Citrus Sinensis ID: 026607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MYKKNISPSELALLESISQYLLDDDATSFQIPISSPSETTINSNETLSFTENSDVSNDMETYRALHDAINVGWISFDQIDDETDGTSTSTTKSTPDRTEVARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKRRNYGISFCTSDVNWENVQ
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHccccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEHcccccHcccccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccHHccccccccccccHHHccccccHccccccccccccccccccccccccccHHccccccccccccccccc
Coil and Loop (DISEMBL)
mykknispsELALLESISQYlldddatsfqipisspsettinsnetlsftensdvsndmETYRALHDAINvgwisfdqiddetdgtststtkstpdrteVARDTLVGaryrgvrrrpwgkfvaeirdpkkngtriwlgtyntpedaALAYDRAAFnmrgskaklnfphligsnvepvplgrvtkkraspepsspsssssssssssftvlsydspkpkrrnygisfctsdvnwenvq
Flexible Loop (DISEMBL)
MYKKNISPSELALLESISQYLLDDDATSFqipisspsettinsnetlSFTENSDVSNDMETYRALHDAINVGWISfdqiddetdgtststtkstpdrtevardtlvgaryrgvrrrpwgkfvaeirdpkkngtriwlgTYNTPEDAALAYDRAAFNMRGSKAKLnfphligsnvepvplGRVTKKRaspepsspsssssssssssftvlsydspkpkrrnygisfctsdvnwenvq
Low Complexity Region (SEG)
MYKKNISPSELALLESISQYLLDDDATSFQIPISSPSETTINSNETLSFTENSDVSNDMETYRALHDAINVGWISFDQIddetdgtststtkstpdrtEVARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPLGRVTKKRAspepsspsssssssssssFTVLSYDSPKPKRRNYGISFCTSDVNWENVQ
Disordered region (IsUnstruct)
***************SISQYLLD*************************************TYRALHDAINVGWISFDQI***********************DTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGSN***********************************************YGISFCTSDVN*****
Disordered Region (DISOPRED)
******S*SELALLESISQYLLDDDATSFQIPI**********************SNDMETYRALHD*********************************************VRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI*************************************************************WENV*
Disordered Region (DISEMBL)
********SELALLESISQYLLDDDATSFQIPISSPSETTINSNETLSFTENSDVSNDMETYRALHDAINVGWISFDQIDDE****************EVARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPLGR********************************PKPKRRNYGISFCTSDVNWENVQ
Disordered Region (DISPRO)
****NISPSELALLESISQYLLDDD***********SETTINSNETLSFTENSDVSNDMETYRALHDAINVGWI*********************************ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGS****************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKKNISPSELALLESISQYLLDDDATSFQIPISSPSETTINSNETLSFTENSDVSNDMETYRALHDAINVGWISFDQIDDETDGTSTSTTKSTPDRTEVARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKRRNYGISFCTSDVNWENVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q8L9K1	226	Ethylene-responsive trans	yes	no	0.559	0.584	0.567	2e-36
Q40476	236	Ethylene-responsive trans	N/A	no	0.614	0.614	0.543	1e-35
Q40479	233	Ethylene-responsive trans	N/A	no	0.669	0.678	0.480	2e-35
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.572	0.569	0.530	2e-33
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.542	0.524	0.521	4e-30
O80338	243	Ethylene-responsive trans	no	no	0.771	0.748	0.425	8e-30
O80337	268	Ethylene-responsive trans	no	no	0.724	0.638	0.410	1e-27
O04681	161	Pathogenesis-related gene	N/A	no	0.275	0.403	0.692	6e-23
Q9SIE4	261	Ethylene-responsive trans	no	no	0.461	0.417	0.473	5e-22
Q9LTC5	139	Ethylene-responsive trans	no	no	0.258	0.438	0.737	9e-22

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 93/141 (65%), Gaps = 9/141 (6%)

Query: 54  DVSNDMETYRALHDAINVGWI-SFDQIDDETDGTSTSTTKSTPDRTEVARDTLVGARYRG 112
           D S DM  Y  L DA++ GW  S   +    +      TK++       +    G +YRG
Sbjct: 39  DDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQK----GMQYRG 94

Query: 113 VRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGS 172
           VRRRPWGKF AEIRDPKKNG R+WLGTY TPEDAA+AYDRAAF +RGSKAKLNFPHLIGS
Sbjct: 95  VRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

Query: 173 -NVEPVPLGRVTKKRASPEPS 192
              EPV   R+  +R SPEPS
Sbjct: 155 CKYEPV---RIRPRRRSPEPS 172

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 97/149 (65%), Gaps = 4/149 (2%)

