Citrus Sinensis ID: 026623

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MHFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHccccccEEEEEEccccccccHHHHcccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccEcccccccccccccccccccccHHHccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcHHccHHHHHHHHcccEEEEEEEcccccccccEEEcccEEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mhfrykqmetcitpfpevsstkevaggelkkfpsrlfdvppriangevegvtgksyqeDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAalespkswvmnvvpttakntlgvIYERGLIGIyhdwcegfstyprtydLIHANGVFslyentckpedILLEMDRilrpegavIFRDEVDALNKVRKFAEgmrwdtkmmdhedgplmpEKILIAVKQYWVgsagnstsd
Flexible Loop (DISEMBL)
mhfrykqmetcitpfpevssTKEVAGGELKkfpsrlfdvppriangevegvtgksyqedsKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKfaegmrwdtkmMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD
Low Complexity Region (SEG)
MHFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD
Disordered region (IsUnstruct)
**********CI***********************LFDVP*RIANG*VEGVT***YQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVG********
Disordered Region (DISOPRED)
MHFRYKQMETCITPF***************KFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHE**PLMPEKILIAVKQ************
Disordered Region (DISEMBL)
MHFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVG********
Disordered Region (DISPRO)
MHFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q94EJ6	621	Probable methyltransferas	yes	no	0.948	0.359	0.766	1e-103
B9DFI7	616	Probable methyltransferas	no	no	0.965	0.368	0.722	1e-97
Q9C884	639	Probable methyltransferas	no	no	0.961	0.353	0.572	2e-77
Q9SZX8	633	Probable methyltransferas	no	no	0.965	0.358	0.578	2e-76
Q9ZPH9	633	Probable methyltransferas	no	no	0.982	0.364	0.570	2e-74
O80844	631	Probable methyltransferas	no	no	0.957	0.356	0.573	4e-73
Q9ZW75	611	Probable methyltransferas	no	no	0.902	0.346	0.534	4e-58
Q9C6S7	603	Probable methyltransferas	no	no	0.944	0.368	0.450	1e-48
Q940J9	623	Probable methyltransferas	no	no	0.910	0.343	0.418	1e-46
Q93W95	600	Probable methyltransferas	no	no	0.902	0.353	0.448	2e-46

>sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 194/223 (86%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK++ETC+TPFP+VS+ +EVAGG+LKKFP RLF VPP I+ G + GV  +SYQED  LWK
Sbjct: 383 YKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWK 442

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           K V  YK++N LIG+ RYRNVMDMNAGLGGFAAALESPKSWVMNV+PT  KNTL V+YER
Sbjct: 443 KRVTGYKRINRLIGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYER 502

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYD IHA+GVFSLY+++CK EDILLE DRILRPEG VIFRDE
Sbjct: 503 GLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDE 562

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVG 227
           VD LN VRK  +GMRWDTK+MDHEDGPL+PEKIL+A KQYWV 
Sbjct: 563 VDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWVA 605

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2

 Score =  355 bits (911), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/231 (72%), Positives = 194/231 (83%), Gaps = 4/231 (1%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+ME CITP+PE SS+ EVAGGEL+ FP RL  VPPRI++G + GVT  +Y++D++ WK
Sbjct: 387 YKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWK 446

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
           KHV AYK++NSL+ T RYRN+MDMNAG GGFAAALES K WVMNVVPT A KN LGV+YE
Sbjct: 447 KHVKAYKRINSLLDTGRYRNIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYE 506

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RGLIGIYHDWCE FSTYPRTYDLIHAN +FSLY+N C  +DILLEMDRILRPEGAVI RD
Sbjct: 507 RGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRD 566

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           +VD L KV++   GMRWD K++DHEDGPL+PEK+LIAVKQYWV    NSTS
Sbjct: 567 DVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQYWV---TNSTS 614

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1

 Score =  288 bits (737), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 168/227 (74%), Gaps = 1/227 (0%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK +E+C+TP PE +S+ E AGG L+ +P+R F VPPRI  G +  +  + ++ED+++WK
Sbjct: 413 YKDLESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWK 472

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
           + ++ YK++   +   R+RN+MDMNA LGGFAAA+    SWVMNVVP  A K TLGVI+E
Sbjct: 473 ERISYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFE 532

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RG IG Y DWCEGFSTYPRTYDLIHA G+FS+YEN C    ILLEMDRILRPEG V+FRD
Sbjct: 533 RGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRD 592

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAG 230
            V+ L K++    GMRW ++++DHE GP  PEKIL+AVK YW G + 
Sbjct: 593 TVEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPSS 639

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score =  285 bits (729), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/228 (57%), Positives = 167/228 (73%), Gaps = 1/228 (0%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK +ETCITP PE ++  + AGG L+ +P R F VPPRI  G +  +  + ++ED+++WK
Sbjct: 395 YKDLETCITPLPETNNPDDSAGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWK 454

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
           + +  YKK+   +   R+RN+MDMNA LGGFAA++    SWVMNVVP  A K TLGVIYE
Sbjct: 455 ERIAHYKKIVPELSHGRFRNIMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYE 514

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RGLIG Y DWCEGFSTYPRTYD+IHA G+FSLYE+ C    ILLEMDRILRPEG V+ RD
Sbjct: 515 RGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRD 574

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGN 231
            V+ LNKV K  +GM+W ++++DHE GP  PEKIL+AVK YW G   +
Sbjct: 575 NVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKILVAVKTYWTGQPSD 622

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/235 (57%), Positives = 172/235 (73%), Gaps = 4/235 (1%)

Query: 5   YKQMETCITPFPEV--SSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKL 62
           Y ++ETC+TP PEV  S  KEVAGG+L ++P RL  +PPRI +G +EG+T   +  +++ 
Sbjct: 398 YTKLETCLTPLPEVTGSEIKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEK 457

Query: 63  WKKHVNAYKKMNS-LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV 120
           W++ V+ YKK +  L  T RYRN +DMNA LGGFA+AL     WVMNVVP  A  NTLGV
Sbjct: 458 WQRRVSYYKKYDQQLAETGRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGV 517

Query: 121 IYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVI 180
           IYERGLIG Y +WCE  STYPRTYD IHA+ VFSLY++ C  EDILLEMDRILRP+G+VI
Sbjct: 518 IYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVI 577

Query: 181 FRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD 235
            RD++D L KV+K  + M+W+ ++ DHE+GPL  EKIL  VK+YW   A + +SD
Sbjct: 578 IRDDIDVLTKVKKITDAMQWEGRIGDHENGPLEREKILFLVKEYWTAPAPDQSSD 632

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 171/230 (74%), Gaps = 5/230 (2%)

Query: 5   YKQMETCITPFPEVSST---KEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSK 61
           Y +M++C+TP PEV      K VAGG+++K+P+RL  +PPR+  G +E +T +++ E++K
Sbjct: 390 YTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTK 449

Query: 62  LWKKHVNAYKKMNSLIG-TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG 119
           LWK+ V+ YKK++  +G T RYRN++DMNA LGGFAAAL     WVMNVVP  AK NTLG
Sbjct: 450 LWKQRVSYYKKLDYQLGETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLG 509

Query: 120 VIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAV 179
           VIYERGLIG Y +WCE  STYPRTYD IHA+ VF+LY+  C+PE+ILLEMDRILRP G V
Sbjct: 510 VIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGV 569

Query: 180 IFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSA 229
           I RD+VD L KV++  +G+ W+ ++ DHE GP   EKI  AVKQYW   A
Sbjct: 570 IIRDDVDVLIKVKELTKGLEWEGRIADHEKGPHEREKIYYAVKQYWTVPA 619

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1

 Score =  224 bits (571), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/217 (53%), Positives = 140/217 (64%), Gaps = 5/217 (2%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+ME CITP P+V+ T +     LK +P RL  VP R+  G ++G T   ++ D+ LW+
Sbjct: 394 YKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGSIQGTTIAGFKADTNLWQ 449

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE 123
           + V  Y      +   +YRNV+DMNAGLGGFAAAL     WVMNVVP   K NTLGV+Y+
Sbjct: 450 RRVLYYDTKFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYD 509

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RGLIG Y +WCE  STYPRTYDLIHANGVFSLY + C   DILLEM RILRPEGAVI RD
Sbjct: 510 RGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAVIIRD 569

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIA 220
             D L KV+     MRW+  M   ++       ILI 
Sbjct: 570 RFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIV 606

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 141/231 (61%), Gaps = 9/231 (3%)

Query: 5   YKQMETCI-TPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLW 63
           Y  +  C+  P P+V   K+   G + K+P RL   P RI  G+V G +  S + D   W
Sbjct: 381 YTPLRPCVVAPTPKV---KKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKW 435

Query: 64  KKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE 123
           K  V  YKK+   +GT + RNVMDMN   GGF+AAL     WVMNVV + + N+L V+++
Sbjct: 436 KNRVKHYKKVLPALGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFD 495

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RGLIG YHDWCE FSTYPRTYDL+H + +F+L  + C+ + ILLEMDRILRP G VI R+
Sbjct: 496 RGLIGTYHDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRE 555

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
               ++ +   A+G+RW  +  + E   +  EKIL+  K+ W  S  N TS
Sbjct: 556 SSYFMDAITTLAKGIRWSCRREETEYA-VKSEKILVCQKKLWFSS--NQTS 603

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 139/234 (59%), Gaps = 20/234 (8%)

Query: 8   METCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHV 67
           ME CITP+ +     +  G  L  +P+RL   PPR+A+    G +   +++D++LWK+ V
Sbjct: 390 MEACITPYSK--HDHKTKGSGLAPWPARLTSSPPRLADF---GYSTDMFEKDTELWKQQV 444

Query: 68  NAY-KKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL 126
           ++Y   M+S + +   RN+MDM A +G FAAAL+    WVMNVV     NTL +IY+RGL
Sbjct: 445 DSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPDGPNTLKLIYDRGL 504

Query: 127 IGIYHDWCEGFSTYPRTYDLIHANGVFS-LYENTCKPEDILLEMDRILRPEGAVIFRDEV 185
           IG  H+WCE FSTYPRTYDL+HA  +FS +    C  ED+L+EMDRILRP G VI RD+ 
Sbjct: 505 IGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQ 564

Query: 186 DALNKVRKFAEGMRWDTKM-----------MDHEDGPLMPEKILIAVKQYWVGS 228
             +  ++K+ + + W+T              D EDG      + I  K+ W+ S
Sbjct: 565 SVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGE--NNVVFIVQKKLWLTS 616

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/232 (44%), Positives = 138/232 (59%), Gaps = 20/232 (8%)

Query: 5   YKQMETCITPFPEVSSTK-EVAGGELKKFPSRLFDVPPR---IANGEVEGVTGKSYQEDS 60
           Y +++ C+T     SS K E A G + K+P RL  VP R   + NG         ++ D+
Sbjct: 371 YFKLKRCVT---RPSSVKGEHALGTISKWPERLTKVPSRAIVMKNGL------DVFEADA 421

Query: 61  KLWKKHVNAYK-KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLG 119
           + W + V  Y+  +N  + +   RNVMDMNA  GGFAA L S   WVMNV+P     TL 
Sbjct: 422 RRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPLTLD 481

Query: 120 VIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLY------ENTCKPEDILLEMDRIL 173
           VIY+RGLIG+YHDWCE FSTYPRTYD IH +G+ SL       ++ C   D+++EMDRIL
Sbjct: 482 VIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRIL 541

Query: 174 RPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYW 225
           RPEG V+ RD  + L+KV + A  +RW + + + E      EKILIA K  W
Sbjct: 542 RPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLW 593

