDLSTLMELSH--------QKQAPIS------YEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             GGGCHHHHHHHHH--------TTCCCCC------HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             hccchhhhhhhcc--------cccCccC------HHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            9764311111000        0000000      01112334455666999999999998 9999999877654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.70  E-value=0.0004  Score=67.41  Aligned_cols=110  Identities=16%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +-|+|||||.. |     .....+.++..+   ++++++|+..-..+... ..+..    ....++|.|.|+||+|+...
T Consensus        73 l~liDTPGh~d-F-----~~ev~~~l~~aD---~aILVVDa~~gv~~qt~-~~~~~----~~~~~ipiIvViNKiDl~~a  138 (599)
T 3cb4_D           73 LNFIDTPGHVD-F-----SYEVSRSLAACE---GALLVVDAGQGVEAQTL-ANCYT----AMEMDLEVVPVLNKIDLPAA  138 (599)
T ss_dssp             EEEEECCCCGG-G-----HHHHHHHHHHCS---EEEEEEETTTCCCTHHH-HHHHH----HHHTTCEEEEEEECTTSTTC
T ss_pred             EEEEECCCchH-H-----HHHHHHHHHHCC---EEEEEEECCCCCCHHHH-HHHHH----HHHCCCCEEEeeeccCcccc
Confidence            46999999755 2     233444554433   58899998654444332 22222    23579999999999999653


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .  .        +....               .+.+.+ .+....++++|+.++.+++.|+..|-+.+.-
T Consensus       139 ~--~--------~~v~~---------------ei~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          139 D--P--------ERVAE---------------EIEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             C--H--------HHHHH---------------HHHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             c--H--------HHHHH---------------HHHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            2  1        00001               111111 1111358999999999999999999887653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.68  E-value=0.00012  Score=60.28  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=65.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.|+|||||-+.-..   .+   ..++  +.. ++++++|+..   +..+-  ..++..+.... -+.|.+.|.||+|+
T Consensus        65 ~~~i~Dt~G~~~~~~~---~~---~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl  131 (221)
T 3gj0_A           65 KFNVWDTAGQEKFGGL---RD---GYYI--QAQ-CAIIMFDVTS---RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI  131 (221)
T ss_dssp             EEEEEEECSGGGTSCC---CH---HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTS
T ss_pred             EEEEEeCCChHHHhHH---HH---HHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcc
Confidence            4688999998543221   11   1232  333 5788899764   33332  22222222221 28999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      .+.. ......                 .+          ....+ ..++++|++++.++++++..|-+.+.-.
T Consensus       132 ~~~~-~~~~~~-----------------~~----------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          132 KDRK-VKAKSI-----------------VF----------HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             SSCS-SCGGGC-----------------CH----------HHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             cccc-ccHHHH-----------------HH----------HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            7543 111000                 00          01112 5899999999999999999988865443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.65  E-value=0.00065  Score=64.86  Aligned_cols=67  Identities=18%  Similarity=0.271  Sum_probs=42.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.|+|||||..+ .     ......++.  .. ++|+++|+..-..+...   .+  +....+.++|.+.|+||+|+..
T Consensus        83 ~i~liDTPG~~df-~-----~~~~~~l~~--aD-~allVvDa~~g~~~~t~---~~--~~~~~~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           83 LINLLDTPGHADF-T-----EDTYRTLTA--VD-SALMVIDAAKGVEPRTI---KL--MEVCRLRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EEEEECCCCSTTC-C-----HHHHHGGGG--CS-EEEEEEETTTCSCHHHH---HH--HHHHHTTTCCEEEEEECTTSCC
T ss_pred             EEEEEECCCchhH-H-----HHHHHHHHh--CC-EEEEEEeCCCCCCHHHH---HH--HHHHHHcCCCEEEEEeCCCCcc
Confidence            5789999998662 2     123334433  33 58999999763333322   11  2334457899999999999975


Q ss_pred             c
Q 026584          148 N  148 (236)
Q Consensus       148 ~  148 (236)
                      .
T Consensus       149 ~  149 (528)
T 3tr5_A          149 R  149 (528)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.65  E-value=0.0003  Score=63.08  Aligned_cols=110  Identities=12%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+++|+||||..+      ....+   .  .... ++++++|+........ +.    .    -..+.|.+.|+||+|+
T Consensus       148 ~~~i~liDTpG~~~------~~~~~---~--~~aD-~vl~Vvd~~~~~~~~~-l~----~----~~~~~p~ivv~NK~Dl  206 (341)
T 2p67_A          148 GYDVVIVETVGVGQ------SETEV---A--RMVD-CFISLQIAGGGDDLQG-IK----K----GLMEVADLIVINKDDG  206 (341)
T ss_dssp             TCSEEEEEEECCTT------HHHHH---H--TTCS-EEEEEECC------CC-CC----H----HHHHHCSEEEECCCCT
T ss_pred             CCCEEEEeCCCccc------hHHHH---H--HhCC-EEEEEEeCCccHHHHH-HH----H----hhhcccCEEEEECCCC
Confidence            45899999999432      11111   2  2334 4788999853221110 00    0    1136799999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cC-CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YS-MVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~-lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... .+...+        .           ++...+ +.+..  -+ ...++|+|+.++++++.|+..|.+...
T Consensus       207 ~~~~-~~~~~~--------~-----------~l~~~l-~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          207 DNHT-NVAIAR--------H-----------MYESAL-HILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             TCHH-HHHHHH--------H-----------HHHHHH-HHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CChH-HHHHHH--------H-----------HHHHHH-HhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            6532 121100        0           111110 11110  01 257899999999999999999988654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.62  E-value=0.00048  Score=66.91  Aligned_cols=108  Identities=17%  Similarity=0.268  Sum_probs=68.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +-|+|||||.. |+     ....+.++..  . ++++++|+..-..+... ..+..    ....++|.|.|+||+|+...
T Consensus        75 inliDTPGh~d-F~-----~ev~r~l~~a--D-~aILVVDa~~gv~~qt~-~~~~~----a~~~~ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           75 LHLIDTPGHVD-FS-----YEVSRALAAC--E-GALLLIDASQGIEAQTV-ANFWK----AVEQDLVIIPVINKIDLPSA  140 (600)
T ss_dssp             EEEECCCCSGG-GH-----HHHHHHHHTC--S-EEEEEEETTTBCCHHHH-HHHHH----HHHTTCEEEEEEECTTSTTC
T ss_pred             EEEEECCCcHh-HH-----HHHHHHHHhC--C-EEEEEEECCCCccHHHH-HHHHH----HHHCCCCEEEEEeccCcccc
Confidence            34999999876 22     2334445433  3 58889998765444432 22222    23579999999999999643


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .  .        +...+++               .   +.+++  ..++++|+.++.++..|+..|-+.+.-
T Consensus       141 ~--~--------~~v~~el---------------~---~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          141 D--V--------DRVKKQI---------------E---EVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             C--H--------HHHHHHH---------------H---HTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             C--H--------HHHHHHH---------------H---HhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            2  1        1111111               1   11222  358999999999999999998877653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.60  E-value=0.00047  Score=64.77  Aligned_cols=139  Identities=16%  Similarity=0.166  Sum_probs=75.2

Q ss_pred             ChHHHHHHHHHHHHh-h----------HHHHHHHhcccCCCCEEEEeCCCceeeeeccchHHHH-HHHH-hh-CCCceEE
Q 026584           38 PNGGLIYCMEHLEDN-L----------DDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHL-KS-RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~n-~----------~~wl~~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~i-v~~L-~~-~~~~~~~  103 (236)
                      ||.|.-.-++.|... .          .++....+. .....+.|+||||+-+.   .+....+ +++. .. .+.. ++
T Consensus       233 ~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~---~~~ve~~gi~~~~~~~~~aD-~v  307 (462)
T 3geh_A          233 PNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV-VGGIPVQVLDTAGIRET---SDQVEKIGVERSRQAANTAD-LV  307 (462)
T ss_dssp             TTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE-ETTEEEEECC-----------------------CCCCSCS-EE
T ss_pred             CCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE-ECCEEEEEEECCccccc---hhHHHHHHHHHHhhhhhcCC-EE
Confidence            788998888888753 1          023332222 21346889999998662   2222221 1111 11 2334 58


Q ss_pred             EEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          104 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       104 V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      ++++|+..-.....   ..++.   .+ -+.|.|.|+||+|+.+.. ....                             
T Consensus       308 l~VvD~s~~~~~~~---~~i~~---~l-~~~piivV~NK~Dl~~~~-~~~~-----------------------------  350 (462)
T 3geh_A          308 LLTIDAATGWTTGD---QEIYE---QV-KHRPLILVMNKIDLVEKQ-LITS-----------------------------  350 (462)
T ss_dssp             EEEEETTTCSCHHH---HHHHH---HH-TTSCEEEEEECTTSSCGG-GSTT-----------------------------
T ss_pred             EEEeccCCCCCHHH---HHHHH---hc-cCCcEEEEEECCCCCcch-hhHH-----------------------------
Confidence            99999865322222   11111   11 247999999999997644 1110                             


Q ss_pred             HHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          184 ELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       184 ~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                        +.++ ....++++|++++++++.|+..|-+.+....
T Consensus       351 --~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          351 --LEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             --CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             --HHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence              0111 2357899999999999999999998876643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=97.59  E-value=0.00033  Score=66.24  Aligned_cols=110  Identities=13%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             CEEEEeCCCce-eeeecc--chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQI-ELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQi-Elf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||. +.-...  -..++....++..  . ++++++|+..-.+....   -++.   .+ -+.|.|.|+||+|
T Consensus       292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~a--D-~vl~VvD~s~~~s~~~~---~il~---~l-~~~piivV~NK~D  361 (482)
T 1xzp_A          292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKA--D-IVLFVLDASSPLDEEDR---KILE---RI-KNKRYLVVINKVD  361 (482)
T ss_dssp             EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHC--S-EEEEEEETTSCCCHHHH---HHHH---HH-TTSSEEEEEEECS
T ss_pred             EEEEEECCCccccchhhHHHHHHHHHHHHhhcc--c-EEEEEecCCCCCCHHHH---HHHH---Hh-cCCCEEEEEECcc
Confidence            57999999987 522111  1123444556443  3 58999997554333321   1111   12 2889999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      +.... ..        +    ++        .+       ... + -..++++|++++++++.|+..|.+.+.
T Consensus       362 L~~~~-~~--------~----~~--------~~-------~~~-~-~~~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          362 VVEKI-NE--------E----EI--------KN-------KLG-T-DRHMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             SCCCC-CH--------H----HH--------HH-------HHT-C-STTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             ccccc-CH--------H----HH--------HH-------Hhc-C-CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            96421 00        0    00        01       111 1 156899999999999999999988643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.59  E-value=0.00029  Score=65.22  Aligned_cols=143  Identities=12%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeee--ccchHHHHHHHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~--~~~~~~~iv~~L~~~~~~~~~V~  105 (236)
                      ||-|..+-++-|..+-.....+....          .....+.|+|||||.+.-.  ....++...... -.+.. ++++
T Consensus        10 pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-~~~ad-~il~   87 (439)
T 1mky_A           10 PNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM-IREAD-LVLF   87 (439)
T ss_dssp             TTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH-HTTCS-EEEE
T ss_pred             CCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH-HHhCC-EEEE
Confidence            78888888888874321222222221          1123578999999864211  112233322222 12344 6899


Q ss_pred             eecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          106 LLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       106 LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      ++|+..-..+. ..+..++      -+.+.|.+.|.||+|+.+..   .           ...       .       .+
T Consensus        88 V~D~~~~~~~~d~~i~~~l------~~~~~p~ilv~NK~D~~~~~---~-----------~~~-------~-------~~  133 (439)
T 1mky_A           88 VVDGKRGITKEDESLADFL------RKSTVDTILVANKAENLREF---E-----------REV-------K-------PE  133 (439)
T ss_dssp             EEETTTCCCHHHHHHHHHH------HHHTCCEEEEEESCCSHHHH---H-----------HHT-------H-------HH
T ss_pred             EEECCCCCCHHHHHHHHHH------HHcCCCEEEEEeCCCCcccc---H-----------HHH-------H-------HH
Confidence            99986532222 2333222      23589999999999984210   0           000       0       01


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      + ...++..++|+|+.++.++.+|+..|-+.+.
T Consensus       134 ~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          134 L-YSLGFGEPIPVSAEHNINLDTMLETIIKKLE  165 (439)
T ss_dssp             H-GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             H-HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence            1 1234457899999999999999999987765

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.56  E-value=0.0013  Score=64.69  Aligned_cols=43  Identities=7%  Similarity=0.047  Sum_probs=33.1

Q ss_pred             HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      +...+.+.+....++..++.|+.++.++..|+.+|-+.++--.
T Consensus       242 ~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~  284 (691)
T 1dar_A          242 LVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPL  284 (691)
T ss_dssp             HHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTT
T ss_pred             HHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChh
Confidence            4444555555556678888899999999999999999886543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.54  E-value=0.00014  Score=63.38  Aligned_cols=74  Identities=12%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             CCEEEEeCCCceeeeec------cchHHH-HHHHHhhCCCceEEEEeecCCC--ccchhh-HHHHHHHHHHHHhhcCCCE
Q 026584           67 DDYLVFDCPGQIELFTH------VPVLRN-FVDHLKSRNFNVCAVYLLDSQF--ITDVTK-FISGCMASLSAMVQLELPH  136 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~------~~~~~~-iv~~L~~~~~~~~~V~LiD~~~--~~dp~~-~is~~l~sls~m~~l~lP~  136 (236)
                      .++.++||||+.+....      ...+.. ....+.  +.. ++++++|+..  +..... .+      +...-..+.|.
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d-~iilvvd~~~~~~~~~~~~~i------~~~~~~~~~~~  201 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQN-AIIVAVTPANTDLANSDALQL------AKEVDPEGKRT  201 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHH--STT-EEEEEEEESSSCSTTCSHHHH------HHHHCSSCSSE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc--CCC-eEEEEEEecCcchhhhHHHHH------HHHhCCCCCcE
Confidence            47999999998653211      011222 233332  234 4777888632  222221 22      12223468999


Q ss_pred             EEEecccccccch
Q 026584          137 VNILSKMDLVTNK  149 (236)
Q Consensus       137 InVlsK~DLl~~~  149 (236)
                      +.|+||+|+....
T Consensus       202 i~v~NK~Dl~~~~  214 (315)
T 1jwy_B          202 IGVITKLDLMDKG  214 (315)
T ss_dssp             EEEEECTTSSCSS
T ss_pred             EEEEcCcccCCcc
Confidence            9999999998654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.50  E-value=0.002  Score=52.49  Aligned_cols=78  Identities=13%  Similarity=0.228  Sum_probs=43.2

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH----hhcCCCEEEEecc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM----VQLELPHVNILSK  142 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m----~~l~lP~InVlsK  142 (236)
                      ..+.++|||||-+   ++......+..-  ....-++++++|+....+.-.-+..++..+...    ..-+.|.+.|.||
T Consensus        55 ~~~~l~Dt~G~~~---~~~~~~~~~~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  129 (218)
T 1nrj_B           55 SGVTLVDFPGHVK---LRYKLSDYLKTR--AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK  129 (218)
T ss_dssp             SSCEEEECCCCGG---GTHHHHHHHHHH--GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred             ceEEEEECCCcHH---HHHHHHHHHHhc--cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEc
Confidence            3689999999844   222233322221  111135799999872111112222333333222    2358999999999


Q ss_pred             cccccch
Q 026584          143 MDLVTNK  149 (236)
Q Consensus       143 ~DLl~~~  149 (236)
                      +|+....
T Consensus       130 ~Dl~~~~  136 (218)
T 1nrj_B          130 SELFTAR  136 (218)
T ss_dssp             TTSTTCC
T ss_pred             hHhcccC
Confidence            9998653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.48  E-value=0.00078  Score=54.75  Aligned_cols=111  Identities=18%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~DL  145 (236)
                      ..++|||||-...   ..++.  ..++.  .. ++++++|+.   ++..|-  ..++..+..... .+.|.|.|.||+|+
T Consensus        74 l~i~Dt~g~~~~~---~~~~~--~~~~~--~d-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  142 (195)
T 3cbq_A           74 LVVYDIWEQGDAG---GWLRD--HCLQT--GD-AFLIVFSVT---DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL  142 (195)
T ss_dssp             EEEECCCCCSGGG---HHHHH--HHHHH--CS-EEEEEEETT---CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred             EEEEecCCCccch---hhhHH--Hhhcc--CC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence            4678999996532   11222  11222  23 578888864   344332  223322222111 48999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... ..    .  .+            ...       ++...++ ..|+++|+.+++++++++..|-+.+.
T Consensus       143 ~~~~-~v----~--~~------------~~~-------~~a~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~  187 (195)
T 3cbq_A          143 ARSR-EV----S--LE------------EGR-------HLAGTLS-CKHIETSAALHHNTRELFEGAVRQIR  187 (195)
T ss_dssp             TTTC-CS----C--HH------------HHH-------HHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccC-Cc----C--HH------------HHH-------HHHHHhC-CEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            6532 11    0  00            001       1112233 58999999999999999999877653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.44  E-value=0.00036  Score=57.31  Aligned_cols=117  Identities=12%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             HHHHHHhcccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC
Q 026584           55 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL  134 (236)
Q Consensus        55 ~wl~~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l  134 (236)
                      +|+.+.+......+++++|||||+-    .+..      . ..+. .++++++|+......   ...    ..  -..+.
T Consensus        97 ~~~~~~~~~~~~~d~iiidt~G~~~----~~~~------~-~~~~-~~~i~vvd~~~~~~~---~~~----~~--~~~~~  155 (221)
T 2wsm_A           97 HMIYHRLKKFSDCDLLLIENVGNLI----CPVD------F-DLGE-NYRVVMVSVTEGDDV---VEK----HP--EIFRV  155 (221)
T ss_dssp             HHHHTTGGGGTTCSEEEEEEEEBSS----GGGG------C-CCSC-SEEEEEEEGGGCTTH---HHH----CH--HHHHT
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCCC----CCch------h-cccc-CcEEEEEeCCCcchh---hhh----hh--hhhhc
Confidence            3444444322256899999999821    1110      1 1122 357889998654321   110    00  12478


Q ss_pred             CEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHH
Q 026584          135 PHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       135 P~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      |.+.|+||+|+.+... .      ..+.               +.    +.+..++ ...++++|+.++++++.++..|.
T Consensus       156 ~~iiv~NK~Dl~~~~~-~------~~~~---------------~~----~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~  209 (221)
T 2wsm_A          156 ADLIVINKVALAEAVG-A------DVEK---------------MK----ADAKLINPRAKIIEMDLKTGKGFEEWIDFLR  209 (221)
T ss_dssp             CSEEEEECGGGHHHHT-C------CHHH---------------HH----HHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred             CCEEEEecccCCcchh-h------HHHH---------------HH----HHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence            9999999999864210 0      0011               01    1111223 36899999999999999999998


Q ss_pred             Hhhcc
Q 026584          214 NCIQW  218 (236)
Q Consensus       214 ~~~~y  218 (236)
                      +.+..
T Consensus       210 ~~~~~  214 (221)
T 2wsm_A          210 GILNV  214 (221)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            86543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.44  E-value=0.00013  Score=65.70  Aligned_cols=120  Identities=9%  Similarity=0.130  Sum_probs=65.2

Q ss_pred             CCEEEEeCCCceeeee---ccc---hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFT---HVP---VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~---~~~---~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .++.|+||||+...-.   ..+   ..+.++...-+ +...++++++|+..-........ +   +...-..+.|.|.|+
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~~~~~~~~~-i---~~~~~~~~~~~i~V~  204 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALK-V---AKEVDPQGQRTIGVI  204 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSCGGGCHHHH-H---HHHHCTTCTTEEEEE
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCccchhHHHH-H---HHHhCcCCCceEEEe
Confidence            4799999999765322   111   23333333222 34456777788754222222110 0   122234689999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ||+|++........++.           ...             .-...+...+++.|+.+++++..++..+.+-
T Consensus       205 NK~Dl~~~~~~~~~~~~-----------~~~-------------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVLE-----------NKL-------------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             ECGGGSCTTCCCHHHHT-----------TCS-------------SCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             ccccccCcchhHHHHHh-----------CCc-------------ccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            99999864311111111           000             0001233567788888888888888877663

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.43  E-value=0.0016  Score=59.22  Aligned_cols=156  Identities=14%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CCC-hHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceE
Q 026584           36 LGP-NGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVC  102 (236)
Q Consensus        36 LGP-NGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~  102 (236)
                      +|| |.|..+-++.|.... -...+....          +....+.++||||++.-..+.  ...+...+.+.  ... +
T Consensus       185 vG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~--~aD-~  260 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK--YSD-A  260 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG--GSS-E
T ss_pred             ECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH--hCC-E
Confidence            465 446777777776432 111111110          112356889999986521221  11223333332  233 5


Q ss_pred             EEEeecCCCccc-hhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          103 AVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       103 ~V~LiD~~~~~d-p~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      +++++|+..-.. ...-+..+.-.+...-..+.|.|.|.||+|+.+..  ...                   + .....+
T Consensus       261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~--~~~-------------------~-~~~~~~  318 (364)
T 2qtf_A          261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD--LYK-------------------K-LDLVEK  318 (364)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC--HHH-------------------H-HHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch--HHH-------------------H-HHHHHH
Confidence            788999754221 11111111111111111478999999999997532  000                   0 000011


Q ss_pred             HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      ++.-+. ..-..++|+|+.++++++.|+..|.+.+..
T Consensus       319 l~~~l~-~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          319 LSKELY-SPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHC-SCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhc-CCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            111110 012468999999999999999999886654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.36  E-value=0.0035  Score=61.74  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=42.3

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.|+|||||..+ +     ......++..  . .+++++|+..-..+... .  +  +....+.++|.+.|+||+|+.
T Consensus        82 ~~i~liDTPG~~df-~-----~~~~~~l~~a--D-~aIlVvDa~~gv~~qt~-~--~--~~~~~~~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           82 HRINIIDTPGHVDF-T-----IEVERSMRVL--D-GAVMVYCAVGGVQPQSE-T--V--WRQANKYKVPRIAFVNKMDRM  147 (704)
T ss_pred             eeEEEEeCCCccch-H-----HHHHHHHHHC--C-EEEEEEeCCCCCcHHHH-H--H--HHHHHHcCCCEEEEEeCCCcc
Confidence            45789999999762 1     1223344333  3 58889998753322221 1  1  122335689999999999997


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      ..
T Consensus       148 ~~  149 (704)
T 2rdo_7          148 GA  149 (704)
T ss_pred             cc
Confidence            53

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.35  E-value=0.0025  Score=62.69  Aligned_cols=43  Identities=7%  Similarity=0.087  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      +...+.+.+....++..+..|+.++.++..|+.+|-+.++--.
T Consensus       240 ~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~  282 (693)
T 2xex_A          240 LKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPL  282 (693)
T ss_dssp             HHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGG
T ss_pred             HHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCch
Confidence            4445555566666778888899999999999999999887543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.35  E-value=0.00016  Score=72.12  Aligned_cols=120  Identities=9%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             CCEEEEeCCCceeeeec---c---chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTH---V---PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~---~---~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .+.+|+||||-...-+.   .   ....+++..-.+. -.-++++++|+..-....+...    -+......+.|.|.|+
T Consensus       150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~-~aDlIL~VVDAs~~~~~~d~l~----ll~~L~~~g~pvIlVl  224 (772)
T 3zvr_A          150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK-ENCLILAVSPANSDLANSDALK----IAKEVDPQGQRTIGVI  224 (772)
T ss_dssp             CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTS-TTEEEEEEEETTSCSSSCHHHH----HHHHHCTTCSSEEEEE
T ss_pred             CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhc-CCcEEEEEEcCCCCcchhHHHH----HHHHHHhcCCCEEEEE
Confidence            36899999993332110   1   1233333332232 3346899999976333333210    0223345689999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ||+|+++.......++.           ...             .-...+...++|+|+.++++++.|...|.+.
T Consensus       225 NKiDlv~~~~~~~~il~-----------~~~-------------~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          225 TKLDLMDEGTDARDVLE-----------NKL-------------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             ECTTSSCTTCCSHHHHT-----------TCS-------------SCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             eCcccCCcchhhHHHHH-----------HHh-------------hhhhccCCceEEecccccccchhHHHHHHHH
Confidence            99999865411111000           000             0002345678899999999999999999874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.30  E-value=0.00063  Score=58.31  Aligned_cols=77  Identities=13%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             CEEEEeCCCceeeeeccchHHH-HHHHHhhCCCceEEEEee--cCCCccchhhHHHHHHHHHHHHhh--cCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYLL--DSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~-iv~~L~~~~~~~~~V~Li--D~~~~~dp~~~is~~l~sls~m~~--l~lP~InVlsK  142 (236)
                      .+.|+|||||.+.-.......+ +-+.+...+.. ++++++  |+..+......+   +-.+.....  ...|.+.|+||
T Consensus        85 ~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~-~il~V~~~d~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivv~nK  160 (262)
T 3def_A           85 TINIIDTPGLVEAGYVNHQALELIKGFLVNRTID-VLLYVDRLDVYAVDELDKQV---VIAITQTFGKEIWCKTLLVLTH  160 (262)
T ss_dssp             EEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC-EEEEEEESSCSCCCHHHHHH---HHHHHHHHCGGGGGGEEEEEEC
T ss_pred             eEEEEECCCCCCcccchHHHHHHHHHHHhcCCCC-EEEEEEcCCCCCCCHHHHHH---HHHHHHHhchhhhcCEEEEEeC
Confidence            5789999999885444333333 33333222333 466664  443333222122   212222221  22499999999


Q ss_pred             cccccc
Q 026584          143 MDLVTN  148 (236)
Q Consensus       143 ~DLl~~  148 (236)
                      +|+...
T Consensus       161 ~Dl~~~  166 (262)
T 3def_A          161 AQFSPP  166 (262)
T ss_dssp             TTCCCS
T ss_pred             cccCCC
Confidence            999743

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.25  E-value=0.0019  Score=59.97  Aligned_cols=119  Identities=17%  Similarity=0.287  Sum_probs=74.4

Q ss_pred             CCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~  143 (236)
                      ..+.+.|+||++|--. .......+.+.+++  .+ ++++++|+.  .+|-.-+|...--+....  -...|.|.|+||+
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~er--a~-~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKl  279 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIAR--TR-VLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKV  279 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTS--SS-EEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHH--HH-hhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECC
Confidence            3578999999987321 11122334444422  33 588999987  556555665544333332  2478999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      |+.... .+..                           +.+.+...+ ..++++|+.++++++.|+..|-+.+.-.
T Consensus       280 Dl~~~~-~~~~---------------------------l~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          280 DLLEEE-AVKA---------------------------LADALAREG-LAVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             TTSCHH-HHHH---------------------------HHHHHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             ChhhHH-HHHH---------------------------HHHHHHhcC-CeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            986431 1111                           111112222 5789999999999999999998877543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.24  E-value=0.00044  Score=62.70  Aligned_cols=86  Identities=17%  Similarity=0.301  Sum_probs=43.4

Q ss_pred             EEEEeecC-CCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          102 CAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       102 ~~V~LiD~-~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      ++||++++ .....+.+.  .++    -.+.-++|.|.|+||+|+.... ++..                       +..
T Consensus       148 ~~vy~I~~~~~~l~~~d~--~~~----~~l~~~~piIlV~NK~Dl~~~~-ev~~-----------------------~k~  197 (361)
T 2qag_A          148 CCFYFISPFGHGLKPLDV--AFM----KAIHNKVNIVPVIAKADTLTLK-ERER-----------------------LKK  197 (361)
T ss_dssp             EEEEEECSSSSSCCHHHH--HHH----HHTCS-SCEEEEEECCSSSCHH-HHHH-----------------------HHH
T ss_pred             EEEEEEecCCCCcchhHH--HHH----HHhccCCCEEEEEECCCCCCHH-HHHH-----------------------HHH
Confidence            47777775 333333332  111    1224579999999999997644 2221                       112


Q ss_pred             HHHHHhhccCCeeEEEeeccCccc---HHHHHHHHHHhhcc
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESS---IRYVLSQIDNCIQW  218 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~---i~~L~~~Id~~~~y  218 (236)
                      .+.+.+..++ +.++++|+.++++   +..+...|.+.+++
T Consensus       198 ~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          198 RILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence            2233444444 4777888776654   45566666666655

