Citrus Sinensis ID: 026597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEccccEEEEcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEccccEEEEEcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvdnanwelknccnrdqVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACkltcgdvegmqvhaneggatqtrgGIYWLILpagylgssFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDdlisrrvhssdaekfaevcpcpcngvgwGVIWGIISFAFLCAAMYLGLVILS
Flexible Loop (DISEMBL)
mvdnanwelknccnrdQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Low Complexity Region (SEG)
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGClalalfivlfiaQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNgvgwgviwgiiSFAFLCAAMYLGLVILS
Disordered region (IsUnstruct)
*****NWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVIL*
Disordered Region (DISOPRED)
****ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Disordered Region (DISEMBL)
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Disordered Region (DISPRO)
****ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
449441740	233	PREDICTED: uncharacterized protein LOC10	0.983	0.995	0.866	1e-116
224079325	233	predicted protein [Populus trichocarpa]	0.978	0.991	0.878	1e-115
225452059	233	PREDICTED: uncharacterized protein LOC10	0.983	0.995	0.857	1e-113
297734221	462	unnamed protein product [Vitis vinifera]	0.983	0.502	0.836	1e-113
42563004	234	uncharacterized protein [Arabidopsis tha	0.991	1.0	0.863	1e-113
297838433	235	hypothetical protein ARALYDRAFT_475801 [	0.995	1.0	0.851	1e-112
225455968	233	PREDICTED: uncharacterized protein LOC10	0.983	0.995	0.836	1e-112
356511299	234	PREDICTED: uncharacterized protein LOC10	0.987	0.995	0.845	1e-111
351721488	247	uncharacterized protein LOC100306005 [Gl	0.978	0.935	0.835	1e-110
356527494	234	PREDICTED: uncharacterized protein LOC10	0.978	0.987	0.831	1e-109

>gi|449441740|ref|XP_004138640.1| PREDICTED: uncharacterized protein LOC101216469 [Cucumis sativus] gi|449490096|ref|XP_004158506.1| PREDICTED: uncharacterized protein LOC101228190 [Cucumis sativus]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/232 (86%), Positives = 222/232 (95%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
            NWEL+NCC+RDQV FLVTIGVFT+VILALWRT ++TPFKLITVFLHEASHAIACKLTCG
Sbjct: 2   PNWELRNCCHRDQVLFLVTIGVFTLVILALWRTFIITPFKLITVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
           +VEG+QVHANEGG TQTRGG YWLILPAGYLGSSFWGMA++LASTNL TARIAAGCL LA
Sbjct: 62  EVEGIQVHANEGGVTQTRGGAYWLILPAGYLGSSFWGMAMILASTNLLTARIAAGCLGLA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 184
           L +VLFIA+NWTLRGLC+GFI+FLAV+WVLQE T+VRILRYVILFIGVMNSLFSVYDIYD
Sbjct: 122 LLVVLFIAKNWTLRGLCVGFIIFLAVVWVLQETTTVRILRYVILFIGVMNSLFSVYDIYD 181

Query: 185 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           DLISRRV+SSDAEKFAE+CPCPCNG+GWGVIWG+ISF FLCA++YLGLVILS
Sbjct: 182 DLISRRVNSSDAEKFAELCPCPCNGIGWGVIWGMISFIFLCASIYLGLVILS 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079325|ref|XP_002305821.1| predicted protein [Populus trichocarpa] gi|222848785|gb|EEE86332.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/231 (87%), Positives = 218/231 (94%)

Query: 6   NWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGD 65
           NWELKNCC  DQV +LVTI +F+VVILALWRT ++TPFKLITVFLHEASHAIACKLTCG 
Sbjct: 3   NWELKNCCEGDQVSYLVTIAIFSVVILALWRTFIMTPFKLITVFLHEASHAIACKLTCGQ 62

Query: 66  VEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALAL 125
           VEGMQVHANEGG TQTRGG+YWLILPAGYLGSSFWGMALVLASTNL TARIAAG LA+AL
Sbjct: 63  VEGMQVHANEGGVTQTRGGVYWLILPAGYLGSSFWGMALVLASTNLITARIAAGGLAVAL 122

Query: 126 FIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDD 185
            IVLFIAQNWTLRGLCIGFI+FLAV+WVLQE+T+VRILRYVILFIGVMNSLFSVYDIYDD
Sbjct: 123 LIVLFIAQNWTLRGLCIGFIIFLAVVWVLQEKTTVRILRYVILFIGVMNSLFSVYDIYDD 182

Query: 186 LISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           LISRRVH+SDAEKFAE+CPCPC GVGWGVIWGIISF FL A++YLGLVILS
Sbjct: 183 LISRRVHTSDAEKFAEICPCPCTGVGWGVIWGIISFLFLSASIYLGLVILS 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452059|ref|XP_002283944.1| PREDICTED: uncharacterized protein LOC100253235 [Vitis vinifera] gi|296087266|emb|CBI33640.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/232 (85%), Positives = 214/232 (92%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
           ANWELKNCC  DQV FL TIGVFTVVIL LWRT LLTPFKLITVFLHEASHAIACKLTCG
Sbjct: 2   ANWELKNCCKHDQVVFLATIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QV+A+EGG TQTRGG+YWLILPAGYLGSSFWGM  +LASTNL T+RIAAGC A+A
Sbjct: 62  QVEGIQVNADEGGVTQTRGGVYWLILPAGYLGSSFWGMVFILASTNLLTSRIAAGCFAVA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 184
           L +VLFIA+NWTLRGLCIGFI+FLA+IWVLQE T VRILR+ ILF+GVMNSLFSVYDIYD
Sbjct: 122 LIVVLFIAKNWTLRGLCIGFIIFLAIIWVLQETTKVRILRFFILFMGVMNSLFSVYDIYD 181

Query: 185 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           DLISRRVHSSDAEKFAE+CPCPCNGVGWGVIWG+ISF FL AAMYLGLVILS
Sbjct: 182 DLISRRVHSSDAEKFAEICPCPCNGVGWGVIWGMISFIFLAAAMYLGLVILS 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734221|emb|CBI15468.3| unnamed protein product [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/232 (83%), Positives = 214/232 (92%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
           ANWELK CCN +QV FL TI + TVVILALWRTILLTPFKL+TVFLHEASHAIACKLTCG
Sbjct: 231 ANWELKKCCNHEQVVFLTTISICTVVILALWRTILLTPFKLVTVFLHEASHAIACKLTCG 290

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L++ASTN+ TA+IAAGC A A
Sbjct: 291 HVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLIIASTNVLTAKIAAGCFAFA 350

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 184
           L +VLF+A+NWTLRGLCIGFI+ +AV+W+LQE T +RILRY+ILFIGVMNSLFSVYDIYD
Sbjct: 351 LLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRILRYIILFIGVMNSLFSVYDIYD 410

Query: 185 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           DLISRRV+SSDAEKFAEVCPCPCNGVGWGVIWG+ISF FLC AMYLGLVILS
Sbjct: 411 DLISRRVNSSDAEKFAEVCPCPCNGVGWGVIWGLISFLFLCGAMYLGLVILS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563004|ref|NP_176877.2| uncharacterized protein [Arabidopsis thaliana] gi|117168235|gb|ABK32200.1| At1g67060 [Arabidopsis thaliana] gi|222424301|dbj|BAH20107.1| AT1G67060 [Arabidopsis thaliana] gi|332196470|gb|AEE34591.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/235 (86%), Positives = 220/235 (93%), Gaps = 1/235 (0%)

Query: 2   VDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKL 61
           +D+ NWEL+ CCNR+Q  FL+TIGVFTVVIL LWRT LLTPFKLITVFLHEASHA+ACKL
Sbjct: 1   MDSPNWELRGCCNRNQNTFLITIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAVACKL 60

Query: 62  TCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCL 121
           TCGDVEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA  L
Sbjct: 61  TCGDVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGL 120

Query: 122 ALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYD 181
            LALFIVLFIA+NWTLRGLCIGFIVFLAVIWVLQE T+V+ILRYVILFIGVMNSLFSVYD
Sbjct: 121 GLALFIVLFIAKNWTLRGLCIGFIVFLAVIWVLQELTTVKILRYVILFIGVMNSLFSVYD 180

Query: 182 IYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           IYDDLISRRVHSSDAEKFAE+CPC C G GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 181 IYDDLISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838433|ref|XP_002887098.1| hypothetical protein ARALYDRAFT_475801 [Arabidopsis lyrata subsp. lyrata] gi|297332939|gb|EFH63357.1| hypothetical protein ARALYDRAFT_475801 [Arabidopsis lyrata subsp. lyrata]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/236 (85%), Positives = 221/236 (93%), Gaps = 1/236 (0%)

Query: 1   MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACK 60
           M+++ NWEL+ CCNR+Q  FL+TIG+FTVVIL LWRT LLTPFKLITVFLHEASHA+ACK
Sbjct: 1   MMNSPNWELRGCCNRNQNTFLITIGIFTVVILLLWRTFLLTPFKLITVFLHEASHAVACK 60

Query: 61  LTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGC 120
           LTCGDVEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA  
Sbjct: 61  LTCGDVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAG 120