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224126563	612	predicted protein [Populus trichocarpa]	0.978	0.375	0.821	1e-112
359474588	611	PREDICTED: probable methyltransferase PM	0.978	0.376	0.821	1e-112
297742159	509	unnamed protein product [Vitis vinifera]	0.978	0.451	0.821	1e-111
255575722	612	ATP binding protein, putative [Ricinus c	0.982	0.377	0.822	1e-111
224138032	605	predicted protein [Populus trichocarpa]	0.978	0.380	0.8	1e-108
356563439	613	PREDICTED: probable methyltransferase PM	0.978	0.375	0.782	1e-107
356511449	613	PREDICTED: probable methyltransferase PM	0.982	0.376	0.770	1e-106
297800264	624	dehydration-responsive family protein [A	0.948	0.357	0.784	1e-102
255562840	612	ATP binding protein, putative [Ricinus c	0.974	0.374	0.774	1e-101
222424918	420	AT4G18030 [Arabidopsis thaliana]	0.948	0.530	0.766	1e-101

>gi|224126563|ref|XP_002329585.1| predicted protein [Populus trichocarpa] gi|222870294|gb|EEF07425.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/230 (82%), Positives = 205/230 (89%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+ME C TP PEV+S  EVAGGELKKFP RLF +PPR+A G V+GVT +S+QED+KLWK
Sbjct: 380 YKEMEACKTPLPEVNSANEVAGGELKKFPERLFAIPPRVAKGLVKGVTAESFQEDNKLWK 439

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KH+NAYK+ N LIGT RYRN+MDMNAGLGGFAAALESPKSWVMNVVPT AKNTLGVIYER
Sbjct: 440 KHINAYKRNNKLIGTTRYRNIMDMNAGLGGFAAALESPKSWVMNVVPTIAKNTLGVIYER 499

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GL+GIYHDWCEGFSTYPRTYD IHANGVFSLY+N C  EDILLEMDRILRPEG VIFRDE
Sbjct: 500 GLVGIYHDWCEGFSTYPRTYDFIHANGVFSLYQNKCNLEDILLEMDRILRPEGTVIFRDE 559

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           VD LNKV+K A GMRWDTKMMDHEDGPL+PEKIL+ VKQYWVG  GNSTS
Sbjct: 560 VDVLNKVKKIAGGMRWDTKMMDHEDGPLVPEKILVVVKQYWVGGTGNSTS 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474588|ref|XP_002282093.2| PREDICTED: probable methyltransferase PMT14-like [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/230 (82%), Positives = 210/230 (91%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+METC+TP+PEV+S  EVAGGELKKFP+RLF +PPRIA G VEGVT +SY+ED+KLWK
Sbjct: 380 YKKMETCVTPYPEVTSANEVAGGELKKFPARLFAIPPRIAAGLVEGVTVESYEEDNKLWK 439

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KHVN YK++N L+GT RYRN+MDMNAGLGGFAAALESPKSWVMNVVPT AKNTLGVIYER
Sbjct: 440 KHVNTYKRINKLLGTTRYRNIMDMNAGLGGFAAALESPKSWVMNVVPTIAKNTLGVIYER 499

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYD IHA+GVFSLY+NTCK EDILLEMDRILRPEGAV+FRDE
Sbjct: 500 GLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQNTCKLEDILLEMDRILRPEGAVMFRDE 559

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           VD L KV+K A+GMRW+T MMDHEDGPL+PEKIL+ VKQYWVG   NSTS
Sbjct: 560 VDVLIKVKKIAKGMRWNTNMMDHEDGPLVPEKILVVVKQYWVGGGDNSTS 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742159|emb|CBI33946.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/230 (82%), Positives = 210/230 (91%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+METC+TP+PEV+S  EVAGGELKKFP+RLF +PPRIA G VEGVT +SY+ED+KLWK
Sbjct: 278 YKKMETCVTPYPEVTSANEVAGGELKKFPARLFAIPPRIAAGLVEGVTVESYEEDNKLWK 337

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KHVN YK++N L+GT RYRN+MDMNAGLGGFAAALESPKSWVMNVVPT AKNTLGVIYER
Sbjct: 338 KHVNTYKRINKLLGTTRYRNIMDMNAGLGGFAAALESPKSWVMNVVPTIAKNTLGVIYER 397

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYD IHA+GVFSLY+NTCK EDILLEMDRILRPEGAV+FRDE
Sbjct: 398 GLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQNTCKLEDILLEMDRILRPEGAVMFRDE 457

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           VD L KV+K A+GMRW+T MMDHEDGPL+PEKIL+ VKQYWVG   NSTS
Sbjct: 458 VDVLIKVKKIAKGMRWNTNMMDHEDGPLVPEKILVVVKQYWVGGGDNSTS 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575722|ref|XP_002528760.1| ATP binding protein, putative [Ricinus communis] gi|223531763|gb|EEF33582.1| ATP binding protein, putative [Ricinus communis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/231 (82%), Positives = 210/231 (90%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+M+TC+TP P+V+S KEVAGGELKKFP RLF VPPRIA G VEGVT +SY ED+KLWK
Sbjct: 380 YKEMQTCVTPLPKVASAKEVAGGELKKFPERLFAVPPRIAKGLVEGVTEESYLEDNKLWK 439

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KHV  YK++N LIGT RYRNVMDMNAGLGGFAAALESPKSWVMNVVPT A+NTLGVIYER
Sbjct: 440 KHVKEYKRINKLIGTVRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTAAQNTLGVIYER 499

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GL+GIYHDWCEGFSTYPRTYDLIHA+GVFSLY+  CK EDILLEMDRILRPEG+VIFRDE
Sbjct: 500 GLVGIYHDWCEGFSTYPRTYDLIHADGVFSLYQKICKLEDILLEMDRILRPEGSVIFRDE 559

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD 235
           VD LN+V++ A GMRWDTKMMDHEDGPL+PEKIL+AVKQYWVG  GNSTS+
Sbjct: 560 VDVLNEVKRIAGGMRWDTKMMDHEDGPLVPEKILVAVKQYWVGGTGNSTSN 610

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138032|ref|XP_002326501.1| predicted protein [Populus trichocarpa] gi|222833823|gb|EEE72300.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/230 (80%), Positives = 204/230 (88%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+M+TC TP P+V+S  EVAGG LKKFP RL  VPP+IA G VEGVT +S++ED+KL +
Sbjct: 373 YKEMKTCKTPLPKVTSANEVAGGRLKKFPERLHAVPPQIAKGLVEGVTAESFEEDNKLLR 432

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KH++AYK++N LIGT RYRN+MDMNA LGGFAAALESPKSWVMNVVPT AKNTLGVIYER
Sbjct: 433 KHLHAYKRINKLIGTTRYRNIMDMNARLGGFAAALESPKSWVMNVVPTIAKNTLGVIYER 492

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GL+GIYHDWCEGFSTYPRTYD IHANGVFSLY+N C  EDILLEMDRILRPEG VIFRDE
Sbjct: 493 GLVGIYHDWCEGFSTYPRTYDFIHANGVFSLYQNKCNLEDILLEMDRILRPEGTVIFRDE 552

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           VD LNKV+K  EGMRWDTKMMDHEDGPL+PEKIL+AVKQYWVG  GNSTS
Sbjct: 553 VDVLNKVKKITEGMRWDTKMMDHEDGPLVPEKILVAVKQYWVGGTGNSTS 602

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563439|ref|XP_003549970.1| PREDICTED: probable methyltransferase PMT14-like [Glycine max]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/230 (78%), Positives = 203/230 (88%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           Y++ME C TP PEV+S  EVAGGEL+KFP+RLF VPPRIA G + GVT +SYQED+KLWK
Sbjct: 381 YQKMEVCKTPLPEVTSKTEVAGGELQKFPARLFAVPPRIAQGIIPGVTAESYQEDNKLWK 440

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KHVNAYK+MN LIGT RYRNVMDMNAGLGGFAA LES KSWVMNVVPT A+NTLGV+YER
Sbjct: 441 KHVNAYKRMNKLIGTTRYRNVMDMNAGLGGFAAVLESQKSWVMNVVPTIAENTLGVVYER 500

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYDLIHANG+FSLY++ C  EDILLEMDRILRPEGA+I RDE
Sbjct: 501 GLIGIYHDWCEGFSTYPRTYDLIHANGLFSLYQDKCNLEDILLEMDRILRPEGAIIIRDE 560

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           VD LNKV+K   GMRW+ K++DHEDGPL+PEKIL+AVK YWVG++ N TS
Sbjct: 561 VDVLNKVKKIVRGMRWEAKLVDHEDGPLVPEKILVAVKVYWVGTSKNKTS 610

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511449|ref|XP_003524439.1| PREDICTED: probable methyltransferase PMT14-like [Glycine max]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/231 (77%), Positives = 205/231 (88%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           Y++ME C TP PEV+S  EVAGGEL+KFP+RLF VPPRIA G + GVT +SYQED+KLWK
Sbjct: 381 YQKMEVCKTPLPEVTSKNEVAGGELQKFPARLFAVPPRIAQGAIPGVTAESYQEDNKLWK 440

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           KHVNAYK+MN LIGT RYRNVMDMNAGLGGFAAALES KSWVMNVVP+ A+NTLGV+YER
Sbjct: 441 KHVNAYKRMNKLIGTTRYRNVMDMNAGLGGFAAALESQKSWVMNVVPSIAENTLGVVYER 500

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYDLIHANG+FS+Y++ C  EDILLEMDRILRPEGA+I RDE
Sbjct: 501 GLIGIYHDWCEGFSTYPRTYDLIHANGLFSIYQDKCNLEDILLEMDRILRPEGAIIIRDE 560

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD 235
           VD LN+V+K   GMRWD K++DHEDGPL+PEKIL+A+K YWVG++ N TS+
Sbjct: 561 VDVLNQVKKIVGGMRWDAKLVDHEDGPLVPEKILVALKVYWVGTSKNKTSN 611

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800264|ref|XP_002868016.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297313852|gb|EFH44275.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/223 (78%), Positives = 195/223 (87%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK++ETC+TPFP+VSS +EVAGG+LKKFP RLF VPP I+ G + GV  +SYQED  LWK
Sbjct: 383 YKEIETCVTPFPKVSSEEEVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWK 442

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           K V AYK++N LIG+ RYRNVMDMNAGLGGFAAALESPKSWVMNV PT  KNTL V+YER
Sbjct: 443 KRVTAYKRINRLIGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVNPTINKNTLSVVYER 502

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYD IHANGVFSLY+++CK EDILLE DRILRPEG VIFRDE
Sbjct: 503 GLIGIYHDWCEGFSTYPRTYDFIHANGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDE 562

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVG 227
           VD LN VRK A+GMRWDTK+MDHEDGPL+PEKIL+A KQYWV 
Sbjct: 563 VDVLNDVRKIADGMRWDTKLMDHEDGPLVPEKILVATKQYWVA 605

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562840|ref|XP_002522425.1| ATP binding protein, putative [Ricinus communis] gi|223538310|gb|EEF39917.1| ATP binding protein, putative [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/231 (77%), Positives = 201/231 (87%), Gaps = 2/231 (0%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK+ME CITP+PEV S  EVAGG LK FP RL+ VPPR+++G + GV+ ++YQED+K WK
Sbjct: 381 YKKMEACITPYPEVGSQDEVAGGGLKAFPDRLYAVPPRVSSGSIPGVSVETYQEDNKNWK 440

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
           KHV+AYKK+N LI + RYRN+MDMNAGLGGFAAAL+SPK WVMNVVPT A K+TLGVIYE
Sbjct: 441 KHVSAYKKINRLIDSGRYRNIMDMNAGLGGFAAALQSPKLWVMNVVPTIAEKSTLGVIYE 500