Query: 54  DVSNDMETYRALHDAINVGW--ISFDQIDDETDGTSTSTTKSTPDRTEVARDTL-VGARY 110
           D S DM  Y  L DA+NVGW   +F   + +++        S  + T      L  G  Y
Sbjct: 46  DDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHY 105

Query: 111 RGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI 170
           RGVRRRPWGKF AEIRDP KNG R+WLGTY T E+AA+AYD+AA+ MRGSKA LNFPH I
Sbjct: 106 RGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRI 165

Query: 171 GSNVEPVPLGRVTKKRASPEPSSPSSSSS 199
           G N EP P+    K+RASPEP+S S +SS
Sbjct: 166 GLN-EPEPVRVTAKRRASPEPASSSENSS 193

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 105/181 (58%), Gaps = 23/181 (12%)

Query: 54  DVSNDMETYRALHDAINVGWISFDQIDDETDG---------TSTSTTKSTPDRTEVARDT 104
           D S DM  Y  L DA+  GW  F+    E            T    + + P  T  A+  
Sbjct: 33  DDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETTTAQAV 92

Query: 105 L-VGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAK 163
           +  G  YRGVR+RPWGKF AEIRDP KNG R+WLGTY T E+AALAYD+AA+ MRGSKA 
Sbjct: 93  VPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKAL 152

Query: 164 LNFPHLIGSNVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKRRNYGI 223
           LNFPH IG N EP P+ R+T KR SPEP+S S SS+  + S           PKRR   +
Sbjct: 153 LNFPHRIGLN-EPEPV-RLTAKRRSPEPASSSISSALENGS-----------PKRRRKAV 199

Query: 224 S 224
           +
Sbjct: 200 A 200

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 91/147 (61%), Gaps = 12/147 (8%)

Query: 54  DVSNDMETYRALHDAINVGWISFDQIDDETDG---------TSTSTTKSTPDRTEVARDT 104
           D S DM  Y  L DA+  GW  F+    E            TS   + + P  T  A+  
Sbjct: 37  DDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAV 96

Query: 105 L-VGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAK 163
           +  G  YRGVR+RPWGKF AEIRDP KNG R+WLGTY T E+AALAYD+AA+ MRGSKA 
Sbjct: 97  VPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKAL 156

Query: 164 LNFPHLIGSNVEPVPLGRVTKKRASPE 190
           LNFPH IG N EP P+ R+T KR SPE
Sbjct: 157 LNFPHRIGLN-EPEPV-RLTVKRRSPE 181

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 85/138 (61%), Gaps = 10/138 (7%)

Query: 56  SNDMETYRALHDAINVGWISFDQIDDETD-------GTSTSTTKSTPDRTEVARDTLVGA 108
           S DM  Y  L DA ++GW   +   +E           + ST+ S P     A     G 
Sbjct: 47  SEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQP-KGR 105

Query: 109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPH 168
            YRGVR+RPWGKF AEIRDP KNG R+WLGTY + E+AALAY +AAF MRG+KA LNFPH
Sbjct: 106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPH 165

Query: 169 LIGSNVEPVPLGRVTKKR 186
            IG N EP P+ RVT KR
Sbjct: 166 RIGLN-EPEPV-RVTVKR 181

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 103/195 (52%), Gaps = 13/195 (6%)

Query: 1   MYKKNISPSELALLESISQYLLDDDA-TSFQIPISSPSETTINSNETLSFTENSDVSNDM 59
           MY +    S+ ALLESI+++LL        ++  S+PS     S   L   EN   S DM
Sbjct: 1   MYGQCNIESDYALLESITRHLLGGGGENELRLNESTPSSCFTESWGGLPLKEND--SEDM 58

Query: 60  ETYRALHDAINV--------GWISFDQIDDETDGTSTSTTKSTPDRTEVARDTLVGARYR 111
             Y  L DA +             F  +  E     T+  +       V    +    YR
Sbjct: 59  LVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYR 118

Query: 112 GVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIG 171
           GVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYD AAF MRGS+A LNFP  + 
Sbjct: 119 GVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVN 178

Query: 172 SNVEPVPLGRVTKKR 186
           S  EP P+ R+T KR
Sbjct: 179 SG-EPDPV-RITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 111/212 (52%), Gaps = 41/212 (19%)

Query: 7   SPSELALLESISQYLLDD------DATSFQIPISSPSETTI----NSNETLS-----FTE 51
           S S+ A LESI ++LL +      ++T+  +  S  +  +I      N + S     FTE
Sbjct: 7   SQSDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTE 66

Query: 52  N-------SDVSNDMETYRALHDAINVGW-----------ISFDQIDDETDGTSTSTTKS 93
           +        + S DM  Y  L+DA + GW            SF  +  ET   S +   S
Sbjct: 67  SWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETP-ESFAAVDS 125