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.24  E-value=0.00019  Score=68.91  Aligned_cols=115  Identities=11%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.++|||||-.+-..+.      ..++  ... ++++++|+.--..|...-     .+......++|.|.|+||+|+..
T Consensus        53 ~i~~iDTPGhe~f~~~~~------~~~~--~aD-~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiIVViNKiDl~~  118 (537)
T 3izy_P           53 KITFLDTPGHAAFSAMRA------RGTQ--VTD-IVILVVAADDGVMKQTVE-----SIQHAKDAHVPIVLAINKCDKAE  118 (537)
T ss_dssp             CCBCEECSSSCCTTTSBB------SSSB--SBS-SCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEEECCBSGGGTT
T ss_pred             EEEEEECCChHHHHHHHH------HHHc--cCC-EEEEEEECCCCccHHHHH-----HHHHHHHcCCcEEEEEecccccc
Confidence            588999999754222111      1121  223 478899987644444332     23344457899999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      ..  ......    .+.. .               -...++++. +.++|+|+.+++++..|+..|.+..+.
T Consensus       119 ~~--~~~v~~----~l~~-~---------------~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          119 AD--PEKVKK----ELLA-Y---------------DVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             TS--CCSSSS----HHHH-T---------------TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             cc--hHHHHH----HHHh-h---------------hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence            32  111100    0000 0               011345554 799999999999999999999887654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.21  E-value=0.00027  Score=67.02  Aligned_cols=111  Identities=13%  Similarity=0.174  Sum_probs=61.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      -.+.++|||||-+....+.   .   .++.  .+ ++++++|+....+...++    -.+..+ .-+.|.|.|.||+|+.
T Consensus        98 ~~~~i~Dt~G~e~~~~~~~---~---~l~~--~d-~ii~V~D~s~~~~~~~~~----~~l~~~-~~~~pvilV~NK~Dl~  163 (535)
T 3dpu_A           98 CLFHFWDFGGQEIMHASHQ---F---FMTR--SS-VYMLLLDSRTDSNKHYWL----RHIEKY-GGKSPVIVVMNKIDEN  163 (535)
T ss_dssp             CEEEEECCCSCCTTTTTCH---H---HHHS--SE-EEEEEECGGGGGGHHHHH----HHHHHH-SSSCCEEEEECCTTTC
T ss_pred             EEEEEEECCcHHHHHHHHH---H---HccC--Cc-EEEEEEeCCCchhHHHHH----HHHHHh-CCCCCEEEEEECCCcc
Confidence            3589999999766443221   1   1322  33 689999986543322222    122221 1259999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +.. ++.      .+.                   +.+.....+ ..++++|+.++++++.|+..|-+.+.-
T Consensus       164 ~~~-~v~------~~~-------------------~~~~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          164 PSY-NIE------QKK-------------------INERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             TTC-CCC------HHH-------------------HHHHCGGGT-TCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             ccc-ccC------HHH-------------------HHHHHHhcC-CceEEEecCcccCHHHHHHHHHHHHhc
Confidence            543 110      000                   001122222 369999999999999999999887654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.19  E-value=0.0018  Score=63.66  Aligned_cols=128  Identities=9%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ....|+||||+.+.-.   ......+++..  .. +++|++|+..-......-   ++ .....+.+.|.+.|+||+|+.
T Consensus       174 ~~l~LiDTPGl~~~~~---~~~~~~~~i~~--aD-~vL~Vvda~~~~s~~e~~---~l-~~~l~~~~~~iiiVlNK~Dl~  243 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEA---RNELSLGYVNN--CH-AILFVMRASQPCTLGERR---YL-ENYIKGRGLTVFFLVNAWDQV  243 (695)
T ss_dssp             TTEEEEECCCHHHHHT---CHHHHTHHHHS--SS-EEEEEEETTSTTCHHHHH---HH-HHHTTTSCCCEEEEEECGGGG
T ss_pred             CCeEEEECCCCCchhh---HHHHHHHHHHh--CC-EEEEEEeCCCccchhHHH---HH-HHHHHhhCCCEEEEEECcccc
Confidence            3689999999776322   22333455533  33 589999986543333211   01 112234689999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--------CCeeEEEeecc--------------Cccc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--------SMVSFMPLDLR--------------KESS  204 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--------~lv~f~pls~~--------------d~~~  204 (236)
                      ... .+.   ..+.+.+.. ..       ..+...+...+..+        ....++|+|+.              ++.+
T Consensus       244 ~~~-~~~---~ee~e~l~~-~~-------~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~G  311 (695)
T 2j69_A          244 RES-LID---PDDVEELQA-SE-------NRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTG  311 (695)
T ss_dssp             GGG-CSS---TTCHHHHHH-HH-------HHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSS
T ss_pred             ccc-ccC---hhhHHHHHH-HH-------HHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccC
Confidence            542 010   001111100 00       01111111222222        12478999999              9999


Q ss_pred             HHHHHHHHHHhh
Q 026584          205 IRYVLSQIDNCI  216 (236)
Q Consensus       205 i~~L~~~Id~~~  216 (236)
                      +..|...+.+.+
T Consensus       312 i~~L~~~L~~~l  323 (695)
T 2j69_A          312 FPKFMDSLNTFL  323 (695)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.17  E-value=0.0015  Score=62.24  Aligned_cols=68  Identities=15%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.|+|||||.. |.     ......+..  .. ++|+++|+..-..+..     ...+......++|.+.|+||+|+.
T Consensus        82 ~~i~liDTPG~~d-f~-----~~~~~~l~~--aD-~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           82 CLVNLLDTPGHED-FS-----EDTYRTLTA--VD-CCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRD  147 (529)
T ss_dssp             EEEEEECCCCSTT-CC-----HHHHHGGGG--CS-EEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSC
T ss_pred             eEEEEEECCCChh-HH-----HHHHHHHHH--CC-EEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCc
Confidence            3579999999854 22     223334433  33 5899999865332221     111222334699999999999997


Q ss_pred             cc
Q 026584          147 TN  148 (236)
Q Consensus       147 ~~  148 (236)
                      ..
T Consensus       148 ~~  149 (529)
T 2h5e_A          148 IR  149 (529)
T ss_dssp             CS
T ss_pred             cc
Confidence            64

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.14  E-value=0.0088  Score=58.43  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=41.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .+-|+|||||..+      .......++..+   .+++++|+..-.++..-   -+  +....+.++|.|.|+||+|+.
T Consensus        75 ~~nliDTpG~~~f------~~~~~~~l~~ad---~~ilVvD~~~g~~~qt~---~~--~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           75 RVFLLDAPGYGDF------VGEIRGALEAAD---AALVAVSAEAGVQVGTE---RA--WTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEEECCCSGGG------HHHHHHHHHHCS---EEEEEEETTTCSCHHHH---HH--HHHHHHTTCCEEEEEECGGGC
T ss_pred             EEEEEeCCCccch------HHHHHHHHhhcC---cEEEEEcCCcccchhHH---HH--HHHHHHccCCEEEEecCCchh
Confidence            4689999998652      233445554333   47888997654444322   11  222234699999999999997

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.12  E-value=0.0015  Score=60.69  Aligned_cols=140  Identities=11%  Similarity=0.188  Sum_probs=71.5

Q ss_pred             ChHHHHHHHHHHHHh-hHHHHHHHhc----------ccCCCCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEE
Q 026584           38 PNGGLIYCMEHLEDN-LDDWLAEELD----------NYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVY  105 (236)
Q Consensus        38 PNGalv~~me~l~~n-~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~  105 (236)
                      ||.|.-+-++.|... + ........          ......+.|+||||..+--. ....++......-+ +.. ++++
T Consensus        32 ~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~-~ad-~il~  108 (456)
T 4dcu_A           32 PNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD-EAD-VIIF  108 (456)
T ss_dssp             SSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH-HCS-EEEE
T ss_pred             CCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh-hCC-EEEE
Confidence            677777777776532 1 11111111          01134689999999542100 01122222222111 233 6899


Q ss_pred             eecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584          106 LLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE  184 (236)
Q Consensus       106 LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~  184 (236)
                      ++|+..-..+. ..+.      ..+-+.+.|.+.|.||+|+.+......++                             
T Consensus       109 VvD~~~~~~~~d~~l~------~~l~~~~~pvilV~NK~D~~~~~~~~~e~-----------------------------  153 (456)
T 4dcu_A          109 MVNGREGVTAADEEVA------KILYRTKKPVVLAVNKLDNTEMRANIYDF-----------------------------  153 (456)
T ss_dssp             EEESSSCSCHHHHHHH------HHHTTCCSCEEEEEECC---------CCS-----------------------------
T ss_pred             EEeCCCCCChHHHHHH------HHHHHcCCCEEEEEECccchhhhhhHHHH-----------------------------
Confidence            99986533333 2222      22345799999999999986432111111                             


Q ss_pred             HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                        ...++-..+|+|+..+.++.+|+..+-+.+.
T Consensus       154 --~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          154 --YSLGFGEPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             --GGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             --HHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence              1123335679999999999999999977654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0016  Score=51.83  Aligned_cols=76  Identities=16%  Similarity=0.297  Sum_probs=45.4

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh----cCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ----LELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~----l~lP~InVl  140 (236)
                      ..+.++|||||.+.   +......+..... .. -++++++|+.  .++..+-.  .++..+.....    -+.|.+.|+
T Consensus        91 ~~~~l~Dt~G~~~~---~~~~~~~~~~~~~-~~-~~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  163 (193)
T 2ged_A           91 SGVTLVDFPGHVKL---RYKLSDYLKTRAK-FV-KGLIFMVDST--VDPKKLTTTAEFLVDILSITESSCENGIDILIAC  163 (193)
T ss_dssp             TTCSEEEETTCCBS---SCCHHHHHHHHGG-GE-EEEEEEEETT--CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred             CeEEEEECCCCchH---HHHHHHHHHhhcc-cC-CEEEEEEECC--CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence            46789999998653   2333333333211 12 3689999987  23433322  33333333322    389999999


Q ss_pred             cccccccch
Q 026584          141 SKMDLVTNK  149 (236)
Q Consensus       141 sK~DLl~~~  149 (236)
                      ||+|+.+..
T Consensus       164 nK~Dl~~~~  172 (193)
T 2ged_A          164 NKSELFTAR  172 (193)
T ss_dssp             ECTTSTTCC
T ss_pred             EchHhcCCC
Confidence            999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.08  E-value=0.0017  Score=55.81  Aligned_cols=78  Identities=13%  Similarity=0.116  Sum_probs=40.0

Q ss_pred             CEEEEeCCCceeeeeccc-hHHHHHHHHhhCCCceEEEEeecC--CCccchhhHHHHHHHHHHHHh--hcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDS--QFITDVTKFISGCMASLSAMV--QLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~-~~~~iv~~L~~~~~~~~~V~LiD~--~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK  142 (236)
                      .+.|+|||||.+.-.... ....+-+.+...+.. +++|++|.  ..+.....   .++-.+.-..  +...|.+.|+||
T Consensus        88 ~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d-~il~v~~~d~~~~~~~~~---~~~~~l~~~~~~~~~~~iivV~nK  163 (270)
T 1h65_A           88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTID-VLLYVDRLDAYRVDNLDK---LVAKAITDSFGKGIWNKAIVALTH  163 (270)
T ss_dssp             EEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC-EEEEEEESSCCCCCHHHH---HHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             EEEEEECCCCCCCccchHHHHHHHHHHhhcCCCC-EEEEEEeCCCCcCCHHHH---HHHHHHHHHhCcccccCEEEEEEC
Confidence            589999999887432222 222222222212333 56777544  32322111   2222222221  122699999999


Q ss_pred             cccccch
Q 026584          143 MDLVTNK  149 (236)
Q Consensus       143 ~DLl~~~  149 (236)
                      +|+....
T Consensus       164 ~Dl~~~~  170 (270)
T 1h65_A          164 AQFSPPD  170 (270)
T ss_dssp             CSCCCGG
T ss_pred             cccCCcC
Confidence            9997643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.06  E-value=0.0033  Score=50.15  Aligned_cols=113  Identities=14%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhH--HHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKF--ISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~--is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..-+.|||||-+....+   +   ..+..  .. ++++++|..   ++ +.+  +..++..+... .-+.|.+.|.||+|
T Consensus        57 ~~~i~Dt~G~~~~~~~~---~---~~~~~--~~-~~i~v~d~~---~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~D  123 (184)
T 2zej_A           57 VLNVWDFAGREEFYSTH---P---HFMTQ--RA-LYLAVYDLS---KGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLD  123 (184)
T ss_dssp             EEEEEEECSHHHHHTTS---H---HHHHH--SE-EEEEEEEGG---GCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGG
T ss_pred             EEEEEecCCCHHHHHhh---H---HHccC--Cc-EEEEEEeCC---cchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCC
Confidence            46789999986532211   1   12322  22 455667753   33 222  22222222111 13799999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCe---eEEEeeccCcc-cHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV---SFMPLDLRKES-SIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv---~f~pls~~d~~-~i~~L~~~Id~~~  216 (236)
                      +.... ......                   .+   ...++.+.+++-   .|+++|++++. +++.|+..|-+.+
T Consensus       124 l~~~~-~~~~~~-------------------~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~  176 (184)
T 2zej_A          124 VSDEK-QRKACM-------------------SK---ITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES  176 (184)
T ss_dssp             GCCHH-HHHHHH-------------------HH---HHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             cccch-hhHHHH-------------------HH---HHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence            96432 111000                   00   011233445543   59999999995 9999999987654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.01  E-value=0.0037  Score=52.45  Aligned_cols=111  Identities=13%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.||+||-+....    +.  .+.  .+.. +++++.|..   ++..|-.  .++..+.....-++|.|.|-||+||.
T Consensus        64 l~iwDtaGqe~~~~l----~~--~~~--~~a~-~~ilv~di~---~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~  131 (216)
T 4dkx_A           64 LQLWDTAGLERFRSL----IP--SYI--RDSA-AAVVVYDIT---NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA  131 (216)
T ss_dssp             EEEECCSCTTTCGGG----HH--HHH--TTCS-EEEEEEETT---CHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred             EEEEECCCchhhhhH----HH--HHh--cccc-EEEEEeecc---hhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence            468999999653221    11  122  2333 466666643   4444332  23333333344579999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      ... .+    .  .    +     .   -.       ++...++ ..|+..||+++++|++++..|-+.+..
T Consensus       132 ~~r-~V----~--~----~-----e---~~-------~~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          132 DKR-QV----S--I----E-----E---GE-------RKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             GGC-CS----C--H----H-----H---HH-------HHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred             hcC-cc----c--H----H-----H---Hh-------hHHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            432 11    1  0    0     0   01       1222344 479999999999999999999877643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.01  E-value=0.0037  Score=56.24  Aligned_cols=111  Identities=13%  Similarity=0.061  Sum_probs=59.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+++++||||.   ...  . ..    +. .... ++++++|+..-.+... +..     .   -++.|.+.|+||+|+
T Consensus       166 ~~~~iliDT~Gi---~~~--~-~~----l~-~~~d-~vl~V~d~~~~~~~~~-i~~-----~---il~~~~ivVlNK~Dl  224 (349)
T 2www_A          166 GYDIILIETVGV---GQS--E-FA----VA-DMVD-MFVLLLPPAGGDELQG-IKR-----G---IIEMADLVAVTKSDG  224 (349)
T ss_dssp             TCSEEEEECCCC-----C--H-HH----HH-TTCS-EEEEEECCC---------------------CCSCSEEEECCCSG
T ss_pred             CCCEEEEECCCc---chh--h-hh----HH-hhCC-EEEEEEcCCcchhHHH-hHH-----H---HHhcCCEEEEeeecC
Confidence            457999999993   211  1 11    21 2344 4788999864221111 100     0   147899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.. ....                   ...++...+..+..  ......++++|+.++++++.|...|.+..+
T Consensus       225 ~~~~-~~~~-------------------~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          225 DLIV-PARR-------------------IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             GGHH-HHHH-------------------HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCch-hHHH-------------------HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            6432 1110                   00111111100000  001247899999999999999999988664

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.97  E-value=0.00091  Score=60.02  Aligned_cols=78  Identities=17%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             CCEEEEeCCCceeeeec---cch---HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELFTH---VPV---LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~---~~~---~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .++.|+||||+...-..   ...   +..++...-+ +.+ ++++++|+.......   +..+.-+...-..+.|.|.|+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~-~~d-~iilvv~~~~~~~~~---~~~~~l~~~~~~~~~~~i~V~  210 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIE-KPN-CIILAISPANQDLAT---SDAIKISREVDPSGDRTFGVL  210 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHH-SSS-EEEEEEEETTSCGGG---CHHHHHHHHSCTTCTTEEEEE
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhh-cCC-eEEEEeecccCCcCC---HHHHHHHHHhcccCCCEEEEE
Confidence            36899999997764221   111   1222222212 334 466667754321111   111111222334688999999


Q ss_pred             cccccccch
Q 026584          141 SKMDLVTNK  149 (236)
Q Consensus       141 sK~DLl~~~  149 (236)
                      ||+|++...
T Consensus       211 nK~Dl~~~~  219 (360)
T 3t34_A          211 TKIDLMDKG  219 (360)
T ss_dssp             ECGGGCCTT
T ss_pred             eCCccCCCc
Confidence            999998643

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.97  E-value=0.00028  Score=67.17  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+.++|||||-.+...+.      ..+  .... ++++++|+..-..|...-.     +......++|.|.|+||+|+.
T Consensus        51 ~~i~~iDTPGhe~f~~~~~------~~~--~~aD-~aILVVda~~g~~~qT~e~-----l~~~~~~~vPiIVviNKiDl~  116 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRA------RGA--QATD-IVVLVVAADDGVMPQTIEA-----IQHAKAAQVPVVVAVNKIDKP  116 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBC------SSS--BSCS-SEEEEEETTTBSCTTTHHH-----HHHHHHTTCCEEEEEECSSSS
T ss_pred             EEEEEEECCCcHHHHHHHH------HHH--hhCC-EEEEEeecccCccHHHHHH-----HHHHHhcCceEEEEEEecccc
Confidence            4689999999865322211      111  1222 4788899865334443322     122234799999999999996


Q ss_pred             cch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHH
Q 026584          147 TNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       147 ~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      ... ..+...+.           ...            .+.+.++ -+.|+|+|+.+++++.+|+..|-.
T Consensus       117 ~~~~~~v~~~l~-----------~~~------------~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          117 EADPDRVKNELS-----------QYG------------ILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTCCCCTTCCCC-----------CCC------------CCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             ccCHHHHHHHHH-----------Hhh------------hhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            421 01211111           000            0112344 379999999999999999998864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.94  E-value=0.0017  Score=56.93  Aligned_cols=100  Identities=14%  Similarity=0.252  Sum_probs=58.7

Q ss_pred             eCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhH
Q 026584           73 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKE  151 (236)
Q Consensus        73 D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~  151 (236)
                      .+||++.     ...+.+.+.+++.  . ++++++|+..-.... ..+..++        -+.|.+.|+||+||+... .
T Consensus         5 w~PGhm~-----ka~~~~~~~l~~a--D-vVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~-~   67 (282)
T 1puj_A            5 WFPGHMA-----KARREVTEKLKLI--D-IVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA-V   67 (282)
T ss_dssp             ----CTT-----HHHHHHHHHGGGC--S-EEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH-H
T ss_pred             CCchHHH-----HHHHHHHHHHhhC--C-EEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH-H
Confidence            5788642     2335566666443  3 589999986422111 1232221        489999999999998633 2


Q ss_pred             hhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          152 IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       152 l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .+.|.                           +..++.+ +.++++|+.++.++..|...+.+.+.
T Consensus        68 ~~~~~---------------------------~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           68 TQQWK---------------------------EHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHH---------------------------HHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHH---------------------------HHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence            22111                           1112222 37889999999999999988877653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.90  E-value=0.005  Score=51.33  Aligned_cols=110  Identities=13%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      ..++||+||-..       .+.+......+.. +++++.|.   +++..|-..-  ..-+.-. ..-+.|.|.|.||+||
T Consensus        89 l~~~Dt~g~~~~-------~~~l~~~~~~~a~-~~ilVydv---t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL  157 (211)
T 2g3y_A           89 IILLDMWENKGE-------NEWLHDHCMQVGD-AYLIVYSI---TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  157 (211)
T ss_dssp             EEEECCTTTTHH-------HHHHHHCCCCCCS-EEEEEEET---TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred             EEEeecCCCcch-------hhhHHHHHHhhCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence            467899997542       1222222112222 45666663   3455544321  1111111 1137999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.. ++    .  .    +     ..   .    .++   ..++ ..|+++|+++++++++++..|-+.+
T Consensus       158 ~~~r-~v----~--~----~-----e~---~----~~a---~~~~-~~~~e~SAk~g~~v~elf~~l~~~i  201 (211)
T 2g3y_A          158 VRCR-EV----S--V----S-----EG---R----ACA---VVFD-CKFIETSAAVQHNVKELFEGIVRQV  201 (211)
T ss_dssp             GGGC-CS----C--H----H-----HH---H----HHH---HHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcCc-eE----e--H----H-----HH---H----HHH---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6432 11    0  0    0     00   0    111   1223 5799999999999999999887755

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.65  E-value=0.0041  Score=60.53  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..+=|+||||.      .+......+.|+-.+   .+|.++||.-=-.+..--     .+....+.++|.|.++||+|..
T Consensus        67 ~~iNlIDTPGH------~DF~~Ev~raL~~~D---gavlVVDa~~GV~~qT~~-----v~~~a~~~~lp~i~~INKmDr~  132 (638)
T 3j25_A           67 TKVNIIDTPGH------MDFLAEVYRSLSVLD---GAILLISAKDGVQAQTRI-----LFHALRKMGIPTIFFINKIDQN  132 (638)
T ss_dssp             CBCCCEECCCS------SSTHHHHHHHHTTCS---EEECCEESSCTTCSHHHH-----HHHHHHHHTCSCEECCEECCSS
T ss_pred             EEEEEEECCCc------HHHHHHHHHHHHHhC---EEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCeEEEEeccccc
Confidence            35679999994      445556667774344   488899996543333321     1344556799999999999987


Q ss_pred             cch-----hHhhhhccc-------------------cHHHHHHHhhhc---chhH--------HHHHHHHHHHHhhccCC
Q 026584          147 TNK-----KEIEDYLNP-------------------ESQFLLSELNQH---MAPQ--------FAKLNKSLIELVDEYSM  191 (236)
Q Consensus       147 ~~~-----~~l~~~l~~-------------------~~~~l~~~l~~~---~~~~--------~~~l~~~l~~li~d~~l  191 (236)
                      ..+     .++.+.+..                   ....+.+.+.+.   .-.+        ...+...+...+....+
T Consensus       133 ~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (638)
T 3j25_A          133 GIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSL  212 (638)
T ss_dssp             SCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSC
T ss_pred             cCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccc
Confidence            532     012111110                   000011111000   0000        01222333333444555


Q ss_pred             eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          192 VSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       192 v~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      +.....|+.++.++..|+..|-+.+.-
T Consensus       213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p~  239 (638)
T 3j25_A          213 FPLYHGSAKSNIGIDNLIEVITNKFYS  239 (638)
T ss_dssp             CCCCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred             ccccccccccCCCchhHhhhhhccccC
Confidence            666677999999999999998776543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.54  E-value=0.0038  Score=59.75  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             CEEEEeCCCceeeeec--cch--HHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTH--VPV--LRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~--~~~--~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      ++.|+||||+.+-...  ...  ...+.. .+...  . ++++++|+....-..... .+   +....+.+.|.+.|+||
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a--D-~il~VvDa~~~~~~~~~~-~~---l~~l~~~~~pvilVlNK  227 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV--D-LIILLFDAHKLEISDEFS-EA---IGALRGHEDKIRVVLNK  227 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHC--S-EEEEEEETTSCCCCHHHH-HH---HHHTTTCGGGEEEEEEC
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC--C-EEEEEEeCCcCCCCHHHH-HH---HHHHHhcCCCEEEEEEC
Confidence            5899999997652110  000  223322 23333  3 589999996531111111 11   22233467899999999


Q ss_pred             cccccch
Q 026584          143 MDLVTNK  149 (236)
Q Consensus       143 ~DLl~~~  149 (236)
                      +|++...
T Consensus       228 ~Dl~~~~  234 (550)
T 2qpt_A          228 ADMVETQ  234 (550)
T ss_dssp             GGGSCHH
T ss_pred             CCccCHH
Confidence            9998654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.53  E-value=0.047  Score=52.14  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+=|+||||.+.      -.-...+.|+-.+   .+|.++||.-=-.+..--     -+....+.++|.|.++||+|...
T Consensus       101 ~iNlIDTPGHvD------F~~Ev~raL~~~D---gAvlVvda~~GV~~qT~~-----v~~~a~~~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          101 VVNLLDTPGHQD------FSEDTYRVLTAVD---SALVVIDAAKGVEAQTRK-----LMDVCRMRATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEEEECCCCGGG------CSHHHHHHHHSCS---EEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECTTSCC
T ss_pred             EEEEEeCCCcHH------HHHHHHHHHHhcC---ceEEEeecCCCcccccHH-----HHHHHHHhCCceEEEEecccchh
Confidence            467999999665      2245555664344   478899997654444422     13455678999999999999865


Q ss_pred             c
Q 026584          148 N  148 (236)
Q Consensus       148 ~  148 (236)
                      .
T Consensus       167 a  167 (548)
T 3vqt_A          167 L  167 (548)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.42  E-value=0.0094  Score=53.39  Aligned_cols=111  Identities=9%  Similarity=0.058  Sum_probs=60.5

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+++|+||||..+     +.. .    +. .... ++++++|+....+...+-.         .-.++|.+.|+||+|+
T Consensus       147 ~~~~iliDT~Gi~~-----~~~-~----v~-~~~d-~vl~v~d~~~~~~~~~i~~---------~i~~~~~ivvlNK~Dl  205 (337)
T 2qm8_A          147 GFDVILVETVGVGQ-----SET-A----VA-DLTD-FFLVLMLPGAGDELQGIKK---------GIFELADMIAVNKADD  205 (337)
T ss_dssp             TCCEEEEEECSSSS-----CHH-H----HH-TTSS-EEEEEECSCC------CCT---------THHHHCSEEEEECCST
T ss_pred             CCCEEEEECCCCCc-----chh-h----HH-hhCC-EEEEEEcCCCcccHHHHHH---------HHhccccEEEEEchhc
Confidence            45899999999543     111 1    21 2344 4778888742211100000         0025688999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--C-CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--S-MVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~-lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... ....                  +...++..++ .++...  + ...++++|+.++++++.|...|.+..+
T Consensus       206 ~~~~-~~s~------------------~~~~~l~~a~-~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          206 GDGE-RRAS------------------AAASEYRAAL-HILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TCCH-HHHH------------------HHHHHHHHHH-TTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCch-hHHH------------------HHHHHHHHHH-HhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            6533 1100                  0011111111 111111  1 246788999999999999999988765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.34  E-value=0.06  Score=52.85  Aligned_cols=64  Identities=17%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      =||||||.+.      -.......|+-.+   .+|.++|+.-=-.+..--     -+....+.++|.|.|+||+|...
T Consensus        88 NlIDTPGHvD------F~~Ev~~aLr~~D---gavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           88 NVIDTPGHVD------FTIEVERSLRVLD---GAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             EEECCCSCTT------CHHHHHHHHHHCS---EEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSSTT
T ss_pred             EEEeCCCCcc------cHHHHHHHHHHhC---eEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEccccccC
Confidence            3899999655      3345555564344   478889986533333221     14445668999999999999864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.33  E-value=0.005  Score=55.99  Aligned_cols=129  Identities=16%  Similarity=0.238  Sum_probs=63.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-----cc--hhhHHHHHHHHHHHHhh----cCCCE
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-----TD--VTKFISGCMASLSAMVQ----LELPH  136 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-----~d--p~~~is~~l~sls~m~~----l~lP~  136 (236)
                      .+-|+|||||-. |.     +......  .+.. +++|++|..-.     .+  +..+-.+.-+ +....+    -+.|.
T Consensus       202 ~l~i~Dt~Gq~~-~r-----~~w~~~f--~~~~-~iIfv~dls~~dq~l~ed~~~n~~~es~~~-~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          202 PFKMVDVGGQRS-ER-----KRWFECF--DSVT-SILFLVSSSEFDQVLMEDRQTNRLTESLNI-FETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEEEECC-------------CTTSC--TTCC-EEEEEEETTCTTCEETTEEEEEHHHHHHHH-HHHHHTCGGGTTSEE
T ss_pred             EEEEEeccchhh-hh-----hhHHHHh--CCCC-EEEEEEECccccccccccccccHHHHHHHH-HHHHhcchhhCCCCE
Confidence            478999999932 21     0111111  2343 68999998752     12  3344332211 122222    47999


Q ss_pred             EEEecccccccchh---Hhhhhcccc--H-HHHHHHhhhcchhHHHHHHH-HHHHHhhc--cCCeeEEEeeccCcccHHH
Q 026584          137 VNILSKMDLVTNKK---EIEDYLNPE--S-QFLLSELNQHMAPQFAKLNK-SLIELVDE--YSMVSFMPLDLRKESSIRY  207 (236)
Q Consensus       137 InVlsK~DLl~~~~---~l~~~l~~~--~-~~l~~~l~~~~~~~~~~l~~-~l~~li~d--~~lv~f~pls~~d~~~i~~  207 (236)
                      |.|+||+||...+-   .+..++...  . ... +        ...++.. ...++-..  -.-+.++..||+++++|..
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~-~--------e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCL-R--------DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCH-H--------HHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCH-H--------HHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence            99999999974320   122222110  0 000 0        0011110 11111111  1236889999999999999


Q ss_pred             HHHHHHHh
Q 026584          208 VLSQIDNC  215 (236)
Q Consensus       208 L~~~Id~~  215 (236)
                      ++..+-+.
T Consensus       343 vF~~v~~~  350 (362)
T 1zcb_A          343 VFRDVKDT  350 (362)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99877554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.29  E-value=0.014  Score=52.83  Aligned_cols=100  Identities=11%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHH
Q 026584           84 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFL  163 (236)
Q Consensus        84 ~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l  163 (236)
                      ....+++++.+.+. .. ++++++|+.   +|.   +.+.-.+.-.. -+.|.+.|+||+||+.......        . 
T Consensus        56 ~e~f~~~l~~i~~~-~~-~il~VvD~~---d~~---~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~--------~-  117 (368)
T 3h2y_A           56 DDDFLRILNGIGKS-DA-LVVKIVDIF---DFN---GSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHD--------K-  117 (368)
T ss_dssp             CHHHHHHHHHHHHS-CC-EEEEEEETT---SHH---HHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHH--------H-
T ss_pred             HHHHHHHHHHHhcc-Cc-EEEEEEECC---CCc---ccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHH--------H-
Confidence            34456666666432 23 689999985   332   22211122222 2899999999999986431000        0 