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RGLIGIYHDWCE FSTYPRTYDLIHANGVFSLY+  C  EDILLEMDRILRPEGAVIFRD
Sbjct: 501 RGLIGIYHDWCEAFSTYPRTYDLIHANGVFSLYKEKCDFEDILLEMDRILRPEGAVIFRD 560

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
           EVD L KVRK   GMRWDTKM+DHEDGPL+PEKIL+AVKQYWV + GNSTS
Sbjct: 561 EVDVLIKVRKIVAGMRWDTKMVDHEDGPLVPEKILVAVKQYWV-TGGNSTS 610

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222424918|dbj|BAH20410.1| AT4G18030 [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 194/223 (86%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           YK++ETC+TPFP+VS+ +EVAGG+LKKFP RLF VPP I+ G + GV  +SYQED  LWK
Sbjct: 182 YKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWK 241

Query: 65  KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
           K V  YK++N LIG+ RYRNVMDMNAGLGGFAAALESPKSWVMNV+PT  KNTL V+YER
Sbjct: 242 KRVTGYKRINRLIGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYER 301

Query: 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
           GLIGIYHDWCEGFSTYPRTYD IHA+GVFSLY+++CK EDILLE DRILRPEG VIFRDE
Sbjct: 302 GLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDE 361

Query: 185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVG 227
           VD LN VRK  +GMRWDTK+MDHEDGPL+PEKIL+A KQYWV 
Sbjct: 362 VDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWVA 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2141035	621	AT4G18030 [Arabidopsis thalian	0.974	0.368	0.756	1.4e-96
TAIR|locus:2202805	616	AT1G26850 [Arabidopsis thalian	0.965	0.368	0.722	1.2e-90
TAIR|locus:2196651	639	AT1G33170 [Arabidopsis thalian	0.948	0.348	0.580	1.6e-72
TAIR|locus:2127711	633	AT4G10440 [Arabidopsis thalian	0.982	0.364	0.568	5.3e-72
TAIR|locus:2117728	633	AT4G00750 [Arabidopsis thalian	0.982	0.364	0.570	4.3e-70
TAIR|locus:2050679	631	AT2G45750 [Arabidopsis thalian	0.940	0.350	0.579	4.9e-69
TAIR|locus:2041031	611	AT2G43200 [Arabidopsis thalian	0.897	0.345	0.537	6.1e-55
TAIR|locus:2034522	603	AT1G31850 [Arabidopsis thalian	0.944	0.368	0.450	1.6e-47
TAIR|locus:2117733	600	QUA3 "QUASIMODO 3" [Arabidopsi	0.914	0.358	0.458	9.1e-45
TAIR|locus:2134756	600	ERD3 "early-responsive to dehy	0.957	0.375	0.413	1.9e-44

TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 174/230 (75%), Positives = 199/230 (86%)

Query:     5 YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
             YK++ETC+TPFP+VS+ +EVAGG+LKKFP RLF VPP I+ G + GV  +SYQED  LWK
Sbjct:   383 YKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWK 442

Query:    65 KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124
             K V  YK++N LIG+ RYRNVMDMNAGLGGFAAALESPKSWVMNV+PT  KNTL V+YER
Sbjct:   443 KRVTGYKRINRLIGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYER 502

Query:   125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184
             GLIGIYHDWCEGFSTYPRTYD IHA+GVFSLY+++CK EDILLE DRILRPEG VIFRDE
Sbjct:   503 GLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDE 562

Query:   185 VDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWV-GSAGNST 233
             VD LN VRK  +GMRWDTK+MDHEDGPL+PEKIL+A KQYWV G  GN++
Sbjct:   563 VDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYWVAGDDGNNS 612

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 167/231 (72%), Positives = 194/231 (83%)

Query:     5 YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
             YK+ME CITP+PE SS+ EVAGGEL+ FP RL  VPPRI++G + GVT  +Y++D++ WK
Sbjct:   387 YKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWK 446

Query:    65 KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
             KHV AYK++NSL+ T RYRN+MDMNAG GGFAAALES K WVMNVVPT A KN LGV+YE
Sbjct:   447 KHVKAYKRINSLLDTGRYRNIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYE 506

Query:   124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
             RGLIGIYHDWCE FSTYPRTYDLIHAN +FSLY+N C  +DILLEMDRILRPEGAVI RD
Sbjct:   507 RGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRD 566

Query:   184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
             +VD L KV++   GMRWD K++DHEDGPL+PEK+LIAVKQYWV    NSTS
Sbjct:   567 DVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAVKQYWVT---NSTS 614

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 130/224 (58%), Positives = 167/224 (74%)

Query:     5 YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
             YK +E+C+TP PE +S+ E AGG L+ +P+R F VPPRI  G +  +  + ++ED+++WK
Sbjct:   413 YKDLESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWK 472

Query:    65 KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
             + ++ YK++   +   R+RN+MDMNA LGGFAAA+    SWVMNVVP  A K TLGVI+E
Sbjct:   473 ERISYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFE 532

Query:   124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
             RG IG Y DWCEGFSTYPRTYDLIHA G+FS+YEN C    ILLEMDRILRPEG V+FRD
Sbjct:   533 RGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRD 592

Query:   184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVG 227
              V+ L K++    GMRW ++++DHE GP  PEKIL+AVK YW G
Sbjct:   593 TVEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTG 636

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 132/232 (56%), Positives = 169/232 (72%)

Query:     5 YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
             YK +ETCITP PE ++  + AGG L+ +P R F VPPRI  G +  +  + ++ED+++WK
Sbjct:   395 YKDLETCITPLPETNNPDDSAGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWK 454

Query:    65 KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-KNTLGVIYE 123
             + +  YKK+   +   R+RN+MDMNA LGGFAA++    SWVMNVVP  A K TLGVIYE
Sbjct:   455 ERIAHYKKIVPELSHGRFRNIMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYE 514

Query:   124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
             RGLIG Y DWCEGFSTYPRTYD+IHA G+FSLYE+ C    ILLEMDRILRPEG V+ RD
Sbjct:   515 RGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRD 574

Query:   184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD 235
              V+ LNKV K  +GM+W ++++DHE GP  PEKIL+AVK YW G   +  ++
Sbjct:   575 NVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKILVAVKTYWTGQPSDKNNN 626

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 134/235 (57%), Positives = 172/235 (73%)

Query:     5 YKQMETCITPFPEV--SSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKL 62
             Y ++ETC+TP PEV  S  KEVAGG+L ++P RL  +PPRI +G +EG+T   +  +++ 
Sbjct:   398 YTKLETCLTPLPEVTGSEIKEVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEK 457

Query:    63 WKKHVNAYKKMNS-LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV 120
             W++ V+ YKK +  L  T RYRN +DMNA LGGFA+AL     WVMNVVP  A  NTLGV
Sbjct:   458 WQRRVSYYKKYDQQLAETGRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGV 517

Query:   121 IYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVI 180
             IYERGLIG Y +WCE  STYPRTYD IHA+ VFSLY++ C  EDILLEMDRILRP+G+VI
Sbjct:   518 IYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVI 577

Query:   181 FRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD 235
              RD++D L KV+K  + M+W+ ++ DHE+GPL  EKIL  VK+YW   A + +SD
Sbjct:   578 IRDDIDVLTKVKKITDAMQWEGRIGDHENGPLEREKILFLVKEYWTAPAPDQSSD 632

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 131/226 (57%), Positives = 170/226 (75%)

Query:     5 YKQMETCITPFPEVSST---KEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSK 61
             Y +M++C+TP PEV      K VAGG+++K+P+RL  +PPR+  G +E +T +++ E++K
Sbjct:   390 YTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTK 449

Query:    62 LWKKHVNAYKKMNSLIG-TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG 119
             LWK+ V+ YKK++  +G T RYRN++DMNA LGGFAAAL     WVMNVVP  AK NTLG
Sbjct:   450 LWKQRVSYYKKLDYQLGETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLG 509

Query:   120 VIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAV 179
             VIYERGLIG Y +WCE  STYPRTYD IHA+ VF+LY+  C+PE+ILLEMDRILRP G V
Sbjct:   510 VIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGV 569

Query:   180 IFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYW 225
             I RD+VD L KV++  +G+ W+ ++ DHE GP   EKI  AVKQYW
Sbjct:   570 IIRDDVDVLIKVKELTKGLEWEGRIADHEKGPHEREKIYYAVKQYW 615

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 116/216 (53%), Positives = 140/216 (64%)

Query:     5 YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
             YK+ME CITP P+V+ T +     LK +P RL  VP R+  G ++G T   ++ D+ LW+
Sbjct:   394 YKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGSIQGTTIAGFKADTNLWQ 449

Query:    65 KHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE 123
             + V  Y      +   +YRNV+DMNAGLGGFAAAL     WVMNVVP   K NTLGV+Y+
Sbjct:   450 RRVLYYDTKFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYD 509

Query:   124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
             RGLIG Y +WCE  STYPRTYDLIHANGVFSLY + C   DILLEM RILRPEGAVI RD
Sbjct:   510 RGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAVIIRD 569

Query:   184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILI 219
               D L KV+     MRW+  M   ++       ILI
Sbjct:   570 RFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILI 605

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 104/231 (45%), Positives = 141/231 (61%)

Query:     5 YKQMETCIT-PFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLW 63
             Y  +  C+  P P+V   K+   G + K+P RL   P RI  G+V G +  S + D   W
Sbjct:   381 YTPLRPCVVAPTPKV---KKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKW 435

Query:    64 KKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE 123
             K  V  YKK+   +GT + RNVMDMN   GGF+AAL     WVMNVV + + N+L V+++
Sbjct:   436 KNRVKHYKKVLPALGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFD 495

Query:   124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
             RGLIG YHDWCE FSTYPRTYDL+H + +F+L  + C+ + ILLEMDRILRP G VI R+
Sbjct:   496 RGLIGTYHDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRE 555

Query:   184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTS 234
                 ++ +   A+G+RW  +  + E   +  EKIL+  K+ W  S  N TS
Sbjct:   556 SSYFMDAITTLAKGIRWSCRREETEYA-VKSEKILVCQKKLWFSS--NQTS 603

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 105/229 (45%), Positives = 139/229 (60%)

Query:     5 YKQMETCITPFPEVSSTK-EVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLW 63
             Y +++ C+T  P  SS K E A G + K+P RL  VP R A     G+    ++ D++ W
Sbjct:   371 YFKLKRCVTR-P--SSVKGEHALGTISKWPERLTKVPSR-AIVMKNGLD--VFEADARRW 424

Query:    64 KKHVNAYK-KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIY 122
              + V  Y+  +N  + +   RNVMDMNA  GGFAA L S   WVMNV+P     TL VIY
Sbjct:   425 ARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPLTLDVIY 484

Query:   123 ERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE------NTCKPEDILLEMDRILRPE 176
             +RGLIG+YHDWCE FSTYPRTYD IH +G+ SL +      + C   D+++EMDRILRPE
Sbjct:   485 DRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPE 544

Query:   177 GAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYW 225
             G V+ RD  + L+KV + A  +RW + + + E      EKILIA K  W
Sbjct:   545 GKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLW 593

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0052546 "cell wall pectin metabolic process" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 96/232 (41%), Positives = 132/232 (56%)

Query:     5 YKQMETCIT-PFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLW 63
             Y  +  C+  P P++  T   +     K+P RL   P RI+  +V G  G  ++ D   W
Sbjct:   375 YTPLRPCVVVPSPKLKKTDLES---TPKWPERLHTTPERIS--DVPGGNGNVFKHDDSKW 429