Query: 94  TPDRTE------VARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAA 147
            P + E       A     G  YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAA
Sbjct: 126 VPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAA 185

Query: 148 LAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPL 179
           LAYDRAAF MRGS+A LNFP  + S  EP P+
Sbjct: 186 LAYDRAAFRMRGSRALLNFPLRVNSG-EPDPV 216

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 54/65 (83%)

Query: 106 VGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLN 165
           +G +YRGVRRRPWGK+ AEIRD  ++G R+WLGT+ T E+AALAYDRAAF MRG+KA LN
Sbjct: 55  IGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLN 114

Query: 166 FPHLI 170
           FP  I
Sbjct: 115 FPSEI 119

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 5/114 (4%)

Query: 78  QIDDETDGTSTSTTKSTPDRTEVARDTLVGAR----YRGVRRRPWGKFVAEIRDPKKNGT 133
           QI ++ +   ++ +  +P+R  +   T   ++    YRGVR+R WGK+VAEIR PK N T
Sbjct: 35  QIQNQLNHRRSTISNLSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPK-NRT 93

Query: 134 RIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPLGRVTKKRA 187
           R+WLGT+ T E AALAYD+AAF +RG  AKLNFP+LI  ++ P+P    TK +A
Sbjct: 94  RLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHEDMNPLPSSVDTKLQA 147

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 52/61 (85%)

Query: 108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
           AR+RGVRRRPWGKF AEIRDP +NG R+WLGT+ T E+AA AYDRAAFN+RG  A LNFP
Sbjct: 18  ARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77

Query: 168 H 168
           +
Sbjct: 78  N 78

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
300079020	248	ethylene response factor 12 [Actinidia d	0.652	0.620	0.486	4e-35
255541050	225	Ethylene-responsive transcription factor	0.843	0.884	0.449	4e-35
255541048	221	Ethylene-responsive transcription factor	0.800	0.855	0.424	7e-35
15225361	226	ethylene-responsive transcription factor	0.559	0.584	0.567	9e-35
356540552	240	PREDICTED: ethylene-responsive transcrip	0.834	0.820	0.439	9e-35
292668939	278	AP2 domain class transcription factor [M	0.881	0.748	0.465	2e-34
224137170	227	AP2/ERF domain-containing transcription	0.868	0.903	0.468	2e-34
21594007	226	putative ethylene response element bindi	0.559	0.584	0.560	5e-34
297824519	240	hypothetical protein ARALYDRAFT_903921 [	0.567	0.558	0.562	6e-34
57012756	236	RecName: Full=Ethylene-responsive transc	0.614	0.614	0.543	6e-34

>gi|300079020|gb|ADJ67441.1| ethylene response factor 12 [Actinidia deliciosa]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 109/185 (58%), Gaps = 31/185 (16%)

Query: 54  DVSNDMETYRALHDAINVGWISF---------DQIDDETDGTSTSTTK-----STPDRTE 99
           D S DM  Y  L DA++ GW  F         + ID+    T+TS  +      T  +T 
Sbjct: 47  DDSEDMVIYGLLRDAVSAGWTPFNLTANDVKPEPIDEFEPATTTSAAQLVESPVTEVQTI 106

Query: 100 VARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRG 159
            A     G  +RGVR+RPWGKF AEIRDP KNG R+WLGTY T E+AA+AYD+AA+ MRG
Sbjct: 107 AAAARPKGRHFRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAAVAYDKAAYRMRG 166

Query: 160 SKAKLNFPHLIGSNVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKRR 219
           S+A LNFPH IGS+ EP P+ RVT KR SPEP+SPSS S S               PKRR
Sbjct: 167 SRALLNFPHRIGSD-EPEPV-RVTSKRRSPEPTSPSSESGS---------------PKRR 209

Query: 220 NYGIS 224
             G +
Sbjct: 210 RKGFA 214

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541050|ref|XP_002511589.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548769|gb|EEF50258.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 130/229 (56%), Gaps = 30/229 (13%)

Query: 1   MYKKN--ISPSELALLESISQYLLDDDATSF-QIPI----SSPSETTINSNETLSFTENS 53
           M+  N  ++  +LA L+SI QYLL+DD  +  ++ +    SS S  +I +   L F  ++
Sbjct: 1   MFGANSSLAGDDLAFLDSIRQYLLEDDFETLPKVNLFDCSSSTSLPSIGACNGLPFKLDN 60

Query: 54  DVSNDMETYRALHDAINVGWISFDQIDDETDGTS-------TSTTKSTPDRTEVARDTL- 105
            +  D E                 Q D E + T+       + + K+     EVA     
Sbjct: 61  LLDIDEENIET----------PLSQFDSEVEKTTVPAATIISESQKAVTSEEEVAMALKE 110