Query: 121 LALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVY 180
           L LALFIVLFIA+NWTLRGLCIGFIVFLA+IWVLQE T+V+ILRYVILFIGVMNSLFSVY
Sbjct: 121 LGLALFIVLFIAKNWTLRGLCIGFIVFLAIIWVLQELTTVKILRYVILFIGVMNSLFSVY 180

Query: 181 DIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           DIYDDLISRRVHSSDAEKFAE+CPC C G GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 181 DIYDDLISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455968|ref|XP_002278471.1| PREDICTED: uncharacterized protein LOC100247427 [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/232 (83%), Positives = 214/232 (92%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
           ANWELK CCN +QV FL TI + TVVILALWRTILLTPFKL+TVFLHEASHAIACKLTCG
Sbjct: 2   ANWELKKCCNHEQVVFLTTISICTVVILALWRTILLTPFKLVTVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L++ASTN+ TA+IAAGC A A
Sbjct: 62  HVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLIIASTNVLTAKIAAGCFAFA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYD 184
           L +VLF+A+NWTLRGLCIGFI+ +AV+W+LQE T +RILRY+ILFIGVMNSLFSVYDIYD
Sbjct: 122 LLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRILRYIILFIGVMNSLFSVYDIYD 181

Query: 185 DLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           DLISRRV+SSDAEKFAEVCPCPCNGVGWGVIWG+ISF FLC AMYLGLVILS
Sbjct: 182 DLISRRVNSSDAEKFAEVCPCPCNGVGWGVIWGLISFLFLCGAMYLGLVILS 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511299|ref|XP_003524364.1| PREDICTED: uncharacterized protein LOC100814166 [Glycine max]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/233 (84%), Positives = 210/233 (90%)

Query: 4   NANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTC 63
             NWELKNCCN DQV FLVT+ V TVVILAL RT+LL PFKL+TVFLHEASHAIACKLTC
Sbjct: 2   KPNWELKNCCNHDQVVFLVTVAVCTVVILALRRTVLLRPFKLVTVFLHEASHAIACKLTC 61

Query: 64  GDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLAL 123
           G +EG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L+LASTNL TARIAAGC   
Sbjct: 62  GHIEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLILASTNLLTARIAAGCFIA 121

Query: 124 ALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIY 183
           AL IVLFIA+NWTLRGLCIGFI+FL VIW+LQE T VRILRY+ILFIGVMNSLFSVYDIY
Sbjct: 122 ALLIVLFIAKNWTLRGLCIGFIIFLGVIWILQETTKVRILRYIILFIGVMNSLFSVYDIY 181

Query: 184 DDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           DDLISRRVHSSDAEKFAEVCPCPC GVGWGVIWG+ISF FLC A+YLG VILS
Sbjct: 182 DDLISRRVHSSDAEKFAEVCPCPCTGVGWGVIWGLISFVFLCGAVYLGAVILS 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721488|ref|NP_001236187.1| uncharacterized protein LOC100306005 [Glycine max] gi|255627249|gb|ACU13969.1| unknown [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/231 (83%), Positives = 212/231 (91%)

Query: 6   NWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGD 65
           NWEL+NCC+ DQ  F+  +  FTVVIL LWRT LLTPFKLITVFLHEASHAIAC LTCG 
Sbjct: 3   NWELRNCCDHDQKVFIACVAAFTVVILVLWRTFLLTPFKLITVFLHEASHAIACWLTCGK 62

Query: 66  VEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALAL 125
           VEG+QVHANEGG TQTRGGIYW+ILPAGYLGSSFWGMAL+LASTNL TA+IAAGC   AL
Sbjct: 63  VEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMALILASTNLLTAKIAAGCFIAAL 122

Query: 126 FIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDD 185
            +VLF+A+NWTLRGLCIGFIVF+AVIW+LQE+T+V +LRYVILFIGVMNSLFSVYDIYDD
Sbjct: 123 IVVLFLAKNWTLRGLCIGFIVFIAVIWLLQEKTTVHVLRYVILFIGVMNSLFSVYDIYDD 182

Query: 186 LISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           LISRRVHSSDAEKFAEVCPCPCNG GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 183 LISRRVHSSDAEKFAEVCPCPCNGFGWGVIWGMISFAFLCASLYLGLVILS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527494|ref|XP_003532344.1| PREDICTED: uncharacterized protein LOC100816181 [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/231 (83%), Positives = 211/231 (91%)

Query: 6   NWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGD 65
           NWEL+NCC+ DQ  F+  +  FTVVIL LWRT LLTPFKLITVFLHEASHAIAC LTCG 
Sbjct: 3   NWELRNCCDHDQKIFIACVAAFTVVILVLWRTFLLTPFKLITVFLHEASHAIACWLTCGK 62

Query: 66  VEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALAL 125
           VEG+QVHANEGG TQTRGGIYW+ILPAGYLGSSFWGM L+LASTNL TA+IAAGC   AL
Sbjct: 63  VEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMVLILASTNLLTAKIAAGCFIAAL 122

Query: 126 FIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDD 185
            +VLF+A+NWTLRGLCIGFIVF+AVIW+LQE+T+V +LRYVILFIGVMNSLFSVYDIYDD
Sbjct: 123 IVVLFLAKNWTLRGLCIGFIVFIAVIWLLQEKTTVHVLRYVILFIGVMNSLFSVYDIYDD 182

Query: 186 LISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVILS 236
           LISRRVHSSDAEKFAEVCPCPCNG GWGVIWG+ISFAFLCA++YLGLVILS
Sbjct: 183 LISRRVHSSDAEKFAEVCPCPCNGFGWGVIWGMISFAFLCASLYLGLVILS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2019743	234	AT1G67060 "AT1G67060" [Arabido	0.991	1.0	0.778	1.6e-95
ASPGD|ASPL0000071635	269	AN4854 [Emericella nidulans (t	0.733	0.643	0.385	5.9e-25
UNIPROTKB|Q486T6	226	CPS_1186 "Putative membrane pr	0.677	0.707	0.323	1e-13
TIGR_CMR|CPS_1186	226	CPS_1186 "putative membrane pr	0.677	0.707	0.323	1e-13
UNIPROTKB|Q8EE06	233	SO_2584 "Membrane zinc metallo	0.639	0.648	0.283	1.8e-06
TIGR_CMR|SO_2584	233	SO_2584 "hypothetical protein"	0.639	0.648	0.283	1.8e-06

TAIR|locus:2019743 AT1G67060 "AT1G67060" [Arabidopsis thaliana (taxid:3702)]

 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 183/235 (77%), Positives = 199/235 (84%)

Query:     2 VDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKL 61
             +D+ NWEL+ CCNR+Q  FL+TIGVFTVVIL LWRT LLTPFKLITVFLHEASHA+ACKL
Sbjct:     1 MDSPNWELRGCCNRNQNTFLITIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAVACKL 60

Query:    62 TCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCX 121
             TCGDVEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA   
Sbjct:    61 TCGDVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGL 120

Query:   122 XXXXXXXXXXXQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYD 181
                        +NWTLRGLCIGFIVFLAVIWVLQE T+V+ILRYVILFIGVMNSLFSVYD
Sbjct:   121 GLALFIVLFIAKNWTLRGLCIGFIVFLAVIWVLQELTTVKILRYVILFIGVMNSLFSVYD 180

Query:   182 IYDDLISRRVHSSDAEKFAEVCPCPCNXXXXXXXXXXXSFAFLCAAMYLGLVILS 236
             IYDDLISRRVHSSDAEKFAE+CPC C            SFAFLCA++YLGLVILS
Sbjct:   181 IYDDLISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 234

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

ASPGD|ASPL0000071635 AN4854 [Emericella nidulans (taxid:162425)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 74/192 (38%), Positives = 104/192 (54%)

Query:    22 VTIGV---FTVVILALWRTILLT----PFKLITVFLHEASHAIACKLTCGDVEGMQVHAN 74
             VT+GV   + VVI  LW    L     PFK++ +  HE  HAI    T G V+ + +  +
Sbjct:    34 VTLGVMAAYVVVIAILWNVPYLRYSLWPFKMLVIAFHEFGHAITACCTGGRVKSISLDPH 93

Query:    75 EGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXXXXXXXXXQN 134
             EGG T  +GG+  + LPAGYLGSS  G  L+ A  N+  +++A+                
Sbjct:    94 EGGVTHMQGGMAAITLPAGYLGSSIIGALLIFAGFNIIASKVASIVLGVCFLLTLW---- 149

Query:   135 WTLRGLCIGFIVFLAV-----IWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISR 189
             W  R L     V LAV      W +    +   L++V+LFIGVM++L+SV+DI DDLI R
Sbjct:   150 WARRDLLTIVTVLLAVGLLVACWFIAHGEA---LKWVVLFIGVMSALYSVWDICDDLILR 206

Query:   190 RVHSSDAEKFAE 201
             +V+SSDA  FA+
Sbjct:   207 KVNSSDASVFAQ 218

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q486T6 CPS_1186 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 56/173 (32%), Positives = 89/173 (51%)

Query:    17 QVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEG 76
             Q+ FL+   V  ++I  +   I+  P   +  + HE SH IA  LT G++  +Q+ AN  
Sbjct:    17 QLYFLL---VAAIIIRQI--PIVSIPLNWLESYFHEISHGIAALLTGGEIMRIQLFANGA 71