Query:    64 KKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE 123
             K     YKK+   IG+ + RNVMDMN   GG AAAL +   WVMNVV + A NTL V+++
Sbjct:   430 KTRAKHYKKLLPAIGSDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAANTLPVVFD 489

Query:   124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
             RGLIG YHDWCE FSTYPRTYDL+H +G+F+     C  + ++LEMDRILRP G  I R+
Sbjct:   490 RGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRE 549

Query:   184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQYWVGSAGNSTSD 235
                  + +   A+ +RW  +    E      EK+LI  K+ W  S  +S ++
Sbjct:   550 SSYFADSIASVAKELRWSCRKEQTESASAN-EKLLICQKKLWYSSNASSETN 600

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94EJ6	PMTE_ARATH	2, ., 1, ., 1, ., -	0.7668	0.9489	0.3590	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	1e-130
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	0.002

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  377 bits (971), Expect = e-130
 Identities = 137/219 (62%), Positives = 168/219 (76%), Gaps = 3/219 (1%)

Query: 5   YKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWK 64
           Y  ME CITP PEVS   EV GG L+K+P RL  VPPR+A+G++ GV+ ++++ D++LWK
Sbjct: 290 YVPMEACITPLPEVSH--EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWK 347

Query: 65  KHVNAYKKMNS-LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE 123
           + V+ YK++   LI   R RNVMDMNAG GGFAAAL     WVMNVVP  + +TL VIY+
Sbjct: 348 RRVSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYD 407

Query: 124 RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183
           RGLIGIYHDWCE FSTYPRTYDL+HA+ +FSLY+  C  EDILLEMDRILRP GAVI RD
Sbjct: 408 RGLIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRD 467

Query: 184 EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK 222
           +VD L+KV+K A+ MRW+ ++ D EDGP  PEKILIA K
Sbjct: 468 DVDVLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIF 181
           ++D++ ++ V     +   PE  L E+ R+L+P G ++ 
Sbjct: 57  SFDVVVSSLVLHHLPD---PERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.83
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.79
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.78
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.73
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.66
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.66
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.65
PRK05785	226	hypothetical protein; Provisional	99.64
PLN02244	340	tocopherol O-methyltransferase	99.64
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.64
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.61
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.59
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.59
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.58
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.58
PRK11207	197	tellurite resistance protein TehB; Provisional	99.55
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.54
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.53
PLN02336	475	phosphoethanolamine N-methyltransferase	99.53
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.53
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.52
PRK12335	287	tellurite resistance protein TehB; Provisional	99.52
PRK08317	241	hypothetical protein; Provisional	99.51
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.5
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.5
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.49
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.48
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.48
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.47
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.46
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.46
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.46
PRK06202	232	hypothetical protein; Provisional	99.46
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.46
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.46
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.46
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.44
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.44
PLN02490	340	MPBQ/MSBQ methyltransferase	99.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.4
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.4
PRK06922	677	hypothetical protein; Provisional	99.39
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.39
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.39
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.38
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.38
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.36
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.34
TIGR00438	188	rrmJ cell division protein FtsJ.	99.34
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.33
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.33
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.32
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.32
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.31
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.31
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.31
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.29
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.29
PRK04266	226	fibrillarin; Provisional	99.28
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.28
PRK14968	188	putative methyltransferase; Provisional	99.26
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.25
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.23
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.23
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.22
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.22
KOG4300	252	consensus Predicted methyltransferase [General fun	99.22
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.2
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.2
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.19
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.17
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.16
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.12
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.11
KOG3010	261	consensus Methyltransferase [General function pred	99.11
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.11
PLN03075	296	nicotianamine synthase; Provisional	99.1
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.1
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.1
TIGR03438	301	probable methyltransferase. This model represents	99.08
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.08
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.07
PRK14967	223	putative methyltransferase; Provisional	99.06
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.06
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.05
PTZ00146	293	fibrillarin; Provisional	99.04
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.03
PRK07402	196	precorrin-6B methylase; Provisional	99.01
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.99
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.99
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.95
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.93
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.92
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.92
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.91
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.91
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.9
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.9
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.89
COG2890	280	HemK Methylase of polypeptide chain release factor	98.88
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.86
KOG2361	264	consensus Predicted methyltransferase [General fun	98.85
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.85
COG4123	248	Predicted O-methyltransferase [General function pr	98.85
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.85
PRK04457	262	spermidine synthase; Provisional	98.82
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.8
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.79
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.78
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.76
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.75
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.75
PRK00811	283	spermidine synthase; Provisional	98.74
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.73
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.71
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.69
PRK01581	374	speE spermidine synthase; Validated	98.68
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.66
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.65
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.64
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.63
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.61
KOG1271	227	consensus Methyltransferases [General function pre	98.61
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.57
PHA03411	279	putative methyltransferase; Provisional	98.56
PRK03612	521	spermidine synthase; Provisional	98.55
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.53
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.49
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.48
PLN02366	308	spermidine synthase	98.47
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.46
KOG2940	325	consensus Predicted methyltransferase [General fun	98.46
KOG1331	293	consensus Predicted methyltransferase [General fun	98.45
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.44
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.42
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.4
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.4
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.4
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.36
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.34
PHA03412	241	putative methyltransferase; Provisional	98.29
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.29
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.28
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.27
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.26
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.24
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.23
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.17
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.17
PLN02672	1082	methionine S-methyltransferase	98.15
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.13
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.1
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.1
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.09
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.04
COG2521	287	Predicted archaeal methyltransferase [General func	98.02
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.0
PRK04148	134	hypothetical protein; Provisional	97.97
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.95
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.92
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.92
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.91
KOG2904	328	consensus Predicted methyltransferase [General fun	97.88
PLN02476	278	O-methyltransferase	97.88
COG4122	219	Predicted O-methyltransferase [General function pr	97.88
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.87
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.81
KOG2899	288	consensus Predicted methyltransferase [General fun	97.79
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.79
PLN02823	336	spermine synthase	97.77
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.77
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.73
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.73
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.72
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.68
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.67
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.61
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.6
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.57
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.49
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.47
PRK00536	262	speE spermidine synthase; Provisional	97.46
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.44
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.4
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.33
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.32
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.31
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.3
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.29
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.28
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.24
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.22
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.2
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.18
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.16
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.16
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.14
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.09
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.95
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.93
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.92
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.86
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.81
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.79
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.72
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.69
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.67
PRK13699	227	putative methylase; Provisional	96.67
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.52
KOG3115	249	consensus Methyltransferase-like protein [General	96.51
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.51
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.38
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.09
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.08
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.05
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.97
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.93
PF13679	141	Methyltransf_32: Methyltransferase domain	95.85
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.83
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.76
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.72
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.65
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.65
COG4798	238	Predicted methyltransferase [General function pred	95.61
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.5
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.36
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.27
PRK11524	284	putative methyltransferase; Provisional	95.24
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.12
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.0
COG0742	187	N6-adenine-specific methylase [DNA replication, re	94.95
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.95
COG3897	218	Predicted methyltransferase [General function pred	94.92
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	94.8
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.4
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	94.35
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.17
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.91
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	93.59
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.32
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	93.1
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	93.02
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	92.88
COG2520	341	Predicted methyltransferase [General function pred	92.77
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	91.57
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	91.45
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	91.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	91.39
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.36
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.93
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	90.43
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	89.8
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	89.38
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	89.33
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	88.67
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	88.08
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	87.31
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	87.08
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	86.34
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	85.85
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	85.03
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	83.59
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	83.01
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	82.98
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	82.84
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	82.43
COG4262	508	Predicted spermidine synthase with an N-terminal m	81.71
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	81.7
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	81.68
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	80.87
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	80.14

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=1.3e-67  Score=499.01  Aligned_cols=219  Identities=62%  Similarity=1.072  Sum_probs=211.8

Q ss_pred             CcccccccccCCCCCCCCccccccCCccccCCcccCCCCcccccCccccccccccccchHHHHHHHHHHHHHhh-hhCCC
Q 026623            2 HFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNS-LIGTR   80 (235)
Q Consensus         2 ~~wy~~~~~Ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~rl~~~~~~g~~~~~f~~d~~~W~~~v~~y~~~l~-~l~~~   80 (235)
                      ++||+||++||+|+|++.+  +.+++.+++||+||+++|+||.++++.|.+++.|.+|++.|++++++|+.++. .|+++
T Consensus       287 ~aWY~~l~~Cit~~p~~~~--~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~  364 (506)
T PF03141_consen  287 AAWYVPLEACITPLPEVSS--EIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWG  364 (506)
T ss_pred             chhhcchhhhcCcCCcccc--cccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            6899999999999999753  67789999999999999999999888999999999999999999999998776 68999


Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      ++||||||++|+|||||+|.++++|||||+|++.+++|.++++|||||+||||||+|||||+||||||++++|+++.++|
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC  444 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRC  444 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccc
Confidence            99999999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          161 KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      +++++|.||||||||||++||+|+.+++.+|++++++|+|++.++++|+|+.++|+||+|||
T Consensus       445 ~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  445 EMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             cHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999998

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=2.8e-33  Score=265.61  Aligned_cols=201  Identities=16%  Similarity=0.273  Sum_probs=166.2

Q ss_pred             cccccCCCCCCCCccccccCCccccCCccc------CCCCcccccCcccccccc--------ccccchHHHHHHHHHHHH
Q 026623            7 QMETCITPFPEVSSTKEVAGGELKKFPSRL------FDVPPRIANGEVEGVTGK--------SYQEDSKLWKKHVNAYKK   72 (235)
Q Consensus         7 ~~~~Ci~~~p~~~~~~~~~~~~~~~wp~rl------~~~p~rl~~~~~~g~~~~--------~f~~d~~~W~~~v~~y~~   72 (235)
                      +...|++|+|.+|       ..|.+||++.      |+|+++|+.  .++.+..        .|+.....|...+.+|..
T Consensus        33 ~~~~CLVp~P~gY-------k~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid  103 (506)
T PF03141_consen   33 ERLRCLVPPPKGY-------KTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYID  103 (506)
T ss_pred             CCCccccCCCccC-------CCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHH
Confidence            3568999999976       6799999998      788899887  5555443        399999999999999997


Q ss_pred             Hhh-hh----CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccc-ccCCCCCCCccc
Q 026623           73 MNS-LI----GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW-CEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~-~l----~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~-~e~l~~~p~sFD  145 (235)
                      .+. .|    ..+.+|.+||+|||+|+|+++|.++++.+|++.+-|.. ...++|.|||++..+... .+.|||++++||
T Consensus       104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fD  183 (506)
T PF03141_consen  104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFD  183 (506)
T ss_pred             HHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchh
Confidence            554 22    45789999999999999999999999999999999998 899999999987664322 367998889999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC----------hHHHHHHHHHHhccCceeEeecCCCCCCCCc
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE----------VDALNKVRKFAEGMRWDTKMMDHEDGPLMPE  215 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~----------~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e  215 (235)
                      +|||+..+.......  ..+|.|++|||||||+||++-.          .+.+++|++++++|||+....        +.
T Consensus       184 mvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~--------~~  253 (506)
T PF03141_consen  184 MVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE--------KG  253 (506)
T ss_pred             hhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee--------eC
Confidence            999998887543211  4799999999999999999942          346899999999999998763        45


Q ss_pred             eEEEEEecccc
Q 026623          216 KILIAVKQYWV  226 (235)
Q Consensus       216 ~~l~~~k~~w~  226 (235)
                      .+.|+||+.-.
T Consensus       254 ~~aIwqKp~~~  264 (506)
T PF03141_consen  254 DTAIWQKPTNN  264 (506)
T ss_pred             CEEEEeccCCc
Confidence            59999998754