Query: 106 ----VGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSK 161
                G +YRGVRRRPWGK+ AEIRDPKKNG RIWLGTY  PEDAALAYDRAAF MRG++
Sbjct: 111 NTPSKGCQYRGVRRRPWGKYAAEIRDPKKNGARIWLGTYEKPEDAALAYDRAAFKMRGAR 170

Query: 162 AKLNFPHLIGSN-VEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVL 209
           AKLNFPHLIGS+  EP+  G   +KR SPE SS SSSSS    S   VL
Sbjct: 171 AKLNFPHLIGSDEYEPIRAGNNKRKRCSPERSSSSSSSSCLHQSLMIVL 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541048|ref|XP_002511588.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548768|gb|EEF50257.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  152 bits (385), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/231 (42%), Positives = 127/231 (54%), Gaps = 42/231 (18%)

Query: 10  ELALLESISQYLLDDDATSFQIPISSPSETTINSNETLSFTENSDVSNDMETYRALHDAI 69
           E  L +SI QYLL+D    FQ   S P   +   N +L+    +D S D++    + D I
Sbjct: 11  EFPLFDSIQQYLLEDH--EFQTLTSVPPFNSFQENSSLTSLLLTDPSFDVDD---IDDRI 65

Query: 70  NVGWISFDQID------DETDGTSTSTTKSTPDRTEVARDTLV----------------G 107
           +  + S D +D      D+ D T  +     PD      +  V                G
Sbjct: 66  SCSFSSTDLLDEWINSSDQLDST-VNIKAEIPDEVASTLEDAVTSPNAETAGKKNAPSKG 124

Query: 108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
            +YRGVRRRPWGK+ AEIRDPKKNG R+WLGTY TPEDAALAYD+AAF MRG KAKLNFP
Sbjct: 125 WQYRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETPEDAALAYDQAAFKMRGCKAKLNFP 184

Query: 168 HLIGSNVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKR 218
           HLIGSN    P+ RV+ KR S +P++              ++++DSPK +R
Sbjct: 185 HLIGSNDYQPPV-RVSPKRRSLDPTT-------------LLINHDSPKRRR 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225361|ref|NP_182011.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana] gi|57012834|sp|Q8L9K1.2|ERF99_ARATH RecName: Full=Ethylene-responsive transcription factor 13; Short=AtERF13; AltName: Full=Ethylene-responsive element-binding factor 13; Short=EREBP-13 gi|13272437|gb|AAK17157.1|AF325089_1 putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|13899091|gb|AAK48967.1|AF370540_1 putative ethylene response element binding protein; EREBP [Arabidopsis thaliana] gi|2344900|gb|AAC31840.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|18377440|gb|AAL66886.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|330255379|gb|AEC10473.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana]

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 93/141 (65%), Gaps = 9/141 (6%)

Query: 54  DVSNDMETYRALHDAINVGWI-SFDQIDDETDGTSTSTTKSTPDRTEVARDTLVGARYRG 112
           D S DM  Y  L DA++ GW  S   +    +      TK++       +    G +YRG
Sbjct: 39  DDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQK----GMQYRG 94

Query: 113 VRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGS 172
           VRRRPWGKF AEIRDPKKNG R+WLGTY TPEDAA+AYDRAAF +RGSKAKLNFPHLIGS
Sbjct: 95  VRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

Query: 173 -NVEPVPLGRVTKKRASPEPS 192
              EPV   R+  +R SPEPS
Sbjct: 155 CKYEPV---RIRPRRRSPEPS 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540552|ref|XP_003538752.1| PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max]

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 123/232 (53%), Gaps = 35/232 (15%)

Query: 1   MYKKNISPSELALLESISQYLLDD---------DATSFQIPISSPSET-----TINSNET 46
           MY ++   S+LALL+SI ++LL D         +  S   P+ S S +        SN+ 
Sbjct: 1   MYGQSCYESDLALLDSIRRHLLGDSEEHRFGAPNVNSGSTPLYSRSSSFGRLYPCLSNDW 60

Query: 47  LSFTENSDVSNDMETYRALHDAINVGWI-SFDQ---------------IDDETDGTSTST 90
                  D S DM  Y  L DA+NVGW+ S D                +  ETD      
Sbjct: 61  GELPLMEDDSEDMLLYGVLRDAVNVGWVPSLDASSPESFSSAFMPPVTVKSETDLFPAPE 120

Query: 91  TKSTPDRTEVARDTLV---GARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAA 147
               P   +     +V   G  YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAA
Sbjct: 121 PICNPPVVQGPAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAA 180