Q ss_pred             HHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHh
Q 026584          164 LSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       164 ~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                                    +.+.+.+.....+.  ..++++|+.++.++++|+..|.+.
T Consensus       118 --------------~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          118 --------------VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             --------------HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence                          00011122334454  478999999999999999999764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.24  E-value=0.0063  Score=49.88  Aligned_cols=103  Identities=12%  Similarity=0.151  Sum_probs=60.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      +.+++++||||.+.....          + .. ..-..+.++|+... ..|..+..        +  ++.|.+.|+||+|
T Consensus       118 ~~d~~~id~~g~i~~~~s----------~-~~-~~~~~~~v~~~~~~~~~~~~~~~--------~--~~~~~iiv~NK~D  175 (226)
T 2hf9_A          118 EIDLLFIENVGNLICPAD----------F-DL-GTHKRIVVISTTEGDDTIEKHPG--------I--MKTADLIVINKID  175 (226)
T ss_dssp             GCSEEEEECCSCSSGGGG----------C-CC-SCSEEEEEEEGGGCTTTTTTCHH--------H--HTTCSEEEEECGG
T ss_pred             CCCEEEEeCCCCccCcch----------h-hh-ccCcEEEEEecCcchhhHhhhhh--------H--hhcCCEEEEeccc
Confidence            348999999997543111          1 11 11235667775332 22332221        1  4789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.+.. ..      ..+.                   +.+.+..++ ...++++|+++++++.+++..|.+.+
T Consensus       176 l~~~~-~~------~~~~-------------------~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          176 LADAV-GA------DIKK-------------------MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             GHHHH-TC------CHHH-------------------HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCchh-HH------HHHH-------------------HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            86421 00      0000                   011122223 36899999999999999999987754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.22  E-value=0.012  Score=53.44  Aligned_cols=101  Identities=16%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHH
Q 026584           84 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFL  163 (236)
Q Consensus        84 ~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l  163 (236)
                      ....+++++..... .+ ++++++|+.-..  +.+..    .+...+ -+.|.+.|+||+||+.......          
T Consensus        58 ~e~f~~~L~~~~~~-~~-lil~VvD~~d~~--~s~~~----~l~~~l-~~~piilV~NK~DLl~~~~~~~----------  118 (369)
T 3ec1_A           58 DDDFLSMLHRIGES-KA-LVVNIVDIFDFN--GSFIP----GLPRFA-ADNPILLVGNKADLLPRSVKYP----------  118 (369)
T ss_dssp             -CHHHHHHHHHHHH-CC-EEEEEEETTCSG--GGCCS----SHHHHC-TTSCEEEEEECGGGSCTTCCHH----------
T ss_pred             HHHHHHHHHHhhcc-Cc-EEEEEEECCCCC--Cchhh----HHHHHh-CCCCEEEEEEChhcCCCccCHH----------
Confidence            34456666666321 22 689999986432  11111    111112 2889999999999986431000          


Q ss_pred             HHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhh
Q 026584          164 LSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       164 ~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                                   ++.+.+.+.....+.  ..++++|+.++.+++.|+..|.+..
T Consensus       119 -------------~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          119 -------------KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             -------------HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence                         000111122344555  5889999999999999999998643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.18  E-value=0.051  Score=43.64  Aligned_cols=110  Identities=13%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      ..++||+||-..+.+   ++...  .+..+   +++++.|..   ++..|-..  ++.-+.... .-+.|.|.|.||+|+
T Consensus        58 l~~~Dt~~~~~~~~~---~~~~~--~~~~~---~~i~v~dv~---~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl  126 (192)
T 2cjw_A           58 IILLDMWENKGENEW---LHDHC--MQVGD---AYLIVYSIT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDL  126 (192)
T ss_dssp             EEEECCCCC----CT---TGGGH--HHHCS---EEEEEEETT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred             EEEEEeccCcchhhh---HHHhh--cccCC---EEEEEEECC---CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence            468899998764322   11111  11122   345555532   44444332  111111111 237999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... .+    .  .    +     .+   .    .++   ..++ ..|+++|+++++++++++..+-+.+
T Consensus       127 ~~~r-~v----~--~----~-----~~---~----~~a---~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          127 VRXR-EV----S--V----S-----EG---R----AXA---VVFD-XKFIETSAAVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             GGGC-CS----C--H----H-----HH---H----HHH---HHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hccc-cc----c--H----H-----HH---H----HHH---HHhC-CceEEeccccCCCHHHHHHHHHHHH
Confidence            6432 11    0  0    0     00   0    111   1222 4799999999999999999887654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.01  E-value=0.065  Score=48.29  Aligned_cols=118  Identities=20%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             CEEEEeCCCceeeeeccchH-HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~-~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +.-|.|||||-.+.+  +.. +.  ...  .+.. ++++++|+.-- .+....+..++-.+. ...-++|.+.|.||+||
T Consensus        47 ~LqIWDTAGQErf~~--~~l~~~--~yy--r~a~-~~IlV~Ditd~~~~~~~~l~~~l~~~~-~~~~~ipillvgNK~DL  118 (331)
T 3r7w_B           47 DLAVMELPGQLNYFE--PSYDSE--RLF--KSVG-ALVYVIDSQDEYINAITNLAMIIEYAY-KVNPSINIEVLIHKVDG  118 (331)
T ss_dssp             CEEEEECCSCSSSCC--CSHHHH--HHH--TTCS-EEEEECCCSSCTTHHHHHHHHHHHHHH-HHCTTCEEEEECCCCCS
T ss_pred             EEEEEECCCchhccc--hhhhhh--hhc--cCCC-EEEEEEECCchHHHHHHHHHHHHHHHh-hcCCCCcEEEEEECccc
Confidence            578999999987532  111 11  123  2444 68999998642 111122222221111 11237999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .+.....                    ...+....+.++-+.+.+    -+.|+.-||+| .+|.+.+..|=+
T Consensus       119 ~~~~~R~--------------------~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~  170 (331)
T 3r7w_B          119 LSEDFKV--------------------DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQ  170 (331)
T ss_dssp             SCSHHHH--------------------HHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred             Cchhhhh--------------------hHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHH
Confidence            7643100                    011222233333333431    27899999998 578877766543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.00  E-value=0.0022  Score=58.94  Aligned_cols=35  Identities=11%  Similarity=0.069  Sum_probs=19.8

Q ss_pred             eeEEEeeccCcccHHHHHH-HHHHhhcccccCCCCC
Q 026584          192 VSFMPLDLRKESSIRYVLS-QIDNCIQWGEDADLKI  226 (236)
Q Consensus       192 v~f~pls~~d~~~i~~L~~-~Id~~~~y~ed~~~~~  226 (236)
                      ..++|+|+..+.++.+|+. .+-+.++.++...|.+
T Consensus       244 ~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~  279 (397)
T 1wxq_A          244 YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLR  279 (397)
T ss_dssp             CEEEEECHHHHHHHHSCSSSCCCCSCC---------
T ss_pred             CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccc
Confidence            5789999999998887765 5555555555555443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.88  E-value=0.044  Score=48.12  Aligned_cols=86  Identities=10%  Similarity=0.252  Sum_probs=52.5

Q ss_pred             CCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHH
Q 026584           98 NFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA  176 (236)
Q Consensus        98 ~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~  176 (236)
                      +.. ++++++|+..-. +.. .+..++..+   -..++|.|.|+||+||.+.. +...            .         
T Consensus        79 naD-~vliV~d~~~p~~s~~-~l~~~l~~~---~~~~~~~ilV~NK~DL~~~~-~v~~------------~---------  131 (302)
T 2yv5_A           79 NVD-RVIIVETLKMPEFNNY-LLDNMLVVY---EYFKVEPVIVFNKIDLLNEE-EKKE------------L---------  131 (302)
T ss_dssp             SCC-EEEEEECSTTTTCCHH-HHHHHHHHH---HHTTCEEEEEECCGGGCCHH-HHHH------------H---------
T ss_pred             hcC-EEEEEEECCCCCCCHH-HHHHHHHHH---HhCCCCEEEEEEcccCCCcc-ccHH------------H---------
Confidence            555 478889986422 222 344444322   23689999999999997543 1100            0         


Q ss_pred             HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                         ....+.....+ ..++++|++++++++.|...+..
T Consensus       132 ---~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          132 ---ERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             ---HHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTTT
T ss_pred             ---HHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhccC
Confidence               00011112223 47999999999999999987753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.83  E-value=0.046  Score=43.83  Aligned_cols=111  Identities=12%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +.++|||||-+.-   ...    ....+ +.. ++++++|......... +..++-.+.....-+.|.+.|+||+|+...
T Consensus        56 ~~i~Dt~g~~~~~---~~~----~~~~~-~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~  125 (199)
T 2f9l_A           56 AQIWDTAGQERYR---RIT----SAYYR-GAV-GALLVYDIAKHLTYEN-VERWLKELRDHADSNIVIMLVGNKSDLRHL  125 (199)
T ss_dssp             EEEEECSSGGGTT---CCC----HHHHT-TCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEECCCchhhh---hhh----HHHHh-cCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence            4578999986521   111    11212 233 5778888653221111 111221122112247899999999999642


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      . ..      ..+            .    .+   .+..+.+ +.++..|+.++.++++++..|-+.+
T Consensus       126 ~-~~------~~~------------~----a~---~l~~~~~-~~~~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          126 R-AV------PTD------------E----AR---AFAEKNN-LSFIETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             C-CS------CHH------------H----HH---HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             c-Cc------CHH------------H----HH---HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            2 00      000            0    11   2223344 4678899999999999999887754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=95.80  E-value=0.076  Score=45.00  Aligned_cols=87  Identities=13%  Similarity=0.057  Sum_probs=52.3

Q ss_pred             eEEEEeecCCCc--cchhhHHHHHHHHHHHH-hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026584          101 VCAVYLLDSQFI--TDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK  177 (236)
Q Consensus       101 ~~~V~LiD~~~~--~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~  177 (236)
                      -++++++|+..-  ..-. .+..++..+... ..-+.|.|.|.||+||.... .+.                        
T Consensus       164 d~vilV~D~t~~~~~s~~-~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~------------------------  217 (255)
T 3c5h_A          164 DGFLLGIDVSRGMNRNFD-DQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YIR------------------------  217 (255)
T ss_dssp             CEEEEEEECBC----CHH-HHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HHH------------------------
T ss_pred             CEEEEEEECCCCchhhHH-HHHHHHHHHHHHhccCCCCEEEEEEcccccccH-HHH------------------------
Confidence            368889997542  1111 133333333222 23589999999999995432 110                        


Q ss_pred             HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                         ...++.....-..|+++|+++++++++++..|-+.+
T Consensus       218 ---~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          218 ---DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             ---HHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence               001112222236899999999999999999886653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.44  E-value=0.08  Score=46.40  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             EEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          102 CAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       102 ~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      +++|+++... --+|...  .++    -.+.-+.|.+.|+||+|+.... ++..                       ..+
T Consensus       129 ~ll~ldePt~~~Ld~~~~--~~l----~~l~~~~~iilV~~K~Dl~~~~-e~~~-----------------------~~~  178 (301)
T 2qnr_A          129 CCFYFISPFGHGLKPLDV--AFM----KAIHNKVNIVPVIAKADTLTLK-ERER-----------------------LKK  178 (301)
T ss_dssp             EEEEEECSSSSSCCHHHH--HHH----HHHTTTSCEEEEECCGGGSCHH-HHHH-----------------------HHH
T ss_pred             heeeeecCcccCCCHHHH--HHH----HHHHhcCCEEEEEEeCCCCCHH-HHHH-----------------------HHH
Confidence            3677776533 3566552  111    1222368999999999997543 2211                       111


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.+.+..++ +.|++.|+.++ ++++++..+.+.
T Consensus       179 ~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~  211 (301)
T 2qnr_A          179 RILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRL  211 (301)
T ss_dssp             HHHHHHHHTT-CCCCCCC----------CHHHHHH
T ss_pred             HHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHH
Confidence            2223344555 58888999988 888877665553

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=95.21  E-value=0.055  Score=48.85  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=21.4

Q ss_pred             CeeEEEeeccCcccHHHHHHHHHHh
Q 026584          191 MVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       191 lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      -+-++-.||+|.++|+.++..+-..
T Consensus       301 ~iy~h~TsA~dt~nv~~vF~~v~~~  325 (340)
T 4fid_A          301 KVYTNPTNATDGSNIKRVFMLAVDV  325 (340)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeCcHHHHHHHHHHHHH
Confidence            3788999999999999999887654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=95.14  E-value=0.031  Score=56.08  Aligned_cols=66  Identities=17%  Similarity=0.223  Sum_probs=42.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+-|+|||||.+ |+  .   .....++..  . ++|+++|+..-..+... ..+    ....+.++|.|.|+||+|+..
T Consensus        99 ~i~liDTPG~~d-f~--~---~~~~~l~~a--D-~ailVvDa~~g~~~qt~-~~~----~~~~~~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           99 LINLIDSPGHVD-FS--S---EVTAALRVT--D-GALVVVDTIEGVCVQTE-TVL----RQALGERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEECCCCCCS-SC--H---HHHHHHHTC--S-EEEEEEETTTBSCHHHH-HHH----HHHHHTTCEEEEEEECHHHHH
T ss_pred             eEEEEECcCchh-hH--H---HHHHHHHhC--C-EEEEEEeCCCCCCHHHH-HHH----HHHHHcCCCeEEEEECCCcch
Confidence            357999999987 32  1   233445333  3 58889998764444332 111    222356899999999999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.04  E-value=0.13  Score=44.88  Aligned_cols=86  Identities=15%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026584           98 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK  177 (236)
Q Consensus        98 ~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~  177 (236)
                      +.. ++++++|+..-......+..++..+   -.-+.|.|.|+||+||.+.. +.+            +.          
T Consensus        84 ~ad-~vilV~D~~~~~~s~~~l~~~l~~~---~~~~~piilv~NK~DL~~~~-~v~------------~~----------  136 (301)
T 1u0l_A           84 NVD-QVILVVTVKMPETSTYIIDKFLVLA---EKNELETVMVINKMDLYDED-DLR------------KV----------  136 (301)
T ss_dssp             SCC-EEEEEECSSTTCCCHHHHHHHHHHH---HHTTCEEEEEECCGGGCCHH-HHH------------HH----------
T ss_pred             cCC-EEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEeHHHcCCch-hHH------------HH----------
Confidence            444 5788899764221112344443322   12589999999999997543 110            00          


Q ss_pred             HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                        +++++.....  ..++++|+++++++++++..+..
T Consensus       137 --~~~~~~~~~~--~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          137 --RELEEIYSGL--YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             --HHHHHHHTTT--SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             --HHHHHHHhhh--CcEEEEECCCCcCHHHHHHHhcC
Confidence              0011111111  67999999999999999987753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.73  E-value=0.069  Score=49.42  Aligned_cols=87  Identities=11%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             EEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          102 CAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       102 ~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      +++|+++.. ...++.+.  .++-.+    +-+.|.|.|+||+|++... ++..+..                       
T Consensus       141 vlL~ldePt~~~L~~~d~--~~lk~L----~~~v~iIlVinK~Dll~~~-ev~~~k~-----------------------  190 (418)
T 2qag_C          141 CCLYFIAPSGHGLKPLDI--EFMKRL----HEKVNIIPLIAKADTLTPE-ECQQFKK-----------------------  190 (418)
T ss_dssp             EEEEECCC-CCSCCHHHH--HHHHHH----TTTSEEEEEEESTTSSCHH-HHHHHHH-----------------------
T ss_pred             EEEEEecCcccCCCHHHH--HHHHHH----hccCcEEEEEEcccCccHH-HHHHHHH-----------------------
Confidence            356666654 34455552  111112    2389999999999998654 3322211                       


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      .+.+.+..++ +.++..|+.+.+++..+...+-..++|.
T Consensus       191 ~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iPfa  228 (418)
T 2qag_C          191 QIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLA  228 (418)
T ss_dssp             HHHHHHHHHT-CCCCCCC-----------------CCEE
T ss_pred             HHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence            1112222332 4566677777888887777777776663

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=94.68  E-value=0.044  Score=49.53  Aligned_cols=131  Identities=9%  Similarity=0.109  Sum_probs=66.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc-------hhhHHHHHHHHHHHHhh----cCCCE
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-------VTKFISGCMASLSAMVQ----LELPH  136 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d-------p~~~is~~l~sls~m~~----l~lP~  136 (236)
                      .+-++||+||-..-   ...   ....  .+.. +++|++|..-...       ...+-.+. .-+....+    -+.|.
T Consensus       194 ~l~iwDt~GQe~~r---~~w---~~yf--~~a~-~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          194 HFKMFDVGGQRSER---KKW---IHCF--EGVT-AIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEEEECCSGGGG---GGG---GGGC--TTCS-EEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEE
T ss_pred             eEEEEeCCCchhhh---HHH---HHHH--hcCC-EEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcE
Confidence            46799999996421   111   1112  2444 6899999765211       23333322 11222222    37999


Q ss_pred             EEEecccccccchh---HhhhhccccHHHHHHHhhhcchhHHHHHHH-HHHHHhh--ccCCeeEEEeeccCcccHHHHHH
Q 026584          137 VNILSKMDLVTNKK---EIEDYLNPESQFLLSELNQHMAPQFAKLNK-SLIELVD--EYSMVSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       137 InVlsK~DLl~~~~---~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~-~l~~li~--d~~lv~f~pls~~d~~~i~~L~~  210 (236)
                      |.|+||+||...+.   .+..++.....    ..   ......++.. ...++-.  .-.-+.++..||+++++|..++.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g----~~---~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~  336 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAG----SN---TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD  336 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCS----CS---CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCC----CC---CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence            99999999964320   12222211000    00   0000011111 1111111  01237899999999999999998


Q ss_pred             HHHHh
Q 026584          211 QIDNC  215 (236)
Q Consensus       211 ~Id~~  215 (236)
                      .+-+.
T Consensus       337 ~v~~~  341 (353)
T 1cip_A          337 AVTDV  341 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.60  E-value=0.021  Score=49.33  Aligned_cols=94  Identities=16%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             CCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHh
Q 026584           74 CPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEI  152 (236)
Q Consensus        74 ~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l  152 (236)
                      +||++- .+    .+.+.+.++.  .. ++++++|+..-... ...+.        ++  +.|.+.|+||+||+... ..
T Consensus         4 ~PGhm~-ka----~~~~~~~l~~--~D-~vl~VvDar~P~~~~~~~l~--------ll--~k~~iivlNK~DL~~~~-~~   64 (262)
T 3cnl_A            4 YPGHIE-KA----KRQIKDLLRL--VN-TVVEVRDARAPFATSAYGVD--------FS--RKETIILLNKVDIADEK-TT   64 (262)
T ss_dssp             -----C-CT----THHHHHHHTT--CS-EEEEEEETTSTTTTSCTTSC--------CT--TSEEEEEEECGGGSCHH-HH
T ss_pred             CchHHH-HH----HHHHHHHHhh--CC-EEEEEeeCCCCCcCcChHHH--------hc--CCCcEEEEECccCCCHH-HH
Confidence            477653 22    2455555633  44 58999998632111 11111        11  89999999999998643 22


Q ss_pred             hhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          153 EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       153 ~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.|.+                           ..+..+ ..+ ++|+.++.+++.|+..+.+.
T Consensus        65 ~~~~~---------------------------~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           65 KKWVE---------------------------FFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHH---------------------------HHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHH---------------------------HHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence            22111                           111122 234 88999999999888877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.31  E-value=0.22  Score=39.73  Aligned_cols=109  Identities=10%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      .+.|||||-..-   ....   ... + +.. +++++.|......... +..++-.+.....-+.|.+.|+||+||....
T Consensus        81 ~i~Dt~g~~~~~---~~~~---~~~-~-~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~  150 (191)
T 1oix_A           81 QIWDTAGLERYR---AITS---AYY-R-GAV-GALLVYDIAKHLTYEN-VERWLKELRDHADSNIVIMLVGNKSDLRHLR  150 (191)
T ss_dssp             EEEEECSCCSSS---CCCH---HHH-T-TCC-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEEECCCCcchh---hhhH---HHh-h-cCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            468999985422   1111   122 1 222 4677788653221111 1112211111122478999999999995322


Q ss_pred             hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                       ..      ..                ...++   +..+.+ +.++..|+.|+.++++++..|-+.
T Consensus       151 -~~------~~----------------~~a~~---l~~~~~-~~~ld~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          151 -AV------PT----------------DEARA---FAEKNG-LSFIETSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             -CS------CH----------------HHHHH---HHHHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -cc------CH----------------HHHHH---HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence             00      00                00111   222333 467789999999999999988654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.47  E-value=0.26  Score=45.62  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC-C-EEEEe
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL-P-HVNIL  140 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l-P-~InVl  140 (236)
                      ..+|+||||||...    .  -..++..+.   ..-..-.+++++|+..-.+   .+.     ..-.++-.+ | ...|+
T Consensus       180 ~~D~vIIDT~G~~~----~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-----~~~~~~~~~~~i~gvVl  245 (432)
T 2v3c_C          180 KADVLIIDTAGRHK----E--EKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-----QAKAFKEAVGEIGSIIV  245 (432)
T ss_dssp             SCSEEEEECCCSCS----S--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-----HHHHHHTTSCSCEEEEE
T ss_pred             CCCEEEEcCCCCcc----c--cHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-----HHHHHhhcccCCeEEEE
Confidence            55899999999543    1  122333332   2222345788999864332   111     122334356 7 88899


Q ss_pred             cccccccch
Q 026584          141 SKMDLVTNK  149 (236)
Q Consensus       141 sK~DLl~~~  149 (236)
                      ||+|...+.
T Consensus       246 nK~D~~~~~  254 (432)
T 2v3c_C          246 TKLDGSAKG  254 (432)
T ss_dssp             ECSSSCSTT
T ss_pred             eCCCCccch
Confidence            999987543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=92.48  E-value=0.16  Score=48.24  Aligned_cols=73  Identities=11%  Similarity=0.146  Sum_probs=39.3

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D  144 (236)
                      ..+|+||||||....  ....+..+........- -.+++++|+..-.+....+        ..++-.+| .+.|+||+|
T Consensus       183 ~~DvvIIDTpG~~~~--~~~l~~el~~~~~~i~p-d~vllVvDa~~g~~~~~~a--------~~~~~~~~i~gvVlNK~D  251 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQ--EDSLFEEMLQVANAIQP-DNIVYVMDASIGQACEAQA--------KAFKDKVDVASVIVTKLD  251 (504)
T ss_dssp             TCCEEEEEECCCCTT--CHHHHHHHHHHHHHHCC-SEEEEEEETTCCTTHHHHH--------HHHHHHHCCCCEEEECTT
T ss_pred             CCcEEEEeCCCCccc--chhHHHHHHHHHhhhcC-ceEEEEEeccccccHHHHH--------HHHHhhcCceEEEEeCCc
Confidence            458999999995421  11112222111111122 3579999997644322211        11221268 489999999


Q ss_pred             cccch
Q 026584          145 LVTNK  149 (236)
Q Consensus       145 Ll~~~  149 (236)
                      ...+.
T Consensus       252 ~~~~~  256 (504)
T 2j37_W          252 GHAKG  256 (504)
T ss_dssp             SCCCC
T ss_pred             cccch
Confidence            87543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=92.25  E-value=0.44  Score=42.97  Aligned_cols=24  Identities=4%  Similarity=0.113  Sum_probs=20.3

Q ss_pred             eeEEEeeccCcccHHHHHHHHHHh
Q 026584          192 VSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       192 v~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ..++..||+++++|..++..+-+.
T Consensus       319 ~~~~eTSA~d~~nV~~vF~~v~~~  342 (354)
T 2xtz_A          319 FKIYRTTALDQKLVKKTFKLVDET  342 (354)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeecchhHHHHHHHHHHH
Confidence            567899999999999999877553

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=92.04  E-value=0.26  Score=45.35  Aligned_cols=25  Identities=12%  Similarity=-0.043  Sum_probs=21.1

Q ss_pred             CeeEEEeeccCcccHHHHHHHHHHh
Q 026584          191 MVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       191 lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.++..||+|+++|..++..+-+.
T Consensus       358 ~~~~~~TSA~d~~nV~~vF~~v~~~  382 (402)
T 1azs_C          358 YCYPHFTCAVDTENIRRVFNDCRDI  382 (402)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEeecCcCHHHHHHHHHHH
Confidence            3678899999999999999887654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=91.94  E-value=0.34  Score=43.31  Aligned_cols=128  Identities=14%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             CEEEEeCCCceeeeeccchHHHH-HHHHhhCCCceEEEEeecCC-------CccchhhHHHHHHHHHHHHhh----cCCC
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDSQ-------FITDVTKFISGCMASLSAMVQ----LELP  135 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~i-v~~L~~~~~~~~~V~LiD~~-------~~~dp~~~is~~l~sls~m~~----l~lP  135 (236)
                      .+-|+||.||-. |      +++ ....  .+.. +++|++|..       -.++...+-.+.- -+....+    -+.|
T Consensus       168 ~l~iwDtgGQe~-~------R~~w~~yf--~~~~-~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          168 IFRMVDVGGQRS-E------RRKWIHCF--ENVT-SIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEEECCSHH-H------HTTGGGGC--SSCS-EEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCE
T ss_pred             eeEEEEcCCchh-H------HHHHHHHh--CCCC-EEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCce
Confidence            356899999832 1      111 0111  2443 688899654       2334444433221 1122222    3799


Q ss_pred             EEEEecccccccch---hHhhhhcccc---HHHHHHHhhhcchhHHHHHHH-HHHHHh-hccCCeeEEEeeccCcccHHH
Q 026584          136 HVNILSKMDLVTNK---KEIEDYLNPE---SQFLLSELNQHMAPQFAKLNK-SLIELV-DEYSMVSFMPLDLRKESSIRY  207 (236)
Q Consensus       136 ~InVlsK~DLl~~~---~~l~~~l~~~---~~~l~~~l~~~~~~~~~~l~~-~l~~li-~d~~lv~f~pls~~d~~~i~~  207 (236)
                      .|.|+||+||...+   ..+..|....   .... +        ...++.. ...++- ..-.-+.++-.||+|.++|+.
T Consensus       237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~-e--------~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~  307 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA-Q--------AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF  307 (327)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCH-H--------HHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred             EEEEEECchhhhhhhccchHhhhchhccCCCCCH-H--------HHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence            99999999997532   1233333210   0000 0        0011110 011111 111236788899999999999


Q ss_pred             HHHHHHHh
Q 026584          208 VLSQIDNC  215 (236)
Q Consensus       208 L~~~Id~~  215 (236)
                      ++..+-+.
T Consensus       308 vF~~v~~~  315 (327)
T 3ohm_A          308 VFAAVKDT  315 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=91.75  E-value=0.35  Score=42.42  Aligned_cols=73  Identities=12%  Similarity=0.088  Sum_probs=37.2

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~  143 (236)
                      ..+|+||||||.... ...+.+..-+..+.. ... -.+++++|+..-   .+.+..     .-.++-.+| ...|+||+
T Consensus       180 ~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~~~~-d~vllVvda~~g---~~~~~~-----~~~~~~~~~i~gvVlnk~  249 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAIKP-DEVTLVIDASIG---QKAYDL-----ASKFNQASKIGTIIITKM  249 (297)
T ss_dssp             TCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHHCC-SEEEEEEEGGGG---GGHHHH-----HHHHHHTCTTEEEEEECG
T ss_pred             CCCEEEEeCCCCccc-ccHHHHHHHHHHHHHHhcC-CEEEEEeeCCch---HHHHHH-----HHHHHhhCCCCEEEEeCC
Confidence            458999999996541 011111111111111 112 246778898632   222221     112233577 66789999


Q ss_pred             ccccc
Q 026584          144 DLVTN  148 (236)
Q Consensus       144 DLl~~  148 (236)
                      |...+
T Consensus       250 D~~~~  254 (297)
T 1j8m_F          250 DGTAK  254 (297)
T ss_dssp             GGCTT
T ss_pred             CCCcc
Confidence            97543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=91.07  E-value=0.28  Score=44.80  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhccc--------------CCCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceE
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDNY--------------LDDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVC  102 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~~--------------~~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~  102 (236)
                      ||.|..+-++.|...- .    .+.++              .+..+.++||||-++-- .-...+++++..++..  . +
T Consensus        81 PNvGKSTL~n~Lt~~~-~----~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a--d-~  152 (376)
T 4a9a_A           81 PSVGKSTLLSKLTGTE-S----EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC--N-L  152 (376)
T ss_dssp             CCHHHHHHHHHHHSBC-C----CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC--S-E
T ss_pred             CCCCHHHHHHHHhCCC-C----cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc--C-c
Confidence            9999999999887421 1    22222              23468999999976642 1223466777777544  3 5


Q ss_pred             EEEeecCCCccchhhHHHHHHHHHHH-Hhh-cCCCEEEEeccccc
Q 026584          103 AVYLLDSQFITDVTKFISGCMASLSA-MVQ-LELPHVNILSKMDL  145 (236)
Q Consensus       103 ~V~LiD~~~~~dp~~~is~~l~sls~-m~~-l~lP~InVlsK~DL  145 (236)
                      +++++|+.   +|..-.-....-|.. -.+ .+.|.+.|+||+|.
T Consensus       153 il~vvD~~---~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          153 LFIILDVN---KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             EEEEEETT---SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             cccccccC---ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            89999975   454333222111111 112 26799999999996