; GO: 0008168 methyltransferase activity

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.83  E-value=2e-20  Score=165.17  Aligned_cols=115  Identities=21%  Similarity=0.306  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccc
Q 026623           60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHD  132 (235)
Q Consensus        60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~  132 (235)
                      ++.||+..-.      .++..++.+|||+|||||.++..+++.-. ...|+++|+| +||..+.+|-.      +..++.
T Consensus        36 ~~~Wr~~~i~------~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~  108 (238)
T COG2226          36 HRLWRRALIS------LLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG  108 (238)
T ss_pred             hHHHHHHHHH------hhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence            4566655432      22323578999999999999999988633 5689999999 99999988843      334678


Q ss_pred             cccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          133 WCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       133 ~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      .+|.|||.++|||+|.+++.|.+++   +++.+|+||+|||||||.+++.|.
T Consensus       109 dAe~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~  157 (238)
T COG2226         109 DAENLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEF  157 (238)
T ss_pred             chhhCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence            8899998889999999999999885   899999999999999999999974

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.79  E-value=1.7e-19  Score=158.56  Aligned_cols=116  Identities=21%  Similarity=0.301  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c--cccccc
Q 026623           60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L--IGIYHD  132 (235)
Q Consensus        60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l--~~~~~~  132 (235)
                      ++.||+.+...      +...+..+|||+|||||.++..|.+.-.....|+++|.| +||..+.+|-    .  +..+..
T Consensus        32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~  105 (233)
T PF01209_consen   32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG  105 (233)
T ss_dssp             -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred             HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence            46677755432      233346799999999999999988742223579999999 9999988762    2  445677


Q ss_pred             cccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          133 WCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       133 ~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      .+|.||+.+++||+|.|++.|++++   ++..+|.||+|||||||.++|.|.
T Consensus       106 da~~lp~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  106 DAEDLPFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             BTTB--S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHhcCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeec
Confidence            7899997779999999999999875   789999999999999999999973

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.78  E-value=3.2e-19  Score=131.09  Aligned_cols=91  Identities=25%  Similarity=0.358  Sum_probs=75.3

Q ss_pred             eeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc---cccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623           86 MDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG---IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK  161 (235)
Q Consensus        86 LD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~---~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~  161 (235)
                      ||+|||+|.++..|.+++  ..+++++|.+ ++++.+.++....   ..+...+.+|+.+++||+|++..+|+|+   .+
T Consensus         1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~   75 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED   75 (95)
T ss_dssp             EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred             CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence            899999999999999984  3589999999 8999888875422   4555567888777999999999999998   37


Q ss_pred             hHHHHHHHhhhhcCCcEEEE
Q 026623          162 PEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii  181 (235)
                      ...++.|+.|+|||||+++|
T Consensus        76 ~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   76 PEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCcCeEEeC
Confidence            89999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.73  E-value=9.4e-18  Score=149.24  Aligned_cols=100  Identities=21%  Similarity=0.156  Sum_probs=82.2

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc---------cccccccccCCCCCCCccceee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL---------IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl---------~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      .+..+|||+|||+|.++..|.++ +. ..+|+++|.| +|+..+.+|..         +......++.+|+.+++||+|+
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            34679999999999999888764 21 2379999999 99998876521         2344556678886669999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++.+|+|++   ++..+|.|+.|+|||||.+++.|
T Consensus       151 ~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        151 MGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence            999999885   78999999999999999999987

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.66  E-value=2.4e-16  Score=138.77  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=84.4

Q ss_pred             HHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeeh
Q 026623           72 KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        72 ~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      .++..+......+|||+|||+|.++..|..+.. ...|+++|.| .|+..+.++++ ...+...+.++ .+++||+|+|+
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~   96 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSN   96 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEe
Confidence            355556655678999999999999999987621 2479999999 99999888763 23333345553 35899999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+|+|++   ++..+|.++.|+|||||.+++..
T Consensus        97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         97 AALQWVP---EHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence            9999986   67899999999999999999973

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.66  E-value=5e-16  Score=136.01  Aligned_cols=104  Identities=19%  Similarity=0.251  Sum_probs=84.6

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehh
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+......+|||+|||+|.++..|...+   ..++++|.+ +|+..+.++.. ...+....+.+|+.+++||+|+++.
T Consensus        35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~  111 (251)
T PRK10258         35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL  111 (251)
T ss_pred             HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc
Confidence            334544456789999999999999998764   479999999 99998888753 2334455577886668999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++++..   ++..+|.|+.|+|||||.++++.
T Consensus       112 ~l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        112 AVQWCG---NLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             hhhhcC---CHHHHHHHHHHHcCCCeEEEEEe
Confidence            998764   78999999999999999999985

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.65  E-value=3.5e-16  Score=143.68  Aligned_cols=97  Identities=15%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.++..|+..+   .+|+++|.+ ++++.+.++.    +   +...+..++.+++.+++||+|+|..+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            35689999999999999998764   479999999 9999887652    1   22344555677766689999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+.   ++..+|.|+.|+|||||.++|.+
T Consensus       208 LeHv~---d~~~~L~~l~r~LkPGG~liist  235 (322)
T PLN02396        208 IEHVA---NPAEFCKSLSALTIPNGATVLST  235 (322)
T ss_pred             HHhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            99996   67899999999999999999996

>PRK05785 hypothetical protein; Provisional

Probab=99.64  E-value=9.1e-16  Score=133.94  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC
Q 026623           61 KLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST  139 (235)
Q Consensus        61 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~  139 (235)
                      ..|++.+.....  ..+..  ..+|||+|||||.++..|.+..  ..+|+++|.| +||+.+.++.  ..++..++.+|+
T Consensus        35 ~~wr~~~~~~l~--~~~~~--~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~  106 (226)
T PRK05785         35 VRWRAELVKTIL--KYCGR--PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALPF  106 (226)
T ss_pred             HHHHHHHHHHHH--HhcCC--CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCCC
Confidence            557765543221  11222  4699999999999999998763  2479999999 9999988764  234566788997


Q ss_pred             CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCc
Q 026623          140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEG  177 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG  177 (235)
                      .+++||+|+++++++|++   +++.+|+||.|||||.+
T Consensus       107 ~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        107 RDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence            779999999999998875   78999999999999953

>PLN02244 tocopherol O-methyltransferase

Probab=99.64  E-value=1.2e-15  Score=140.64  Aligned_cols=99  Identities=18%  Similarity=0.228  Sum_probs=80.2

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc---cccccccccCCCCCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL---IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      ....+|||+|||+|.++..|.++.  ..+|+++|.+ .++..+.+    +|+   +......++.+|+.+++||+|++..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~  194 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME  194 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence            456789999999999999998753  2479999999 88876544    344   2334445566786679999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++|++   +...+|.|+.|+|||||.|+|.+
T Consensus       195 ~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        195 SGEHMP---DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             chhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            999986   67899999999999999999975

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.64  E-value=1.2e-16  Score=128.45  Aligned_cols=96  Identities=25%  Similarity=0.386  Sum_probs=75.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ....+|||+|||+|.++..|.+.+.   .++++|.+ .++..   +......++- +..+..+++||+|+|+.+|+|++ 
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~-~~~~~~~~~fD~i~~~~~l~~~~-   92 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDA-QDPPFPDGSFDLIICNDVLEHLP-   92 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEEC-HTHHCHSSSEEEEEEESSGGGSS-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhh-hhhhccccchhhHhhHHHHhhcc-
Confidence            4567999999999999999988763   79999999 77766   2222221111 11223459999999999999997 


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                        ++..+|.++.|+|||||++++.+..
T Consensus        93 --d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   93 --DPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence              6899999999999999999999854

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.61  E-value=1.6e-14  Score=123.25  Aligned_cols=153  Identities=16%  Similarity=0.313  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc--cccccc
Q 026623           60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL--IGIYHD  132 (235)
Q Consensus        60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl--~~~~~~  132 (235)
                      ...|++++-.-..+.+.++.  ..+|||+|||+|.++..++.... ...|+++|.+ +++..+.+    .++  +..++.
T Consensus        26 ~~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~  102 (187)
T PRK00107         26 EELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG  102 (187)
T ss_pred             HHHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence            45788887554434444543  57899999999998888875311 3479999999 88876554    344  334455


Q ss_pred             cccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE-eecCC-CC
Q 026623          133 WCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK-MMDHE-DG  210 (235)
Q Consensus       133 ~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~-~~~~~-~~  210 (235)
                      .++.++. +++||+|+|+..       .+++.++.++.|+|||||.+++.+.......+..+++.+.|.+. .+..+ .|
T Consensus       103 d~~~~~~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  174 (187)
T PRK00107        103 RAEEFGQ-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG  174 (187)
T ss_pred             cHhhCCC-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence            5555664 689999998642       36789999999999999999999988888889999999999864 22222 23


Q ss_pred             CCCCceEEEEEec
Q 026623          211 PLMPEKILIAVKQ  223 (235)
Q Consensus       211 ~~~~e~~l~~~k~  223 (235)
                      -.+.-.+.|.+|+
T Consensus       175 ~~~~~~~~~~~~~  187 (187)
T PRK00107        175 LDGERHLVIIRKK  187 (187)
T ss_pred             CCCcEEEEEEecC
Confidence            3233445566664

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.61  E-value=2.6e-15  Score=133.70  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccccccccCCCCCCCcccee
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      ++..++..+..+|||+|||+|.++..|+...  ...|+++|.+ +++..+.++..    +...+..+...|+.+++||+|
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V  121 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMI  121 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEE
Confidence            4444555556799999999999998887642  2479999999 89988877632    233334444566555899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ++..+++|++ ..+...+|.|+.|+|||||+|++.|.
T Consensus       122 ~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        122 YSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999998874 23678999999999999999999974

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=5.9e-15  Score=127.24  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +......+|||+|||+|.++..|.+.-.-..+|+++|.+ +++..+.++    ++  +..++..++.+++.+++||+|++
T Consensus        41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  120 (231)
T TIGR02752        41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI  120 (231)
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence            443346799999999999999887641113479999999 888876554    22  23344455666754589999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +.+++|++   +...+|.|+.|+|||||++++.+.
T Consensus       121 ~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       121 GFGLRNVP---DYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             ecccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence            99998875   678999999999999999999863

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00452 methyltransferase, putative

Probab=99.59  E-value=7.9e-15  Score=134.36  Aligned_cols=121  Identities=14%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH--HHc--C---c
Q 026623           55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI--YER--G---L  126 (235)
Q Consensus        55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~--~~R--g---l  126 (235)
                      .|..++ .|+..+. |.++++.++....++|||+|||+|.++..++..+.  ..|+++|.| .|+..+  .++  +   .
T Consensus        97 ~~~~~~-e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~  172 (314)
T TIGR00452        97 GIKIDS-EWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKR  172 (314)
T ss_pred             cccCCH-HHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCC
Confidence            344443 4554444 34456556665678999999999999988887653  369999999 777532  111  1   1


Q ss_pred             cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          127 IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       127 ~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.......+.++. ..+||+|+|+.+|+|.+   ++..+|.|++|+|||||.|++.+
T Consensus       173 v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       173 AILEPLGIEQLHE-LYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             eEEEECCHHHCCC-CCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence            1112222345553 36899999999999985   78899999999999999999873

Known examples to date are restricted to the proteobacteria.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=4.9e-15  Score=130.58  Aligned_cols=106  Identities=20%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             HHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCC-CCC
Q 026623           71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFS-TYP  141 (235)
Q Consensus        71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~-~~p  141 (235)
                      ..+++.+.. ...+|||+|||+|.++..|++.+   .+|+++|.+ +|+..+.++    |+.   ..++...+.++ +.+
T Consensus        35 ~~~l~~l~~-~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~  110 (255)
T PRK11036         35 DRLLAELPP-RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE  110 (255)
T ss_pred             HHHHHhcCC-CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence            334444543 35699999999999999999875   479999999 999987664    332   22333334444 345