Query: 148 LAYDRAAFNMRGSKAKLNFPHLIGSNVEPVPLGRVTKKRASPEPSSPSSSSS 199
           LAYDRAA+ MRGS+A LNFP  I S  EP P+ RVT KRAS EP S S S S
Sbjct: 181 LAYDRAAYRMRGSRALLNFPLRINSG-EPEPV-RVTAKRASAEPCSSSESGS 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668939|gb|ADE41124.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 144/245 (58%), Gaps = 37/245 (15%)

Query: 1   MYKKNISPSELALLESISQYLLDD--DATSFQI-PISSPSETTINSNETLSFTE--NSDV 55
           M++     S+ +LLESI Q+LLDD  D T  ++ P +S S   ++S ++LSF+   +++ 
Sbjct: 1   MFEDICLVSDFSLLESIRQHLLDDNFDTTLQELSPTASGSPPPMHS-QSLSFSTLFSTES 59

Query: 56  SNDMETYRALHDAINV-GWIS--FDQIDDETDGTSTSTTKSTPDRTE---VARDTLVGAR 109
             DM     L D  +V G +S   D+    +D       +STP + E   V R  +V  R
Sbjct: 60  WMDMPFKVELEDTNDVVGSLSDGTDEWSPSSDHHHVDVIESTPVKPEPWEVVRQEIVVVR 119

Query: 110 ----------YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRG 159
                     +RGVRRRPWGK+ AEIRDPKKNG R+WLGTY T E AALAYD+AAF +RG
Sbjct: 120 ETHTPPSRQHFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETAEGAALAYDQAAFKIRG 179

Query: 160 SKAKLNFPHLIGS-NVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKR 218
           SKAKLNFPHLIGS   EPV   RVT KR  PE S+ SS S S            SPKPKR
Sbjct: 180 SKAKLNFPHLIGSEGYEPV---RVTVKRRVPEFSTSSSLSESG-----------SPKPKR 225

Query: 219 RNYGI 223
           RN G+
Sbjct: 226 RNIGL 230

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137170|ref|XP_002327053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835368|gb|EEE73803.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 142/239 (59%), Gaps = 34/239 (14%)

Query: 1   MYKKNISPSELALLESISQYLLDDDATSFQIP-ISSPSETTINSNETLSF-----TEN-S 53
           MY +  S S+ ALLESI  +LL+D+     +P I++  +      E+LSF      EN S
Sbjct: 1   MYSQAASRSDFALLESIRHHLLEDEP----VPEINNGIQARPVYCESLSFNRLFSMENWS 56

Query: 54  DV-------SNDMETYRALHDAINVGWISFDQIDDETDGTSTSTTKSTPDRTEVARDTL- 105
           D+       S  M     + +++++ W  ++Q+D  T  ++     S  D    A + L 
Sbjct: 57  DILLQIDNSSQTMACDTQVPESLDMQWSLWNQVDSMTTTSNYEFEVSVED----ASNYLP 112

Query: 106 --VGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAK 163
              G  Y+GVRRRPWGK+ AEIRDPKKNG R WLGTY TPEDAA+AYDRAAF MRG+KAK
Sbjct: 113 PPKGRNYKGVRRRPWGKYAAEIRDPKKNGARQWLGTYETPEDAAMAYDRAAFKMRGAKAK 172

Query: 164 LNFPHLIG-SNVEPVPLGRVTKKRASPEPSSPSSSSSSSSSSSFTVLSYDSPKPKRRNY 221
           LNFPHLIG SN EPV   RVT KR      SP  SS SS  SS + +  +SPK KRR Y
Sbjct: 173 LNFPHLIGSSNYEPV---RVTNKRY-----SPEPSSLSSPVSSLSEVDDESPKSKRRTY 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594007|gb|AAM65925.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 92/141 (65%), Gaps = 9/141 (6%)

Query: 54  DVSNDMETYRALHDAINVGWI-SFDQIDDETDGTSTSTTKSTPDRTEVARDTLVGARYRG 112
           D S DM  Y  L DA++  W  S   +    +      TK++       +    G +YRG
Sbjct: 39  DDSQDMAIYNTLRDAVSSAWTPSVPPVTSPAEEDKPPATKASGSHAPRQK----GMQYRG 94

Query: 113 VRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLIGS 172
           VRRRPWGKF AEIRDPKKNG R+WLGTY TPEDAA+AYDRAAF +RGSKAKLNFPHLIGS
Sbjct: 95  VRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