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=91.03  E-value=0.5  Score=43.71  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+|+||||||.....   .....-+..+...-....+++++|+....+   .+... -.+  --++++..| |+||+|-
T Consensus       183 ~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~-~~f--~~~l~i~gv-VlnK~D~  252 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTA-KAF--NEALPLTGV-VLTKVDG  252 (433)
T ss_dssp             TCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHH-HHH--HHHSCCCCE-EEECTTS
T ss_pred             CCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHH-HHH--hccCCCeEE-EEecCCC
Confidence            4589999999954321   112111222221113345778899874432   22211 111  112444444 8999997


Q ss_pred             ccc
Q 026584          146 VTN  148 (236)
Q Consensus       146 l~~  148 (236)
                      -.+
T Consensus       253 ~~~  255 (433)
T 2xxa_A          253 DAR  255 (433)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=89.74  E-value=0.35  Score=42.82  Aligned_cols=74  Identities=16%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             CCEEEEeCC----Cceeeeec-cchHHHHHHHHhhCCCceEEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCP----GQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~P----GQiElf~~-~~~~~~iv~~L~~~~~~~~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      .++|.|+..    |.|+=-.- ++.+.+   .. -.+.. +++.++|+. ...++. ++.-+|..   .-..+.|.+.|+
T Consensus        54 GD~V~~~~~~~~~~~i~~i~~R~~~l~R---~~-~anvD-~v~~V~~~~~p~~~~~-~i~r~L~~---~~~~~~~~vivl  124 (307)
T 1t9h_A           54 GDYVVYQAENDKEGYLMEIKERTNELIR---PP-ICNVD-QAVLVFSAVQPSFSTA-LLDRFLVL---VEANDIQPIICI  124 (307)
T ss_dssp             TCEEEEECCTTSCEEEEEECCCSCEETT---TT-EECCC-EEEEEEESTTTTCCHH-HHHHHHHH---HHTTTCEEEEEE
T ss_pred             CeEEEEEEcCCCceEEEEEcchhhhhhH---HH-HHhCC-EEEEEEeCCCCCCCHH-HHHHHHHH---HHHCCCCEEEEE
Confidence            478888643    34542222 222222   11 23555 478889987 455555 66655432   224689999999


Q ss_pred             cccccccch
Q 026584          141 SKMDLVTNK  149 (236)
Q Consensus       141 sK~DLl~~~  149 (236)
                      ||+||....
T Consensus       125 nK~DL~~~~  133 (307)
T 1t9h_A          125 TKMDLIEDQ  133 (307)
T ss_dssp             ECGGGCCCH
T ss_pred             ECCccCchh
Confidence            999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=89.35  E-value=1.7  Score=39.28  Aligned_cols=56  Identities=9%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584          131 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS  210 (236)
Q Consensus       131 ~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~  210 (236)
                      ..+.|.|.|+||+||.+.. ....                        .++........+ +..+++|+.++.++.+|..
T Consensus       158 ~~~~~~iivlNK~DL~~~~-~~~~------------------------~~~~~~~y~~~G-~~v~~~Sa~~~~gl~~L~~  211 (358)
T 2rcn_A          158 TLQVEPLIVLNKIDLLDDE-GMDF------------------------VNEQMDIYRNIG-YRVLMVSSHTQDGLKPLEE  211 (358)
T ss_dssp             HHTCEEEEEEECGGGCCHH-HHHH------------------------HHHHHHHHHTTT-CCEEECBTTTTBTHHHHHH
T ss_pred             hcCCCEEEEEECccCCCch-hHHH------------------------HHHHHHHHHhCC-CcEEEEecCCCcCHHHHHH
Confidence            4689999999999998643 1000                        001111122223 3678899999999988876


Q ss_pred             HH
Q 026584          211 QI  212 (236)
Q Consensus       211 ~I  212 (236)
                      .+
T Consensus       212 ~~  213 (358)
T 2rcn_A          212 AL  213 (358)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=88.78  E-value=12  Score=33.00  Aligned_cols=74  Identities=9%  Similarity=0.094  Sum_probs=45.5

Q ss_pred             HHHHhhcCCCEEEE-ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCc
Q 026584          126 LSAMVQLELPHVNI-LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKE  202 (236)
Q Consensus       126 ls~m~~l~lP~InV-lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~  202 (236)
                      ....-+.++|..-| +|++......         +  ..       ...++....+.+.++-+.|+.  +.-+|+...+.
T Consensus       258 ~~~l~~~~i~v~gvV~N~~~~~~~~---------~--~~-------~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~  319 (349)
T 3ug7_A          258 MKALQKYGIPIDAVIVNQLIPEDVQ---------C--DF-------CRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEA  319 (349)
T ss_dssp             HHHHHHTTCCEEEEEEEEECCSCCC---------S--HH-------HHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCS
T ss_pred             HHHHHHCCCCeeEEEEcCCccccCC---------C--ch-------HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            44555689998765 7888653210         0  00       111222333445555566654  78899999999


Q ss_pred             ccHHHHHHHHHHhhc
Q 026584          203 SSIRYVLSQIDNCIQ  217 (236)
Q Consensus       203 ~~i~~L~~~Id~~~~  217 (236)
                      .+++.|-...+...+
T Consensus       320 ~g~~~L~~~~~~l~~  334 (349)
T 3ug7_A          320 KGIETLKQIAKILYG  334 (349)
T ss_dssp             CSHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHcC
Confidence            999998877776654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=87.63  E-value=2.7  Score=39.05  Aligned_cols=70  Identities=10%  Similarity=0.124  Sum_probs=37.4

Q ss_pred             CCCEEEEeCCCceeeeeccch--HHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcC-CCEEEEec
Q 026584           66 DDDYLVFDCPGQIELFTHVPV--LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILS  141 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~-lP~InVls  141 (236)
                      ..+++||||||-    .|.+.  +.. +..+.+ ..- -.+++++|+..-.+...        .+..++=. -+...|+|
T Consensus       182 ~~DvVIIDTaGr----l~~d~~lm~e-l~~i~~~~~p-d~vlLVvDA~~gq~a~~--------~a~~f~~~~~i~gVIlT  247 (443)
T 3dm5_A          182 GVDIIIVDTAGR----HKEDKALIEE-MKQISNVIHP-HEVILVIDGTIGQQAYN--------QALAFKEATPIGSIIVT  247 (443)
T ss_dssp             TCSEEEEECCCC----SSCCHHHHHH-HHHHHHHHCC-SEEEEEEEGGGGGGHHH--------HHHHHHHSCTTEEEEEE
T ss_pred             CCCEEEEECCCc----ccchHHHHHH-HHHHHHhhcC-ceEEEEEeCCCchhHHH--------HHHHHHhhCCCeEEEEE
Confidence            458999999993    23222  222 122211 122 24789999876332211        11222212 34557899


Q ss_pred             ccccccch
Q 026584          142 KMDLVTNK  149 (236)
Q Consensus       142 K~DLl~~~  149 (236)
                      |+|...+.
T Consensus       248 KlD~~~~g  255 (443)
T 3dm5_A          248 KLDGSAKG  255 (443)
T ss_dssp             CCSSCSSH
T ss_pred             CCCCcccc
Confidence            99987654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=85.95  E-value=1.6  Score=40.27  Aligned_cols=73  Identities=14%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+|+||||||....-  ...+..+........ .--+++++|+...   .+.+..+   -...-++++ .-.|+||+|-
T Consensus       180 ~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~-pd~vlLVvDa~tg---q~av~~a---~~f~~~l~i-~GVIlTKlD~  249 (425)
T 2ffh_A          180 ARDLILVDTAGRLQID--EPLMGELARLKEVLG-PDEVLLVLDAMTG---QEALSVA---RAFDEKVGV-TGLVLTKLDG  249 (425)
T ss_dssp             TCSEEEEECCCCSSCC--HHHHHHHHHHHHHHC-CSEEEEEEEGGGT---THHHHHH---HHHHHHTCC-CEEEEESGGG
T ss_pred             CCCEEEEcCCCccccc--HHHHHHHHHhhhccC-CceEEEEEeccch---HHHHHHH---HHHHhcCCc-eEEEEeCcCC
Confidence            4589999999965431  112222211111111 2246788998643   3333211   111112333 3348899997


Q ss_pred             ccc
Q 026584          146 VTN  148 (236)
Q Consensus       146 l~~  148 (236)
                      -.+
T Consensus       250 ~~~  252 (425)
T 2ffh_A          250 DAR  252 (425)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=85.83  E-value=1.8  Score=40.14  Aligned_cols=76  Identities=14%  Similarity=0.141  Sum_probs=38.5

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ..+++|+||||-.-.......+..+...+.... .-.+++++|+..-.+.....       ...-.---+...|+||+|.
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~-pd~vlLVlDa~~gq~a~~~a-------~~f~~~~~~~gVIlTKlD~  250 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK-PDDVILVIDASIGQKAYDLA-------SRFHQASPIGSVIITKMDG  250 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-CSEEEEEEEGGGGGGGHHHH-------HHHHHHCSSEEEEEECGGG
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-CcceEEEEeCccchHHHHHH-------HHHhcccCCcEEEEecccc
Confidence            468999999993220011112222222111112 23578889997643332211       1111122457788999998


Q ss_pred             ccch
Q 026584          146 VTNK  149 (236)
Q Consensus       146 l~~~  149 (236)
                      ..+.
T Consensus       251 ~a~~  254 (433)
T 3kl4_A          251 TAKG  254 (433)
T ss_dssp             CSCH
T ss_pred             cccc
Confidence            6543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=84.52  E-value=1.1  Score=38.52  Aligned_cols=43  Identities=12%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             eEEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584          101 VCAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  149 (236)
Q Consensus       101 ~~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~  149 (236)
                      .++++++|.. .-.+|.+.-  .   +..+.+ ..+.|.|++|+|.++..
T Consensus       113 l~~lllldep~~gL~~lD~~--~---l~~L~~-~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A          113 HCCLYFISPTGHSLRPLDLE--F---MKHLSK-VVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             CEEEEEECCCSSSCCHHHHH--H---HHHHHT-TSEEEEEETTGGGSCHH
T ss_pred             eeeeEEEecCCCcCCHHHHH--H---HHHHHh-cCcEEEEEeccccCCHH
Confidence            6778888854 555666621  1   222223 38999999999999765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=81.21  E-value=9.2  Score=35.03  Aligned_cols=162  Identities=9%  Similarity=0.042  Sum_probs=80.8

Q ss_pred             CCChHH-HHHHHHHHHHhhH----HH-H-HHHh---c---ccC-CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCce
Q 026584           36 LGPNGG-LIYCMEHLEDNLD----DW-L-AEEL---D---NYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV  101 (236)
Q Consensus        36 LGPNGa-lv~~me~l~~n~~----~w-l-~~~i---~---~~~-~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~  101 (236)
                      +||||+ .-+-++.+.....    +. + ...+   .   ... ..+..+.|+||-   .........+++.+.-.+...
T Consensus        75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~---~~~~~~~~~~L~~~~L~~~~~  151 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI---GSTNFPPDTYLEKMKFYEYDF  151 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCG---GGSSCCHHHHHHHTTGGGCSE
T ss_pred             ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcc---cchHHHHHHHHHHcCCCccCC
Confidence            799996 6777777765220    00 0 0000   0   000 125688899983   222334555655553112232


Q ss_pred             EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                       .+. +++.......-.+      ..++.+.+.|++.|+||.|++--. +-..-++  +.         ......++.++
T Consensus       152 -~~~-lS~G~~~kqrv~l------a~aL~~~~~p~~lV~tkpdlllLD-EPtsgLD--~~---------~~~~l~~~l~~  211 (413)
T 1tq4_A          152 -FII-ISATRFKKNDIDI------AKAISMMKKEFYFVRTKVDSDITN-EADGEPQ--TF---------DKEKVLQDIRL  211 (413)
T ss_dssp             -EEE-EESSCCCHHHHHH------HHHHHHTTCEEEEEECCHHHHHHH-HHTTCCT--TC---------CHHHHHHHHHH
T ss_pred             -eEE-eCCCCccHHHHHH------HHHHHhcCCCeEEEEecCcccccC-cccccCC--HH---------HHHHHHHHHHH
Confidence             223 6654322222222      233455789999999999986211 0000011  00         00111112222


Q ss_pred             HH-HHhhcc--CCeeEEEeecc--CcccHHHHHHHHHHhhcccc
Q 026584          182 LI-ELVDEY--SMVSFMPLDLR--KESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       182 l~-~li~d~--~lv~f~pls~~--d~~~i~~L~~~Id~~~~y~e  220 (236)
                      ++ +.+.+.  ..-..+|+|+.  ++.++++|...|-+.++.++
T Consensus       212 l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          212 NCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            21 111222  23578999994  45569999999998887664

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=80.33  E-value=3.2  Score=35.98  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=36.0

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D  144 (236)
                      +.+|+||||||...+  ....+..+........ .-.+++++|+...   .+.+...    . .++-.++ .=.|+||+|
T Consensus       180 ~~D~viiDtpp~~~~--d~~~~~~l~~~~~~~~-~~~~~lv~~~~~~---~~~~~~~----~-~~~~~~~i~givlnk~d  248 (295)
T 1ls1_A          180 ARDLILVDTAGRLQI--DEPLMGELARLKEVLG-PDEVLLVLDAMTG---QEALSVA----R-AFDEKVGVTGLVLTKLD  248 (295)
T ss_dssp             TCCEEEEECCCCSSC--CHHHHHHHHHHHHHHC-CSEEEEEEEGGGT---HHHHHHH----H-HHHHHTCCCEEEEECGG
T ss_pred             CCCEEEEeCCCCccc--cHHHHHHHHHHhhhcC-CCEEEEEEeCCCc---HHHHHHH----H-HHhhcCCCCEEEEECCC
Confidence            458999999995543  1122333333322111 2235678887632   3333221    1 1121233 224789999


Q ss_pred             cccc
Q 026584          145 LVTN  148 (236)
Q Consensus       145 Ll~~  148 (236)
                      --..
T Consensus       249 ~~~~  252 (295)
T 1ls1_A          249 GDAR  252 (295)
T ss_dssp             GCSS
T ss_pred             CCcc
Confidence            7543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-30

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 42/213 (19%), Positives = 92/213 (43%), Gaps = 6/213 (2%)

Query: 2   HIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEEL 61
             VNLD   +   Y  ++D+RE +++E++M E G GPNG ++   + L +  +++L + L
Sbjct: 31  AYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKFNEYLNKIL 89

Query: 62  DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 121
               ++DY++ D PGQ+E F         +++L         VY+ D + +     +   
Sbjct: 90  RLEKENDYVLIDTPGQMETFLFHEFGVRLMENL----PYPLVVYISDPEILKKPNDYCFV 145

Query: 122 CMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181
              +L   ++L    +  L+K+DL++ +++       E    L+   +        +   
Sbjct: 146 RFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYK 205

Query: 182 LIELVDE-YSMVSFMPLDLRKESSIRYVLSQID 213
           +  ++ E    V  + L  +       + +   
Sbjct: 206 MCSMMTEVLPPVRVLYLSAKTREGFEDLETLAY 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.71
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.68
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.66
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.6
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.52
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.49
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.48
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.47
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.45
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.43
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.29
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.09
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.08
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.01
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.0
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.96
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.77
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.62
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.58
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.56
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.52
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.49
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.46
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.45
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.44
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.41
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.31
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.24
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.22
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.2
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.18
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.13
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.1
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.06
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.01
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.95
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.88
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.86
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.8
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.76
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.58
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.5
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.47
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.23
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.17
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.15
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.11
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.75
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.72
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.66
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.65
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.18
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.87
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.74
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.59
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.78
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.61
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	87.25
d1okkd2	207	GTPase domain of the signal recognition particle r	86.06
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.41
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.8
d1j8yf2	211	GTPase domain of the signal sequence recognition p	81.72
d2qy9a2	211	GTPase domain of the signal recognition particle r	80.18

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.96  E-value=1.8e-28  Score=205.76  Aligned_cols=209  Identities=20%  Similarity=0.364  Sum_probs=172.3

Q ss_pred             CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcc-cCCCCEEEEeCCCcee
Q 026584            1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDN-YLDDDYLVFDCPGQIE   79 (236)
Q Consensus         1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~-~~~~~Yil~D~PGQiE   79 (236)
                      +++||+|||++..+|.+.+|+|++++..++|++ .+|||++..+|+.++.+++ +++.+.+.. ..+.+|+++|||||.|
T Consensus        30 ~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~id~~g~~~  107 (244)
T d1yrba1          30 VAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKF-NEYLNKILRLEKENDYVLIDTPGQME  107 (244)
T ss_dssp             EEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHCSEEEEECCSSHH
T ss_pred             EEEEecCcccccCCCcccchHHHHHHHHHHhHh-hhccCCchhhhhHhHHhhH-HHHHHHHHhhccccceeeeccccchh
Confidence            478999999999999999999999999999976 5999999999999999999 655444432 2256899999999999


Q ss_pred             eeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhcc--
Q 026584           80 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN--  157 (236)
Q Consensus        80 lf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~--  157 (236)
                      .++++..+.++++.+   .. .++++++|+....+|..+.+..+.+.+.+.++++|+++|+||+|+++.. +.+.+..  
T Consensus       108 ~~~~~~~~~~~~~~~---~~-~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~-~~~~~~~~~  182 (244)
T d1yrba1         108 TFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE-EKERHRKYF  182 (244)
T ss_dssp             HHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc---cC-ceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHH-HHHHHHHHH
Confidence            999999988876654   23 3689999999999999999999999999999999999999999999865 3332221  


Q ss_pred             ccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          158 PESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       158 ~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .....+...+.. .....+.+...+...++++. .+.++|+|+.+++|+++|+..|++++.
T Consensus       183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         183 EDIDYLTARLKL-DPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HCHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            133444444433 33467888899999888865 599999999999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=3.5e-08  Score=78.01  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=72.1

Q ss_pred             CCEEEEeCCCceeeeecc-chHHH-HHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHV-PVLRN-FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~-~~~~~-iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..+.++||||+.+--... ..+++ ..+.+  .+.. ++++++|+..-..+.+   ..+....-...-+.|.|.|+||+|
T Consensus        53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~--~~ad-~il~v~D~~~~~~~~~---~~i~~~l~~~~~~~piilv~NK~D  126 (178)
T d1wf3a1          53 RQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVN-AVVWVVDLRHPPTPED---ELVARALKPLVGKVPILLVGNKLD  126 (178)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCS-EEEEEEETTSCCCHHH---HHHHHHHGGGTTTSCEEEEEECGG
T ss_pred             eeeeecccccccccccccchhccccccccc--cccc-ceeeeechhhhhcccc---cchhhheeccccchhhhhhhcccc
Confidence            358999999976532211 11111 12222  2444 5889999865333322   111111122334789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      +.+...+..           +                  .+-+.++...++|+|++++++++.|+..|-+.+..++
T Consensus       127 l~~~~~~~~-----------~------------------~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lpe~p  173 (178)
T d1wf3a1         127 AAKYPEEAM-----------K------------------AYHELLPEAEPRMLSALDERQVAELKADLLALMPEGP  173 (178)
T ss_dssp             GCSSHHHHH-----------H------------------HHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred             cccCHHHHH-----------H------------------HHHhhcccCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            976541110           0                  1112345578899999999999999999998886543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.71  E-value=7.7e-08  Score=77.61  Aligned_cols=112  Identities=13%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELP-HVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL  145 (236)
                      .|-++||||+      .+..+...+.+..  .. ++++++|+.--. .+.. .    -.+.....++.| .|.|+||+|+
T Consensus        79 ~~~~iDtPGh------~~f~~~~~~~~~~--~d-~~ilvvda~~g~~~~~t-~----e~~~~~~~~~~~~iiv~inK~D~  144 (195)
T d1kk1a3          79 RVSFIDAPGH------EALMTTMLAGASL--MD-GAILVIAANEPCPRPQT-R----EHLMALQIIGQKNIIIAQNKIEL  144 (195)
T ss_dssp             EEEEEECSSH------HHHHHHHHHCGGG--CS-EEEEEEETTSCSSCHHH-H----HHHHHHHHHTCCCEEEEEECGGG
T ss_pred             eEeeeccchh------hhhhHHhhccccc--cc-ccccccchhhhhhhhhh-H----HHHHHHHHhcCccceeeeecccc
Confidence            3789999994      4444455444432  33 578899986532 2211 1    112334446777 5667999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... ....                   .    ...+.+.+..+..  +.|+|+|+.++++++.|+..|++.++
T Consensus       145 ~d~~-~~~~-------------------~----~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         145 VDKE-KALE-------------------N----YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             SCHH-HHHH-------------------H----HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhhH-HHHH-------------------H----HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            8644 1110                   0    1222344455544  78999999999999999999998653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=7e-08  Score=76.23  Aligned_cols=119  Identities=16%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             CCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHH--HHHHHHhhcCCCEEEEeccc
Q 026584           67 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM--ASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l--~sls~m~~l~lP~InVlsK~  143 (236)
                      .++.++||||+++-.. +....++..+.+.  ... ++++++|+....  ...+....  +........+.|.|.|+||+
T Consensus        49 ~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~--~~~-~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~  123 (180)
T d1udxa2          49 ERFTLADIPGIIEGASEGKGLGLEFLRHIA--RTR-VLLYVLDAADEP--LKTLETLRKEVGAYDPALLRRPSLVALNKV  123 (180)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHT--SSS-EEEEEEETTSCH--HHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred             CeEEEcCCCeeecCchHHHHHHHHHHHHHH--hhh-hhhhhccccccc--ccchhhhhhhhhccccccchhhhhhhhhhh
Confidence            3578999999876432 2233445555552  233 578889975432  22221111  11122233578999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      |++.++ ..+.        +.+                   .+.. ....++++|+++++++++|...|.+.++-.
T Consensus       124 D~~~~~-~~~~--------~~~-------------------~~~~-~~~~~~~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         124 DLLEEE-AVKA--------LAD-------------------ALAR-EGLAVLPVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             TTSCHH-HHHH--------HHH-------------------HHHT-TTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             hhhhHH-HHHH--------HHH-------------------HHHh-cCCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            998654 2211        101                   1111 236789999999999999999999988643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.66  E-value=2.3e-08  Score=83.04  Aligned_cols=130  Identities=14%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      ...+.++||||+..+.....      ..+.  ... ++++++||..--.+..     .-.+......++|+|.|+||+|+
T Consensus        69 ~~~~~~iDtPGh~~f~~~~~------~~~~--~~D-~~ilVvda~~g~~~~~-----~~~~~~~~~~~~p~iivlNK~D~  134 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTLRK------RGGA--LAD-LAILIVDINEGFKPQT-----QEALNILRMYRTPFVVAANKIDR  134 (227)
T ss_dssp             CCEEEEECCCTTSCCTTSBC------SSSB--SCS-EEEEEEETTTCCCHHH-----HHHHHHHHHTTCCEEEEEECGGG
T ss_pred             ccccccccccceecccccch------hccc--ccc-eEEEEEecccCcccch-----hHHHHHhhcCCCeEEEEEECccC
Confidence            34689999999755332221      1232  233 6899999965323222     12244556689999999999999


Q ss_pred             ccchhH-----hhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh------------ccC-CeeEEEeeccCcccHHH
Q 026584          146 VTNKKE-----IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD------------EYS-MVSFMPLDLRKESSIRY  207 (236)
Q Consensus       146 l~~~~~-----l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~------------d~~-lv~f~pls~~d~~~i~~  207 (236)
                      ......     ....+..........       ...++...+..+.+            +|. .+.++|+|+.+++++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~  207 (227)
T d1g7sa4         135 IHGWRVHEGRPFMETFSKQDIQVQQK-------LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE  207 (227)
T ss_dssp             STTCCCCTTCCHHHHHTTSCHHHHHH-------HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH
T ss_pred             CCchhhhhhHHHHHhhhcchHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHH
Confidence            864311     111111110000000       11122222222222            232 37899999999999999


Q ss_pred             HHHHHHHhh
Q 026584          208 VLSQIDNCI  216 (236)
Q Consensus       208 L~~~Id~~~  216 (236)
                      |+..|....
T Consensus       208 Ll~~l~~l~  216 (227)
T d1g7sa4         208 LLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.60  E-value=2.4e-07  Score=75.31  Aligned_cols=112  Identities=13%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLEL-PHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL  145 (236)
                      .|-++||||+.      +..+..+..+.  ... +++.++|+.. +..+..-- .    +.....+++ |.|.++||+|+
T Consensus        87 ~~~iiD~PGH~------df~~~~~~~~~--~ad-~ailvVda~~gi~~~~t~e-~----~~~~~~~~i~~iIV~vNK~Dl  152 (205)
T d2qn6a3          87 RISFIDAPGHE------VLMATMLSGAA--LMD-GAILVVAANEPFPQPQTRE-H----FVALGIIGVKNLIIVQNKVDV  152 (205)
T ss_dssp             EEEEEECSCHH------HHHHHHHHTSS--CCS-EEEEEEETTSCSSCHHHHH-H----HHHHHHTTCCCEEEEEECGGG
T ss_pred             EEEEeccchHH------HHHhhhhccee--ccc-cccccccccccccchhHHH-H----HHHHHHcCCceeeeccccCCC
Confidence            47899999944      44455555553  233 5888999965 33333211 1    122233676 56667999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .... +...                   .    ...+.+.+..+..  +.|+|+|+.++++|++|+..|+..++
T Consensus       153 ~~~~-~~~~-------------------~----~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         153 VSKE-EALS-------------------Q----YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             SCHH-HHHH-------------------H----HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccch-HHHH-------------------H----HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            8654 1110                   0    0111122333333  78999999999999999999998654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=4.3e-07  Score=71.52  Aligned_cols=121  Identities=15%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             CCEEEEeCCCceeee------eccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584           67 DDYLVFDCPGQIELF------THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  140 (236)
Q Consensus        67 ~~Yil~D~PGQiElf------~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl  140 (236)
                      ..+.++|+||+.+..      .+........+.++..  . ++++++|+.....+...--     +....+.+.|+|.|+
T Consensus        56 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--d-vii~v~d~~~~~~~~~~~~-----~~~~~~~~~~~i~v~  127 (186)
T d1mkya2          56 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA--D-VVVIVLDATQGITRQDQRM-----AGLMERRGRASVVVF  127 (186)
T ss_dssp             EEEEESSCSCC-----------CCSCCHHHHHHHHHC--S-EEEEEEETTTCCCHHHHHH-----HHHHHHTTCEEEEEE
T ss_pred             ceeeeeccCCccccccccccccccchhHHHHHHHhcC--C-EEEEeecccccchhhHHHH-----HHHHHHcCCceeeec
Confidence            357899999986532      2334445666666543  3 5889999976544433221     333456799999999


Q ss_pred             cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      ||+|+......                      +..++.+.+.+-+...+...++|+|++++.++++|+..|++++.
T Consensus       128 nK~D~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         128 NKWDLVVHREK----------------------RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             ECGGGSTTGGG----------------------CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cchhhhcchhh----------------------hhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999765411                      11112222223333445578999999999999999999998753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=5.5e-07  Score=73.74  Aligned_cols=70  Identities=19%  Similarity=0.348  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eecccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD  144 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~D  144 (236)
                      +.+|-|+||||      |.+.++..++.++..+   ++|+++||.---.+...     -.+.....+++|++. ++||+|
T Consensus        66 ~~~i~iiDtPG------h~df~~~~~~~~~~aD---~avlVvda~~Gv~~qt~-----~~~~~~~~~gi~~iiv~iNK~D  131 (204)
T d2c78a3          66 KRHYSHVDCPG------HADYIKNMITGAAQMD---GAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFMNKVD  131 (204)
T ss_dssp             SCEEEEEECCC------SGGGHHHHHHHHTTCS---SEEEEEETTTCCCHHHH-----HHHHHHHHTTCCCEEEEEECGG
T ss_pred             CeEEEEEeCCC------chhhHHHHHHHHHHCC---EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEEecc
Confidence            45799999999      7788888888885444   58899999654444321     124445567999765 599999


Q ss_pred             cccch
Q 026584          145 LVTNK  149 (236)
Q Consensus       145 Ll~~~  149 (236)
                      ++..+
T Consensus       132 ~~~~~  136 (204)
T d2c78a3         132 MVDDP  136 (204)
T ss_dssp             GCCCH
T ss_pred             cCCCH
Confidence            97644

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.48  E-value=8.4e-07  Score=73.80  Aligned_cols=104  Identities=18%  Similarity=0.357  Sum_probs=69.0

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEeccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMDL  145 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~DL  145 (236)
                      ..|.|+||||      |.+.++.++..+...+   ++|.++||..--.+...=     .+.....+++|+| .++||+|+
T Consensus        89 ~~~~iiD~PG------H~dfv~~~~~g~~~aD---~ailVvda~~G~~~Qt~e-----~~~~~~~~gv~~iiv~vNK~D~  154 (222)
T d1zunb3          89 RKFIIADTPG------HEQYTRNMATGASTCD---LAIILVDARYGVQTQTRR-----HSYIASLLGIKHIVVAINKMDL  154 (222)
T ss_dssp             EEEEEEECCC------SGGGHHHHHHHHTTCS---EEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEEECTTT
T ss_pred             eEEEEEeccc------hhhhhhhhccccccCc---eEEEEeccccCcccchHH-----HHHHHHHcCCCEEEEEEEcccc
Confidence            3689999999      6667788888774333   588899997655554432     2344555799975 55899999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR  206 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~  206 (236)
                      ....+                      .++....+.+..+++..++    +.|+|+|+.++++|.
T Consensus       155 ~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         155 NGFDE----------------------RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTSCH----------------------HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccccc----------------------eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            75431                      1222333334445555543    789999999998874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.47  E-value=4.6e-07  Score=71.89  Aligned_cols=147  Identities=15%  Similarity=0.205  Sum_probs=85.0