Query:    77 GATQTRGGIYWLILPAGYLGSSFWGMALV-LASTNLTTARIAAGCXXXXXXXXXXXXQNW 135
             G   TRGG+ ++I   GY G++FWG  L  LA+++  TA+I +G               W
Sbjct:    72 GLCTTRGGLSFIISFFGYAGATFWGWLLFKLANSHQRTAQIVSGFMIVLLLVSIIF---W 128

Query:   136 TLRGLCIGFIVFLAVIWVLQ-EETSVRILRYVILFIGV---MNSLFSVYDIYD 184
                 L I  I  LAV++VL  +   +  L+ ++ F G+   +NSLFS   ++D
Sbjct:   129 ARDLLTIIIISSLAVMFVLTIKMRRLYTLQVLLKFFGLSILLNSLFSPTYLFD 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1186 CPS_1186 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 56/173 (32%), Positives = 89/173 (51%)

Query:    17 QVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEG 76
             Q+ FL+   V  ++I  +   I+  P   +  + HE SH IA  LT G++  +Q+ AN  
Sbjct:    17 QLYFLL---VAAIIIRQI--PIVSIPLNWLESYFHEISHGIAALLTGGEIMRIQLFANGA 71

Query:    77 GATQTRGGIYWLILPAGYLGSSFWGMALV-LASTNLTTARIAAGCXXXXXXXXXXXXQNW 135
             G   TRGG+ ++I   GY G++FWG  L  LA+++  TA+I +G               W
Sbjct:    72 GLCTTRGGLSFIISFFGYAGATFWGWLLFKLANSHQRTAQIVSGFMIVLLLVSIIF---W 128

Query:   136 TLRGLCIGFIVFLAVIWVLQ-EETSVRILRYVILFIGV---MNSLFSVYDIYD 184
                 L I  I  LAV++VL  +   +  L+ ++ F G+   +NSLFS   ++D
Sbjct:   129 ARDLLTIIIISSLAVMFVLTIKMRRLYTLQVLLKFFGLSILLNSLFSPTYLFD 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8EE06 SO_2584 "Membrane zinc metalloprotease" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 127 (49.8 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 46/162 (28%), Positives = 76/162 (46%)

Query:    25 GVFTV-VILALWRT---ILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ 80
             G+F + ++LAL  T    +  PFK +  + HE SH IA  L+ G V  +Q+  N  G   
Sbjct:    25 GLFIIELMLALLITRIPYISVPFKWLESYFHELSHGIATVLSGGIVSHIQLFPNGAGLCF 84

Query:    81 TRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXXXXXXXXXQNWTLRGL 140
             ++GG   +I  AGY G++ WG  + L +T     R++                 W    L
Sbjct:    85 SQGGSTIMIGFAGYFGAACWGYIIYLLATWPRGIRVSFAFLGALVVFSGVL---WGRDLL 141

Query:   141 CIGFIVFLAVIWVLQEETSV-RILRYVILFIGV---MNSLFS 178
              +  +V L ++ +L  + S  +IL   +  IG+   +N+L S
Sbjct:   142 TMAILVVLTIVLLLPLKLSKNKILTQFLRIIGLVIMLNALAS 183

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2584 SO_2584 "hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 127 (49.8 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 46/162 (28%), Positives = 76/162 (46%)

Query:    25 GVFTV-VILALWRT---ILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ 80
             G+F + ++LAL  T    +  PFK +  + HE SH IA  L+ G V  +Q+  N  G   
Sbjct:    25 GLFIIELMLALLITRIPYISVPFKWLESYFHELSHGIATVLSGGIVSHIQLFPNGAGLCF 84

Query:    81 TRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXXXXXXXXXQNWTLRGL 140
             ++GG   +I  AGY G++ WG  + L +T     R++                 W    L
Sbjct:    85 SQGGSTIMIGFAGYFGAACWGYIIYLLATWPRGIRVSFAFLGALVVFSGVL---WGRDLL 141

Query:   141 CIGFIVFLAVIWVLQEETSV-RILRYVILFIGV---MNSLFS 178
              +  +V L ++ +L  + S  +IL   +  IG+   +N+L S
Sbjct:   142 TMAILVVLTIVLLLPLKLSKNKILTQFLRIIGLVIMLNALAS 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.141   0.459    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       213   0.00084  112 3  11 22  0.39    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  191 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.17u 0.23s 15.40t   Elapsed:  00:00:01
  Total cpu time:  15.17u 0.23s 15.40t   Elapsed:  00:00:01
  Start:  Fri May 10 21:29:55 2013   End:  Fri May 10 21:29:56 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam13398	201	pfam13398, Peptidase_M50B, Peptidase M50B-like	2e-50

>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like

 Score =  162 bits (413), Expect = 2e-50
 Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 11/208 (5%)

Query: 24  IGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRG 83
           +    V +L LW   +L PF+L+  F HE  HA+A  LT G V+G+++H +  G T +RG
Sbjct: 1   LIALVVALLLLWPPPILRPFRLLVTFFHELGHALAALLTGGRVKGIELHPDGSGLTVSRG 60

Query: 84  GIY----WLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRG 139
                  +L L AGYLG + WG+ L+L +     AR         L ++L   +N     
Sbjct: 61  RPGGLGMFLTLAAGYLGPALWGLLLILLAFA-GRARALLWLGVALLLVLLLWVRNLFGLL 119

Query: 140 LCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKF 199
           + +     L  +W L       +L +V+LF+GV   L +V DI DDLI RR  SSDA++ 
Sbjct: 120 ILLLTGALLLALWWLAPPQ---VLAFVLLFLGVFLLLGAVRDI-DDLIRRRAPSSDADQL 175

Query: 200 AEVCPCPCNGVGWGVIWGIISFAFLCAA 227
           AE+   P     WG +W +IS   L   
Sbjct: 176 AELTGLP--AWLWGGLWLLISLGCLALG 201

This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PF13398	200	Peptidase_M50B: Peptidase M50B-like	100.0
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	98.1
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	97.79
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	97.47
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	97.29
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	97.23
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	97.23
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	97.15
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	96.92
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.27
PRK10779	449	zinc metallopeptidase RseP; Provisional	95.65
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	93.75
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	93.6
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	90.99
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	90.54
cd04279	156	ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM	90.34
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	88.84
PF01432	458	Peptidase_M3: Peptidase family M3 This Prosite mot	88.4
cd04278	157	ZnMc_MMP Zinc-dependent metalloprotease, matrix me	88.33
cd04277	186	ZnMc_serralysin_like Zinc-dependent metalloproteas	86.74
CHL00176	638	ftsH cell division protein; Validated	86.2
cd06457	458	M3A_MIP Peptidase M3 mitochondrial intermediate pe	85.94
PRK10280	681	dipeptidyl carboxypeptidase II; Provisional	85.72
smart00235	140	ZnMc Zinc-dependent metalloprotease. Neutral zinc	85.7
cd06459	427	M3B_Oligoendopeptidase_F Peptidase family M3B Olig	85.28
COG0339	683	Dcp Zn-dependent oligopeptidases [Amino acid trans	84.99
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	84.93
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	83.9
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	83.07
cd06258	365	Peptidase_M3_like The peptidase M3-like family, al	82.93
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	82.9
cd06455	472	M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; P	82.83
cd06456	422	M3A_DCP_Oligopeptidase_A Peptidase family M3 dipep	82.8
cd00203	167	ZnMc Zinc-dependent metalloprotease. This super-fa	82.54
PF13582	124	Reprolysin_3: Metallo-peptidase family M12B Reprol	81.73
PRK10911	680	oligopeptidase A; Provisional	81.38
TIGR02290	587	M3_fam_3 oligoendopeptidase, pepF/M3 family. The M	81.36

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=100.00  E-value=9.2e-44  Score=306.19  Aligned_cols=195  Identities=37%  Similarity=0.634  Sum_probs=170.1

Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhCCceeeEEEeeCCCcceEeec--Cc-eeeeeccccchHHHHH
Q 026597           25 GVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRG--GI-YWLILPAGYLGSSFWG  101 (236)
Q Consensus        25 ~~~~v~~~~lW~~~~~~p~r~l~t~~HE~GHalaalltGg~v~~I~l~~d~sG~t~s~G--g~-~~~i~~AGY~gp~l~G  101 (236)
                      +++.++...+|+.++++|+|+++|++||+|||++|+++|||+++++++||+||.|.++|  ++ ++++++|||++|+++|
T Consensus         2 i~~~~~l~~~~~~~~~~~~~~l~t~~HE~gHal~a~l~G~~v~~i~l~~~~~G~~~~~~~~~~~~~~i~~aGyl~~~l~g   81 (200)
T PF13398_consen    2 IALIVALLLLWNPPIWYPFRLLVTFVHELGHALAALLTGGRVKGIVLFPDGSGVTVSSGPSGIGRFLIALAGYLGPALFG   81 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEeCCCceEEEecCCCcchhHHhcccchHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999998  54 6899999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026597          102 MALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYD  181 (236)
Q Consensus       102 ~~l~~~~~~~~~~~~~~~~l~~ll~~~l~~vRn~~g~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~~flGv~~~l~sv~d  181 (236)
                      ..+++++++++. +.........+..+++++||++++..++.++++..+.++.++   ++..++..+|+|++.++|+++|
T Consensus        82 ~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~~l~~~~~  157 (200)
T PF13398_consen   82 LLLLWLLFSGWA-RAVLFLGLLILLVLLLFVRNWFGILVVILFGALLIALWFFAP---PWILRFILLFIGVFLLLYSVRD  157 (200)
T ss_pred             HHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHcC
Confidence            999999875555 444334444445556678999999999887777766665553   6888899999999999999999