Query: 173 -NVEPVPLGRVTKKRASPEPS 192
              EPV   R+  +R SPEPS
Sbjct: 155 CKYEPV---RIRPRRRSPEPS 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824519|ref|XP_002880142.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata] gi|297325981|gb|EFH56401.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 93/144 (64%), Gaps = 10/144 (6%)

Query: 54  DVSNDMETYRALHDAINVGWI-SFDQIDDETDGTSTSTTKSTP---DRTEVARDTLVGAR 109
           D S DM  Y  L DA++ GW  S   +    +  S    +  P     +   R    G +
Sbjct: 48  DDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEEVSVRGEEKPPATASGSHAPRQK--GMQ 105

Query: 110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHL 169
           YRGVRRRPWGKF AEIRDPKKNG R+WLGTY TPEDAA+AYDRAAF +RGSKAKLNFPHL
Sbjct: 106 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHL 165

Query: 170 IGS-NVEPVPLGRVTKKRASPEPS 192
           IGS   EPV   R+  +R SPEPS
Sbjct: 166 IGSCKYEPV---RIRPRRRSPEPS 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57012756|sp|Q40476.1|ERF1_TOBAC RecName: Full=Ethylene-responsive transcription factor 1; Short=NtERF1; AltName: Full=Ethylene-responsive element-binding factor 1; Short=EREBP-1 gi|1208495|dbj|BAA07321.1| ERF1 [Nicotiana tabacum]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 97/149 (65%), Gaps = 4/149 (2%)

Query: 54  DVSNDMETYRALHDAINVGW--ISFDQIDDETDGTSTSTTKSTPDRTEVARDTL-VGARY 110
           D S DM  Y  L DA+NVGW   +F   + +++        S  + T      L  G  Y
Sbjct: 46  DDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHY 105

Query: 111 RGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI 170
           RGVRRRPWGKF AEIRDP KNG R+WLGTY T E+AA+AYD+AA+ MRGSKA LNFPH I
Sbjct: 106 RGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRI 165

Query: 171 GSNVEPVPLGRVTKKRASPEPSSPSSSSS 199
           G N EP P+    K+RASPEP+S S +SS
Sbjct: 166 GLN-EPEPVRVTAKRRASPEPASSSENSS 193

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.588	0.615	0.520	6e-32
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.478	0.372	0.473	3.7e-29
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.771	0.748	0.441	2.4e-28
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.334	0.294	0.679	8.4e-28
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.245	0.205	0.706	5.4e-23
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.326	0.256	0.597	8.8e-23
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.258	0.438	0.737	1.5e-21
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.254	0.431	0.716	3e-21
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.254	0.451	0.716	4.9e-21
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.245	0.238	0.689	6.6e-21

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 76/146 (52%), Positives = 88/146 (60%)

Query:    35 SPSETTINSNETLSFTENS-DVSNDMETYRALHDAINVGWI-SFDQIXXXXXXXXXXXXX 92
             +PS + +  N+  S    S D S DM  Y  L DA++ GW  S   +             
Sbjct:    19 NPSFSNVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATK 78

Query:    93 XXXXXXEVARDTLVGARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDR 152
                      +    G +YRGVRRRPWGKF AEIRDPKKNG R+WLGTY TPEDAA+AYDR
Sbjct:    79 ASGSHAPRQK----GMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDR 134

Query:   153 AAFNMRGSKAKLNFPHLIGS-NVEPV 177
             AAF +RGSKAKLNFPHLIGS   EPV
Sbjct:   135 AAFQLRGSKAKLNFPHLIGSCKYEPV 160

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 271 (100.5 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 54/114 (47%), Positives = 67/114 (58%)

Query:   107 GARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNF 166
             G  YRGVR+RPWGKF AEIRDP KNG R+WLGT+++ E+AA+AYDRAA+ MRGS+A LNF
Sbjct:   146 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNF 205

Query:   167 PHLIGSNVEPVPLGRVT-KKRAXXXXXXXXXXXXXXXXXXFTVLSYDSPKPKRR 219
             P  IGS +           KR                    +  S  SPK ++R
Sbjct:   206 PLRIGSEIAAAAAAAAAGNKRPYPDPASSGSSSPSSSSSSSSSSSSGSPKRRKR 259

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 87/197 (44%), Positives = 107/197 (54%)

Query:     1 MYKK-NISPSELALLESISQYLLDDDATS-FQIPISSPSETTINSNETLSFTENSDVSND 58
             MY + NI  S+ ALLESI+++LL     +  ++  S+PS     S   L   EN   S D
Sbjct:     1 MYGQCNIE-SDYALLESITRHLLGGGGENELRLNESTPSSCFTESWGGLPLKEND--SED 57

Query:    59 METYRALHDAINVGWISFDQIXXXXXXXXXXXXXXXXXXXEV-------ARDTLVGAR-Y 110
             M  Y  L DA +    S D                     E          +T V A+ Y
Sbjct:    58 MLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHY 117