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++||+|+|+.+|+|+.   ++..+|.++.|+|||||.+++..
T Consensus       111 ~~fD~V~~~~vl~~~~---~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        111 TPVDLILFHAVLEWVA---DPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             CCCCEEEehhHHHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence            8999999999999985   67899999999999999998864

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.58  E-value=7.7e-15  Score=130.36  Aligned_cols=118  Identities=17%  Similarity=0.150  Sum_probs=89.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCC-----CceeEEeecCcc-ccHHHHHHcC----ccc-----cccccccCCCCCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPK-----SWVMNVVPTTAK-NTLGVIYERG----LIG-----IYHDWCEGFSTYP  141 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~-----~~~~~V~~~D~s-~~L~~~~~Rg----l~~-----~~~~~~e~l~~~p  141 (235)
                      +++....++|||+||||-+|-.+.+.-     .-..+|+.+|++ +||.++.+|.    +-.     .+...+|.|||.+
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd  175 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD  175 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence            345567899999999999887777641     112589999999 9999877764    322     2344678999666


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHH-HHHHHHHhc
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDAL-NKVRKFAEG  197 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~-~~i~~~~~~  197 (235)
                      ++||..+.++.+...   .+++++|+|++|||||||.|.+.+-..+- ..++.++..
T Consensus       176 ~s~D~yTiafGIRN~---th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~  229 (296)
T KOG1540|consen  176 DSFDAYTIAFGIRNV---THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ  229 (296)
T ss_pred             CcceeEEEecceecC---CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence            999999999988654   58899999999999999999999854432 344444443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.58  E-value=7.2e-15  Score=134.77  Aligned_cols=108  Identities=18%  Similarity=0.239  Sum_probs=81.0

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH--HHc--C---ccccccccccCCCCCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI--YER--G---LIGIYHDWCEGFSTYP  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~--~~R--g---l~~~~~~~~e~l~~~p  141 (235)
                      |..+++.++....++|||+|||+|.++..|+..+.  ..|+++|.| .++...  ..+  +   -+.......+.+|+ +
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~  187 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L  187 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c
Confidence            34445556555568999999999999999988753  259999998 666431  111  1   12233334466776 8


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++||+|+|..+++|..   ++..+|.++.|+|||||.+++.+
T Consensus       188 ~~FD~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        188 KAFDTVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CCcCEEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999999999999875   78899999999999999999873

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.55  E-value=1.7e-14  Score=123.09  Aligned_cols=97  Identities=15%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcc--ccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLI--GIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~--~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...+|||+|||+|.++..|++++   .+|+++|.| ++++.+.+    +++.  .......+.++ ++++||+|+|+.+|
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~~  105 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-FDGEYDFILSTVVL  105 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-cCCCcCEEEEecch
Confidence            35689999999999999999875   379999999 88886543    3432  11222223333 35789999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+. ..+...++.++.|.|||||++++.
T Consensus       106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        106 MFLE-AKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             hhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence            8874 346789999999999999996554

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.54  E-value=2e-14  Score=122.42  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.++.+|++++   ..|+++|.+ .++..+.++    ++. ......++.++ ++++||+|+++.+|+|
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~~~~  106 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-LNEDYDFIFSTVVFMF  106 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-ccCCCCEEEEeccccc
Confidence            4689999999999999999875   379999999 888865433    432 11111122233 3578999999999998


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +. ..+...++.++.|.|||||++++.
T Consensus       107 ~~-~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       107 LQ-AGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence            84 346789999999999999996554

Part of a tellurite-reducing operon tehA and tehB

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=2.9e-14  Score=125.19  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=80.3

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeeh
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ++..+......+|||+|||+|.++..|++... ..+|+++|.+ .|+..+.++.- +.......+.+. .+++||+|+++
T Consensus        23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  100 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFAN  100 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEc
Confidence            44445545578999999999999999986521 2479999999 89988876631 222232333332 34799999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+|+|++   +...+|.++.|+|||||.+++..
T Consensus       101 ~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        101 ASLQWLP---DHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             cChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence            9999985   67899999999999999999973

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.53  E-value=2.7e-14  Score=136.03  Aligned_cols=101  Identities=19%  Similarity=0.290  Sum_probs=79.6

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--Cc---cccccccccCCCCCCCccceeeehh
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--GL---IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--gl---~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      ...+..+|||+|||+|.++..|++..  ...|+++|.| +++..+.++  ++   +...+..+..+++.+++||+|+|..
T Consensus       263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~  340 (475)
T PLN02336        263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD  340 (475)
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence            33456799999999999998888753  2479999999 999887665  22   2233333444564458999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++|++   +.+.+|.|+.|+|||||.+++.|
T Consensus       341 ~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        341 TILHIQ---DKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             cccccC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence            999986   67899999999999999999986

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.53  E-value=1.1e-14  Score=111.35  Aligned_cols=100  Identities=22%  Similarity=0.334  Sum_probs=73.8

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehh-
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANG-  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~-  151 (235)
                      ..+|||+|||+|.++.+|++. +  ...|+++|.+ .+++.+.++-    .   +..++...+........||+|++.. 
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   79 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFP--GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF   79 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence            468999999999999999982 3  2469999999 8999877664    2   2233322211133447799999999 


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .++++.+..+...+|.++.+.|||||+++|++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            45544322356799999999999999999986

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.52  E-value=7.4e-14  Score=119.11  Aligned_cols=98  Identities=19%  Similarity=0.262  Sum_probs=79.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ..+|||+|||+|.++..|.+... ...++++|.+ +++..+.++..  +..+....+.+++.+++||+|+++.+++|.. 
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-  112 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-  112 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence            46899999999999999987642 2358999999 88887776642  2233444466776669999999999999885 


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                        ++..+|.++.|+|||||.+++.+
T Consensus       113 --~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       113 --DLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             --CHHHHHHHHHHHcCCCcEEEEEe
Confidence              67899999999999999999985

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.52  E-value=7.2e-14  Score=125.62  Aligned_cols=118  Identities=15%  Similarity=0.200  Sum_probs=83.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcc-ccccccccCCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLI-GIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.++.+|+.++   .+|+++|.| .+++.+.+    .++. .......+..+ .+++||+|+++.+|+|
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~~~~fD~I~~~~vl~~  196 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-IQEEYDFILSTVVLMF  196 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-ccCCccEEEEcchhhh
Confidence            3589999999999999998875   379999999 88886543    3441 11111112222 3689999999999998


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEEe---C------h--HH---HHHHHHHHhccCceeEeec
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFRD---E------V--DA---LNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d---~------~--~~---~~~i~~~~~~~~W~~~~~~  206 (235)
                      +. ..++..++.+|.|+|||||++++..   .      .  ..   -.++....+.  |++..+.
T Consensus       197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~  258 (287)
T PRK12335        197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN  258 (287)
T ss_pred             CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence            84 4568899999999999999966542   0      0  11   3456666665  8887663

>PRK08317 hypothetical protein; Provisional

Probab=99.51  E-value=8.2e-14  Score=118.46  Aligned_cols=104  Identities=26%  Similarity=0.383  Sum_probs=79.6

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--Cc---cccccccccCCCCCCCccceeeeh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--GL---IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--gl---~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +......+|||+|||+|.++..+++...-..+++++|.+ .++..+.++  +.   +.......+.+++.+++||+|++.
T Consensus        15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~   94 (241)
T PRK08317         15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD   94 (241)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence            444456799999999999999888642112479999999 888888776  11   222222334456555899999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+|+|++   ++..++.++.|+|||||++++.+
T Consensus        95 ~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         95 RVLQHLE---DPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             chhhccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence            9999986   67899999999999999999875

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.51  E-value=7.2e-14  Score=124.76  Aligned_cols=131  Identities=15%  Similarity=0.173  Sum_probs=89.0

Q ss_pred             ccccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccch----HHHHHhcCC----CceeEEeecCcc-ccHHHHH
Q 026623           53 GKSYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGG----FAAALESPK----SWVMNVVPTTAK-NTLGVIY  122 (235)
Q Consensus        53 ~~~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~----faa~L~~~~----~~~~~V~~~D~s-~~L~~~~  122 (235)
                      ...|-.|...|......... ++.........+|+|+|||+|.    +|..|.+..    .+...|+++|++ .||+.|.
T Consensus        70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar  149 (264)
T smart00138       70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR  149 (264)
T ss_pred             CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence            44577777777776655322 2222222335699999999996    455554421    234689999999 9999876


Q ss_pred             HcC--------c-------------------------ccc-ccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHH
Q 026623          123 ERG--------L-------------------------IGI-YHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLE  168 (235)
Q Consensus       123 ~Rg--------l-------------------------~~~-~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~E  168 (235)
                      +.-        +                         +.. .+|.. ..++.+++||+|+|.++|+|+. ..+...++.+
T Consensus       150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~-~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~  227 (264)
T smart00138      150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL-AESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNR  227 (264)
T ss_pred             cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC-CCCCccCCCCEEEechhHHhCC-HHHHHHHHHH
Confidence            531        1                         111 13332 2443358999999999999984 2456789999


Q ss_pred             HhhhhcCCcEEEEEeCh
Q 026623          169 MDRILRPEGAVIFRDEV  185 (235)
Q Consensus       169 m~RVLRPGG~lii~d~~  185 (235)
                      +.|+|||||++++....
T Consensus       228 l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      228 FAEALKPGGYLFLGHSE  244 (264)
T ss_pred             HHHHhCCCeEEEEECcc
Confidence            99999999999998643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=7.4e-15  Score=110.81  Aligned_cols=90  Identities=24%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             eeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cccccc-cCCCCCC-CccceeeehhhhccC
Q 026623           86 MDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWC-EGFSTYP-RTYDLIHANGVFSLY  156 (235)
Q Consensus        86 LD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~-e~l~~~p-~sFDlV~a~~vl~h~  156 (235)
                      ||+|||+|.++..|.+.. ....++++|.| .|+..+.+|    +...  ...... +.+...+ ++||+|++..+|||+
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            799999999999998763 25689999999 898654443    2111  111111 1122222 699999999999999


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEE
Q 026623          157 ENTCKPEDILLEMDRILRPEGAV  179 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~l  179 (235)
                      +   ++..+|+.+.+.|||||.|
T Consensus        80 ~---~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 E---DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S----HHHHHHHHTTT-TSS-EE
T ss_pred             h---hHHHHHHHHHHHcCCCCCC
Confidence            3   8899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.50  E-value=3.7e-14  Score=125.01  Aligned_cols=97  Identities=19%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccc-cccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIY-HDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~-~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ...+|||+|||-|.++..|+..|   .+|+++|.+ .+++++..+.+    ...| ....|.|....++||+|+|..|++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            46799999999999999999987   589999999 89998775533    2111 112233432238999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++   +++.+++++.+.+||||.+++++
T Consensus       136 Hv~---dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         136 HVP---DPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             ccC---CHHHHHHHHHHHcCCCcEEEEec
Confidence            997   77899999999999999999996

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.49  E-value=6.9e-14  Score=123.97  Aligned_cols=99  Identities=20%  Similarity=0.226  Sum_probs=75.7