Q ss_pred             HHHHHhcCCCCCChHHHHHhhCCCCCCchhHHHHHHHHHHHHHHH
Q 026597          182 IYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCA  226 (236)
Q Consensus       182 ~~~~~~~~~~~~SDa~~La~lt~~~~P~~~W~~lw~~~sl~~l~~  226 (236)
                      + ||+++|+.++|||+++||+||+  |+++|+.+|.++|++++.+
T Consensus       158 i-~~l~~~~~~~sDa~~la~lt~~--p~~~W~~~~~~~s~~~l~~  199 (200)
T PF13398_consen  158 I-DDLFRRRVNASDADQLARLTGL--PAWVWGLLWLAISLACLAA  199 (200)
T ss_pred             H-HHHhcCCCCCChHHHHHHHHCC--CHHHHHHHHHHHHHHHHHh
Confidence            8 8889999999999999999998  9999999999999999865

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=98.10  E-value=6.4e-06  Score=71.43  Aligned_cols=65  Identities=22%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCceeeEEEeeCCCcceEeec-C----ceeeeeccccchHHHHHHHHHHHh
Q 026597           43 FKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRG-G----IYWLILPAGYLGSSFWGMALVLAS  108 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltGg~v~~I~l~~d~sG~t~s~G-g----~~~~i~~AGY~gp~l~G~~l~~~~  108 (236)
                      .-...+..||+||+++|...|.|++++++.|-++ .+..+. .    .+..++.||+....+.+.....+.
T Consensus        36 ~l~~~v~iHElgH~~~A~~~G~~v~~i~l~p~Gg-~~~~~~~~~~~~~~~lIalAGPl~n~~la~~~~~l~  105 (208)
T cd06161          36 LLFLSVLLHELGHALVARRYGIRVRSITLLPFGG-VAELEEEPETPKEEFVIALAGPLVSLLLAGLFYLLY  105 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCccceEEEeeee-eeeeccCCCChhHheeeeeehHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999754 444443 1    269999999999998887765543

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=97.79  E-value=4.3e-05  Score=67.33  Aligned_cols=64  Identities=23%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCceeeEEEeeCCCcceEeecCc-----eeeeeccccchHHHHHHHHHHHh
Q 026597           44 KLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGI-----YWLILPAGYLGSSFWGMALVLAS  108 (236)
Q Consensus        44 r~l~t~~HE~GHalaalltGg~v~~I~l~~d~sG~t~s~Gg~-----~~~i~~AGY~gp~l~G~~l~~~~  108 (236)
                      -.+.++.||+||+++|...|.|++++++.|= +|.+..++..     +..++.||.....+.+.......
T Consensus        52 l~~~v~iHElgH~~~A~~~G~~v~~i~l~p~-Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~i~~~l~  120 (227)
T cd06164          52 LFASVLLHELGHSLVARRYGIPVRSITLFLF-GGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLLLS  120 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeECeEEEEee-eEEEEecCCCCCHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999985 5787776521     58999999999988887655443

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.47  E-value=0.00026  Score=60.53  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEE
Q 026597           45 LITVFLHEASHAIACKLTCGDVEGMQ   70 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~~I~   70 (236)
                      .+.++.||+||.++|...|-|++++.
T Consensus         9 ~~~v~iHElGH~~~Ar~~Gv~v~~f~   34 (182)
T cd06163           9 GILIFVHELGHFLVAKLFGVKVEEFS   34 (182)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeeeEee
Confidence            35688999999999999999999843

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.29  E-value=0.00047  Score=59.01  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCceeeEEEeeC-----CCcceEeecC--c---eeeeeccccchHHHHHHHHHH
Q 026597           43 FKLITVFLHEASHAIACKLTCGDVEGMQVHAN-----EGGATQTRGG--I---YWLILPAGYLGSSFWGMALVL  106 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltGg~v~~I~l~~d-----~sG~t~s~Gg--~---~~~i~~AGY~gp~l~G~~l~~  106 (236)
                      .-......||+||+++|...|-|.++.++.|+     -++.+..+..  .   +..++.||.....+.+.....
T Consensus        39 ~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~  112 (183)
T cd06160          39 ALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLI  112 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEEEEecCCCCChhHhehhhhhHHHHHHHHHHHHHH
Confidence            34567789999999999999999999999998     6676665542  1   588999998888776655443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.23  E-value=0.00022  Score=60.15  Aligned_cols=28  Identities=36%  Similarity=0.519  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEe
Q 026597           45 LITVFLHEASHAIACKLTCGDVEGMQVH   72 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~~I~l~   72 (236)
                      .+.+.+||+||+++|...|.|+++++..
T Consensus         7 ~i~i~~HE~gH~~~a~~~G~~~~~~~~~   34 (192)
T PF02163_consen    7 LISIVLHELGHALAARLYGDKVPRFEGG   34 (192)
T ss_dssp             HHHHHHHHHHHHHHHHTTT--B--EEE-
T ss_pred             cccccccccccccccccccccccccccc
Confidence            5678999999999999999999998654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.23  E-value=0.00034  Score=63.14  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEE-----------eeCCCcceEeecCceeeeeccccchHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAIACKLTCGDVEGMQV-----------HANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLA  107 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~~I~l-----------~~d~sG~t~s~Gg~~~~i~~AGY~gp~l~G~~l~~~  107 (236)
                      .++..+||+||+++|...|.+++++.+           ++|+......+-+.+..++.||.....+.+......
T Consensus       118 ~isv~iHElgHa~~Ar~~G~~V~~iGl~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvla~i~~~l  191 (263)
T cd06159         118 VVGVVVHELSHGILARVEGIKVKSGGLLLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVALIAFAL  191 (263)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEECchhHHHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHHHHHHHHH
Confidence            456889999999999999999999754           333322111111237899999999888777554433

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.15  E-value=0.00029  Score=59.07  Aligned_cols=29  Identities=28%  Similarity=0.285  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEee
Q 026597           45 LITVFLHEASHAIACKLTCGDVEGMQVHA   73 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~~I~l~~   73 (236)
                      .+.+..||+||+++|...|.|++++.+..
T Consensus         8 ~i~i~iHE~gH~~~A~~~G~~~~~~~~~~   36 (180)
T cd05709           8 LISVTVHELGHALVARRLGVKVARFSGGF   36 (180)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCchheeeeE
Confidence            45788999999999999999988766644

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=96.92  E-value=0.0033  Score=57.21  Aligned_cols=62  Identities=23%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEeeC---CCcceEee--------cCceeeeeccccchHHHHHHHHHH
Q 026597           45 LITVFLHEASHAIACKLTCGDVEGMQVHAN---EGGATQTR--------GGIYWLILPAGYLGSSFWGMALVL  106 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~~I~l~~d---~sG~t~s~--------Gg~~~~i~~AGY~gp~l~G~~l~~  106 (236)
                      .+...+||+|||++|..-|-+++++.+.+=   .+|.+.-.        .+.+..++.||.....+.+.....
T Consensus       135 ~isvvvHElgHal~A~~~gi~V~~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~i~~~  207 (277)
T cd06162         135 LISGVVHEMGHGVAAVREQVRVNGFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGLVGYL  207 (277)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeeceEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHHHHHH
Confidence            557889999999999999999999876432   24555431        122688999999999888766543

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>TIGR00054 RIP metalloprotease RseP

Probab=96.27  E-value=0.0063  Score=58.08  Aligned_cols=63  Identities=21%  Similarity=0.293  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceee--------------------EEEeeCCCcceEee---------------------c
Q 026597           45 LITVFLHEASHAIACKLTCGDVEG--------------------MQVHANEGGATQTR---------------------G   83 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~~--------------------I~l~~d~sG~t~s~---------------------G   83 (236)
                      -+.+++||+||.++|..+|-|+++                    ++..|=++ .+...                     .
T Consensus        14 ~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg-~v~~~g~~~~~~~~~~~~~~~~f~~~~   92 (420)
T TIGR00054        14 AVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGG-YVKMKGLDKEMEVKPPETDGDLFNNKS   92 (420)
T ss_pred             HHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcc-eEeeccCCcccccCCcchhhhhhccCC
Confidence            356889999999999999999994                    55555322 11111                     0