Query:   111 RGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI 170
             RGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYD AAF MRGS+A LNFP  +
Sbjct:   118 RGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRV 177

Query:   171 GSNVEPVPLGRVTKKRA 187
              S  EP P+ R+T KR+
Sbjct:   178 NSG-EPDPV-RITSKRS 192

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query:   107 GARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNF 166
             G  YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYDRAAF MRGS+A LNF
Sbjct:   145 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204

Query:   167 PHLIGSNVEPVPLGRVTKKRA 187
             P  + S  EP P+ R+  KR+
Sbjct:   205 PLRVNSG-EPDPV-RIKSKRS 223

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 41/58 (70%), Positives = 47/58 (81%)

Query:   110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
             YRGVR RPWGKF AEIRDP + GTR+WLGT+ T  +AA AYD+ AF +RGSKA LNFP
Sbjct:   137 YRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query:   110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHL 169
             YRGVR+RPWGKF AEIRDP K G+R+WLGT++T  +AA AYD AAF +RGSKA LNFP  
Sbjct:   156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215

Query:   170 IGSNVEPVPLGRVTKKR 186
             +G        G   +KR
Sbjct:   216 VGKWKPRADEGEKKRKR 232

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/61 (73%), Positives = 52/61 (85%)

Query:   108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
             AR+RGVRRRPWGKF AEIRDP +NG R+WLGT+ T E+AA AYDRAAFN+RG  A LNFP
Sbjct:    18 ARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77

Query:   168 H 168
             +
Sbjct:    78 N 78

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)

Query:   109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPH 168
             +YRGVR+RPWGK+ AEIRD  ++G R+WLGT+NT EDAA AYDRAAF MRG +A LNFPH
Sbjct:    13 KYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPH 72

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query:   109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPH 168
             +YRGVRRRPWGK+ AEIRD +K+G R+WLGT++T EDAA AYDRAA++MRG  A LNFPH
Sbjct:    19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPH 78

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 40/58 (68%), Positives = 48/58 (82%)

Query:   110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
             YRGVR+RPWGKF AEIRD  +NG R+WLGT++  E+AALAYD+AAF  +GS A LNFP
Sbjct:    86 YRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFP 143

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-32
pfam00847	53	pfam00847, AP2, AP2 domain	8e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  117 bits (296), Expect = 1e-34
 Identities = 42/61 (68%), Positives = 51/61 (83%), Gaps = 1/61 (1%)

Query: 109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPH 168
           +YRGVR+RPWGK+VAEIRDP K G R+WLGT++T E+AA AYDRAAF  RG  A+LNFP+
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 169 L 169
            
Sbjct: 60  S 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  111 bits (279), Expect = 5e-32
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
           ++YRGVR+RPWGK+VAEIRDP   G RIWLGT++T E+AA AYDRAA  +RGS A LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 168 HL 169
             
Sbjct: 60  DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 66.1 bits (162), Expect = 8e-15
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 109 RYRGVRRRP-WGKFVAEIRDPKKNGT-RIWLGTYNTPEDAALAYDRAAFNMRG 159
            Y+GVR    WG++VAEIRDP +    R  LGT+ T E+AA A   A   +RG
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PHA00280	121	putative NHN endonuclease	99.41
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.22
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.28

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=6.5e-21  Score=135.92  Aligned_cols=61  Identities=69%  Similarity=1.253  Sum_probs=56.5

Q ss_pred             CceeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 026607          108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHL  169 (236)
Q Consensus       108 S~YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G~~A~lNFP~~  169 (236)
                      |+||||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.|+++++|.++.+|||+.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999943 279999999999999999999999999999999999973

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=8.8e-20  Score=131.74  Aligned_cols=61  Identities=67%  Similarity=1.298  Sum_probs=56.9

Q ss_pred             ceeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 026607          109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI  170 (236)
Q Consensus       109 ~YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G~~A~lNFP~~~  170 (236)
                      +|+||+++++|||+|+|+++. +|+.+|||+|+|+||||+|||.|+++++|.++.+|||...
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~   61 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL   61 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCcc
Confidence            599999988999999999865 5799999999999999999999999999999999999854

>PHA00280 putative NHN endonuclease

Probab=99.41  E-value=3.9e-13  Score=109.77  Aligned_cols=57  Identities=12%  Similarity=0.148  Sum_probs=51.5