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      +..+|||+|||+|..+..++.. +. ...|+++|.+ +++..+.++    |+  +...+...+.+++.+++||+|+++.+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            4679999999999866555432 21 2369999999 899987764    32  12233344667755689999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++|.+   +...++.|+.|+|||||.|++.+
T Consensus       156 ~~~~~---d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        156 INLSP---DKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             ccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            98875   66899999999999999999985

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.48  E-value=7.2e-15  Score=111.74  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             EeeeccccchHHHHHhcCC--CceeEEeecCcc-ccHHHHHHcC----c-cccccccccCCCCCCCccceeeeh-hhhcc
Q 026623           85 VMDMNAGLGGFAAALESPK--SWVMNVVPTTAK-NTLGVIYERG----L-IGIYHDWCEGFSTYPRTYDLIHAN-GVFSL  155 (235)
Q Consensus        85 VLD~GCG~G~faa~L~~~~--~~~~~V~~~D~s-~~L~~~~~Rg----l-~~~~~~~~e~l~~~p~sFDlV~a~-~vl~h  155 (235)
                      |||+|||+|..+.+|.+..  .-...++++|.+ +||..+.++.    . +..++..++.+++..++||+|+|+ .+|+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999888642  112589999999 9999888876    2 334566666677666899999995 55999


Q ss_pred             CCCCCChHHHHHHHhhhhcCCc
Q 026623          156 YENTCKPEDILLEMDRILRPEG  177 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG  177 (235)
                      +. ..+++.+|.++.++|||||
T Consensus        81 ~~-~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LS-PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SS-HHHHHHHHHHHHHTEEEEE
T ss_pred             CC-HHHHHHHHHHHHHHhCCCC
Confidence            74 4578999999999999998

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.48  E-value=6.6e-14  Score=123.26  Aligned_cols=98  Identities=11%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CCceEeeeccccchHHHHHhc---CCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALES---PKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~---~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      ...+|||+|||+|.++..|+.   .+  ...++++|.| +|+..+.++    ++   +..+....+.+++  ..||+|++
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~--~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~  131 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHD--NCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL  131 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEeh
Confidence            356899999999999888865   23  2479999999 999988765    22   2223333333442  46999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.+|||+++ .+...++.||.|+|||||.|++.|
T Consensus       132 ~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        132 NFTLQFLEP-SERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999853 356799999999999999999997

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.47  E-value=7.2e-14  Score=113.60  Aligned_cols=100  Identities=22%  Similarity=0.429  Sum_probs=77.8

Q ss_pred             CceEeeeccccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCC-CCCccceeeehhh
Q 026623           82 YRNVMDMNAGLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFST-YPRTYDLIHANGV  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~-~p~sFDlV~a~~v  152 (235)
                      ..+|||+|||+|.++..|++ ... ..+++++|.+ ++++.+.++    ++.  ..++...+.++. +++.||+|+++.+
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            56999999999999999983 321 3479999999 999987773    442  334444444551 2389999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ++|+.   ++..+|.++.|.|+|||.+++.+..
T Consensus        83 l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   83 LHHFP---DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             GGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            98875   6789999999999999999999865

...

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.46  E-value=1.4e-13  Score=122.64  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=74.2

Q ss_pred             CCceEeeeccccchHHHHHhcC-C-CceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccC
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-K-SWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~-~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                      ...+|||+|||+|.++..|.+. + .-...++++|.| +++..+.++.. +.......+.+|+.+++||+|++...    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            3568999999999999988764 1 111368999999 99998877642 22334444668866699999997432    


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHH
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKF  194 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~  194 (235)
                      +      ..+.|+.|+|||||+|++....+ .+.+++.+
T Consensus       161 ~------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~  193 (272)
T PRK11088        161 P------CKAEELARVVKPGGIVITVTPGPRHLFELKGL  193 (272)
T ss_pred             C------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence            1      24689999999999999986442 34444444

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.46  E-value=1.7e-13  Score=123.24  Aligned_cols=128  Identities=16%  Similarity=0.266  Sum_probs=80.9

Q ss_pred             cccccccchHHHHHHHH-HHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHH----Hc
Q 026623           52 TGKSYQEDSKLWKKHVN-AYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIY----ER  124 (235)
Q Consensus        52 ~~~~f~~d~~~W~~~v~-~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~----~R  124 (235)
                      |-..|+.++..-..... .+..++..++-.++.+|||+|||.|+++.+++++ +   .+|+++.+| +....+.    ++
T Consensus        32 S~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~  108 (273)
T PF02353_consen   32 SCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREA  108 (273)
T ss_dssp             S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCS
T ss_pred             CCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhc
Confidence            33345555443233332 3555566666667889999999999999999987 5   479999999 8887654    45


Q ss_pred             CccccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       125 gl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+...+.-.+....-.+.+||.|++-.+|+|+. ..+...++.+++|.|||||.+++..
T Consensus       109 gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  109 GLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             TSSSTEEEEES-GGG---S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CCCCceEEEEeeccccCCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            764322211222222346999999999999994 3478899999999999999999874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.46  E-value=1.6e-13  Score=117.84  Aligned_cols=97  Identities=24%  Similarity=0.342  Sum_probs=74.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCCCCccceeeehhhhc
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ++|||+|||+|.++..+++... ..+++++|.| +++..+.++    |+.   .......+..+ ++++||+|++..+|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FPDTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CCCCCCEeehHHHHH
Confidence            3799999999999998876521 2479999999 888876654    442   22332223333 457999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |+.   +...+|.++.|+|||||++++.+.
T Consensus        79 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       79 HIK---DKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence            985   578999999999999999999863

>PRK06202 hypothetical protein; Provisional

Probab=99.46  E-value=2.5e-13  Score=117.90  Aligned_cols=102  Identities=13%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             CCCceEeeeccccchHHHHHhcC---CCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP---KSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~---~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      .+..+|||+|||+|.++..|.+.   .....+|+++|.+ +|+..+.++..   +......++.+++.+++||+|+|+.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            44679999999999998887641   1123479999999 99998877632   11223334567765689999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |||+++ .++..+|.||.|++|  |.+++.|.
T Consensus       139 lhh~~d-~~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        139 LHHLDD-AEVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             eecCCh-HHHHHHHHHHHHhcC--eeEEEecc
Confidence            999964 246789999999999  66677763

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.46  E-value=2.7e-13  Score=127.13  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=81.0

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--cc-ccccccccCCCCCCCccc
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LI-GIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~-~~~~~~~e~l~~~p~sFD  145 (235)
                      +..++..++..+..+|||+|||+|+++..+++..  ...|+++|.| +++..+.++.  +. ....   ......+++||
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~~~l~~~fD  230 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRL---QDYRDLNGQFD  230 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEE---CchhhcCCCCC
Confidence            4444445555557899999999999999998753  2379999999 9999887763  21 1111   11111258999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|++..+|+|+.. .++..++.++.|+|||||++++.+
T Consensus       231 ~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        231 RIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999999999843 467899999999999999999975

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.46  E-value=9.6e-14  Score=118.93  Aligned_cols=97  Identities=23%  Similarity=0.385  Sum_probs=82.5

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-Cccceeeehhhh
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHANGVF  153 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~~vl  153 (235)
                      .|.+  +.+|||+|||.|.+.++|.+..  .....|++++ +.+..+.+||+.....|.-+.|+.|| ++||.|+.+.+|
T Consensus        10 ~I~p--gsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtL   85 (193)
T PF07021_consen   10 WIEP--GSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTL   85 (193)
T ss_pred             HcCC--CCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence            3544  5799999999999999999853  2468899998 88889999999887788778898777 999999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +++.   .++.+|.||-||   |...|++
T Consensus        86 Q~~~---~P~~vL~EmlRV---gr~~IVs  108 (193)
T PF07021_consen   86 QAVR---RPDEVLEEMLRV---GRRAIVS  108 (193)
T ss_pred             HhHh---HHHHHHHHHHHh---cCeEEEE
Confidence            9985   688999999877   5577777

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00740 methyltransferase, putative

Probab=99.46  E-value=1.2e-13  Score=120.46  Aligned_cols=101  Identities=10%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             CCceEeeeccccchHHHHHhcCC-CceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPK-SWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~-~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|.++..|.+.. .-..+++++|.| +|+..+.++    +.   +..++...+.+++  ..||+|+++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~d~v~~~~  130 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVILNF  130 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC--CCCCEEeeec
Confidence            35689999999999998887641 013479999999 999887665    21   2223333333442  4699999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ++||+.+ .+...+|.++.|+|||||.++++|.
T Consensus       131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence            9999853 3568999999999999999999974

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.44  E-value=7e-13  Score=112.30  Aligned_cols=126  Identities=16%  Similarity=0.298  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc--ccccccc
Q 026623           61 KLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL--IGIYHDW  133 (235)
Q Consensus        61 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl--~~~~~~~  133 (235)
                      ..|++....-..++..+.   ..+|||+|||+|.++..|+.... ...|+++|.+ +|+..+.+    .|+  +..++..
T Consensus        25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d  100 (181)
T TIGR00138        25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR  100 (181)
T ss_pred             HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc
Confidence            455655544332233332   57999999999998887764321 2469999999 78775433    344  2334444


Q ss_pred             ccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc
Q 026623          134 CEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM  198 (235)
Q Consensus       134 ~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~  198 (235)
                      .+.++ .+++||+|+|+. ++      ++..++.++.|+|||||.+++........++..+.+.+
T Consensus       101 ~~~~~-~~~~fD~I~s~~-~~------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~  157 (181)
T TIGR00138       101 AEDFQ-HEEQFDVITSRA-LA------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC  157 (181)
T ss_pred             hhhcc-ccCCccEEEehh-hh------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh
Confidence            45443 358999999976 43      45688999999999999999998776666766666553

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.44  E-value=4.8e-13  Score=115.26  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ..+|||+|||+|.++..|... +  ..+++++|.| ++++.+.++.. +...+..+.. |+.+++||+|+++.+|+|+. 
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-  119 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-  119 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-
Confidence            568999999999999999875 3  2479999999 99998877521 2223333333 54459999999999999984 


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..++..++.||.|++  +++++|.+
T Consensus       120 p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       120 PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            456889999999998  57888875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.43  E-value=3.1e-13  Score=125.16  Aligned_cols=118  Identities=15%  Similarity=0.142  Sum_probs=89.3

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccceeeehhhhcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ...+|||+|||+|.++..+.+. +  ..+++++|.+ +|+..+.++.-   +..++...+.+++.+++||+|+++.+|+|
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~  190 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEY  190 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence            3568999999999998887653 2  2479999999 99998877531   33345555667866699999999999998


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEEeCh--H---------------HHHHHHHHHhccCceeE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFRDEV--D---------------ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--~---------------~~~~i~~~~~~~~W~~~  203 (235)
                      ++   +...+|+|+.|+|||||.+++.+..  .               ..+++..++++..++..
T Consensus       191 ~~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V  252 (340)
T PLN02490        191 WP---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV  252 (340)
T ss_pred             CC---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence            86   5689999999999999999886421  0               12455666777777654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.41  E-value=1.2e-12  Score=110.84  Aligned_cols=104  Identities=20%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccccccccCCCCCCCccceeeehh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +...+..+|||+|||+|.++..+.....-...++++|.+ .++..+.++..    +...+.....+++.+++||+|+++.
T Consensus        35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~  114 (223)
T TIGR01934        35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF  114 (223)
T ss_pred             hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence            333356799999999999999888753211479999998 88887766542    2233333445664458999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++|..   ++..+|.++.++|||||++++.+
T Consensus       115 ~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       115 GLRNVT---DIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             eeCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence            998874   68899999999999999999876