Q ss_pred             Cc-eeeeeccccchHHHHHHHHHHHh
Q 026597           84 GI-YWLILPAGYLGSSFWGMALVLAS  108 (236)
Q Consensus        84 g~-~~~i~~AGY~gp~l~G~~l~~~~  108 (236)
                      -+ |.++.+||.+.-.+++.+++...
T Consensus        93 ~~~r~~i~~aGp~~N~~~a~~~~~~~  118 (420)
T TIGR00054        93 VFQKAIIIFAGPLANFIFAIFVYIFI  118 (420)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHH
Confidence            11 57888888888888876655543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=95.65  E-value=0.02  Score=55.05  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCceeeEEEee
Q 026597           46 ITVFLHEASHAIACKLTCGDVEGMQVHA   73 (236)
Q Consensus        46 l~t~~HE~GHalaalltGg~v~~I~l~~   73 (236)
                      +.+++||+||-++|.++|=||+++.+-.
T Consensus        16 ~li~vHElGHfl~Ar~~gv~V~~FsiGf   43 (449)
T PRK10779         16 VLITVHEFGHFWVARRCGVRVERFSIGF   43 (449)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeeEEEeec
Confidence            3578999999999999999999988765

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=0.068  Score=50.96  Aligned_cols=29  Identities=34%  Similarity=0.483  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCceeeEEEe
Q 026597           44 KLITVFLHEASHAIACKLTCGDVEGMQVH   72 (236)
Q Consensus        44 r~l~t~~HE~GHalaalltGg~v~~I~l~   72 (236)
                      -++..-+||+|||+||.--|=+++++-|+
T Consensus       130 lvi~~vvHElGHalAA~segV~vngfgIf  158 (484)
T KOG2921|consen  130 LVITVVVHELGHALAAASEGVQVNGFGIF  158 (484)
T ss_pred             HHHHHHHHHhhHHHHHHhcCceeeeeEEE
Confidence            34566799999999999999999887665

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=93.60  E-value=0.064  Score=46.57  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHhC--CceeeEEEeeCCC--cceEe
Q 026597           46 ITVFLHEASHAIACKLTC--GDVEGMQVHANEG--GATQT   81 (236)
Q Consensus        46 l~t~~HE~GHalaalltG--g~v~~I~l~~d~s--G~t~s   81 (236)
                      =-+..||.|||+++.+++  .++..+.|.|.++  |.|..
T Consensus        29 ~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~   68 (213)
T PF01434_consen   29 RRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQF   68 (213)
T ss_dssp             HHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEE
T ss_pred             HHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEe
Confidence            346789999999999998  4789999988754  44444

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=90.99  E-value=0.12  Score=41.39  Aligned_cols=16  Identities=38%  Similarity=0.495  Sum_probs=13.5

Q ss_pred             hhhHHHHHHHHHHHHH
Q 026597           42 PFKLITVFLHEASHAI   57 (236)
Q Consensus        42 p~r~l~t~~HE~GHal   57 (236)
                      +..+..|+.||+||++
T Consensus       102 ~~~~~~v~~HEiGHaL  117 (154)
T PF00413_consen  102 GNDLQSVAIHEIGHAL  117 (154)
T ss_dssp             SEEHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhcccccc
Confidence            3467789999999997

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=90.54  E-value=0.21  Score=42.48  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcee----eEEEee
Q 026597           45 LITVFLHEASHAIACKLTCGDVE----GMQVHA   73 (236)
Q Consensus        45 ~l~t~~HE~GHalaalltGg~v~----~I~l~~   73 (236)
                      .++...||.+||++|...|-+-.    +++++|
T Consensus         9 ~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp   41 (181)
T cd06158           9 LLAITLHEFAHAYVAYRLGDPTARRAGRLTLNP   41 (181)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHcCceecCc
Confidence            45778999999999999998765    355555

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1

Probab=90.34  E-value=0.17  Score=41.30  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=14.5

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 026597           42 PFKLITVFLHEASHAIA   58 (236)
Q Consensus        42 p~r~l~t~~HE~GHala   58 (236)
                      ...+..|+.||+||++-
T Consensus       101 ~~~~~~~~~HEiGHaLG  117 (156)
T cd04279         101 AENLQAIALHELGHALG  117 (156)
T ss_pred             chHHHHHHHHHhhhhhc
Confidence            35788999999999984

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=88.84  E-value=0.27  Score=39.94  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      ....|+.||+||++-
T Consensus        93 ~~~~~~~HEiGHaLG  107 (165)
T cd04268          93 RLRNTAEHELGHALG  107 (165)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            467999999999974

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site

Probab=88.40  E-value=0.36  Score=46.07  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCce
Q 026597           43 FKLITVFLHEASHAIACKLTCGDV   66 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltGg~v   66 (236)
                      .+-+.|++||+|||+=.+++..+.
T Consensus       240 ~~~v~tLfHE~GHa~H~~ls~~~~  263 (458)
T PF01432_consen  240 HDDVETLFHEFGHAMHSLLSRTKY  263 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             hhhHHHHHHHHhHHHHHHHhcccc
Confidence            456899999999999999987653

This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.

>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family

Probab=88.33  E-value=0.2  Score=41.00  Aligned_cols=17  Identities=35%  Similarity=0.471  Sum_probs=14.4

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 026597           42 PFKLITVFLHEASHAIA   58 (236)
Q Consensus        42 p~r~l~t~~HE~GHala   58 (236)
                      ......|+.||+|||+-
T Consensus       104 ~~~~~~~~~HEiGHaLG  120 (157)
T cd04278         104 GTDLFSVAAHEIGHALG  120 (157)
T ss_pred             cchHHHHHHHHhccccc
Confidence            45789999999999963

MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).

>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily

Probab=86.74  E-value=0.34  Score=40.64  Aligned_cols=14  Identities=29%  Similarity=0.468  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAIA   58 (236)
Q Consensus        45 ~l~t~~HE~GHala   58 (236)
                      ...|+.||+||++-
T Consensus       113 ~~~t~~HEiGHaLG  126 (186)
T cd04277         113 GYQTIIHEIGHALG  126 (186)
T ss_pred             hHHHHHHHHHHHhc
Confidence            57899999999985

Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.

>CHL00176 ftsH cell division protein; Validated

Probab=86.20  E-value=0.9  Score=45.96  Aligned_cols=53  Identities=19%  Similarity=0.100  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHhC--CceeeEEEeeCC--CcceEeecC------------ceeeeeccccchHH
Q 026597           46 ITVFLHEASHAIACKLTC--GDVEGMQVHANE--GGATQTRGG------------IYWLILPAGYLGSS   98 (236)
Q Consensus        46 l~t~~HE~GHalaalltG--g~v~~I~l~~d~--sG~t~s~Gg------------~~~~i~~AGY~gp~   98 (236)
                      -.+..||.|||+++.+.+  ..++.+.|.|.+  .|.|...-.            .++.++.||..+=-
T Consensus       439 ~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~  507 (638)
T CHL00176        439 RLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEE  507 (638)
T ss_pred             HHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHH
Confidence            457999999999998764  568999998884  466655421            03556666666654

>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3

Probab=85.94  E-value=0.58  Score=45.21  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           40 LTPFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        40 ~~p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      +--..-+.|++||+||++=.+++-.+
T Consensus       243 lL~~~~v~TLfHEfGHalH~~ls~~~  268 (458)
T cd06457         243 LLSPHEVETLFHEMGHAMHSMLGRTE  268 (458)
T ss_pred             CcCHHHHHHHHHHHhHHHHHHHcCCC
Confidence            44567899999999999999999655

4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo

>PRK10280 dipeptidyl carboxypeptidase II; Provisional

Probab=85.72  E-value=0.57  Score=47.72  Aligned_cols=26  Identities=15%  Similarity=0.236  Sum_probs=21.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           40 LTPFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        40 ~~p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      +--..-+.|+|||||||+=.+++--+
T Consensus       459 LL~~~eV~TlFHEfGHalH~lls~~~  484 (681)
T PRK10280        459 LLLWDDVITLFHEFGHTLHGLFARQR  484 (681)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44467899999999999999998533

>smart00235 ZnMc Zinc-dependent metalloprotease

Probab=85.70  E-value=0.39  Score=38.23  Aligned_cols=13  Identities=38%  Similarity=0.457  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHH
Q 026597           47 TVFLHEASHAIAC   59 (236)
Q Consensus        47 ~t~~HE~GHalaa   59 (236)
                      .|+.||+|||+--
T Consensus        88 ~~~~HEigHaLGl  100 (140)
T smart00235       88 GVAAHELGHALGL  100 (140)
T ss_pred             ccHHHHHHHHhcC
Confidence            4899999999843

Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.

>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3

Probab=85.28  E-value=0.49  Score=44.26  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=19.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhC
Q 026597           41 TPFKLITVFLHEASHAIACKLTC   63 (236)
Q Consensus        41 ~p~r~l~t~~HE~GHalaalltG   63 (236)
                      ..++-+.|++||+|||+=..++-
T Consensus       218 ~~~~~v~tl~HE~GHa~h~~~~~  240 (427)
T cd06459         218 GTLDDVFTLAHELGHAFHSYLSR  240 (427)
T ss_pred             CChhhHHHHHHHhhHHHHHHHHc
Confidence            35788999999999999888874

4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.