Q ss_pred             CCCCCCceeEEEeCC-CCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 026607          103 DTLVGARYRGVRRRP-WGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAK  163 (236)
Q Consensus       103 ~~~~~S~YRGVr~r~-~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G~~A~  163 (236)
                      .+.++|+|+||++.+ .|||+|+|++   +||+++||.|+++|+|+.||+ ++.++||++|.
T Consensus        62 ~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         62 PKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            456789999999765 7999999999   999999999999999999997 77889999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.22  E-value=2.1e-11  Score=84.84  Aligned_cols=53  Identities=30%  Similarity=0.441  Sum_probs=46.4

Q ss_pred             CceeEEEeCC-CCcEEEEEeCCCCCC--eeeecCCCCCHHHHHHHHHHHHHhhcCC
Q 026607          108 ARYRGVRRRP-WGKFVAEIRDPKKNG--TRIWLGTYNTPEDAALAYDRAAFNMRGS  160 (236)
Q Consensus       108 S~YRGVr~r~-~GKW~A~I~~~~k~G--krv~LGtFdT~EEAA~AYD~AA~~l~G~  160 (236)
                      |+|+||++.+ .++|+|+|++...+|  ++++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999665 799999999854444  8999999999999999999999999884

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.28  E-value=5.7  Score=26.70  Aligned_cols=39  Identities=10%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             cEEEEEe-CCCCCC--eeeecCCCCCHHHHHHHHHHHHHhhc
Q 026607          120 KFVAEIR-DPKKNG--TRIWLGTYNTPEDAALAYDRAAFNMR  158 (236)
Q Consensus       120 KW~A~I~-~~~k~G--krv~LGtFdT~EEAA~AYD~AA~~l~  158 (236)
                      +|...|. ....+|  ++++-+-|.|..||-.+..++...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883 333344  67899999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		5e-24
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-23

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 54/67 (80%)
Query: 107 GARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNF 166
           G  YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYDRAAF MRGS+A LNF
Sbjct: 3   GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
Query: 167 PHLIGSN 173
           P  + S 
Sbjct: 63  PLRVNSG 69

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 51/58 (87%)
Query: 110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFP 167
           YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYDRAAF MRGS+A LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-43

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  140 bits (354), Expect = 2e-43
 Identities = 47/62 (75%), Positives = 52/62 (83%)

Query: 109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPH 168
            YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYDRAAF MRGS+A LNFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 169 LI 170
            +
Sbjct: 62  RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.65
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	81.89

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.2e-26  Score=167.93  Aligned_cols=63  Identities=75%  Similarity=1.310  Sum_probs=60.0

Q ss_pred             CceeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 026607          108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI  170 (236)
Q Consensus       108 S~YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G~~A~lNFP~~~  170 (236)
                      .+||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||+.|
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            379999999999999999999888999999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.65  E-value=0.091  Score=39.34  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             CCCceeEEEeCC-CCcEEEEEeCCCCCCeeee-------cCCC--CCHHHHHHHHHHH
Q 026607          106 VGARYRGVRRRP-WGKFVAEIRDPKKNGTRIW-------LGTY--NTPEDAALAYDRA  153 (236)
Q Consensus       106 ~~S~YRGVr~r~-~GKW~A~I~~~~k~Gkrv~-------LGtF--dT~EEAA~AYD~A  153 (236)
                      ..|+|.||++.+ .+.|.|.-.+   +|++..       +| |  +.+.+||..|.+.
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~   57 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYD---GASRRSRTFHPKHFN-MDKEKARLAAVEFMKT   57 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEE---TTEEEEEEECCTTHH-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEeecCCceEEEEEec---CCeEeeeeechhhcC-cCHHHHHHHHHHHHHH
Confidence            578999999776 7999999998   666542       44 4  3455555555443

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=81.89  E-value=0.2  Score=40.90  Aligned_cols=38  Identities=8%  Similarity=-0.136  Sum_probs=29.0

Q ss_pred             eeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHH
Q 026607          110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYD  151 (236)
Q Consensus       110 YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD  151 (236)
                      ++||.+...++|.+.|..   + +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            467654234678899987   4 4578999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-36

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  120 bits (304), Expect = 2e-36
 Identities = 47/62 (75%), Positives = 52/62 (83%)

Query: 109 RYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPH 168
            YRGVR+RPWGKF AEIRDP KNG R+WLGT+ T EDAALAYDRAAF MRGS+A LNFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 169 LI 170
            +
Sbjct: 62  RV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3.8e-27  Score=169.51  Aligned_cols=63  Identities=75%  Similarity=1.310  Sum_probs=59.7

Q ss_pred             CceeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 026607          108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI  170 (236)
Q Consensus       108 S~YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G~~A~lNFP~~~  170 (236)
                      .+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||+|+++++|.+|.+|||..|
T Consensus         1 ~~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            369999999999999999998888999999999999999999999999999999999999864