Q ss_pred             ChHHHHHHHHHHHHhh----HHHHH-HHhcc-----------cCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCce
Q 026584           38 PNGGLIYCMEHLEDNL----DDWLA-EELDN-----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV  101 (236)
Q Consensus        38 PNGalv~~me~l~~n~----~~wl~-~~i~~-----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~  101 (236)
                      ||.|.-+-++.|...-    .++.. ++...           .....+.++||||+.++      .+.....+..  .. 
T Consensus        14 ~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~l~~--~d-   84 (179)
T d1wb1a4          14 IDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL------IRAVVSAADI--ID-   84 (179)
T ss_dssp             TTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH------HHHHHHHTTS--CC-
T ss_pred             CCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccccc------ccchhhhhhh--cc-
Confidence            7888888888886311    02211 11110           01234688999996542      2333334422  23 


Q ss_pred             EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584          102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS  181 (236)
Q Consensus       102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~  181 (236)
                      ++++++|+..-..+...-     ........++|.+.|+||+|+.+.+ +...                    ...+.+.
T Consensus        85 ~~ilv~d~~~g~~~~~~~-----~~~~~~~~~~p~iiv~NKiD~~~~~-~~~~--------------------~~~~~~~  138 (179)
T d1wb1a4          85 LALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNAGTE-EIKR--------------------TEMIMKS  138 (179)
T ss_dssp             EEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSSCHH-HHHH--------------------HHHHHHH
T ss_pred             ccccccccccccchhhhh-----hhhhhhhcCCcceeccccccccCHH-HHHH--------------------HHHHHHH
Confidence            578889997655544321     1223446799999999999998654 2211                    1111122


Q ss_pred             HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      +.+-...+.-+.++|+|+.+++++++|+..|-+.++-.
T Consensus       139 ~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         139 ILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            22222233347899999999999999999998766543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.45  E-value=5.2e-07  Score=73.70  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELP-HVNILSKM  143 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP-~InVlsK~  143 (236)
                      ...|-++||||      |.+.++..++.+..  .. ++++++||.---.+.+ -.      +.....++.+ .|.++||+
T Consensus        65 ~~~~~~iDtPG------h~~f~~~~~~~~~~--aD-~allVVda~~G~~~QT~~~------~~~a~~~~~~~iIv~iNK~  129 (196)
T d1d2ea3          65 ARHYAHTDCPG------HADYVKNMITGTAP--LD-GCILVVAANDGPMPQTREH------LLLARQIGVEHVVVYVNKA  129 (196)
T ss_dssp             SCEEEEEECSS------HHHHHHHHHHTSSC--CS-EEEEEEETTTCSCHHHHHH------HHHHHHTTCCCEEEEEECG
T ss_pred             eeeEEeecCcc------hHHHHHHHHHHHhh--cC-eEEEEEEcCCCCchhHHHH------HHHHHHhcCCcEEEEEecc
Confidence            45689999999      55555666555532  33 6899999976444432 22      2223446775 55679999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCc----------ccHHHHH
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE----------SSIRYVL  209 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~----------~~i~~L~  209 (236)
                      |++.+...++                       ...+.+-+++..++.    +.|+|+|+.++          +++..|+
T Consensus       130 D~~~~~~~~~-----------------------~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Ll  186 (196)
T d1d2ea3         130 DAVQDSEMVE-----------------------LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLL  186 (196)
T ss_dssp             GGCSCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHH
T ss_pred             cccccHHHHH-----------------------HHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHH
Confidence            9986431111                       111122233444443    78999999987          6899999


Q ss_pred             HHHHHhh
Q 026584          210 SQIDNCI  216 (236)
Q Consensus       210 ~~Id~~~  216 (236)
                      .+||+.+
T Consensus       187 dai~~~i  193 (196)
T d1d2ea3         187 DAVDTYI  193 (196)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhhC
Confidence            9998864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=1.1e-07  Score=75.34  Aligned_cols=118  Identities=18%  Similarity=0.271  Sum_probs=66.4

Q ss_pred             CEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHH--HHHHh---hcCCCEEEEec
Q 026584           68 DYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS--LSAMV---QLELPHVNILS  141 (236)
Q Consensus        68 ~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~s--ls~m~---~l~lP~InVls  141 (236)
                      .+.++||||+++-.. ....++..++.+.+.  .. .+++++........ ........  .....   ..+.|.|.|+|
T Consensus        50 ~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~--~~-i~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~ivv~N  125 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQGVGLGHQFLRHIERT--RV-IVHVIDMSGLEGRD-PYDDYLTINQELSEYNLRLTERPQIIVAN  125 (185)
T ss_dssp             EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC--CE-EEEEEESSCSSCCC-HHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred             EEEEecCCCcccCchHHHHHHHHHHHHHHHh--hh-hhheeeecccccch-hhhhhhhhhhccchhhhhccCCcchhhcc
Confidence            478999999865322 223345566666433  23 34444433222111 11111111  11111   13679999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCIQWG  219 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~~y~  219 (236)
                      |+|+......++.                              +.+.++ -..++++|+.+++|+++|+..|-+.+.-.
T Consensus       126 K~Dl~~~~~~~~~------------------------------~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         126 KMDMPEAAENLEA------------------------------FKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CTTSTTHHHHHHH------------------------------HHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             ccchHhHHHHHHH------------------------------HHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence            9999754311110                              011122 25778999999999999999999887543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.29  E-value=9.7e-07  Score=69.03  Aligned_cols=154  Identities=16%  Similarity=0.238  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHH-hhHHHHHH------HhcccCCCCEEEEeCCCceeee-ecc---ch-HHHHHHHHhh--CCCceEE
Q 026584           38 PNGGLIYCMEHLED-NLDDWLAE------ELDNYLDDDYLVFDCPGQIELF-THV---PV-LRNFVDHLKS--RNFNVCA  103 (236)
Q Consensus        38 PNGalv~~me~l~~-n~~~wl~~------~i~~~~~~~Yil~D~PGQiElf-~~~---~~-~~~iv~~L~~--~~~~~~~  103 (236)
                      ||-|.-.-++.|.. +. . ...      .+..+...++-++||||.-..- .+.   .. ...+.....+  .+.. ++
T Consensus         9 ~nvGKSsLin~l~~~~~-~-~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~   85 (184)
T d2cxxa1           9 SNVGKSTLIYRLTGKKV-R-RGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNID-VA   85 (184)
T ss_dssp             TTSSHHHHHHHHHSCCC-S-SSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCC-EE
T ss_pred             CCCCHHHHHHHHhCCCc-e-eeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhcccccc-hh
Confidence            77788887777753 21 0 000      0111112357899999931100 000   11 1122222221  2333 57


Q ss_pred             EEeecCCCccchhhHHHH------HHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026584          104 VYLLDSQFITDVTKFISG------CMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK  177 (236)
Q Consensus       104 V~LiD~~~~~dp~~~is~------~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~  177 (236)
                      ++++|+.........-..      -.-.+....+.+.|.|.|+||+|+++........+.       ..+....      
T Consensus        86 ~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~-------~~~~~~~------  152 (184)
T d2cxxa1          86 VLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLA-------EKFEVPL------  152 (184)
T ss_dssp             EEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHH-------HHHTCCG------
T ss_pred             eeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHH-------HHhcccc------
Confidence            889998532111110000      000122234469999999999999865422211111       1111000      


Q ss_pred             HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                                ...-..++|+|+.+++++++|+..|-+.+.
T Consensus       153 ----------~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         153 ----------SEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             ----------GGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----------cccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence                      000135789999999999999999987764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=4.8e-05  Score=60.01  Aligned_cols=145  Identities=12%  Similarity=0.137  Sum_probs=80.8

Q ss_pred             ChHHHHHHHHHHHHh--hHHHHHHHhccc-------CCCCEEEEeCCCceeeeeccch------HHHHHHHH-hhCCCce
Q 026584           38 PNGGLIYCMEHLEDN--LDDWLAEELDNY-------LDDDYLVFDCPGQIELFTHVPV------LRNFVDHL-KSRNFNV  101 (236)
Q Consensus        38 PNGalv~~me~l~~n--~~~wl~~~i~~~-------~~~~Yil~D~PGQiElf~~~~~------~~~iv~~L-~~~~~~~  101 (236)
                      ||-|.-+-++.|...  + .-........       .....-++|+||   .......      ...++... .....--
T Consensus        32 ~n~GKSTLin~L~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (195)
T d1svia_          32 SNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFYIINDELHFVDVPG---YGFAKVSKSEREAWGRMIETYITTREELK  107 (195)
T ss_dssp             TTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCC---BCCCSSCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             CCCCHHHHHHHhcCCCce-EEeecccceeeecccccccccceEEEEEe---eccccccccccchhhhHHhhhhccccchh
Confidence            799999999998631  1 1111111100       023456788888   2221111      11222222 2222224


Q ss_pred             EEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          102 CAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       102 ~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      ++++++|+.. +......+      +...-+.+.|.+.|+||+|+++.. +..+.                       .+
T Consensus       108 ~vi~viD~~~~~~~~~~~~------~~~l~~~~~piivv~NK~D~~~~~-~~~~~-----------------------~~  157 (195)
T d1svia_         108 AVVQIVDLRHAPSNDDVQM------YEFLKYYGIPVIVIATKADKIPKG-KWDKH-----------------------AK  157 (195)
T ss_dssp             EEEEEEETTSCCCHHHHHH------HHHHHHTTCCEEEEEECGGGSCGG-GHHHH-----------------------HH
T ss_pred             hhhhhhhcccccccccccc------ccccccccCcceechhhccccCHH-HHHHH-----------------------HH
Confidence            6899999864 33222222      223345789999999999997654 22221                       11


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .+.+.+.......++|+|+.+++|+++|+..|.+.+
T Consensus       158 ~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         158 VVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             HHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            111223333457899999999999999999998764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=6.5e-06  Score=68.98  Aligned_cols=105  Identities=18%  Similarity=0.320  Sum_probs=65.8

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-------cchhhHHHHHHHHHHHHhhcCCCEE-E
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-------TDVTKFISGCMASLSAMVQLELPHV-N  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-------~dp~~~is~~l~sls~m~~l~lP~I-n  138 (236)
                      .+|-|+||||      |.+..+.++..+...  . .+|.++||.-=       ..|..     --.+.....+++|++ .
T Consensus        84 ~~i~iiDtPG------H~df~~~~~~g~~~~--D-~ailvvda~~G~~e~g~~~~~QT-----~eh~~~~~~~gv~~iiv  149 (239)
T d1f60a3          84 YQVTVIDAPG------HRDFIKNMITGTSQA--D-CAILIIAGGVGEFEAGISKDGQT-----REHALLAFTLGVRQLIV  149 (239)
T ss_dssp             EEEEEEECCC------CTTHHHHHHHSSSCC--S-EEEEEEECSHHHHHHHTCTTSHH-----HHHHHHHHHTTCCEEEE
T ss_pred             EEEEEEECCC------cHHHHHHHHHHHHHh--C-EEEEEEECCCCccccccCchHhH-----HHHHHHHHHcCCCeEEE
Confidence            4699999999      677777777666433  3 58889998631       11211     111223345899975 5


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY  207 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~  207 (236)
                      ++||+|+.....                      .+|....+++.+++..++.    +.|+|+|+..++++..
T Consensus       150 ~iNKmD~~~~d~----------------------~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         150 AVNKMDSVKWDE----------------------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             EEECGGGGTTCH----------------------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             EEECCCCCCCCH----------------------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            699999875331                      1233333444455554443    7899999999987643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=4.8e-06  Score=63.61  Aligned_cols=107  Identities=14%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHh--hCCCceEEEEeecCCCcc--chhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLK--SRNFNVCAVYLLDSQFIT--DVTKFISGCMASLSAMVQLELPHVNILSKM  143 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~--dp~~~is~~l~sls~m~~l~lP~InVlsK~  143 (236)
                      .+.++|+||+.+.--  ......+++..  ..+.. ++++++|+....  +.....-.    ......-+.|.|.|+||+
T Consensus        50 ~~~~~d~~g~~~~~~--~~~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~iilv~NK~  122 (161)
T d2gj8a1          50 PLHIIDTAGLREASD--EVERIGIERAWQEIEQAD-RVLFMVDGTTTDAVDPAEIWPE----FIARLPAKLPITVVRNKA  122 (161)
T ss_dssp             EEEEEECCCCSCCSS--HHHHHHHHHHHHHHHTCS-EEEEEEETTTCCCCSHHHHCHH----HHHHSCTTCCEEEEEECH
T ss_pred             eeeeccccccccccc--cchhHHHHHHHHHHHhcc-ccceeeccccccchhhhhhhhh----hhhhcccccceeeccchh
Confidence            578999999877321  11112222211  12344 467778775432  22332211    222334589999999999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ||.+....                                  +.++....++|+|++++++|+.|+++|-+.
T Consensus       123 Dl~~~~~~----------------------------------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         123 DITGETLG----------------------------------MSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             HHHCCCCE----------------------------------EEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhhhHHH----------------------------------HHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            98654311                                  123445789999999999999999998765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=1.8e-05  Score=61.34  Aligned_cols=114  Identities=9%  Similarity=0.097  Sum_probs=67.2

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      ..+.+.|+||+..--.+.......-..+.. .... ++++++|+..-..+. .++      +..+-+.+.|.|.|+||+|
T Consensus        48 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad-~i~~~~~~~~~~~~~~~~~------~~~l~~~~~pviiv~NK~D  120 (171)
T d1mkya1          48 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREAD-LVLFVVDGKRGITKEDESL------ADFLRKSTVDTILVANKAE  120 (171)
T ss_dssp             EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCS-EEEEEEETTTCCCHHHHHH------HHHHHHHTCCEEEEEESCC
T ss_pred             cccccccccceeeeeccccccccccccccccccCc-EEEEeeccccccccccccc------ccccccccccccccchhhh
Confidence            357899999965533222222222122211 2333 578888875433332 333      1223356899999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +++.. +.                        +..    +-+...+...++|+|++++++++.|+..|-+.+
T Consensus       121 l~~~~-~~------------------------~~~----~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l  163 (171)
T d1mkya1         121 NLREF-ER------------------------EVK----PELYSLGFGEPIPVSAEHNINLDTMLETIIKKL  163 (171)
T ss_dssp             SHHHH-HH------------------------HTH----HHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhhhh-hh------------------------HHH----HHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhC
Confidence            96432 10                        000    111234455779999999999999999887754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.96  E-value=9.1e-06  Score=66.84  Aligned_cols=111  Identities=14%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCC-EEEEeccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELP-HVNILSKM  143 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP-~InVlsK~  143 (236)
                      ..+-|+||||      |.+........+.-  .. .+|.++|+.---.+..+  .....=.+.....+++| .|.++||+
T Consensus        81 ~~i~iiDtPG------H~df~~~~~~g~~~--~D-~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~  151 (224)
T d1jnya3          81 YFFTIIDAPG------HRDFVKNMITGASQ--AD-AAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM  151 (224)
T ss_dssp             CEEEECCCSS------STTHHHHHHHTSSC--CS-EEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred             ceeEEeeCCC------cHHHHHHHHHHHHh--hc-eEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcc
Confidence            3578999999      44455555555532  33 58889999753211110  00111122333346776 55569999


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcccHH
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSIR  206 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~i~  206 (236)
                      |+......-                    .++......+.+++..++    -+.|+|+|+..++++.
T Consensus       152 D~~~~~~~~--------------------~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         152 DLTEPPYDE--------------------KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             GGSSSTTCH--------------------HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             cCCCccccH--------------------HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            997532100                    122222333334444333    3899999999999875

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.77  E-value=1.2e-05  Score=67.34  Aligned_cols=113  Identities=15%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCCCEE-E
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELPHV-N  138 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~lP~I-n  138 (236)
                      .+|.++||||...      ..+..++.+.  -.. +++.++|+.-=-       .+.. ..    .+.....+++|++ .
T Consensus       102 ~~i~~iDtPGH~d------f~~~~~~g~~--~aD-~ailVVda~~G~~~~~~~~~~QT-~e----~l~l~~~~~i~~iiv  167 (245)
T d1r5ba3         102 RRFSLLDAPGHKG------YVTNMINGAS--QAD-IGVLVISARRGEFEAGFERGGQT-RE----HAVLARTQGINHLVV  167 (245)
T ss_dssp             EEEEECCCCC-----------------TT--SCS-EEEEEEECSTTHHHHTTSTTCCH-HH----HHHHHHHTTCSSEEE
T ss_pred             ceeeeeccccccc------chhhhhhhhh--hhc-ceeeEEEcCCCccCCccccccch-HH----HHHHHHHcCCCeEEE
Confidence            3589999999544      3344444442  233 588899985411       1111 11    1233445789876 6


Q ss_pred             EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHH
Q 026584          139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVL  209 (236)
Q Consensus       139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~  209 (236)
                      ++||+|+......-.+|     ..+.+           ++...+.++.-  ...-+.|+|+|+.++++|.+++
T Consensus       168 ~iNKmD~~~~~~~e~~~-----~ei~~-----------~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         168 VINKMDEPSVQWSEERY-----KECVD-----------KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             EEECTTSTTCSSCHHHH-----HHHHH-----------HHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EEEcCCCCccchhHHHH-----HHHHH-----------HHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            68999997432000010     01111           11111112211  1113899999999999997654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.62  E-value=0.00011  Score=56.34  Aligned_cols=111  Identities=15%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+.+.|+|||-.....   .+   ..++  +.. ++++++|+.   ++..|-..  .+..+.-. ..-+.|.+.|.||+|
T Consensus        48 ~~~i~D~~G~~~~~~~---~~---~~~~--~~~-~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~D  115 (164)
T d1zd9a1          48 TIKLWDIGGQPRFRSM---WE---RYCR--GVS-AIVYMVDAA---DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD  115 (164)
T ss_dssp             EEEEEEECCSHHHHTT---HH---HHHT--TCS-EEEEEEETT---CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred             EEEEeecccccccccc---cc---cccc--ccc-hhhcccccc---cccccchhhhhhhhhhhhhcccCCcEEEEEeccc
Confidence            4679999998654321   11   1232  233 688888865   33333322  22212111 123789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... ..        ..+.+.+..              +.+... -..++++|+.++++++++++.|=+
T Consensus       116 l~~~~-~~--------~~i~~~~~~--------------~~~~~~-~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         116 LPGAL-DE--------KELIEKMNL--------------SAIQDR-EICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             STTCC-CH--------HHHHHHTTG--------------GGCCSS-CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhh-hH--------HHHHHHHHH--------------HHHHhC-CCEEEEEeCcCCcCHHHHHHHHHH
Confidence            86432 11        111111111              111111 268999999999999998877643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=0.00036  Score=52.60  Aligned_cols=106  Identities=9%  Similarity=0.085  Sum_probs=65.4

Q ss_pred             CEEEEeCCCceeeee---ccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFT---HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~---~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D  144 (236)
                      .+.++||||......   .....++..+.+...  . ++++++|+..-......-.       .......|.+.++||+|
T Consensus        49 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~a--d-~ii~v~d~~~~~~~~~~~~-------~~~~~~~~~i~~~~k~d  118 (160)
T d1xzpa2          49 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKA--D-IVLFVLDASSPLDEEDRKI-------LERIKNKRYLVVINKVD  118 (160)
T ss_dssp             EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHC--S-EEEEEEETTSCCCHHHHHH-------HHHHTTSSEEEEEEECS
T ss_pred             eEEeccccccccCCccHHHHHHHHHHHHHHHhC--C-EEEEEEeCCCCcchhhhhh-------hhhcccccceeeeeecc
Confidence            578899999433222   112234555556443  3 5899999975444332221       12225788999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... ..        ..+.                      +.++. ..++|+|++++++|++|...|-+
T Consensus       119 ~~~~~-~~--------~~~~----------------------~~~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         119 VVEKI-NE--------EEIK----------------------NKLGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             SCCCC-CH--------HHHH----------------------HHHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             ccchh-hh--------HHHH----------------------HHhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            98653 11        1111                      11111 46899999999999999988854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.56  E-value=0.00013  Score=55.61  Aligned_cols=112  Identities=10%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.+.|||||-++-.       ..... -.+.. .+++++|+.-......-.-.+...+.-...-+.|.+.|.||+|+..
T Consensus        47 ~~~~~D~~G~~~~~~-------~~~~~-~~~~~-~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  117 (165)
T d1ksha_          47 KLNIWDVGGQKSLRS-------YWRNY-FESTD-GLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG  117 (165)
T ss_dssp             EEEEEEECCSHHHHT-------TGGGG-CTTCS-EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             ceeeeecCcchhhhh-------HHHhh-hhhhh-cceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccc
Confidence            578999999754211       11111 12333 5788888754433322222211112222235789999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      .. ....        ....+..              +.+.. .-..+++.|+++++++++++..|
T Consensus       118 ~~-~~~~--------~~~~~~~--------------~~~~~-~~~~~~~~Sa~~g~gv~e~~~~l  158 (165)
T d1ksha_         118 AL-SCNA--------IQEALEL--------------DSIRS-HHWRIQGCSAVTGEDLLPGIDWL  158 (165)
T ss_dssp             CC-CHHH--------HHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHH
T ss_pred             cc-CHHH--------HHHHHHh--------------hhhhc-CCCEEEEEECCCCCCHHHHHHHH
Confidence            32 1110        0000000              01111 12689999999999999998865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=8.8e-05  Score=57.62  Aligned_cols=121  Identities=9%  Similarity=0.122  Sum_probs=69.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.|||||-+.-..+...      +  .+.. ++++++|.   +++.+|-+..  .........-++|.+.|.||+|+.
T Consensus        52 l~i~D~~g~~~~~~~~~~~------~--~~~~-~~ilv~d~---~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  119 (177)
T d1kmqa_          52 LALWDTAGLEDYDRLRPLS------Y--PDTD-VILMCFSI---DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  119 (177)
T ss_dssp             EEEEEECCSGGGTTTGGGG------C--TTCS-EEEEEEET---TCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGT
T ss_pred             eeccccCccchhcccchhh------c--ccch-hhhhhccc---chhHHHHHHHHHHHHHHHHhCCCCceEEeeeccccc
Confidence            6789999985432221111      1  2333 57778885   4566664432  222222233479999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ...........         .....-.  .   ....++..+++.+.|+..|++++++|++++..+-++
T Consensus       120 ~~~~~~~~~~~---------~~~~~v~--~---~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         120 NDEHTRRELAK---------MKQEPVK--P---EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA  174 (177)
T ss_dssp             TCHHHHHHHHH---------TTCCCCC--H---HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             chhhHHHHHHH---------hhccccc--H---HHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            65421111000         0000000  0   011134456777899999999999999999888764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.52  E-value=0.00038  Score=53.37  Aligned_cols=111  Identities=16%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D  144 (236)
                      .+.+.|+|||-...       ...... -.+.. ++++++|+.   ++..+-..  .+...... ..-+.|.+.|.||+|
T Consensus        61 ~~~i~d~~g~~~~~-------~~~~~~-~~~~~-~ii~v~d~~---d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~D  128 (176)
T d1fzqa_          61 KLNVWDIGGQRKIR-------PYWRSY-FENTD-ILIYVIDSA---DRKRFEETGQELTELLEEEKLSCVPVLIFANKQD  128 (176)
T ss_dssp             EEEEEECSSCGGGH-------HHHHHH-HTTCS-EEEEEEETT---CGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred             eEeEeeccccccch-------hHHHHH-hhccc-eeEEeeccc---cccchhhhhhhhhhhhhhhccCCCeEEEEEEecc
Confidence            46788999976521       111222 12333 588999975   34443332  22222222 223789999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... ....        +.+.+..              ..+ ......+++.|+.+++++++++..+=+
T Consensus       129 l~~~~-~~~~--------~~~~~~~--------------~~~-~~~~~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         129 LLTAA-PASE--------IAEGLNL--------------HTI-RDRVWQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             STTCC-CHHH--------HHHHTTG--------------GGC-CSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccc-cHHH--------HHHHHHH--------------HHH-HhcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            97543 1111        1111110              001 112368999999999999999887643

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.49  E-value=0.00019  Score=55.78  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=59.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~DLl  146 (236)
                      .+.+.|||||-.........      .  .+. -++++++|+.-........ ..+... .-...-+.|.+.|.||+|+.
T Consensus        62 ~~~i~D~~g~~~~~~~~~~~------~--~~~-~~ii~v~d~~d~~s~~~~~-~~l~~~~~~~~~~~~piliv~NK~Dl~  131 (182)
T d1moza_          62 KLNVWDLGGQTSIRPYWRCY------Y--ADT-AAVIFVVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQP  131 (182)
T ss_dssp             EEEEEEEC----CCTTGGGT------T--TTE-EEEEEEEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred             EEEEEecccccccchhHHhh------h--ccc-eeEEEEeeecccccchhHH-HHHHHHHHhhccCCcceEEEEEeeccc
Confidence            46889999986643221110      1  223 4688899965443333322 122111 11112368999999999996


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ... ...        .+...+..              ..+.+ .-..|++.||.+++++++++..|=+.
T Consensus       132 ~~~-~~~--------~i~~~~~~--------------~~~~~-~~~~~~e~SA~~g~gv~e~~~~l~~~  176 (182)
T d1moza_         132 GAL-SAS--------EVSKELNL--------------VELKD-RSWSIVASSAIKGEGITEGLDWLIDV  176 (182)
T ss_dssp             TCC-CHH--------HHHHHTTT--------------TTCCS-SCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred             ccc-CHH--------HHHHHHHH--------------HHHhh-CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            432 000        01011100              00111 12689999999999999988876554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00024  Score=54.47  Aligned_cols=116  Identities=13%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHh----h-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLK----S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~----~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      .++.+|+||...     .....+.....    . ..-..+++++.|+.........+      .....+-..|.+.|++|
T Consensus        54 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~~~l~~~~~~~i~v~~k  122 (179)
T d1egaa1          54 QAIYVDTPGLHM-----EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMV------LNKLREGKAPVILAVNK  122 (179)
T ss_dssp             EEEEESSSSCCH-----HHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHH------HHHHHSSSSCEEEEEES
T ss_pred             eeEeecCCCcee-----cchhhhhhhhhhccccchhhcceeEEEEecCccchhHHHH------HHHhhhccCceeeeeee
Confidence            457789998422     11222222222    1 11224566777765443333322      12234568899999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE  220 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e  220 (236)
                      +|.+..+.++.                          ..+..+.+.++...++|+|+++++++++|+..|-+.++.++
T Consensus       123 ~d~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe~~  174 (179)
T d1egaa1         123 VDNVQEKADLL--------------------------PHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT  174 (179)
T ss_dssp             TTTCCCHHHHH--------------------------HHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred             eeccchhhhhh--------------------------hHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCCCC
Confidence            99986542221                          11123344566788999999999999999999988886653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.45  E-value=0.00036  Score=53.79  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=63.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.+.|||||-+.-.       ..... -.+. -.+++++|+..........--+...+.....-..|.+.|.||+||-.
T Consensus        57 ~~~i~D~~g~~~~~~-------~~~~~-~~~~-~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          57 KFNVWDVGGQDKIRP-------LWRHY-YTGT-QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD  127 (173)
T ss_dssp             EEEEEEESCCGGGHH-------HHGGG-TTTC-CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             eeEEecCCCcchhhh-------HHHhh-hccc-ceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccc
Confidence            468899999766421       11111 1233 36889999764333332222111112222335799999999999964


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .. ....        ....+.-              +.+... -..+++.|+.++++|.+++..|-+
T Consensus       128 ~~-~~~~--------i~~~~~~--------------~~~~~~-~~~~~e~SA~tg~gv~e~~~~l~~  170 (173)
T d1e0sa_         128 AM-KPHE--------IQEKLGL--------------TRIRDR-NWYVQPSCATSGDGLYEGLTWLTS  170 (173)
T ss_dssp             CC-CHHH--------HHHHTTG--------------GGCCSS-CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             cc-cHHH--------HHHHHHH--------------HHHHhC-CCEEEEeeCCCCcCHHHHHHHHHH
Confidence            32 0100        0000000              011111 257899999999999999988854

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.44  E-value=0.00076  Score=50.06  Aligned_cols=111  Identities=13%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHH---HhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~---m~~l~lP~InVlsK~D  144 (236)
                      .+.+.|+||+.+...      ......  .+. -++++++|..   ++..+......-.-.   ...-..|.+.|.+|+|
T Consensus        45 ~~~~~d~~g~~~~~~------~~~~~~--~~~-~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d  112 (160)
T d1r8sa_          45 SFTVWDVGGQDKIRP------LWRHYF--QNT-QGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD  112 (160)
T ss_dssp             EEEEEECCCCGGGHH------HHHHHT--TTC-SEEEEEEETT---CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             EEEEecCCCcccchh------hhhhhh--ccc-eeEEEEEEec---ChHHHHHHHHHHHHHHHhhcccCceEEEEeeccc
Confidence            578899999766321      111122  233 3578888864   444444333222222   2234688999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... ...+        +......              .... ..-..++|+|+++++++++++..|-+
T Consensus       113 ~~~~~-~~~~--------i~~~~~~--------------~~~~-~~~~~~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         113 LPNAM-NAAE--------ITDKLGL--------------HSLR-HRNWYIQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             STTCC-CHHH--------HHHHTTG--------------GGCS-SCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ccccc-cHHH--------HHHHHHH--------------HHHh-hCCCEEEEeECCCCCCHHHHHHHHHh
Confidence            86432 1110        0000000              0111 22268999999999999999987754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.00023  Score=54.47  Aligned_cols=110  Identities=16%  Similarity=0.296  Sum_probs=64.6