>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]

Probab=84.99  E-value=0.64  Score=47.13  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           40 LTPFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        40 ~~p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      +.-+.=+.|+||||||++=.+++--+
T Consensus       462 Lls~dEV~TLFHEfGHgLH~mlt~v~  487 (683)
T COG0339         462 LLSHDEVTTLFHEFGHGLHHLLTRVK  487 (683)
T ss_pred             eeeHHHHHHHHHHhhhHHHHHhhcCC
Confidence            34467789999999999999987544

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=84.93  E-value=1.2  Score=44.90  Aligned_cols=32  Identities=25%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHhC--CceeeEEEeeCCCc
Q 026597           46 ITVFLHEASHAIACKLTC--GDVEGMQVHANEGG   77 (236)
Q Consensus        46 l~t~~HE~GHalaalltG--g~v~~I~l~~d~sG   77 (236)
                      -.+..||.|||+++.+..  ..++.++|-|+++.
T Consensus       409 ~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~  442 (644)
T PRK10733        409 ESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRA  442 (644)
T ss_pred             HHHHHHHHHHHHHHHHccCCCceeEEEEeccCCC
Confidence            568999999999998875  66889999877643

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=83.90  E-value=0.9  Score=40.13  Aligned_cols=18  Identities=28%  Similarity=0.477  Sum_probs=15.6

Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIACKL   61 (236)
Q Consensus        44 r~l~t~~HE~GHalaall   61 (236)
                      ..+-|+.||+|||+...+
T Consensus        91 ~~~~~l~HE~GHAlI~~~  108 (220)
T PF14247_consen   91 NVLFTLYHELGHALIDDL  108 (220)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            567899999999999874

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=83.07  E-value=0.79  Score=39.16  Aligned_cols=14  Identities=43%  Similarity=0.641  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAIA   58 (236)
Q Consensus        45 ~l~t~~HE~GHala   58 (236)
                      ...|+.||+|||+-
T Consensus        92 ~~~~i~HElgHaLG  105 (198)
T cd04327          92 FSRVVLHEFGHALG  105 (198)
T ss_pred             HHHHHHHHHHHHhc
Confidence            45799999999984

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases

Probab=82.93  E-value=1.1  Score=41.33  Aligned_cols=29  Identities=24%  Similarity=0.167  Sum_probs=23.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhCCceee
Q 026597           40 LTPFKLITVFLHEASHAIACKLTCGDVEG   68 (236)
Q Consensus        40 ~~p~r~l~t~~HE~GHalaalltGg~v~~   68 (236)
                      +....-+.|++||+|||+=.+++-.+...
T Consensus       149 ll~~~~v~tl~HE~GHa~h~~l~~~~~~~  177 (365)
T cd06258         149 LLGHDDINTLFHEFGHAVHFLLIQQRYPF  177 (365)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHhcCCCCc
Confidence            34678899999999999998888655443

The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=82.90  E-value=1.7  Score=42.13  Aligned_cols=39  Identities=28%  Similarity=0.204  Sum_probs=29.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHh--CCceeeEEEeeCC--CcceEe
Q 026597           43 FKLITVFLHEASHAIACKLT--CGDVEGMQVHANE--GGATQT   81 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaallt--Gg~v~~I~l~~d~--sG~t~s   81 (236)
                      -..--+..||.|||+++.+.  +.+++++.|.|.+  .|.+..
T Consensus       309 ~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~  351 (495)
T TIGR01241       309 KEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQF  351 (495)
T ss_pred             HHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEe
Confidence            33446899999999999988  5789999998764  455533

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24

Probab=82.83  E-value=1.1  Score=43.34  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCc
Q 026597           43 FKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltGg~   65 (236)
                      ++-+.|++||+||++=.+++..+
T Consensus       261 ~~~V~TLfHEfGHalH~~ls~~~  283 (472)
T cd06455         261 HDEVETFFHEFGHVIHHLLGRTK  283 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Confidence            79999999999999999998754

15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom

>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3

Probab=82.80  E-value=1.1  Score=42.97  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=22.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCceee
Q 026597           42 PFKLITVFLHEASHAIACKLTCGDVEG   68 (236)
Q Consensus        42 p~r~l~t~~HE~GHalaalltGg~v~~   68 (236)
                      -+.-+.|++||+|||+=.+++..+...
T Consensus       205 ~~~~v~tLfHEfGHalH~~ls~~~~~~  231 (422)
T cd06456         205 THDEVTTLFHEFGHALHHLLTDVEYPS  231 (422)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            578899999999999999998644443

4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.

>cd00203 ZnMc Zinc-dependent metalloprotease

Probab=82.54  E-value=0.65  Score=37.59  Aligned_cols=17  Identities=24%  Similarity=0.264  Sum_probs=14.2

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIACK   60 (236)
Q Consensus        44 r~l~t~~HE~GHalaal   60 (236)
                      ....|+.||+||++--.
T Consensus        95 ~~~~~~~HElGH~LGl~  111 (167)
T cd00203          95 EGAQTIAHELGHALGFY  111 (167)
T ss_pred             cchhhHHHHHHHHhCCC
Confidence            67889999999998643

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.

>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C

Probab=81.73  E-value=0.7  Score=35.78  Aligned_cols=12  Identities=33%  Similarity=0.739  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHH
Q 026597           46 ITVFLHEASHAI   57 (236)
Q Consensus        46 l~t~~HE~GHal   57 (236)
                      ..|+.||+||.+
T Consensus       108 ~~~~~HEiGH~l  119 (124)
T PF13582_consen  108 VDTFAHEIGHNL  119 (124)
T ss_dssp             TTHHHHHHHHHT
T ss_pred             ceEeeehhhHhc
Confidence            489999999976

>PRK10911 oligopeptidase A; Provisional

Probab=81.38  E-value=1.2  Score=45.39  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhC
Q 026597           43 FKLITVFLHEASHAIACKLTC   63 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltG   63 (236)
                      +.-+.|++||||||+=.+++-
T Consensus       461 ~~~v~tlfHEfGHalH~~ls~  481 (680)
T PRK10911        461 HDEVITLFHEFGHGLHHMLTR  481 (680)
T ss_pred             HHHHHHHHHHHhHHHHHHHhC
Confidence            488999999999999999884

>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family

Probab=81.36  E-value=0.85  Score=45.26  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHh
Q 026597           41 TPFKLITVFLHEASHAIACKLT   62 (236)
Q Consensus        41 ~p~r~l~t~~HE~GHalaallt   62 (236)
                      ..++-+.|++||+|||+=..++
T Consensus       371 ~~~~~v~TL~HE~GHa~H~~ls  392 (587)
T TIGR02290       371 GSRRDVSTLAHELGHAYHSELA  392 (587)
T ss_pred             CCchhHHHHHHHhhHHHHHHHH
Confidence            3478899999999999988877

The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	97.3
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	95.23
2jsd_A	160	Matrix metalloproteinase-20; MMP-NNGH, structural	88.95
2xs4_A	167	Karilysin protease; hydrolase, bacterial MMP, viru	88.42
2ovx_A	159	Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9)	87.57
1hy7_A	173	Stromelysin-1, MMP-3; mixed alpha beta structure,	87.49
1cge_A	168	Fibroblast collagenase; hydrolase (metalloprotease	86.5
1hv5_A	165	Stromelysin 3; inhibition, phosphinic inhibitor, h	84.51
1i76_A	163	MMP-8;, neutrophil collagenase; hydrolase, complex	84.23
2o36_A	674	ThiMet oligopeptidase; thermolysin-like domain, su	83.73
2o3e_A	678	Neurolysin; thermolysin-like domain, substrate-bin	83.73
1y79_1	680	Peptidyl-dipeptidase DCP; hinge bending, carboxype	83.06
3ahn_A	564	Oligopeptidase, PZ peptidase A; hydrolase, hydrola	82.07
3sks_A	567	Putative oligoendopeptidase F; structural genomics	81.54
1slm_A	255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	81.51

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=97.30  E-value=0.00012  Score=63.03  Aligned_cols=65  Identities=26%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCceeeEEEeeCCCcceEeecCc---eeeeeccccchHHHHHHHHHHHh
Q 026597           43 FKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGI---YWLILPAGYLGSSFWGMALVLAS  108 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltGg~v~~I~l~~d~sG~t~s~Gg~---~~~i~~AGY~gp~l~G~~l~~~~  108 (236)
                      .-.+...+||+||+++|...|.+++++++.|= +|.+.....+   +..++.||.....+.+.......
T Consensus        46 ~l~~~v~~HElgH~~~A~~~G~~~~~i~l~p~-Gg~~~~~~~~~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           46 LLFVSVVLHELGHSYVAKKYGVKIEKILLLPI-GGVAMMDKIPKEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCEEECSS-SCBCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccccEEEEEe-eeEEEcccCCccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999984 4666554322   58899999999998887665554

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=95.23  E-value=0.0085  Score=52.10  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHhC--CceeeEEEeeCC
Q 026597           46 ITVFLHEASHAIACKLTC--GDVEGMQVHANE   75 (236)
Q Consensus        46 l~t~~HE~GHalaalltG--g~v~~I~l~~d~   75 (236)
                      -.|..||.|||++|.+..  ..|++++|-|++
T Consensus        17 ~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG   48 (238)
T 2di4_A           17 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRG   48 (238)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCCCCEECC---
T ss_pred             HHHHHHHHHHHHHHHHcCCCCceeEEEEeecC
Confidence            457899999999999998  789999999985

>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}

Probab=88.95  E-value=0.18  Score=40.22  Aligned_cols=15  Identities=47%  Similarity=0.614  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      ....|+.||+|||+-
T Consensus       107 ~~~~v~~HEiGHaLG  121 (160)
T 2jsd_A          107 NLFTVAAHEFGHALG  121 (160)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhHhhhc
Confidence            468999999999973

>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A

Probab=88.42  E-value=0.2  Score=40.35  Aligned_cols=15  Identities=47%  Similarity=0.627  Sum_probs=13.0

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      .+..|+.||+||++-
T Consensus       114 ~~~~v~~HEiGHaLG  128 (167)
T 2xs4_A          114 DLITVAAHEIGHLLG  128 (167)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHhhc
Confidence            577999999999973

>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*

Probab=87.57  E-value=0.2  Score=40.24  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=12.4

Q ss_pred             hHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAI   57 (236)
Q Consensus        44 r~l~t~~HE~GHal   57 (236)
                      .+..|+.||+||++
T Consensus       110 ~~~~va~HEiGHaL  123 (159)
T 2ovx_A          110 SLFLVAAHQFGHAL  123 (159)
T ss_dssp             EHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhhhhh
Confidence            46789999999997

>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...

Probab=87.49  E-value=0.24  Score=40.15  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      .+..|+.||+||++-
T Consensus       112 ~~~~v~~HEiGHaLG  126 (173)
T 1hy7_A          112 NLFLVAAHEIGHSLG  126 (173)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHhhc
Confidence            468999999999973

>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A

Probab=86.50  E-value=0.25  Score=39.99  Aligned_cols=15  Identities=33%  Similarity=0.479  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      .+..|+.||+||++-
T Consensus       110 ~~~~v~~HEiGHaLG  124 (168)
T 1cge_A          110 NLHRVAAHELGHSLG  124 (168)
T ss_dssp             BHHHHHHHHHHHHTT
T ss_pred             chhhhhhhHhHhhhc
Confidence            468999999999973

>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11

Probab=84.51  E-value=0.35  Score=38.89  Aligned_cols=16  Identities=31%  Similarity=0.461  Sum_probs=13.2

Q ss_pred             hhHHHHHHHHHHHHHH
Q 026597           43 FKLITVFLHEASHAIA   58 (236)
Q Consensus        43 ~r~l~t~~HE~GHala   58 (236)
                      .....|+.||+||++-
T Consensus       111 ~~~~~v~~HEiGHaLG  126 (165)
T 1hv5_A          111 TDLLQVAAHEFGHVLG  126 (165)
T ss_dssp             EEHHHHHHHHHHHHTT
T ss_pred             chhhhhHHHHhHhhhC
Confidence            3568999999999973

>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...

Probab=84.23  E-value=0.45  Score=38.28  Aligned_cols=16  Identities=31%  Similarity=0.575  Sum_probs=13.3

Q ss_pred             hhHHHHHHHHHHHHHH
Q 026597           43 FKLITVFLHEASHAIA   58 (236)
Q Consensus        43 ~r~l~t~~HE~GHala   58 (236)
                      ..+..|..||+||++-
T Consensus       110 ~~~~~v~~HE~GHalG  125 (163)
T 1i76_A          110 YNLFLVAAHEFGHSLG  125 (163)
T ss_dssp             CBHHHHHHHHHHHHHT
T ss_pred             chhhhhhHHHhhhhhc
Confidence            3568999999999973

>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P

Probab=83.73  E-value=0.63  Score=45.58  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           42 PFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        42 p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      -++-+.|++||+|||+=.+++..+
T Consensus       449 t~~dV~TLfHE~GHalH~~ls~~~  472 (674)
T 2o36_A          449 QHDEVRTYFHEFGHVMHQLCSQAE  472 (674)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCC
Confidence            568899999999999999988643

>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P

Probab=83.73  E-value=0.57  Score=45.87  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=20.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           42 PFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        42 p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      -++-+.|++||+|||+=.+++-.+
T Consensus       465 t~~dV~TLfHE~GHalH~~ls~~~  488 (678)
T 2o3e_A          465 RHDEVETYFHEFGHVMHQICAQTD  488 (678)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCBS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCC
Confidence            567899999999999999988543

>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli}

Probab=83.06  E-value=0.59  Score=45.91  Aligned_cols=24  Identities=13%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           42 PFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        42 p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      -++-+.|++||+|||+=.+++-.+
T Consensus       460 t~~dV~TLfHE~GHalH~~ls~~~  483 (680)
T 1y79_1          460 LWDDVITLFHEFGHTLHGLFARQR  483 (680)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCC
Confidence            577899999999999999988543

>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A

Probab=82.07  E-value=0.73  Score=43.78  Aligned_cols=22  Identities=32%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhC
Q 026597           42 PFKLITVFLHEASHAIACKLTC   63 (236)
Q Consensus        42 p~r~l~t~~HE~GHalaalltG   63 (236)
                      -++-+.|++||+|||+=.+++-
T Consensus       347 t~~dv~TL~HE~GHa~H~~ls~  368 (564)
T 3ahn_A          347 TSGDIDVLTHEAGHAFQVYESR  368 (564)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccchhhHHHHhCHHHHHHHhc
Confidence            4677899999999999998875

>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis}

Probab=81.54  E-value=0.85  Score=43.72  Aligned_cols=24  Identities=29%  Similarity=0.151  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCc
Q 026597           42 PFKLITVFLHEASHAIACKLTCGD   65 (236)
Q Consensus        42 p~r~l~t~~HE~GHalaalltGg~   65 (236)
                      -++-+.|++||+|||+=.+++..+
T Consensus       350 t~~dV~TL~HE~GHalH~~ls~~~  373 (567)
T 3sks_A          350 TSGDIDVLTHEAGHAFQVYESRKF  373 (567)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CcchHHHHHHHccHHHHHHHHccC
Confidence            467899999999999999998643

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11

Probab=81.51  E-value=0.52  Score=40.91  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      .+..|+.||+||++-
T Consensus       194 ~l~~va~HEiGHaLG  208 (255)
T 1slm_A          194 NLFLVAAHEIGHSLG  208 (255)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             eehhhhHHHHHHHhc
Confidence            468999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	96.1
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	95.87
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	91.46
d1y93a1	158	Macrophage elastase (MMP-12) {Human (Homo sapiens)	90.86
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	90.63
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	90.58
d1hy7a_	168	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	90.56
d1xuca1	169	Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI	90.48
d2ovxa1	159	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	90.06
d1i76a_	163	Neutrophil collagenase (MMP-8) {Human (Homo sapien	90.06
d1hv5a_	162	Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI	89.79
d1qiba_	161	Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}	89.52
d1bqqm_	174	Membrane-type matrix metalloproteinase (CDMT1-MMP)	86.1
d1g9ka2	242	Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId	85.92
d1s4bp_	654	Neurolysin (endopeptidase 24.16, thimet oligopepti	85.52
d1k7ia2	241	Metalloprotease {Erwinia chrysanthemi [TaxId: 556]	85.51
d1sata2	243	Metalloprotease {Serratia marcescens [TaxId: 615]}	85.4
d1kapp2	246	Metalloprotease {Pseudomonas aeruginosa [TaxId: 28	84.5
d1i1ip_	665	Neurolysin (endopeptidase 24.16, thimet oligopepti	83.57

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0013  Score=52.55  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHh--CCceeeEEEeeCCC
Q 026597           47 TVFLHEASHAIACKLT--CGDVEGMQVHANEG   76 (236)
Q Consensus        47 ~t~~HE~GHalaallt--Gg~v~~I~l~~d~s   76 (236)
                      -+..||.|||+++.+.  +.+++++.|.|++.
T Consensus         9 ~vA~HEAGHAlva~~l~~~~~i~~vsI~~r~~   40 (193)
T d2ce7a1           9 IIAYHEAGHAVVSTVVPNGEPVHRISIIPRGY   40 (193)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCCCEEECC----
T ss_pred             HHHHHHHHHHHHHHHcCCCCceeEEEEecCcc
Confidence            4778999999999998  55699999998753

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.87  E-value=0.0018  Score=52.03  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHhCC--ceeeEEEeeCCCcceE
Q 026597           47 TVFLHEASHAIACKLTCG--DVEGMQVHANEGGATQ   80 (236)
Q Consensus        47 ~t~~HE~GHalaalltGg--~v~~I~l~~d~sG~t~   80 (236)
                      -+..||.|||+++.+++.  ++..+.|.|++.+...
T Consensus         9 ~vA~HEAGHAvva~~l~~~~~v~~vtI~prg~~~g~   44 (202)
T d2di4a1           9 KIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGV   44 (202)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCCCCEECC--------
T ss_pred             HHHHHHHHHHHHHHHcCCCCceeEEEEecCCccccc
Confidence            468999999999999874  6899999887655443

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.038  Score=41.29  Aligned_cols=17  Identities=35%  Similarity=0.450  Sum_probs=14.1

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 026597           42 PFKLITVFLHEASHAIA   58 (236)
Q Consensus        42 p~r~l~t~~HE~GHala   58 (236)
                      +..+..|+.||+|||+-
T Consensus       114 ~~~~~~v~~HEiGHaLG  130 (169)
T d1rm8a_         114 GNDLFLVAVHELGHALG  130 (169)
T ss_dssp             SEEHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhhhhhhc
Confidence            34578899999999985