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.+.|||||-+......      ..++  +.. ++++++|...   +..|  +..++-.+. ...-+.|.|.|.||+|+
T Consensus        52 ~~~i~d~~g~~~~~~~~~------~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~i~-~~~~~~~iilVgnK~Dl  118 (164)
T d1z2aa1          52 RLMLWDTAGQEEFDAITK------AYYR--GAQ-ACVLVFSTTD---RESFEAISSWREKVV-AEVGDIPTALVQNKIDL  118 (164)
T ss_dssp             EEEEECCTTGGGTTCCCH------HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHH-HHHCSCCEEEEEECGGG
T ss_pred             eeeeeccCCccchhhhhh------hhhc--cCc-eEEEEEeccc---hhhhhhccccccccc-ccCCCceEEEeeccCCc
Confidence            468999999887443221      1232  233 4677788543   3333  222222222 22348999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH-HHhhc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI-DNCIQ  217 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I-d~~~~  217 (236)
                      .+.. +.    .  .+    +            .+   ++.+.++. .|++.|++++.+|++++..| .+++|
T Consensus       119 ~~~~-~v----~--~~----~------------~~---~~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         119 LDDS-CI----K--NE----E------------AE---GLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             GGGC-SS----C--HH----H------------HH---HHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             ccce-ee----e--eh----h------------hH---HHHHHcCC-EEEEeccCCCcCHHHHHHHHHHHHhC
Confidence            6543 11    0  00    0            01   12234444 79999999999999998775 55543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.0026  Score=48.16  Aligned_cols=90  Identities=13%  Similarity=0.085  Sum_probs=57.2

Q ss_pred             CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026584           98 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK  177 (236)
Q Consensus        98 ~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~  177 (236)
                      ..-..++.+.|+..-......     ..+........|.+.|+||+|++... ....                       
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~k~D~~~~~-~~~~-----------------------  147 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDLDQ-----QMIEWAVDSNIAVLVLLTKADKLASG-ARKA-----------------------  147 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHHHH-----HHHHHHHHTTCCEEEEEECGGGSCHH-HHHH-----------------------
T ss_pred             hheeEEEEeecccccchhHHH-----HHHHHhhhccccccchhhhhhccCHH-HHHH-----------------------
Confidence            333445566665443332222     22444556789999999999998654 1111                       


Q ss_pred             HHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhh
Q 026584          178 LNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       178 l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ....+.+.+..++. ..++|+|++++.|++.|...|++.+
T Consensus       148 ~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         148 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            11222234445554 7999999999999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0006  Score=52.35  Aligned_cols=108  Identities=13%  Similarity=0.089  Sum_probs=57.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHH-HhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSA-MVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~-m~~l~lP~InVlsK~DL  145 (236)
                      ..+.|||||-+....+   +   ..++  +.. +++++.|..   ++..|-...  +.-+.. .-.-.+|.+.|.||+||
T Consensus        50 l~i~D~~g~e~~~~~~---~---~~~~--~~d-~~ilv~d~t---~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl  117 (168)
T d2gjsa1          50 LMVYDIWEQDGGRWLP---G---HCMA--MGD-AYVIVYSVT---DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL  117 (168)
T ss_dssp             EEEEECC-------CH---H---HHHT--SCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTC
T ss_pred             eeeeecccccccceec---c---cchh--hhh-hhceecccc---ccccccccccccchhhcccccccceEEEeecccch
Confidence            4788999996532211   1   1232  333 578888854   555554432  111111 11246899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... +..      ...    .            +   ++...++ ..|+..|++++.++++++..+=+.
T Consensus       118 ~~~~-~v~------~~~----~------------~---~~~~~~~-~~~~e~Sak~~~~v~~~f~~l~~~  160 (168)
T d2gjsa1         118 VRSR-EVS------VDE----G------------R---ACAVVFD-CKFIETSAALHHNVQALFEGVVRQ  160 (168)
T ss_dssp             GGGC-CSC------HHH----H------------H---HHHHHHT-SEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hhhc-chh------HHH----H------------H---HHHHhcC-CEEEEEeCCCCcCHHHHHHHHHHH
Confidence            6432 110      000    0            0   1112233 479999999999999998877543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.31  E-value=0.0013  Score=50.00  Aligned_cols=117  Identities=11%  Similarity=0.009  Sum_probs=65.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      .+.+.|++|+-+....   .+.   .. + ... ++++++|..-.....................+.|.+.|.||+|+..
T Consensus        60 ~~~~~d~~~~~~~~~~---~~~---~~-~-~~~-~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  130 (177)
T d1zj6a1          60 RFLMWDIGGQESLRSS---WNT---YY-T-NTE-FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE  130 (177)
T ss_dssp             EEEEEECCC----CGG---GHH---HH-T-TCC-EEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             EEEEeccccccccccc---hhh---hh-c-cce-eeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccc
Confidence            5788999987553322   111   12 1 233 5778888764443333222233334444456999999999999854


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      .. ...+.        ...+.               .-.....-.+++++|+++++++++++..+-+.+.
T Consensus       131 ~~-~~~~i--------~~~~~---------------~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         131 CM-TVAEI--------SQFLK---------------LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             CC-CHHHH--------HHHHT---------------GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             cC-cHHHH--------HHHHH---------------HHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            33 11100        00000               0001112378999999999999999998876553

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00051  Score=52.21  Aligned_cols=112  Identities=12%  Similarity=0.223  Sum_probs=64.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      .-+.|||||-+.-.   ..   -..+  .+.. +++++.|......-.. +..++.-......-+.|.+.|.||+|+.+.
T Consensus        51 ~~i~d~~g~~~~~~---~~---~~~~--~~~~-~~ilv~d~~~~~s~~~-i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~  120 (164)
T d1yzqa1          51 LQLWDTAGQERFRS---LI---PSYI--RDSA-AAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLADK  120 (164)
T ss_dssp             EEEEEECCSGGGGG---GH---HHHH--TTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred             eeecccCCcchhcc---ch---HHHh--hccc-eEEEeeccccccchhh-hHhhHHHHHHhcCCCceEEEEecccchhhh
Confidence            46899999865321   11   1123  2333 5677777643322222 223332222223358999999999999643


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ  217 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~  217 (236)
                      . ...      .+            ...       ++...++ ..|+.+|++++++|++++..|-+++.
T Consensus       121 ~-~~~------~~------------~~~-------~~~~~~~-~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         121 R-QVS------IE------------EGE-------RKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             C-CSC------HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             h-hhh------HH------------HHH-------HHHHHcC-CEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            3 110      00            001       1112233 47999999999999999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0003  Score=55.09  Aligned_cols=120  Identities=11%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEeccccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      -+.|||||-+.-..+..      .+  .+.. ++++++|.   +++.+|-+..  .....-...-+.|.+.|.||+||..
T Consensus        60 ~i~D~~g~e~~~~~~~~------~~--~~a~-~~ilv~d~---t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~  127 (185)
T d2atxa1          60 GLYDTAGQEDYDRLRPL------SY--PMTD-VFLICFSV---VNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD  127 (185)
T ss_dssp             EEECCCCSSSSTTTGGG------GC--TTCS-EEEEEEET---TCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred             ecccccccchhhhhhhh------cc--cccc-eeeecccc---chHHHHHHHHHHHHHHHHhcCCCCCeeEeeecccccc
Confidence            58999998542111111      11  2233 67888885   5666664432  2222222344889999999999986


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      +.......-.         .....- ..    +...++..+++..+|+..|++++++|++++..+=++
T Consensus       128 ~~~~~~~~~~---------~~~r~v-~~----~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         128 DPKTLARLND---------MKEKPI-CV----EQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             CHHHHHHHTT---------TTCCCC-CH----HHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             chhhhhhhhh---------cccccc-cH----HHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence            5422111111         000000 00    111133446677899999999999999998776543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00063  Score=52.26  Aligned_cols=109  Identities=12%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.+.|||||-+...       +.+.. -.+. -++++++|+..   +..|-  ..++..+.....-+.|.+.|.||+|+
T Consensus        55 ~~~i~D~~G~~~~~~-------~~~~~-~~~~-~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~  122 (174)
T d2bmea1          55 KLQIWDTAGQERFRS-------VTRSY-YRGA-AGALLVYDITS---RETYNALTNWLTDARMLASQNIVIILCGNKKDL  122 (174)
T ss_dssp             EEEEEEECCSGGGHH-------HHHTT-STTC-SEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             eEEEEECCCchhhhh-------hHHHH-hhhC-CEEEEEEeccc---chhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence            357899999776222       11222 1233 36888899654   33333  23333333333457999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+.. +.      ...            ...+       +...++ +.|+.+|+++++++++++..+-+.
T Consensus       123 ~~~~-~~------~~~------------~~~~-------~~~~~~-~~~~e~Sak~~~gi~e~f~~l~~~  165 (174)
T d2bmea1         123 DADR-EV------TFL------------EASR-------FAQENE-LMFLETSALTGENVEEAFVQCARK  165 (174)
T ss_dssp             GGGC-CS------CHH------------HHHH-------HHHHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cchh-ch------hhh------------HHHH-------HHHhCC-CEEEEeeCCCCcCHHHHHHHHHHH
Confidence            5432 10      000            0011       111222 689999999999999998766543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.24  E-value=0.0055  Score=51.47  Aligned_cols=136  Identities=17%  Similarity=0.198  Sum_probs=80.6

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .++-++||||..+      ........|...+   .+|.++|+..=-.+..--     ..-...+.++|.+.++||+|.-
T Consensus        67 ~~~n~iDtPGh~d------F~~e~~~al~~~D---~avlvvda~~Gv~~~t~~-----~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          67 HRVFLLDAPGYGD------FVGEIRGALEAAD---AALVAVSAEAGVQVGTER-----AWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEEEEEECCCSGG------GHHHHHHHHHHCS---EEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEECGGGC
T ss_pred             cceeEEccCchhh------hhhhhhhhhcccC---ceEEEeeccCCccchhHH-----HHHhhhhccccccccccccccc
Confidence            3589999999555      3455566675444   478889987543333322     1344556799999999999974


Q ss_pred             cchhH----hhhhcc----------------------------------------cc--------HHHHHHHhhhc----
Q 026584          147 TNKKE----IEDYLN----------------------------------------PE--------SQFLLSELNQH----  170 (236)
Q Consensus       147 ~~~~~----l~~~l~----------------------------------------~~--------~~~l~~~l~~~----  170 (236)
                      .....    +.+-+.                                        .+        -+.|++.+.+.    
T Consensus       133 ~~~~~~l~~~~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~L  212 (267)
T d2dy1a2         133 GDYYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL  212 (267)
T ss_dssp             CCHHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchhhhhhHHHHhccCcCeEeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            32110    000000                                        00        01122222211    


Q ss_pred             -------chhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          171 -------MAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       171 -------~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                             ..-....+.+.+.+.+.+=.++..+.-|+.+..|+..|+..|-+.+
T Consensus       213 le~yle~~~l~~eel~~~l~~ai~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~  265 (267)
T d2dy1a2         213 LEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEAL  265 (267)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhCCCcccHHHHHHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhC
Confidence                   0012345566666666666667777779999999999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00092  Score=51.50  Aligned_cols=109  Identities=12%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHH-HHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLS-AMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls-~m~~l~lP~InVlsK~DL  145 (236)
                      .-+.|||||-+....+   +..   ++.  .. +++++.|..   ++.+|-.  .+...+. ....-+.|.|.|.||+|+
T Consensus        56 l~~~d~~g~~~~~~~~---~~~---~~~--~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  123 (173)
T d2fn4a1          56 LDILDTAGQEEFGAMR---EQY---MRA--GH-GFLLVFAIN---DRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  123 (173)
T ss_dssp             EEEEECCCTTTTSCCH---HHH---HHH--CS-EEEEEEETT---CHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             eecccccccccccccc---chh---hcc--ce-eeeeecccc---cccccchhhhhhHHHHHHhccCCCceEEEEEeech
Confidence            4579999998754332   111   222  23 577888864   4444432  2222221 122347899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .... +.      ..+            .    ..   ++...++ +.|+..|++++++|++++..+=+.+
T Consensus       124 ~~~~-~~------~~~------------~----~~---~~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         124 ESQR-QV------PRS------------E----AS---AFGASHH-VAYFEASAKLRLNVDEAFEQLVRAV  167 (173)
T ss_dssp             GGGC-CS------CHH------------H----HH---HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhcc-cc------chh------------h----hh---HHHHhcC-CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            6432 10      000            0    01   1112233 5789999999999999988876643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00021  Score=55.03  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh----hcCCCEEEEecc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV----QLELPHVNILSK  142 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~----~l~lP~InVlsK  142 (236)
                      ..+.|||||-+....+...      +  .+. -++++++|+.   ++..|-.  .++--+....    .-++|.+.|.||
T Consensus        54 ~~~~d~~g~~~~~~~~~~~------~--~~~-~~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK  121 (175)
T d1ky3a_          54 MQVWDTAGQERFQSLGVAF------Y--RGA-DCCVLVYDVT---NASSFENIKSWRDEFLVHANVNSPETFPFVILGNK  121 (175)
T ss_dssp             EEEECCC----------CC------S--TTC-CEEEEEEETT---CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred             ceeeccCCchhhhhHHHHH------h--hcc-ceEEEEeecc---cccccchhhhcchhhhhhhhhcccccCcEEEEecc
Confidence            4688999985533221110      1  122 3567777764   3333322  1221111111    137899999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +|+.... ..   ...                     ...-++...++...|++.|++++.+|++++..|-+
T Consensus       122 ~Dl~~~~-~~---v~~---------------------~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~  168 (175)
T d1ky3a_         122 IDAEESK-KI---VSE---------------------KSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR  168 (175)
T ss_dssp             TTSCGGG-CC---SCH---------------------HHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             cchhhhh-cc---hhH---------------------HHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Confidence            9996433 11   110                     00012334677788999999999999999877644

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=0.0027  Score=53.83  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=46.1

Q ss_pred             CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      +.++-|+||||..++..      .....|+..+   .+|.++|+..=-.+..--     .....-+.++|.|.++||+|.
T Consensus        70 ~~~~n~iDtPG~~dF~~------e~~~~l~~~D---~avlVvda~~Gv~~~T~~-----~w~~a~~~~lP~i~fINKmDr  135 (276)
T d2bv3a2          70 DHRINIIDAPGHVDFTI------EVERSMRVLD---GAIVVFDSSQGVEPQSET-----VWRQAEKYKVPRIAFANKMDK  135 (276)
T ss_dssp             TEEEEEECCCSSSSCST------THHHHHHHCC---EEEEEEETTTSSCHHHHH-----HHHHHHTTTCCEEEEEECTTS
T ss_pred             CeEEEEecCCchhhhHH------HHHHHHHhhh---heEEeccccCCcchhHHH-----HHHHHHHcCCCEEEEEecccc
Confidence            34689999999777443      3345564444   478889987654444322     123445679999999999998


Q ss_pred             cc
Q 026584          146 VT  147 (236)
Q Consensus       146 l~  147 (236)
                      -.
T Consensus       136 ~~  137 (276)
T d2bv3a2         136 TG  137 (276)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00076  Score=51.42  Aligned_cols=111  Identities=14%  Similarity=0.207  Sum_probs=62.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHH---HhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~---m~~l~lP~InVlsK~DL  145 (236)
                      .-+.|+|||-.....    +.  ...+.  .. +++++.|..   ++..|-...-+-.-.   ...-++|.+.|.||+|+
T Consensus        53 l~~~d~~g~~~~~~~----~~--~~~~~--a~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl  120 (167)
T d1kaoa_          53 LEILDTAGTEQFASM----RD--LYIKN--GQ-GFILVYSLV---NQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEEEECCCTTCCHHH----HH--HHHHH--CS-EEEEEEETT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             eccccCCCccccccc----hH--HHhhc--cc-ceeeeeeec---chhhhhhhhchhhhhhhhccCCCCCEEEEEEccch
Confidence            567899997653221    11  11222  22 577777754   455554432222111   12247899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW  218 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y  218 (236)
                      .+.. ..    .  .+            ...       ++..+++ ..|+.+|+++++++++++..|-+.+-|
T Consensus       121 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~e~Sak~g~~i~e~f~~i~~~i~~  166 (167)
T d1kaoa_         121 ESER-EV----S--SS------------EGR-------ALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcc-cc----h--HH------------HHH-------HHHHHcC-CeEEEECCCCCcCHHHHHHHHHHHHcc
Confidence            6533 11    0  00            000       1112233 478999999999999998887665543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00047  Score=54.09  Aligned_cols=122  Identities=12%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-+.|||||-+.-..+...      +  .+.. +++++.|.   +++.+|-+.  +..-......-+.|.+.|.||+||
T Consensus        52 ~l~i~D~~g~~~~~~~~~~~------~--~~~~-~~ilv~d~---~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl  119 (191)
T d2ngra_          52 TLGLFDTAGQEDYDRLRPLS------Y--PQTD-VFLVCFSV---VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL  119 (191)
T ss_dssp             EEEEEEECCSGGGTTTGGGG------C--TTCS-EEEEEEET---TCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGG
T ss_pred             eeeccccccchhhhhhhhhc------c--cccc-eeeccccc---chHHHHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            36789999997632221111      1  2333 57888884   445544333  222222233458999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ..........-...          .. ....+-.+   ++..+++...|+.+|++++++|++++..+=+.
T Consensus       120 ~~~~~~~~~~~~~~----------~~-~v~~~~~~---~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~  175 (191)
T d2ngra_         120 RDDPSTIEKLAKNK----------QK-PITPETAE---KLARDLKAVKYVECSALTQKGLKNVFDEAILA  175 (191)
T ss_dssp             GGCHHHHHHHHTTT----------CC-CCCHHHHH---HHHHHTTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccchhhhhhhhcc----------cc-cccHHHHH---HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence            86552222211100          00 00011111   23446666789999999999999998766543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00044  Score=53.11  Aligned_cols=111  Identities=13%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      +-++|||||-+...       +. ...-.+.. ++++++|...-..-.. +..+...+.-...-..|.|.|.||+|+...
T Consensus        56 l~i~Dt~G~e~~~~-------~~-~~~~~~~~-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~  125 (171)
T d2ew1a1          56 LQIWDTAGQERFRS-------IT-QSYYRSAN-ALILTYDITCEESFRC-LPEWLREIEQYASNKVITVLVGNKIDLAER  125 (171)
T ss_dssp             EEEEEECCSGGGHH-------HH-GGGSTTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEECCCchhhHH-------HH-HHHHhccc-eEEEeeecccchhhhh-hhhhhhhhcccccccccEEEEEeecccccc
Confidence            56789999854211       11 11112333 5777787544322222 222222233333457899999999998643


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH-HHHHhh
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS-QIDNCI  216 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~-~Id~~~  216 (236)
                      . +..      .+            ..    +   ++.+.++ ..|+++|++++++|++++. .+.+++
T Consensus       126 ~-~v~------~~------------~~----~---~~~~~~~-~~~~~~SAktg~gV~e~f~~l~~~l~  167 (171)
T d2ew1a1         126 R-EVS------QQ------------RA----E---EFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI  167 (171)
T ss_dssp             C-SSC------HH------------HH----H---HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c-chh------hh------------HH----H---HHHHhCC-CEEEEEccCCCCCHHHHHHHHHHHHH
Confidence            2 110      00            00    0   1112223 4789999999999999965 444544

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00019  Score=55.90  Aligned_cols=111  Identities=14%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHH----HhhcCCCEEEEec
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSA----MVQLELPHVNILS  141 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~----m~~l~lP~InVls  141 (236)
                      .+.++|||||-+....+...      +  .+.. ++++++|...   +..+-+  .++--+..    ...-.+|.+.|.|
T Consensus        52 ~~~~~d~~g~~~~~~~~~~~------~--~~~~-~~i~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~n  119 (184)
T d1vg8a_          52 TMQIWDTAGQERFQSLGVAF------Y--RGAD-CCVLVFDVTA---PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN  119 (184)
T ss_dssp             EEEEEEECSSGGGSCSCCGG------G--TTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred             EEEeeecCCccccccccccc------c--cCcc-EEEEeecccc---hhhhhcchhhHHHHHHHhccccccCCCEEEEEE
Confidence            46789999998866544322      2  2233 5788888743   333222  11111111    1123689999999


Q ss_pred             ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH-HHhhc
Q 026584          142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI-DNCIQ  217 (236)
Q Consensus       142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I-d~~~~  217 (236)
                      |+||-++. ...       .            ...       +...+.+.+.|+..|++++++|.+++..+ ..+++
T Consensus       120 K~Dl~~~~-~~~-------~------------~~~-------~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~  169 (184)
T d1vg8a_         120 KIDLENRQ-VAT-------K------------RAQ-------AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK  169 (184)
T ss_dssp             CTTSSCCC-SCH-------H------------HHH-------HHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eecccccc-hhH-------H------------HHH-------HHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            99985432 000       0            000       11222344789999999999999999765 54544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0015  Score=57.84  Aligned_cols=128  Identities=8%  Similarity=0.144  Sum_probs=68.5

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      +++|+||||-   ..........+++..-..+. +.+++.|..+-..-..+       +...-+.+.|++.|+||+|...
T Consensus       108 ~~~l~DtPG~---~~~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~d~~l-------~~~l~~~~k~~~~V~nK~D~~~  176 (400)
T d1tq4a_         108 NVVFWDLPGI---GSTNFPPDTYLEKMKFYEYD-FFIIISATRFKKNDIDI-------AKAISMMKKEFYFVRTKVDSDI  176 (400)
T ss_dssp             TEEEEECCCG---GGSSCCHHHHHHHTTGGGCS-EEEEEESSCCCHHHHHH-------HHHHHHTTCEEEEEECCHHHHH
T ss_pred             eEEEEeCCCc---ccccccHHHHHHHhhhhcce-EEEEecCCCCCHHHHHH-------HHHHHHcCCCEEEEEeCccccc
Confidence            5899999993   33333444444444322333 34555565433222222       2344557999999999999764


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcc--cHHHHHHHHHHhhc
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKES--SIRYVLSQIDNCIQ  217 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~--~i~~L~~~Id~~~~  217 (236)
                      ....-..-...+.+.+           ..++-..+.+.+...+.  -...++|..+..  ++..|...+.+.+.
T Consensus       177 ~~~~~~~~~~~~~e~~-----------l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         177 TNEADGEPQTFDKEKV-----------LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             HHHHTTCCTTCCHHHH-----------HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             chhhhcccccccHHHH-----------HHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            3211111011111222           22333445555665554  456777776543  68888887776654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.01  E-value=0.00073  Score=51.82  Aligned_cols=110  Identities=10%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      .-+.|||||-+..    .++..  .+  .+. -++++++|+.....-.. +..+..-......-..|.+.|.||+|+...
T Consensus        56 l~~wDt~G~e~~~----~~~~~--~~--~~a-d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  125 (169)
T d3raba_          56 LQIWDTAGQERYR----TITTA--YY--RGA-MGFILMYDITNEESFNA-VQDWSTQIKTYSWDNAQVLLVGNKCDMEDE  125 (169)
T ss_dssp             EEEEEECCSGGGH----HHHHT--TT--TTC-CEEEEEEETTCHHHHHT-HHHHHHHHHHHCCSCCEEEEEEECTTCGGG
T ss_pred             EEEEECCCchhhH----HHHHH--HH--hcC-CEEEEEEECccchhhhh-hhhhhhhhhcccCCcceEEEEEeecccccc
Confidence            4578999986521    11111  12  223 36788888654322222 112222222223346888889999998543


Q ss_pred             hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      . ..    .  .+.            -.+    +   ....+ .+++.+|+++++++++++..+=+.
T Consensus       126 ~-~v----~--~~~------------~~~----~---~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~  165 (169)
T d3raba_         126 R-VV----S--SER------------GRQ----L---ADHLG-FEFFEASAKDNINVKQTFERLVDV  165 (169)
T ss_dssp             C-CS----C--HHH------------HHH----H---HHHHT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             c-cc----c--hhh------------hHH----H---HHHcC-CEEEEecCCCCcCHHHHHHHHHHH
Confidence            2 11    0  000            001    1   12223 479999999999999998876554

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.0024  Score=48.54  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHH--HHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA--SLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~--sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +.+.|||||.+......      ..+  .+.. +++++.|.   +++..|-..-.+  -..-...-..|.+.|.||+|+.
T Consensus        55 ~~i~d~~g~~~~~~~~~------~~~--~~~~-~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  122 (167)
T d1z0ja1          55 FLIWDTAGLERFRALAP------MYY--RGSA-AAIIVYDI---TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT  122 (167)
T ss_dssp             EEEEEECCSGGGGGGTH------HHH--TTCS-EEEEEEET---TCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred             eeeeecCCchhhhHHHH------HHH--hhcc-ceEEEeee---chhhhhhhHHHhhhhhhhccCCcceEEEecccchhc
Confidence            46899999877432111      112  2333 56777785   455555433222  2333344688999999999995


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      +.. ..    .  .+            ...       ++...++ ..|+..|++++.+|++++..|-+.+
T Consensus       123 ~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         123 DVR-EV----M--ER------------DAK-------DYADSIH-AIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             GGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ccc-ch----h--HH------------HHH-------HHHHHcC-CEEEEEecCCCCCHHHHHHHHHHhC
Confidence            432 11    0  00            001       1223344 4799999999999999999887654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0012  Score=50.33  Aligned_cols=108  Identities=14%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHH-HhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSA-MVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~-m~~l~lP~InVlsK~DL  145 (236)
                      .-+.|+|||-.....+    .  ..++..  . +++++.|+..   +..|-.  .++-.+.- .-.-++|.+.|.||+|+
T Consensus        53 l~~~d~~~~~~~~~~~----~--~~~~~~--~-~~iiv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (166)
T d1ctqa_          53 LDILDTAGQEEYSAMR----D--QYMRTG--E-GFLCVFAINN---TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL  120 (166)
T ss_dssp             EEEEEECCCGGGHHHH----H--HHHHHC--S-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTC
T ss_pred             eeeeeccCccccccch----h--hhhhcc--c-ccceeecccc---cccHHHHHHHHHHHHHhcCCCCCeEEEEeccccc
Confidence            4677999977743221    1  112222  2 5777788643   333322  22221111 12246899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ..+.  .    .  .+            .-.       ++..+++ +.|+..|+++++++++++..|=+.+
T Consensus       121 ~~~~--~----~--~~------------~~~-------~~~~~~~-~~~~e~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         121 AART--V----E--SR------------QAQ-------DLARSYG-IPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             SCCC--S----C--HH------------HHH-------HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccc--c----c--HH------------HHH-------HHHHHhC-CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            5432  0    0  00            001       1222344 4799999999999999987775443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0034  Score=47.85  Aligned_cols=112  Identities=15%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHH-HHHHhhcCCCEEEEecccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~s-ls~m~~l~lP~InVlsK~DLl  146 (236)
                      ..-+.|||||-+....+..      .++..  . +.+++.|+..-..-.. +..+..- +.....-..|.|.|.||+|+.
T Consensus        54 ~~~~~d~~g~~~~~~~~~~------~~~~~--~-~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~  123 (171)
T d2erya1          54 RLDILDTAGQEEFGAMREQ------YMRTG--E-GFLLVFSVTDRGSFEE-IYKFQRQILRVKDRDEFPMILIGNKADLD  123 (171)
T ss_dssp             EEEEEECC----CCHHHHH------HHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHHTSSCCSEEEEEECTTCT
T ss_pred             ccccccccccccccccccc------ccccc--c-eEEEeeccccccchhh-HHHHhHHHHhhcccCCCCEEEEEeccchh
Confidence            3688999998885543221      12222  2 5777888543222222 2222221 222233478999999999985


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ..    .  .+    +.            .   ++...++ +.|+.+|++++.+|++++..|=+.+
T Consensus       124 ~~~-~v----~--~~----~~------------~---~~~~~~~-~~~~e~Sak~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         124 HQR-QV----T--QE----EG------------Q---QLARQLK-VTYMEASAKIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             TSC-SS----C--HH----HH------------H---HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhc-cc----h--HH----HH------------H---HHHHHcC-CEEEEEcCCCCcCHHHHHHHHHHHH
Confidence            432 11    0  00    00            1   1223344 4789999999999999998876544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0017  Score=49.80  Aligned_cols=109  Identities=10%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh----hcCCCEEEEecc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV----QLELPHVNILSK  142 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~----~l~lP~InVlsK  142 (236)
                      +-+.|+|||-+...        ......... -+++++.|..   ++..|-.  .+.--+.-+.    .-++|.|.|.||
T Consensus        57 ~~i~d~~g~~~~~~--------~~~~~~~~~-~~~i~~~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK  124 (174)
T d1wmsa_          57 MQIWDTAGQERFRS--------LRTPFYRGS-DCCLLTFSVD---DSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK  124 (174)
T ss_dssp             EEEEECCCCGGGHH--------HHGGGGTTC-SEEEEEEETT---CHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred             EeeecccCcceehh--------hhhhhhhcc-ceEEEEEeee---cccccchhhhHHHHHHHHhccccCCCceEEEeccc
Confidence            56899999765321        111111223 3577777855   3333222  2221122121    136899999999