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.039  Score=41.13  Aligned_cols=15  Identities=27%  Similarity=0.525  Sum_probs=13.0

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      ....|+.||+|||+-
T Consensus       106 ~~~~~~~HEiGHaLG  120 (158)
T d1y93a1         106 NLFLTAVHEIGHSLG  120 (158)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             cHHHHhhhhhhhhcC
Confidence            468999999999974

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.042  Score=40.87  Aligned_cols=16  Identities=31%  Similarity=0.555  Sum_probs=12.4

Q ss_pred             hhHHHHHHHHHHHHHH
Q 026597           43 FKLITVFLHEASHAIA   58 (236)
Q Consensus        43 ~r~l~t~~HE~GHala   58 (236)
                      -....|+.||+|||+-
T Consensus       104 ~~~~~v~~HEiGHaLG  119 (157)
T d1hfca_         104 YNLHRVAAHELGHSLG  119 (157)
T ss_dssp             CBHHHHHHHHHHHHHT
T ss_pred             chhhhhHhhhhhhhcc
Confidence            3446799999999973

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.052  Score=41.21  Aligned_cols=15  Identities=20%  Similarity=0.432  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAIA   58 (236)
Q Consensus        44 r~l~t~~HE~GHala   58 (236)
                      ....|+.||+|||+-
T Consensus       113 ~~~~v~~HEiGHaLG  127 (166)
T d1mmqa_         113 NFLYAATHELGHSLG  127 (166)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhccccC
Confidence            456799999999985

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=90.56  E-value=0.052  Score=40.79  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=18.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCceeeEEEeeCCCcceE
Q 026597           43 FKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ   80 (236)
Q Consensus        43 ~r~l~t~~HE~GHalaalltGg~v~~I~l~~d~sG~t~   80 (236)
                      .....|+.||+|||+          ++. |++..+..+
T Consensus       111 ~~~~~v~~HEiGHAL----------GL~-H~~~~~svM  137 (168)
T d1hy7a_         111 TNLFLVAAHEIGHSL----------GLF-HSANTEALM  137 (168)
T ss_dssp             EEHHHHHHHHHHHHH----------TBC-CCSCTTSTT
T ss_pred             ccceeeeHhhhcccc----------CCC-cCCCCCcee
Confidence            345789999999999          444 566555544

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.053  Score=40.94  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=14.2

Q ss_pred             chhhHHHHHHHHHHHHHH
Q 026597           41 TPFKLITVFLHEASHAIA   58 (236)
Q Consensus        41 ~p~r~l~t~~HE~GHala   58 (236)
                      .......|+.||+|||+-
T Consensus       109 ~~~~~~~v~~HEiGHaLG  126 (169)
T d1xuca1         109 KGYNLFLVAAHEFGHSLG  126 (169)
T ss_dssp             SSEEHHHHHHHHHHHHHT
T ss_pred             CCceeeeehhhhhccccC
Confidence            334567899999999984

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.05  Score=40.68  Aligned_cols=13  Identities=38%  Similarity=0.529  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAI   57 (236)
Q Consensus        45 ~l~t~~HE~GHal   57 (236)
                      +..|+.||+|||+
T Consensus       111 ~~~v~~HElGHaL  123 (159)
T d2ovxa1         111 LFLVAAHQFGHAL  123 (159)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             eeeeehhhhcccc
Confidence            4569999999997

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.061  Score=40.58  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=14.3

Q ss_pred             chhhHHHHHHHHHHHHHH
Q 026597           41 TPFKLITVFLHEASHAIA   58 (236)
Q Consensus        41 ~p~r~l~t~~HE~GHala   58 (236)
                      .+.....|+.||+|||+-
T Consensus       108 ~~~~~~~v~~HEiGHaLG  125 (163)
T d1i76a_         108 ANYNLFLVAAHEFGHSLG  125 (163)
T ss_dssp             SSCBHHHHHHHHHHHHHT
T ss_pred             ccchheeehhhhhhhhhc
Confidence            344567899999999985

>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-3 (MMP-11)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.79  E-value=0.054  Score=41.21  Aligned_cols=14  Identities=36%  Similarity=0.567  Sum_probs=12.1

Q ss_pred             hHHHHHHHHHHHHH
Q 026597           44 KLITVFLHEASHAI   57 (236)
Q Consensus        44 r~l~t~~HE~GHal   57 (236)
                      ....|+.||+|||+
T Consensus       112 ~~~~v~~HEiGHaL  125 (162)
T d1hv5a_         112 DLLQVAAHEFGHVL  125 (162)
T ss_dssp             EHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhhhhc
Confidence            45789999999997

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.072  Score=39.61  Aligned_cols=17  Identities=35%  Similarity=0.516  Sum_probs=13.6

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 026597           42 PFKLITVFLHEASHAIA   58 (236)
Q Consensus        42 p~r~l~t~~HE~GHala   58 (236)
                      +.....|+.||+||++-
T Consensus       106 ~~~~~~~~~HEiGHaLG  122 (161)
T d1qiba_         106 GYSLFLVAAHEFGHAMG  122 (161)
T ss_dssp             SEEHHHHHHHHHHHHHT
T ss_pred             cchhheeeeeccccccc
Confidence            34567799999999984

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=0.1  Score=38.58  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=13.7

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 026597           42 PFKLITVFLHEASHAIA   58 (236)
Q Consensus        42 p~r~l~t~~HE~GHala   58 (236)
                      +..+..|+.||+||++-
T Consensus       117 ~~~~~~v~~HEiGHaLG  133 (174)
T d1bqqm_         117 GNDIFLVAVHELGHALG  133 (174)
T ss_dssp             SCBHHHHHHHHHHHTTT
T ss_pred             chhhhhhhhcccccccC
Confidence            34567999999999973

>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas sp., tac ii 18 [TaxId: 306]

Probab=85.92  E-value=0.13  Score=41.72  Aligned_cols=13  Identities=23%  Similarity=0.322  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAI   57 (236)
Q Consensus        45 ~l~t~~HE~GHal   57 (236)
                      ..-|+.||+|||+
T Consensus       161 ~~~t~~HEIGHaL  173 (242)
T d1g9ka2         161 GRQTLTHEIGHTL  173 (242)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhh
Confidence            4569999999998

>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.52  E-value=0.17  Score=47.24  Aligned_cols=27  Identities=15%  Similarity=0.274  Sum_probs=22.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhCCce
Q 026597           40 LTPFKLITVFLHEASHAIACKLTCGDV   66 (236)
Q Consensus        40 ~~p~r~l~t~~HE~GHalaalltGg~v   66 (236)
                      +--+.-+.|++|||||++=.+++=-+.
T Consensus       439 lLs~~ev~TlFHEfGHalH~ll~~~~y  465 (654)
T d1s4bp_         439 LLQHDEVETYFHEFGHVMHQLCSQAEF  465 (654)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             eecHHHhhhHHHHHHHHHHHHhccccc
Confidence            344577999999999999999976654

>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Erwinia chrysanthemi [TaxId: 556]

Probab=85.51  E-value=0.14  Score=41.72  Aligned_cols=13  Identities=38%  Similarity=0.621  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHH
Q 026597           46 ITVFLHEASHAIA   58 (236)
Q Consensus        46 l~t~~HE~GHala   58 (236)
                      ..|+.||+|||+-
T Consensus       166 ~~t~~HEIGHaLG  178 (241)
T d1k7ia2         166 RQTFTHEIGHALG  178 (241)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            4689999999973

>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Serratia marcescens [TaxId: 615]

Probab=85.40  E-value=0.14  Score=41.72  Aligned_cols=14  Identities=36%  Similarity=0.472  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAIA   58 (236)
Q Consensus        45 ~l~t~~HE~GHala   58 (236)
                      ..-|+.||+|||+-
T Consensus       167 ~~~t~lHEIGHaLG  180 (243)
T d1sata2         167 GRQTFTHEIGHALG  180 (243)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            35688999999973

>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.50  E-value=0.16  Score=41.33  Aligned_cols=14  Identities=21%  Similarity=0.311  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHH
Q 026597           45 LITVFLHEASHAIA   58 (236)
Q Consensus        45 ~l~t~~HE~GHala   58 (236)
                      ..-|+.||+||++-
T Consensus       170 ~~~t~lHEIGHaLG  183 (246)
T d1kapp2         170 GRQTLTHEIGHTLG  183 (246)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhC
Confidence            34589999999973

>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.57  E-value=0.27  Score=45.90  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhCCce
Q 026597           40 LTPFKLITVFLHEASHAIACKLTCGDV   66 (236)
Q Consensus        40 ~~p~r~l~t~~HE~GHalaalltGg~v   66 (236)
                      +--+.-+.|++|||||++=.+++--+.
T Consensus       450 lls~~ev~TLFHEfGHalH~lls~~~y  476 (665)
T d1i1ip_         450 LLRHDEVRTYFHEFGHVMHQICAQTDF  476 (665)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             ccchhhHhhhHHHHHHHHHHhhccccc
Confidence            344788999999999999999985554