Q ss_pred             cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH-HHhh
Q 026584          143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI-DNCI  216 (236)
Q Consensus       143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I-d~~~  216 (236)
                      +|+.++.  .    .  .+            .       ..++..+++-..|+..|++++++|++++..+ ++++
T Consensus       125 ~Dl~~~~--v----~--~~------------~-------~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         125 IDISERQ--V----S--TE------------E-------AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             TTCSSCS--S----C--HH------------H-------HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cchhhcc--C----c--HH------------H-------HHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence            9985432  1    0  00            0       0122334555789999999999999997655 4443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.88  E-value=0.0026  Score=48.61  Aligned_cols=107  Identities=14%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      ..+.|||||-+...    ++.  ..++.  .. +++++.|+.   ++..|-+.  ++--+.-. ..-++|.+.|.||+|+
T Consensus        54 l~i~d~~g~~~~~~----~~~--~~~~~--~~-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl  121 (168)
T d1u8za_          54 IDILDTAGQEDYAA----IRD--NYFRS--GE-GFLCVFSIT---EMESFAATADFREQILRVKEDENVPFLLVGNKSDL  121 (168)
T ss_dssp             EEEEECCC---CHH----HHH--HHHHH--CS-EEEEEEETT---CHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred             ccccccccccchhh----hhh--hcccc--cc-eeEEEeecc---chhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccc
Confidence            46899999877321    111  12322  22 467777754   34444332  22111111 1247899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .... +.    .  .+    +        .    +   ++...++ ..|++.|+++++++++++..+=+
T Consensus       122 ~~~~-~v----~--~~----~--------~----~---~~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~  163 (168)
T d1u8za_         122 EDKR-QV----S--VE----E--------A----K---NRADQWN-VNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             GGGC-CS----C--HH----H--------H----H---HHHHHHT-CEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccc-cc----c--HH----H--------H----H---HHHHHcC-CeEEEEcCCCCcCHHHHHHHHHH
Confidence            5332 11    0  00    0        0    0   1112233 57999999999999999876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.003  Score=48.35  Aligned_cols=109  Identities=14%  Similarity=0.255  Sum_probs=54.1

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-+.|||||-+...-++..      +  .+. -++++++|+.   ++..+  +..+...+.....-+.|.+.|.||+|+.
T Consensus        57 l~i~D~~G~e~~~~~~~~~------~--~~~-~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~  124 (173)
T d2fu5c1          57 LQIWDTAGQERFRTITTAY------Y--RGA-MGIMLVYDIT---NEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN  124 (173)
T ss_dssp             EEEEEC---------CCTT------T--TTC-SEEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred             EEEEECCCchhhHHHHHHh------c--cCC-CEEEEEEECC---ChhhHHHHHHHHHHhhhhccCCceEEEEEecccch
Confidence            5679999986543221111      1  123 3688889964   34433  3334334444445679999999999987


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ... ...      .+.    .            .   ....+.+ .+|+.+|+++++++++++..|=+.+
T Consensus       125 ~~~-~~~------~~~----~------------~---~~~~~~~-~~~~e~Sa~~g~gv~e~f~~l~~~i  167 (173)
T d2fu5c1         125 DKR-QVS------KER----G------------E---KLALDYG-IKFMETSAKANINVENAFFTLARDI  167 (173)
T ss_dssp             SCC-CSC------HHH----H------------H---HHHHHHT-CEEEECCC---CCHHHHHHHHHHHH
T ss_pred             hhc-ccH------HHH----H------------H---HHHHhcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            543 110      000    0            0   0111222 5799999999999999997775543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0021  Score=50.43  Aligned_cols=108  Identities=13%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHH--HHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS--LSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~s--ls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-|+|||||-++-..++.      .+  .+.. ++++++|+.   ++..+-...-..  +--...-..|.+.|.||+|+.
T Consensus        57 l~i~Dt~G~e~~~~~~~~------~~--~~a~-~~i~v~d~t---~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~  124 (194)
T d2bcgy1          57 LQIWDTAGQERFRTITSS------YY--RGSH-GIIIVYDVT---DQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK  124 (194)
T ss_dssp             EEEECCTTTTTTTCCCGG------GG--TTCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEECCCchhhHHHHHH------Hh--ccCC-EEEEEEeCc---chhhhhhHhhhhhhhhhcccCCceEEEEEeccccc
Confidence            567899999764322211      12  2333 578888964   444444333222  222334578999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ... ..    .  .+.            ...+    +   .. .-..|+.+|+.++.++++++..+=+.
T Consensus       125 ~~~-~~----~--~~~------------~~~~----~---~~-~~~~~~e~SAk~g~gi~e~f~~l~~~  166 (194)
T d2bcgy1         125 DKR-VV----E--YDV------------AKEF----A---DA-NKMPFLETSALDSTNVEDAFLTMARQ  166 (194)
T ss_dssp             TTC-CS----C--HHH------------HHHH----H---HH-TTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccc-ch----h--HHH------------Hhhh----h---hc-cCcceEEEecCcCccHHHHHHHHHHH
Confidence            532 11    1  000            0000    1   11 22578999999999999998777554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0041  Score=47.52  Aligned_cols=107  Identities=12%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHH-HHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASL-SAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sl-s~m~~l~lP~InVlsK~DL  145 (236)
                      .-+.|||||-+....++.      ..+..  . +++++.|+.   ++.+|-+.  ++..+ ......++|.|.|.||+|+
T Consensus        54 ~~i~d~~g~~~~~~~~~~------~~~~~--~-~~llv~d~~---d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl  121 (169)
T d1x1ra1          54 LDVLDTAGQEEFSAMREQ------YMRTG--D-GFLIVYSVT---DKASFEHVDRFHQLILRVKDRESFPMILVANKVDL  121 (169)
T ss_dssp             EEEEECCSCGGGCSSHHH------HHHHC--S-EEEEEEETT---CHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             ccccccccccccccchhh------hhhhc--c-EEEEecccc---cchhhhccchhhHHHHhhccccCccEEEEecccch
Confidence            468999998775544321      23222  2 577778854   44444432  22211 1122458999999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~  214 (236)
                      .+.. ++    .  .+                   ...++...++ ..|+-+|+++++ +|++++..+=+
T Consensus       122 ~~~~-~v----~--~e-------------------~~~~~~~~~~-~~~~e~Sak~~~~nV~~~F~~l~~  164 (169)
T d1x1ra1         122 MHLR-KV----T--RD-------------------QGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVR  164 (169)
T ss_dssp             STTC-CS----C--HH-------------------HHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred             hhhc-ee----e--hh-------------------hHHHHHHHcC-CEEEEEcCCCCCcCHHHHHHHHHH
Confidence            7543 11    0  00                   0012223444 478999998876 99998876654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0027  Score=48.23  Aligned_cols=109  Identities=11%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+.+.|||||-+. .      .+....-+ +.. +++++.|..-   +..|-  ..++..+--...-..|.+.|.||+|+
T Consensus        54 ~l~i~D~~g~~~~-~------~~~~~~~~-~~d-~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl  121 (166)
T d1z0fa1          54 KLQIWDTAGQERF-R------AVTRSYYR-GAA-GALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIILIGNKADL  121 (166)
T ss_dssp             EEEEEECTTGGGT-C------HHHHHHHH-TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEeccCCchhH-H------HHHHHHhc-CCc-EEEEEeccCc---hHHHHHHHHHHHHHHhhccccceEEEEcccccc
Confidence            4678999998542 1      11111212 233 5677777643   33322  12222222223347888888999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      -... ..    .  .    +               ...++..+++ ..|+..|+++++++++++..|-+.
T Consensus       122 ~~~~-~~----~--~----~---------------~~~~~~~~~~-~~~~e~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         122 EAQR-DV----T--Y----E---------------EAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             GGGC-CS----C--H----H---------------HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhc-cc----H--H----H---------------HHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence            5332 10    0  0    0               0112233444 489999999999999998776543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0017  Score=49.99  Aligned_cols=110  Identities=13%  Similarity=0.244  Sum_probs=62.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHH-HHhhcCCCEEEEecccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLS-AMVQLELPHVNILSKMD  144 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls-~m~~l~lP~InVlsK~D  144 (236)
                      .+.|+|||||-+...   ..+.   ..  .+.. ++++++|+.   ++..+-..  ++.-+- .......|.+.+.||.|
T Consensus        57 ~~~i~Dt~G~~~~~~---~~~~---~~--~~~~-~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d  124 (177)
T d1x3sa1          57 KLAIWDTAGQERFRT---LTPS---YY--RGAQ-GVILVYDVT---RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID  124 (177)
T ss_dssp             EEEEEEECSSGGGCC---SHHH---HH--TTCC-EEEEEEETT---CHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred             EEEEEECCCchhhHH---HHHH---HH--hcCC-EEEEEEECC---CccccccchhhhhhhcccccccceeeEEEeeccc
Confidence            468899999866432   1111   12  2333 578888854   44443332  221111 11245688899999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH-HHHhhc
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ-IDNCIQ  217 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~-Id~~~~  217 (236)
                      ...+.  .    .  ..                   ...++..+++ +.++..|+++++|+++++.. ++++++
T Consensus       125 ~~~~~--v----~--~~-------------------~~~~~~~~~~-~~~~e~Sa~tg~gv~e~f~~l~~~l~~  170 (177)
T d1x3sa1         125 KENRE--V----D--RN-------------------EGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQ  170 (177)
T ss_dssp             SSSCC--S----C--HH-------------------HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccccc--c----c--HH-------------------HHHHHHHHCC-CEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            75432  1    0  00                   0012223344 57999999999999999864 455554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0019  Score=49.02  Aligned_cols=107  Identities=13%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      +-++|||||-+....+   +.   .+ + +. -++++++|+..   +..+  +..+............|.+.+.+|.|+.
T Consensus        53 ~~i~Dt~G~~~~~~~~---~~---~~-~-~~-~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~  120 (166)
T d1g16a_          53 LQIWDTAGQERFRTIT---TA---YY-R-GA-MGIILVYDITD---ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME  120 (166)
T ss_dssp             EEEECCTTGGGTSCCC---HH---HH-T-TE-EEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEECCCchhhHHHH---HH---HH-h-cC-CEEEEEEECCC---ccCHHHHHhhhhhhhccccCcceeeeecchhhhh
Confidence            4579999986543221   11   12 2 22 36888888664   3333  3333334444444578888899999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ++. ...           +..            +   ++...++ +.+++.|+++++++++++..+=+.
T Consensus       121 ~~~-~~~-----------~~~------------~---~~~~~~~-~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_         121 TRV-VTA-----------DQG------------E---ALAKELG-IPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             TCC-SCH-----------HHH------------H---HHHHHHT-CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hhh-hhH-----------HHH------------H---HHHHhcC-CeEEEECCCCCCCHHHHHHHHHHH
Confidence            543 100           000            0   1222344 689999999999999998777543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0037  Score=47.90  Aligned_cols=106  Identities=11%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-|.|||||-++-..+.      ..++  +.. ++++++|+.   ++.+|-..  ++.-+.-...-++|.+.|.||+|+
T Consensus        54 ~~~i~d~~g~e~~~~~~~------~~~~--~~~-~~i~v~d~~---~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl  121 (175)
T d2f9la1          54 KAQIWDTAGQERYRRITS------AYYR--GAV-GALLVYDIA---KHLTYENVERWLKELRDHADSNIVIMLVGNKSDL  121 (175)
T ss_dssp             EEEEEECSSGGGTTCCCH------HHHT--TCS-EEEEEEETT---CHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEecccCCcHHHHHHHH------HHhh--ccC-eEEEEEECC---CcccchhHHHHHHHHHHhcCCCCcEEEEEeeecc
Confidence            467999999854222111      1122  233 578888865   44433332  222222233346899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      .+.. ..      ..+            ....       .... .-..++++|+.+++++++++..+
T Consensus       122 ~~~~-~~------~~~------------~~~~-------~~~~-~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1         122 RHLR-AV------PTD------------EARA-------FAEK-NNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             GGGC-CS------CHH------------HHHH-------HHHH-TTCEEEECCTTTCTTHHHHHHHH
T ss_pred             cccc-cc------hHH------------HHHH-------hhcc-cCceEEEEecCCCcCHHHHHHHH
Confidence            6432 00      000            0000       0111 22688999999999999987554

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0041  Score=47.35  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHH--HHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA--SLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~--sls~m~~l~lP~InVlsK~DL  145 (236)
                      ...+.|||||-+.-.    ++.  ..+  .+.. ++++++|..   ++..|-...-+  .+.-...-+.|.+.|.||+|+
T Consensus        56 ~~~~~d~~g~~~~~~----~~~--~~~--~~~~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl  123 (170)
T d1r2qa_          56 KFEIWDTAGQERYHS----LAP--MYY--RGAQ-AAIVVYDIT---NEESFARAKNWVKELQRQASPNIVIALSGNKADL  123 (170)
T ss_dssp             EEEEEEECCSGGGGG----GHH--HHH--TTCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEeccCCCchhhhh----hHH--HHh--hCcc-eEEEEeccc---hhhHHHHHHHHhhhhhhccCCCceEEeecccccc
Confidence            367889999876321    111  123  2333 567778854   44443322222  222223347899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... ..    +  .+                ..+   ++...++ +.|+.+|++++++|++++..|=+.
T Consensus       124 ~~~~-~v----~--~e----------------~~~---~~~~~~~-~~~~e~SAk~g~~V~e~f~~l~~~  166 (170)
T d1r2qa_         124 ANKR-AV----D--FQ----------------EAQ---SYADDNS-LLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             GGGC-CS----C--HH----------------HHH---HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             cccc-cc----c--HH----------------HHH---HHHHhcC-CEEEEeeCCCCCCHHHHHHHHHHH
Confidence            5432 11    0  00                001   1112233 589999999999999999987554

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0036  Score=47.64  Aligned_cols=109  Identities=15%  Similarity=0.253  Sum_probs=60.5

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-|.|||||-..-.       +.... -.+.. ++++++|...   +..+-  ..+.....-...-..|.+.|.||+|+.
T Consensus        58 l~i~Dt~G~e~~~~-------~~~~~-~~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~  125 (170)
T d2g6ba1          58 LQMWDTAGQERFRS-------VTHAY-YRDAH-ALLLLYDVTN---KASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA  125 (170)
T ss_dssp             EEEEECCCC---------------CC-GGGCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred             EEEEECCCchhhHH-------HHHHh-hcCCc-eeEEEecCCc---ccchhhhhhhhhhhhhccCCCceEEEEEeeechh
Confidence            45889999855321       11111 11233 5788888653   33332  222222323334578999999999987


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      ++. ....                  ..-.       ++...++ +.|+.+|++++++|++++..+=+.+
T Consensus       126 ~~~-~v~~------------------~~~~-------~~~~~~~-~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         126 HER-VVKR------------------EDGE-------KLAKEYG-LPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             SCC-CSCH------------------HHHH-------HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcc-cccH------------------HHHH-------HHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHc
Confidence            543 1100                  0001       1222333 5899999999999999988876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0022  Score=49.58  Aligned_cols=106  Identities=19%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh----hcCCCEEEEecccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV----QLELPHVNILSKMD  144 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~----~l~lP~InVlsK~D  144 (236)
                      .-+.|||||-+.       +.+....- .+.. +++++.|+   +++..|-...-+- .-+.    .-..|.+.|.||+|
T Consensus        66 ~~i~dt~G~e~~-------~~~~~~~~-~~~~-~~i~v~d~---~~~~s~~~~~~~~-~~~~~~~~~~~~~iilv~nK~D  132 (186)
T d2f7sa1          66 LQLWDTAGQERF-------RSLTTAFF-RDAM-GFLLMFDL---TSQQSFLNVRNWM-SQLQANAYCENPDIVLIGNKAD  132 (186)
T ss_dssp             EEEEEEESHHHH-------HHHHHHHH-TTCC-EEEEEEET---TCHHHHHHHHHHH-HTCCCCCTTTCCEEEEEEECTT
T ss_pred             eccccCCcchhh-------HHHHHHHH-hcCC-EEEEEEec---cccccceeeeecc-chhhhhccCCCceEEEEeeecc
Confidence            467788887542       22222221 2344 68889995   5555554332111 1111    12467788899999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... +.    .  .                   +.+.++...++ +.|++.|++++++|++++..+=+
T Consensus       133 l~~~~-~v----~--~-------------------~e~~~~~~~~~-~~~~e~Sak~~~~i~e~f~~l~~  175 (186)
T d2f7sa1         133 LPDQR-EV----N--E-------------------RQARELADKYG-IPYFETSAATGQNVEKAVETLLD  175 (186)
T ss_dssp             CGGGC-CS----C--H-------------------HHHHHHHHHTT-CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             chhhh-cc----h--H-------------------HHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence            95432 11    0  0                   00112234455 48999999999999988876644

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0047  Score=46.74  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEecccccc
Q 026584           70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKMDLV  146 (236)
Q Consensus        70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~DLl  146 (236)
                      -+.||||+-+....+...      .  .+.. +++++.|.   +++.+|-..  ++..+.-.. .-++|.+.|.||+||.
T Consensus        55 ~i~d~~g~~~~~~~~~~~------~--~~~d-~~ilv~d~---~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  122 (167)
T d1xtqa1          55 QLVDTAGQDEYSIFPQTY------S--IDIN-GYILVYSV---TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH  122 (167)
T ss_dssp             EEEECCCCCTTCCCCGGG------T--SSCC-EEEEEEET---TCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG
T ss_pred             eecccccccccccccchh------h--hhhh-hhhhhccc---chhhhhhhhhhhhhhhhhcccccccceeeeccccccc
Confidence            579999988754322211      1  2344 57777884   455555433  222222222 3478999999999985


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      ... +.    .  .+            ...       ++..+++ ..|+.+|++++++|++++..+
T Consensus       123 ~~r-~v----~--~~------------~~~-------~~a~~~~-~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1         123 MER-VI----S--YE------------EGK-------ALAESWN-AAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             GGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECCTTCHHHHHHHHHHH
T ss_pred             ccc-ch----h--HH------------HHH-------HHHHHcC-CEEEEEecCCCCCHHHHHHHH
Confidence            432 11    0  00            001       1122334 478999999999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0058  Score=46.31  Aligned_cols=107  Identities=11%  Similarity=0.145  Sum_probs=59.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHH--HHHH--hhcCCCEEEEecccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS--LSAM--VQLELPHVNILSKMD  144 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~s--ls~m--~~l~lP~InVlsK~D  144 (236)
                      .-+.|||||-+....+      -..++..  . +++++.|..   ++..|-...-+-  +.-.  ..-+.|.+.|.||+|
T Consensus        52 l~~~d~~g~~~~~~~~------~~~~~~a--~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~D  119 (171)
T d2erxa1          52 LQITDTTGSHQFPAMQ------RLSISKG--H-AFILVYSIT---SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD  119 (171)
T ss_dssp             EEEEECCSCSSCHHHH------HHHHHHC--S-EEEEEEETT---CHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred             eccccccccccccccc------cccccce--e-EEEEEeecc---cccchhcccchhhhhhhhhccCCCCcEEEEeeccc
Confidence            4679999987743211      1122222  2 577888854   444444322111  1111  124689999999999


Q ss_pred             cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      +.... +.    .  .+    +        .    +   ++...++ +.|+..|++++++|++++..|=+
T Consensus       120 l~~~~-~v----~--~~----e--------~----~---~~~~~~~-~~~~e~Sak~~~~v~e~f~~l~~  162 (171)
T d2erxa1         120 ESPSR-EV----Q--SS----E--------A----E---ALARTWK-CAFMETSAKLNHNVKELFQELLN  162 (171)
T ss_dssp             GGGGC-CS----C--HH----H--------H----H---HHHHHHT-CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccc-cc----c--HH----H--------H----H---HHHHHcC-CeEEEEcCCCCcCHHHHHHHHHH
Confidence            85432 11    0  00    0        0    1   1112233 47899999999999999876644

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.011  Score=44.67  Aligned_cols=108  Identities=17%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-+.|||||-+....+..      .+  .+. -+++++.|..   ++.+|-.  .++-.......-..|.+.|-||+|+
T Consensus        53 ~~~~~d~~g~~~~~~~~~~------~~--~~~-~~~i~v~d~~---~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl  120 (167)
T d1z08a1          53 NLAIWDTAGQERFHALGPI------YY--RDS-NGAILVYDIT---DEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL  120 (167)
T ss_dssp             EEEEEECCCC-------CC------SS--TTC-SEEEEEEETT---CHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred             eeeeeccCCcceecccchh------hc--cCC-ceeEEEEeCC---chhHHHhhhhhhhhcccccccccceeeecccccc
Confidence            3578999999875432111      01  223 3688888854   4444433  2232333344567888888999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      .+.. +.    .  .+    +               .-++...++ +.|+..|++++.+|++++..|=+
T Consensus       121 ~~~~-~v----~--~~----e---------------~~~~a~~~~-~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1         121 EKER-HV----S--IQ----E---------------AESYAESVG-AKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             GGGC-CS----C--HH----H---------------HHHHHHHTT-CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             cccc-cc----c--hH----H---------------HHHHHHHcC-CeEEEEecCCCcCHHHHHHHHHH
Confidence            6543 11    0  00    0               001223344 47899999999999999876654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0059  Score=46.26  Aligned_cols=109  Identities=10%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh-hcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV-QLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~-~l~lP~InVlsK~DL  145 (236)
                      .-+.|++||-+.-.    ++.  ..++..  . ++++++|+.   ++.+|-.  .++..+.-.. .-.+|.|.|.||+|+
T Consensus        53 ~~~~d~~g~~~~~~----~~~--~~~~~~--~-~~ilv~d~~---~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl  120 (167)
T d1c1ya_          53 LEILDTAGTEQFTA----MRD--LYMKNG--Q-GFALVYSIT---AQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL  120 (167)
T ss_dssp             EEEEEECSSCSSTT----HHH--HHHHHC--S-EEEEEEETT---CHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred             eccccccCcccccc----ccc--cccccc--c-eeEEeeecc---chhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCc
Confidence            68899999876322    121  123222  2 577778865   3333332  2222221111 236899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... ..    .  .                   +...++..++....|+..|+++++++++++..+-+.
T Consensus       121 ~~~~-~~----~--~-------------------~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~  164 (167)
T d1c1ya_         121 EDER-VV----G--K-------------------EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ  164 (167)
T ss_dssp             GGGC-CS----C--H-------------------HHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cccc-cc----c--h-------------------hHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHH
Confidence            6432 10    0  0                   011123345556889999999999999998876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0076  Score=45.94  Aligned_cols=108  Identities=13%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-+.|++||-+....+...      .  .+.. ++++++|..   ++..|-  ..++..+.....-++|.+.|.||+|+
T Consensus        53 ~~~i~d~~g~~~~~~~~~~~------~--~~~d-~~ilv~d~~---~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~  120 (173)
T d2a5ja1          53 KLQIWDTAGQESFRSITRSY------Y--RGAA-GALLVYDIT---RRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL  120 (173)
T ss_dssp             EEEEECCTTGGGTSCCCHHH------H--TTCS-EEEEEEETT---CHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEeecccCccchhhHHHHH------h--hccC-EEEEEEeec---ChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCch
Confidence            46889999997643322111      2  2233 577777854   333332  22332232233357899999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~  214 (236)
                      -... ..    .  .+            ...       .+...++ ..|+.+|++++.+|++++..|-+
T Consensus       121 ~~~~-~~----~--~~------------~~~-------~~a~~~~-~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1         121 ESRR-DV----K--RE------------EGE-------AFAREHG-LIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHH
T ss_pred             hhhh-hh----H--HH------------HHH-------HHHHHcC-CEEEEecCCCCCCHHHHHHHHHH
Confidence            5432 11    0  00            001       1112233 57899999999999999877654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0022  Score=49.59  Aligned_cols=121  Identities=12%  Similarity=0.116  Sum_probs=68.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-+.|++||-+.-..+...      +  .+.. ++++++|+.   ++.+|-+..  ..-..-...-+.|.|.|.||+|+.
T Consensus        55 ~~~~d~~g~~~~~~~~~~~------~--~~~~-~~ilv~d~~---~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~  122 (183)
T d1mh1a_          55 LGLWDTAGQEDYDRLRPLS------Y--PQTD-VSLICFSLV---SPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR  122 (183)
T ss_dssp             EEEECCCCSGGGTTTGGGG------C--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred             EEeecccccccchhhhhhc------c--cccc-eeeeeeccc---hHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence            3578888886533222111      2  2233 578888864   556554432  111112233478999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ............        -.....   .   .....+..+++...|+-.|++++++|++++..+-+.
T Consensus       123 ~~~~~~~~~~~~--------~~~~~~---~---~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         123 DDKDTIEKLKEK--------KLTPIT---Y---PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             TCHHHHHHHHHT--------TCCCCC---H---HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhc--------cccchh---h---HHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHH
Confidence            654222211110        000000   0   011133456777899999999999999998877654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.008  Score=45.68  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=59.4

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHH---HHHHHHhhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM---ASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l---~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .-+.|||||.. |..    +  -..++..  . +++++.|..   ++.+|-+..-   ........-+.|.+.|.||+||
T Consensus        52 l~i~D~~g~~~-~~~----~--~~~~~~~--~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl  118 (168)
T d2atva1          52 MEILDTAGQED-TIQ----R--EGHMRWG--E-GFVLVYDIT---DRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL  118 (168)
T ss_dssp             EEEEECCCCCC-CHH----H--HHHHHHC--S-EEEEEEETT---CHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred             EEEeecccccc-ccc----c--hhhhccc--c-cceeecccC---CccchhhhhhhcccccccccccCcceeeeccchhh
Confidence            57899999854 321    1  1223222  2 477788854   4555544321   1112222347999999999998


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDN  214 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~  214 (236)
                      .+.. ..    +  .+            ...       ++..+++ +.|+-.|++++++ |++++..+=+
T Consensus       119 ~~~r-~V----~--~~------------e~~-------~~a~~~~-~~~~e~Saktg~gnV~e~F~~l~~  161 (168)
T d2atva1         119 DHSR-QV----S--TE------------EGE-------KLATELA-CAFYECSACTGEGNITEIFYELCR  161 (168)
T ss_dssp             GGGC-CS----C--HH------------HHH-------HHHHHHT-SEEEECCTTTCTTCHHHHHHHHHH
T ss_pred             hhhc-cC----c--HH------------HHH-------HHHHHhC-CeEEEEccccCCcCHHHHHHHHHH
Confidence            5432 11    1  00            001       1122334 4789999999985 9988876544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0084  Score=45.40  Aligned_cols=112  Identities=15%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL  145 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL  145 (236)
                      .+-+.|||||-+.-   . ++.  ..++  +.. ++++++|..   ++..|-..  +..-......-..|.+.|.||+|+
T Consensus        53 ~l~i~d~~g~~~~~---~-~~~--~~~~--~~~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~  120 (170)
T d1ek0a_          53 KFEIWDTAGQERFA---S-LAP--MYYR--NAQ-AALVVYDVT---KPQSFIKARHWVKELHEQASKDIIIALVGNKIDM  120 (170)
T ss_dssp             EEEEEEECCSGGGG---G-GHH--HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             cccccccCCchhHH---H-HHH--HHHh--ccc-eEEEEEeCC---cccchhhhhhhhhhhccccccccceeeeeccccc
Confidence            46889999975421   1 111  1232  233 578888865   34444332  222222233457899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .... .... ..  .+            .-    +   ++....+ ..|+..|++++++|++++..|=+-
T Consensus       121 ~~~~-~~~~-v~--~~------------~~----~---~~~~~~~-~~~~e~Sak~g~gV~e~F~~i~~~  166 (170)
T d1ek0a_         121 LQEG-GERK-VA--RE------------EG----E---KLAEEKG-LLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             GGSS-CCCC-SC--HH------------HH----H---HHHHHHT-CEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             cccc-chhh-hh--HH------------HH----H---HHHHHcC-CEEEEecCCCCcCHHHHHHHHHHH
Confidence            6542 1100 11  00            00    1   1223344 489999999999999999887543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.0032  Score=54.86  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=42.0

Q ss_pred             EEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           71 VFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        71 l~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      |+||||++.+.      ......|+-.+   .++.++|+.-=-.+..-     ..+....+.++|.|.|+||+|...
T Consensus       100 liDtPGh~dF~------~ev~~al~~~D---~allVVda~eGv~~qT~-----~~~~~a~~~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2         100 LIDSPGHVDFS------SEVTAALRVTD---GALVVVDTIEGVCVQTE-----TVLRQALGERIKPVVVINKVDRAL  162 (341)
T ss_dssp             EECCCCCCSSC------HHHHHHHHTCS---EEEEEEETTTBSCHHHH-----HHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             EEcCCCcHHHH------HHHHHHHhhcC---ceEEEEecccCcchhHH-----HHHHHHHHcCCCeEEEEECccccc
Confidence            69999977643      45556664333   47888998653332221     124456678999999999999753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.024  Score=43.69  Aligned_cols=103  Identities=14%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhc--------ccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecC
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELD--------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS  109 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~--------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~  109 (236)
                      ||.|.-.-++.|..+-  + .....        ........++|||||-.   ++.........-  ....-.+++++|+
T Consensus        12 ~n~GKTSLln~l~~~~--~-~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~---~~~~~~~~~~~~--~~~~~~~i~~vd~   83 (209)
T d1nrjb_          12 QNSGKTSLLTLLTTDS--V-RPTVVSQEPLSAADYDGSGVTLVDFPGHVK---LRYKLSDYLKTR--AKFVKGLIFMVDS   83 (209)
T ss_dssp             TTSSHHHHHHHHHHSS--C-CCBCCCSSCEEETTGGGSSCEEEECCCCGG---GTHHHHHHHHHH--GGGEEEEEEEEET
T ss_pred             CCCCHHHHHHHHhCCC--C-CCeEEecceEEEEEeCCeEEEEEecccccc---hhhHHHHHHHHH--hhhccccceEEEE
Confidence            6777777777776321  0 00000        01123578999999653   222222222221  2223467888888


Q ss_pred             CCccchhhHHHHH----HHHHHHHhhcCCCEEEEecccccccc
Q 026584          110 QFITDVTKFISGC----MASLSAMVQLELPHVNILSKMDLVTN  148 (236)
Q Consensus       110 ~~~~dp~~~is~~----l~sls~m~~l~lP~InVlsK~DLl~~  148 (236)
                      ......-.-+..+    +..+.....-+.|.+.|+||+|+.+.
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          84 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            7544332223333    33333344468999999999999764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.011  Score=45.66  Aligned_cols=121  Identities=10%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      .-+.|||||-..-..+...      +  .+.. +++++.|.   +++.+|-+..  .....-...-+.|.+.|-||+|+.
T Consensus        52 ~~i~D~~g~~~~~~~~~~~------~--~~~~-~~ilv~d~---~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~  119 (179)
T d1m7ba_          52 LSLWDTSGSPYYDNVRPLS------Y--PDSD-AVLICFDI---SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR  119 (179)
T ss_dssp             EEEEEECCSGGGTTTGGGG------C--TTCS-EEEEEEET---TCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred             eccccccccccccccccch------h--hhhh-hhheeeec---ccCCCHHHHHHHHHHHHhccCCcceEEEEEeccccc
Confidence            4688999987643322111      2  2233 57888885   4666554432  223333344589999999999997


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHh
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNC  215 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~  215 (236)
                      .............        ...-   .   .....++..+++...|+-.|+++++ ++++++..+-++
T Consensus       120 ~~~~~~~~~~~~~--------~~~V---~---~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~  175 (179)
T d1m7ba_         120 TDVSTLVELSNHR--------QTPV---S---YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  175 (179)
T ss_dssp             GCHHHHHHHHTTT--------CCCC---C---HHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHhhhh--------cCcc---h---HHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence            5432221110000        0000   0   0111134446666889999999997 699999866553

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0087  Score=45.61  Aligned_cols=109  Identities=13%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  147 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~  147 (236)
                      ...+.|||||-+.-..+...      +  .+. -+++++.|+..-..-.. +..++.... ...-++|.+.|.||+||..
T Consensus        53 ~l~i~D~~g~~~~~~~~~~~------~--~~~-~~~ilv~d~~~~~Sf~~-~~~~~~~~~-~~~~~~piilvgnK~Dl~~  121 (170)
T d1i2ma_          53 KFNVWDTAGQEKFGGLRDGY------Y--IQA-QCAIIMFDVTSRVTYKN-VPNWHRDLV-RVCENIPIVLCGNKVDIKD  121 (170)
T ss_dssp             EEEEEECTTHHHHSSCGGGG------T--TTC-CEEEEEEETTSGGGGTT-HHHHHHHHH-HHHCSCCEEEEEECCCCSC
T ss_pred             cccccccccccccceecchh------c--ccc-cchhhccccccccccch-hHHHHHHHh-hccCCCceeeecchhhhhh
Confidence            36888999987744322111      1  233 35788888655332222 222222221 1234899999999999965


Q ss_pred             chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                      .. .-.+    ..                       .....++ +.|+.+|++++++|++++..|-+.+
T Consensus       122 ~~-~~~~----~~-----------------------~~~~~~~-~~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         122 RK-VKAK----SI-----------------------VFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             SC-CTTT----SH-----------------------HHHSSCS-SEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             hh-hhhH----HH-----------------------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            43 1100    00                       1112222 5789999999999999987776543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.75  E-value=0.028  Score=41.16  Aligned_cols=92  Identities=12%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584          101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK  180 (236)
Q Consensus       101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~  180 (236)
                      -++++++|..................-....-..|.+.|.||+|+..... ..        .+...+..           
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~--------~i~~~~~~-----------  133 (169)
T d1upta_          74 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SS--------EMANSLGL-----------  133 (169)
T ss_dssp             SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HH--------HHHHHHTG-----------
T ss_pred             hhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HH--------HHHHHHHH-----------
Confidence            35777888765555444444333333333345778888999999975431 10        11111110           


Q ss_pred             HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                         ....+ .-..++|+|+++++++++++..|-+.+
T Consensus       134 ---~~~~~-~~~~~~~~SA~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         134 ---PALKD-RKWQIFKTSATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             ---GGCTT-SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---HHHhc-CCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence               01111 237899999999999999998886643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.057  Score=38.99  Aligned_cols=120  Identities=13%  Similarity=0.030  Sum_probs=66.5

Q ss_pred             CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584           67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  146 (236)
Q Consensus        67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl  146 (236)
                      -...+.|++|+.+........        .... ...++++|+............+.......-....|.+.+.+|.|+.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~  114 (166)
T d2qtvb1          44 IKFTTFDLGGHIQARRLWKDY--------FPEV-NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP  114 (166)
T ss_dssp             CCEEEEECCCSGGGGGGGGGG--------CTTC-SEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSS
T ss_pred             eeEEEEeeccchhhhhhHhhh--------hhhe-eeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccc
Confidence            357889999986654322111        1122 3578888876554444444333333333445788999999999986


Q ss_pred             cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584          147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI  212 (236)
Q Consensus       147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I  212 (236)
                      ... ..        ..+.+.+.....        ...+....-....+++.|+.+++++.+++..+
T Consensus       115 ~~~-~~--------~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l  163 (166)
T d2qtvb1         115 NAV-SE--------AELRSALGLLNT--------TGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL  163 (166)
T ss_dssp             SCC-CH--------HHHHHHHTCSSC--------CC---CCSSCCEEEEEEBTTTTBSHHHHHHHH
T ss_pred             ccC-CH--------HHHHHHhhhhhh--------hHHHhhcccCCCEEEEeeCCCCCCHHHHHHHH
Confidence            432 01        111111110000        00011222223689999999999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.057  Score=41.79  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHH---HHhhcCCCEEEEec
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLS---AMVQLELPHVNILS  141 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls---~m~~l~lP~InVls  141 (236)
                      .+-++|||||-..      .......+.+ + .-.+++++|+.-   ...++..   .+..+.   ...+-..|.+.|.|
T Consensus        48 ~~~~~d~~g~~~~------~~~~~~~~~~-~-~~~~i~v~D~~d---~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~N  116 (207)
T d2fh5b1          48 SLTLIDLPGHESL------RFQLLDRFKS-S-ARAVVFVVDSAA---FQREVKDVAEFLYQVLIDSMALKNSPSLLIACN  116 (207)
T ss_dssp             EEEEEECCCCHHH------HHHHHHHHGG-G-EEEEEEEEETTT---HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred             eeeeeeccccccc------cchhhhhhhh-h-ccccceEEEccc---ccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEE
Confidence            3678899997431      1223334422 2 236888899753   3332221   121211   11233578899999


Q ss_pred             cccccc
Q 026584          142 KMDLVT  147 (236)
Q Consensus       142 K~DLl~  147 (236)
                      |+|+..
T Consensus       117 K~Dl~~  122 (207)
T d2fh5b1         117 KQDIAM  122 (207)
T ss_dssp             CTTSTT
T ss_pred             CcccCC
Confidence            999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.65  E-value=0.012  Score=48.82  Aligned_cols=90  Identities=12%  Similarity=0.287  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHH
Q 026584           87 LRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLS  165 (236)
Q Consensus        87 ~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~  165 (236)
                      .+.+-+.+++.+   ++++++||.. .+.....+..       +++ +-|+|.|+||+||+... ....|.+        
T Consensus         6 ~r~i~~~i~~~D---vIl~V~DaR~P~ss~~~~l~~-------~~~-~Kp~IlVlNK~DLv~~~-~~~~w~~--------   65 (273)
T d1puja_           6 RREVTEKLKLID---IVYELVDARIPMSSRNPMIED-------ILK-NKPRIMLLNKADKADAA-VTQQWKE--------   65 (273)
T ss_dssp             HHHHHHHGGGCS---EEEEEEETTSTTTTSCHHHHH-------HCS-SSCEEEEEECGGGSCHH-HHHHHHH--------
T ss_pred             HHHHHHHHHhCC---EEEEEEECCCCCCCCCHHHHH-------HHc-CCCeEEEEECccCCchH-HHHHHHH--------
Confidence            445555554443   5899999965 3333444433       234 78999999999998654 2322221        


Q ss_pred             HhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584          166 ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI  216 (236)
Q Consensus       166 ~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~  216 (236)
                              .|           . -.....+++++.++.+...+...+.+.+
T Consensus        66 --------~f-----------~-~~~~~~i~isa~~~~~~~~~~~~~~~~l   96 (273)
T d1puja_          66 --------HF-----------E-NQGIRSLSINSVNGQGLNQIVPASKEIL   96 (273)
T ss_dssp             --------HH-----------H-TTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             --------HH-----------H-hcCCccceeecccCCCccccchhhhhhh
Confidence                    00           0 0225667888888777776666555443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.031  Score=41.69  Aligned_cols=106  Identities=16%  Similarity=0.334  Sum_probs=58.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEeccccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMDL  145 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~DL  145 (236)
                      ..+.|+||+-+.+...   ++  ..+  .+.. ++++++|.   +++..|-.  .++.-+.-. ..-+.|.+.|.||+||
T Consensus        53 ~~~~~~~~~~~~~~~~---~~--~~~--~~~d-~~ilv~d~---~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl  121 (165)
T d1z06a1          53 IQLWDTAGQERFRKSM---VQ--HYY--RNVH-AVVFVYDM---TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL  121 (165)
T ss_dssp             EEEEECCCSHHHHTTT---HH--HHH--TTCC-EEEEEEET---TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred             EEEEeccCchhhcccc---ce--eee--cCCC-ceEEEEEe---ehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccc
Confidence            5788999965543211   11  123  2333 68888995   44444433  222222111 1237899999999999


Q ss_pred             ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC---cccHHHHHHHH
Q 026584          146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK---ESSIRYVLSQI  212 (236)
Q Consensus       146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d---~~~i~~L~~~I  212 (236)
                      .... +.    .  .+         .       .+   ++...++. .|+..|+++   +++|+++++.+
T Consensus       122 ~~~~-~v----~--~~---------~-------~~---~~~~~~~~-~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         122 RSAI-QV----P--TD---------L-------AQ---KFADTHSM-PLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             GGGC-CS----C--HH---------H-------HH---HHHHHTTC-CEEECCSSSGGGGSCHHHHHHHH
T ss_pred             hhcc-ch----h--HH---------H-------HH---HHHHHCCC-EEEEEecccCCcCcCHHHHHHHh
Confidence            6432 11    0  00         0       01   22234454 788999976   55888887765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.87  E-value=0.051  Score=44.50  Aligned_cols=108  Identities=9%  Similarity=0.064  Sum_probs=50.5

Q ss_pred             ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEEe
Q 026584           38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYL  106 (236)
Q Consensus        38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~L  106 (236)
                      ||-|....++.+...---.....-..          ....++.++||||--+--.........+....+ .+.. +++|+
T Consensus        41 tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~-~il~v  119 (257)
T d1h65a_          41 GGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTID-VLLYV  119 (257)
T ss_dssp             TTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC-EEEEE
T ss_pred             CCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCC-eEEEE
Confidence            67778888887764210000000000          112258999999943322222222233333222 2222 45566


Q ss_pred             ecCCC--ccchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccch
Q 026584          107 LDSQF--ITDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNK  149 (236)
Q Consensus       107 iD~~~--~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~  149 (236)
                      ++...  ++.-....   +-.+..++  ...-+.|.|+||+|++...
T Consensus       120 ~~~~~~r~~~~~~~~---l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         120 DRLDAYRVDNLDKLV---AKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             EESSCCCCCHHHHHH---HHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             EECCCCCCCHHHHHH---HHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            55432  33222222   11222222  2234789999999998744

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.06  Score=40.70  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             EEEEeecCCCccchhhHHHHHHH--HHHHH-hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHH
Q 026584          102 CAVYLLDSQFITDVTKFISGCMA--SLSAM-VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL  178 (236)
Q Consensus       102 ~~V~LiD~~~~~dp~~~is~~l~--sls~m-~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l  178 (236)
                      +++++.|..   ++.+|-...-+  -+... ..-++|.|.|.||+||.... +.    .  .    +        .-   
T Consensus        80 ~~ilvfd~t---~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~v----~--~----~--------~~---  134 (172)
T d2g3ya1          80 AYLIVYSIT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR-EV----S--V----S--------EG---  134 (172)
T ss_dssp             EEEEEEETT---CHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGC-CS----C--H----H--------HH---
T ss_pred             eeeeeeccc---ccchhhhhhhhhhhhhhccccCCceEEEEeccccccccc-cc----c--H----H--------HH---
Confidence            577777864   45554432221  11111 12479999999999986432 11    0  0    0        00   


Q ss_pred             HHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          179 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       179 ~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                       ++++   ..++ ..|+.+|++++++|++++..+=+.
T Consensus       135 -~~~a---~~~~-~~~~e~Sak~g~~i~~~f~~l~~~  166 (172)
T d2g3ya1         135 -RACA---VVFD-CKFIETSAAVQHNVKELFEGIVRQ  166 (172)
T ss_dssp             -HHHH---HHHT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             -HHHH---HHcC-CeEEEEeCCCCcCHHHHHHHHHHH
Confidence             1111   2233 479999999999999988876554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.59  E-value=0.58  Score=34.10  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=72.6

Q ss_pred             CC-ChHHHHHHHHHHHHhhHHHHHHHhccc---------CCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEE
Q 026584           36 LG-PNGGLIYCMEHLEDNLDDWLAEELDNY---------LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY  105 (236)
Q Consensus        36 LG-PNGalv~~me~l~~n~~~wl~~~i~~~---------~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~  105 (236)
                      +| ||-|.-.-++.|...  .+-. .....         ....+...|++||..........      . + ... .+++
T Consensus        19 vG~~~vGKTsLl~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~-~~~-~~~~   86 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLKDD--RLGQ-HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNY------L-P-AIN-GIVF   86 (186)
T ss_dssp             EEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGG------G-G-GCS-EEEE
T ss_pred             ECCCCCCHHHHHHHHhCC--CCcc-eecccccceeEEEecccccccccccchhhhhhHHhhh------h-c-ccc-eeee
Confidence            35 667777777766532  1211 11111         01246778888887776543322      1 1 222 4677


Q ss_pred             eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584          106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI  183 (236)
Q Consensus       106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~  183 (236)
                      ++|+.....................--+.|.+.+.||.|+....  .++.+.+.....     .......          
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~-----~~~~~~~----------  151 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQ-----TTGKGSV----------  151 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTT-----CCCSSCC----------
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhccc-----chhhhhh----------
Confidence            78854332222222211111111222479999999999986532  112111110000     0000000          


Q ss_pred             HHhh-ccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584          184 ELVD-EYSMVSFMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       184 ~li~-d~~lv~f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      ...+ ....+.++|+||.+++++++++..+-+.
T Consensus       152 ~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         152 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            0001 1223789999999999999999877653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.18  Score=38.40  Aligned_cols=104  Identities=10%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHH---HHhhcCCCEEEEeccc
Q 026584           69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLS---AMVQLELPHVNILSKM  143 (236)
Q Consensus        69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls---~m~~l~lP~InVlsK~  143 (236)
                      ..|.|||||...           ...+..  . +++++.|.   +++.+|-...  .--+.   ...+-.+|.+.|.+|.
T Consensus        54 l~i~Dt~g~~~~-----------~~~~~a--d-~~ilVfd~---~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~  116 (175)
T d2bmja1          54 VLIREEAGAPDA-----------KFSGWA--D-AVIFVFSL---EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD  116 (175)
T ss_dssp             EEEEECSSCCCH-----------HHHHHC--S-EEEEEEET---TCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECT
T ss_pred             EEEeeccccccc-----------cccccc--c-eeEEEeec---ccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeec
Confidence            457899998751           123222  2 56777774   4555554422  11111   1123467899999988


Q ss_pred             ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584          144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID  213 (236)
Q Consensus       144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id  213 (236)
                      |+-... .  +-..  .                   ...-++..+..-..|+.+|++++.++++++..+=
T Consensus       117 d~d~~~-~--~~v~--~-------------------~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~  162 (175)
T d2bmja1         117 RISASS-P--RVVG--D-------------------ARARALCADMKRCSYYETCATYGLNVDRVFQEVA  162 (175)
T ss_dssp             TCCSSS-C--CCSC--H-------------------HHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred             Ccchhh-h--cchh--H-------------------HHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHH
Confidence            874321 0  0000  0                   0000122333447899999999999999877543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.61  E-value=0.064  Score=43.75  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=39.6

Q ss_pred             hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHH
Q 026584          130 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYV  208 (236)
Q Consensus       130 ~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L  208 (236)
                      -..++|.+.|+||+||+... +...+                           .+..+.|.. ...+++|++++++++.|
T Consensus        38 ~~~~i~pvIvlnK~DL~~~~-~~~~~---------------------------~~~~~~~~~~~~v~~vSa~~~~g~~~L   89 (225)
T d1u0la2          38 EKNELETVMVINKMDLYDED-DLRKV---------------------------RELEEIYSGLYPIVKTSAKTGMGIEEL   89 (225)
T ss_dssp             HHTTCEEEEEECCGGGCCHH-HHHHH---------------------------HHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             HHcCCCEEEEEeCcccCCHH-HHHHH---------------------------HHhhcccccceeEEEeccccchhHhhH
Confidence            34699999999999998644 22111                           122233332 57899999999999999


Q ss_pred             HHHHH
Q 026584          209 LSQID  213 (236)
Q Consensus       209 ~~~Id  213 (236)
                      ...+.
T Consensus        90 ~~~l~   94 (225)
T d1u0la2          90 KEYLK   94 (225)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            88774

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.25  E-value=0.38  Score=36.15  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=17.7

Q ss_pred             EEEeeccCcccHHHHHHHHHHh
Q 026584          194 FMPLDLRKESSIRYVLSQIDNC  215 (236)
Q Consensus       194 f~pls~~d~~~i~~L~~~Id~~  215 (236)
                      .+-.||+|.++|+.++..+-..
T Consensus       172 ~~~TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         172 HHFTTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEeeeeCcHHHHHHHHHHHHH
Confidence            3347999999999999887654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.88  E-value=0.08  Score=43.33  Aligned_cols=58  Identities=14%  Similarity=0.314  Sum_probs=35.9

Q ss_pred             hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHH
Q 026584          130 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL  209 (236)
Q Consensus       130 ~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~  209 (236)
                      -.-++|.+.|+||+||..+. +.+..+.        .    ....|..+            -+..+++|+.++++++.|.
T Consensus        38 ~~~~i~pvIvlnK~DL~~~~-~~~~~~~--------~----~~~~y~~~------------g~~v~~~Sa~~~~gl~~L~   92 (231)
T d1t9ha2          38 EANDIQPIICITKMDLIEDQ-DTEDTIQ--------A----YAEDYRNI------------GYDVYLTSSKDQDSLADII   92 (231)
T ss_dssp             HTTTCEEEEEEECGGGCCCH-HHHHHHH--------H----HHHHHHHH------------TCCEEECCHHHHTTCTTTG
T ss_pred             HHcCCCEEEEEecccccccH-HHHHHHH--------H----HHHHHhhc------------cccceeeecCChhHHHHHH
Confidence            34699999999999998764 2221111        0    00011111            1577888999888888776


Q ss_pred             HHH
Q 026584          210 SQI  212 (236)
Q Consensus       210 ~~I  212 (236)
                      ..+
T Consensus        93 ~~l   95 (231)
T d1t9ha2          93 PHF   95 (231)
T ss_dssp             GGG
T ss_pred             Hhh
Confidence            654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.25  E-value=0.81  Score=37.27  Aligned_cols=73  Identities=15%  Similarity=0.195  Sum_probs=36.0

Q ss_pred             CEEEEeCCCceeeeeccch------HHHHH-HHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEE
Q 026584           68 DYLVFDCPGQIELFTHVPV------LRNFV-DHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVN  138 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~------~~~iv-~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~In  138 (236)
                      .-.|+||||-+..-++...      ...++ .+++  +.+.++++++++..  .......+      +..+-.-+-+.+-
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~~il~v~~~~~~~~~~~~~~~------~~~~~~~~~r~i~  203 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQNAIIVAVTPANTDLANSDALQL------AKEVDPEGKRTIG  203 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHH--STTEEEEEEEESSSCSTTCSHHHH------HHHHCSSCSSEEE
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHh--CCCceeEEeecccccccccHHHHH------HHHhCcCCCeEEE
Confidence            4679999996554433211      12222 2332  23444555566542  22232222      1112223568999


Q ss_pred             Eecccccccc
Q 026584          139 ILSKMDLVTN  148 (236)
Q Consensus       139 VlsK~DLl~~  148 (236)
                      |+||+|.+.+
T Consensus       204 Vitk~D~~~~  213 (306)
T d1jwyb_         204 VITKLDLMDK  213 (306)
T ss_dssp             EEECTTSSCS
T ss_pred             EEeccccccc
Confidence            9999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=86.06  E-value=1.3  Score=34.95  Aligned_cols=74  Identities=18%  Similarity=0.108  Sum_probs=41.4

Q ss_pred             CCCEEEEeCCCceeeeeccc-----hHHHHHHHHhh--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE
Q 026584           66 DDDYLVFDCPGQIELFTHVP-----VLRNFVDHLKS--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN  138 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~-----~~~~iv~~L~~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In  138 (236)
                      +.++|||||||    -.|.+     .++++.+..++  ...+.-+++++|+..-.+-..-+..      ..-.+++..+ 
T Consensus        88 ~~d~ilIDTaG----r~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~------~~~~~~~~~l-  156 (207)
T d1okkd2          88 GYDLLFVDTAG----RLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK------FHEAVGLTGV-  156 (207)
T ss_dssp             TCSEEEECCCC----CCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH------HHHHHCCSEE-
T ss_pred             CCCEEEcCccc----cchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH------hhhccCCceE-
Confidence            45899999999    33322     22233333321  1234456788888765543333322      2223466655 


Q ss_pred             Eecccccccchh
Q 026584          139 ILSKMDLVTNKK  150 (236)
Q Consensus       139 VlsK~DLl~~~~  150 (236)
                      ++||.|=..+.+
T Consensus       157 I~TKlDet~~~G  168 (207)
T d1okkd2         157 IVTKLDGTAKGG  168 (207)
T ss_dssp             EEECTTSSCCCT
T ss_pred             EEeccCCCCCcc
Confidence            899999766554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.41  E-value=0.31  Score=36.28  Aligned_cols=132  Identities=10%  Similarity=0.040  Sum_probs=63.3

Q ss_pred             CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch----------hhHHHHHHHHHHHHhhcCCCEE
Q 026584           68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV----------TKFISGCMASLSAMVQLELPHV  137 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp----------~~~is~~l~sls~m~~l~lP~I  137 (236)
                      .+-+.||.||..........      .  .+. -+++++.|.......          ......+..-+.--..-+.|.+
T Consensus        43 ~~~i~D~~Gq~~~~~~~~~~------~--~~~-~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~  113 (195)
T d1svsa1          43 HFKMFDVGGQRSERKKWIHC------F--EGV-TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  113 (195)
T ss_dssp             EEEEEEECCSGGGGGGGGGG------C--TTC-SEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             eeeeeccccccccccchhhc------c--cCC-ceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEE
Confidence            46789999997754322211      1  222 246677765432211          1112222211222233478999


Q ss_pred             EEecccccccchh---HhhhhccccHHHHHHHhhhcchh-HHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHH
Q 026584          138 NILSKMDLVTNKK---EIEDYLNPESQFLLSELNQHMAP-QFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQ  211 (236)
Q Consensus       138 nVlsK~DLl~~~~---~l~~~l~~~~~~l~~~l~~~~~~-~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~  211 (236)
                      .|.||+|+...+.   .+.......       ....... .-..+...+.++...-+.  +-++..||+|+++|+.++..
T Consensus       114 lv~Nk~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~  186 (195)
T d1svsa1         114 LFLNKKDLFEEKIKKSPLTICYPEY-------AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA  186 (195)
T ss_dssp             EEEECHHHHHHHTTTSCGGGTCTTC-------CSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             EEeccchhhhhhccchHHHHHhhhh-------cCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHH
Confidence            9999999875331   111111100       0000000 001111222222222222  45667899999999999988


Q ss_pred             HHHh
Q 026584          212 IDNC  215 (236)
Q Consensus       212 Id~~  215 (236)
                      +-+.
T Consensus       187 v~~~  190 (195)
T d1svsa1         187 VTDV  190 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.80  E-value=1.7  Score=34.99  Aligned_cols=77  Identities=9%  Similarity=0.087  Sum_probs=39.8

Q ss_pred             CEEEEeCCCceeeeeccc--hHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584           68 DYLVFDCPGQIELFTHVP--VLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK  142 (236)
Q Consensus        68 ~Yil~D~PGQiElf~~~~--~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK  142 (236)
                      .-.|+||||-...-....  .....+..+.   -.+.+.+.+++.++..-..-+... .+   +..+-..+-+.+.|+||
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~-~~---~~~~~~~~~r~i~Vltk  201 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KI---AKEVDPQGQRTIGVITK  201 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HH---HHHHCTTCSSEEEEEEC
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH-HH---HHHhCcCCCceeeEEec
Confidence            468999999554433221  2222222221   023444556666664322112111 00   12233456799999999


Q ss_pred             cccccc
Q 026584          143 MDLVTN  148 (236)
Q Consensus       143 ~DLl~~  148 (236)
                      +|++..
T Consensus       202 ~D~~~~  207 (299)
T d2akab1         202 LDLMDE  207 (299)
T ss_dssp             GGGSCT
T ss_pred             cccccc
Confidence            999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=81.72  E-value=2.2  Score=33.65  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCceeeeeccch-------HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE
Q 026584           66 DDDYLVFDCPGQIELFTHVPV-------LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN  138 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~~-------~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In  138 (236)
                      +.++|||||||    ..+.+.       +.++.+..   . ..-.++++++..-.+-..-+..      ..-.+++ .=.
T Consensus        94 ~~d~IlIDTaG----r~~~~~~~~~~~el~~~~~~~---~-~~~~~LVl~a~~~~~~~~~~~~------~~~~~~~-~~l  158 (211)
T d1j8yf2          94 KMEIIIVDTAG----RHGYGEEAALLEEMKNIYEAI---K-PDEVTLVIDASIGQKAYDLASK------FNQASKI-GTI  158 (211)
T ss_dssp             TCSEEEEECCC----SCCTTCHHHHHHHHHHHHHHH---C-CSEEEEEEEGGGGGGHHHHHHH------HHHHCTT-EEE
T ss_pred             CCceEEEecCC----cCccchhhHHHHHHHHHHhhc---C-CceEEEEEecccCcchHHHHhh------hhcccCc-ceE
Confidence            55899999999    333332       22222222   1 2235677788764433332221      1112333 446


Q ss_pred             EecccccccchhH
Q 026584          139 ILSKMDLVTNKKE  151 (236)
Q Consensus       139 VlsK~DLl~~~~~  151 (236)
                      ++||.|-..+.+.
T Consensus       159 I~TKlDet~~~G~  171 (211)
T d1j8yf2         159 IITKMDGTAKGGG  171 (211)
T ss_dssp             EEECTTSCSCHHH
T ss_pred             EEecccCCCcccH
Confidence            7999998766543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=80.18  E-value=1.5  Score=34.72  Aligned_cols=74  Identities=15%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             CCCEEEEeCCCceeeeeccc-----hHHHHHHHHhhC--CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE
Q 026584           66 DDDYLVFDCPGQIELFTHVP-----VLRNFVDHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN  138 (236)
Q Consensus        66 ~~~Yil~D~PGQiElf~~~~-----~~~~iv~~L~~~--~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In  138 (236)
                      +.+.+||||||    ..|++     .++++.+.+++.  ..+.-.+.++|+..-.+-..-+..      ..-.++ +.=.
T Consensus        91 ~~d~ilIDTaG----r~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~------~~~~~~-~~~l  159 (211)
T d2qy9a2          91 NIDVLIADTAG----RLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL------FHEAVG-LTGI  159 (211)
T ss_dssp             TCSEEEECCCC----CGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH------HHHHSC-CCEE
T ss_pred             CCCEEEeccCC----CccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh------hhhccC-CceE
Confidence            45789999999    33332     234444444322  234567788888754333332221      111233 4556


Q ss_pred             Eecccccccchh
Q 026584          139 ILSKMDLVTNKK  150 (236)
Q Consensus       139 VlsK~DLl~~~~  150 (236)
                      ++||.|=..+.+
T Consensus       160 IlTKlDe~~~~G  171 (211)
T d2qy9a2         160 TLTKLDGTAKGG  171 (211)
T ss_dssp             EEECCTTCTTTT
T ss_pred             EEeecCCCCCcc
Confidence            799999766554