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.40  E-value=6.8e-13  Score=126.45  Aligned_cols=107  Identities=19%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Cc---ccccccccc--CCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GL---IGIYHDWCE--GFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl---~~~~~~~~e--~l~~~p~sFD  145 (235)
                      ++..+......+|||+|||+|.++..|++..   ..|+++|.+ +++..+.++ +.   +..+....+  .+++.+++||
T Consensus        29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence            3444444445689999999999999999764   379999999 898876543 21   222222222  3554458999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|+.+++|+++ .++..+|.++.|+|||||++++.|
T Consensus       106 ~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        106 LIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             EEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999999999964 347899999999999999999986

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.40  E-value=4.8e-12  Score=105.77  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.++..+...+.   .|+++|.+ +++..+.++    ++ +..++..+  +...+++||+|+++..+++
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDL--FKGVRGKFDVILFNPPYLP   94 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc--ccccCCcccEEEECCCCCC
Confidence            46899999999999999998753   69999999 888876553    22 11222221  1223479999999988876


Q ss_pred             CCCCC------------------ChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEeec
Q 026623          156 YENTC------------------KPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       156 ~~~~~------------------~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~~~  206 (235)
                      ..+..                  .+..+|.++.|+|||||.+++.+.... ...+.++++...+......
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~  164 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA  164 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence            53210                  146789999999999999999875543 5566677777777766543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK06922 hypothetical protein; Provisional

Probab=99.39  E-value=5e-13  Score=132.07  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=78.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c-cccccccccCCC--CCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L-IGIYHDWCEGFS--TYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l-~~~~~~~~e~l~--~~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.++..|+.... ..+++++|.| .|++.+.++.    . +..++..+..+|  +.+++||+|+++.+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v  496 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI  496 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence            457999999999999888876421 3589999999 8999877652    1 122334455566  44599999999999


Q ss_pred             hccCC----------CCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          153 FSLYE----------NTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       153 l~h~~----------~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +||+.          +..++..+|+|+.|+|||||.+++.|.
T Consensus       497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            98752          123578999999999999999999973

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.39  E-value=1.1e-12  Score=112.56  Aligned_cols=122  Identities=14%  Similarity=0.092  Sum_probs=86.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccc-cCCC--CCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWC-EGFS--TYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~-e~l~--~~p~sFDlV~a~  150 (235)
                      ...+|||+|||+|.++..|++... ..+|+++|.+ +++..+.++    ++  +..++..+ +.++  +.+++||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            467999999999999999976521 2479999999 888876553    33  22344444 5555  345899999986


Q ss_pred             hhhccCC-----CCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeE
Q 026623          151 GVFSLYE-----NTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       151 ~vl~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~  203 (235)
                      .......     .......+|.++.|+|||||.|++.. .......+.....+-.|.+.
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence            5442111     11235789999999999999999975 55566666666666667766

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.39  E-value=1.2e-12  Score=112.59  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=92.0

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccccccccCCC-CCC-Cccceeeeh
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIYHDWCEGFS-TYP-RTYDLIHAN  150 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~~~~~e~l~-~~p-~sFDlV~a~  150 (235)
                      .|....++++||+|||.|.|+..|+.+   .-.++.+|++ ..+..+.+|-  +..+ .-....+| +.| ++||||+++
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V-~~~~~dvp~~~P~~~FDLIV~S  113 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHV-EWIQADVPEFWPEGRFDLIVLS  113 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSE-EEEES-TTT---SS-EEEEEEE
T ss_pred             hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCe-EEEECcCCCCCCCCCeeEEEEe
Confidence            478888999999999999999999986   4679999999 8999888873  2221 00112344 334 999999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH----------HHHHHHHHHhccCceeEeecCCCCCCCCceEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD----------ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~----------~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~  220 (235)
                      -|++++.+..++..++..+...|+|||.+|+....+          -.+.|.+++...-=++....-. |....|.-|++
T Consensus       114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  192 (201)
T PF05401_consen  114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECR-GGSPNEDCLLA  192 (201)
T ss_dssp             S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE--SSTTSEEEEE
T ss_pred             hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEc-CCCCCCceEee
Confidence            999999655568899999999999999999986332          1233445544443344322222 22245666666


Q ss_pred             E
Q 026623          221 V  221 (235)
Q Consensus       221 ~  221 (235)
                      +
T Consensus       193 ~  193 (201)
T PF05401_consen  193 R  193 (201)
T ss_dssp             E
T ss_pred             e
Confidence            4

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.38  E-value=1.6e-13  Score=120.51  Aligned_cols=140  Identities=23%  Similarity=0.306  Sum_probs=101.2

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCC--CCCCccceeeehhhh
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFS--TYPRTYDLIHANGVF  153 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~--~~p~sFDlV~a~~vl  153 (235)
                      ..+..+++||+|||||-++.+|++.   +..++++|+| +||..+.++|+-. .++.....|.  .-++.||+|.+..||
T Consensus       122 ~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl  198 (287)
T COG4976         122 DLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL  198 (287)
T ss_pred             cCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence            4566899999999999999999875   3469999999 9999999999733 2333223232  345899999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-----h--------H---HHHHHHHHHhccCceeE-eecC----CCCCC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE-----V--------D---ALNKVRKFAEGMRWDTK-MMDH----EDGPL  212 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-----~--------~---~~~~i~~~~~~~~W~~~-~~~~----~~~~~  212 (235)
                      .++-   +++.++.-..+.|.|||.|++|-.     -        .   .-..+.....+-..++. +.++    +.+..
T Consensus       199 ~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~p  275 (287)
T COG4976         199 PYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEP  275 (287)
T ss_pred             Hhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCC
Confidence            9985   789999999999999999999931     0        0   02346666666666654 2222    22222


Q ss_pred             CCceEEEEEec
Q 026623          213 MPEKILIAVKQ  223 (235)
Q Consensus       213 ~~e~~l~~~k~  223 (235)
                      .+..+.|++|+
T Consensus       276 v~G~L~iark~  286 (287)
T COG4976         276 VPGILVIARKK  286 (287)
T ss_pred             CCCceEEEecC
Confidence            45566777664

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.38  E-value=2.6e-12  Score=111.01  Aligned_cols=136  Identities=10%  Similarity=0.074  Sum_probs=81.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCC--------CCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--------TYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--------~~p~sFDlV~a~~v  152 (235)
                      +..+|||+|||+|.++..+++...-...|+++|.+.|...   .+ +..++...+..+        +.+.+||+|+|+..
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~  126 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VG-VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA  126 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CC-cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence            3568999999999999888775211247999999864321   12 222333333332        23489999999876


Q ss_pred             hccCCCCC-C-------hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc--CceeE-eecCC-CCCCCCceEEEE
Q 026623          153 FSLYENTC-K-------PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM--RWDTK-MMDHE-DGPLMPEKILIA  220 (235)
Q Consensus       153 l~h~~~~~-~-------~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~--~W~~~-~~~~~-~~~~~~e~~l~~  220 (235)
                      .+...+.. +       .+.+|.++.|+|||||.|++.....  +.+..++..+  +|... ..... .-....|.+++|
T Consensus       127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~  204 (209)
T PRK11188        127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA  204 (209)
T ss_pred             CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence            65432110 1       2579999999999999999965321  0111222222  34332 22111 222268999999


Q ss_pred             Ee
Q 026623          221 VK  222 (235)
Q Consensus       221 ~k  222 (235)
                      +.
T Consensus       205 ~~  206 (209)
T PRK11188        205 TG  206 (209)
T ss_pred             ec
Confidence            63

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.36  E-value=3.8e-12  Score=108.86  Aligned_cols=100  Identities=22%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      +..+|||+|||+|.++..+.....-..+++++|.+ .++..+.++-    +   +..++...+.+++.+++||+|+++.+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            45789999999999998887653212479999999 8888776652    1   22333334445544589999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++|..   ++..+|.++.++|+|||.+++.+
T Consensus       131 l~~~~---~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        131 LRNVP---DIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             cccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence            98774   67899999999999999999875

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.34  E-value=1.5e-12  Score=116.15  Aligned_cols=96  Identities=17%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cc----cccccccCCCCCCCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IG----IYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~----~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +++|||+|||+|-+...|+..+   .+|+++|.+ +|+.+|.+..-     .+    .+.-.|+.+--....||.|+|+.
T Consensus        90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence            4789999999999999999887   579999999 89998877621     11    01111122221226699999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++|+.   ++..++.-+-+.|||||.++|++
T Consensus       167 vleHV~---dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  167 VLEHVK---DPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             HHHHHh---CHHHHHHHHHHHhCCCCceEeee
Confidence            999995   78999999999999999999996

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.34  E-value=3.3e-12  Score=107.68  Aligned_cols=137  Identities=11%  Similarity=0.072  Sum_probs=79.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCC--------CCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--------TYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--------~~p~sFDlV~a~~v  152 (235)
                      +..+|||+|||+|+++..+..+..-...|+++|.+.+..   ..++ ..+.......+        +.+++||+|+++..
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~---~~~i-~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~  107 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP---IENV-DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA  107 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc---CCCc-eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence            457999999999999888876421123689999985431   1122 12211112111        22478999998653


Q ss_pred             h--------ccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeEe-ecCCCCCCCCceEEEEE
Q 026623          153 F--------SLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTKM-MDHEDGPLMPEKILIAV  221 (235)
Q Consensus       153 l--------~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~~-~~~~~~~~~~e~~l~~~  221 (235)
                      .        .|+...+.++.+|.++.|+|||||.+++.. ..+.+.++-..++..-|.+.. .+.-......|++++|.
T Consensus       108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (188)
T TIGR00438       108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK  186 (188)
T ss_pred             CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence            2        121111124689999999999999999953 222222222222222344443 23333444689999994

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.33  E-value=4e-12  Score=107.68  Aligned_cols=97  Identities=25%  Similarity=0.293  Sum_probs=70.9

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-CCCCccceeeeh
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-TYPRTYDLIHAN  150 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-~~p~sFDlV~a~  150 (235)
                      +.+.+..  ..+|||+|||+|.++..|.+...  .+++++|.+ +++..+.++++.-...+..+.++ +.+++||+|+|+
T Consensus         7 i~~~i~~--~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081         7 ILNLIPP--GSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             HHHhcCC--CCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            3434443  45899999999999999976432  357899999 88888877764322222223354 334899999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCC
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPE  176 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPG  176 (235)
                      .+|+|++   ++..+|+||.|+++++
T Consensus        83 ~~l~~~~---d~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        83 QTLQATR---NPEEILDEMLRVGRHA  105 (194)
T ss_pred             hHhHcCc---CHHHHHHHHHHhCCeE
Confidence            9999985   6889999999987753

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.33  E-value=4.4e-12  Score=108.97  Aligned_cols=97  Identities=23%  Similarity=0.310  Sum_probs=71.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCcc-ccccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGLI-GIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      +..++||+|||.|.-+.+|+++|   .+|+++|.| ..++    ++.++++. .......+... +++.||+|++..||+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~~~yD~I~st~v~~  105 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FPEEYDFIVSTVVFM  105 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEEEEESSGG
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-ccCCcCEEEEEEEec
Confidence            45699999999999999999997   369999998 5665    34455663 22222222233 458999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |++ +..+..++..|..-|+|||++++.
T Consensus       106 fL~-~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  106 FLQ-RELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             GS--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCC-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence            984 567889999999999999998884

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.32  E-value=6.7e-12  Score=107.94  Aligned_cols=97  Identities=12%  Similarity=0.146  Sum_probs=74.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-------cccccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-------IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-------~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.++..|++.+   ..|+++|.+ +|+..+.++..       +...+..++.   .+++||+|++..+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~ii~~~~  128 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS---LCGEFDIVVCMDV  128 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh---CCCCcCEEEEhhH
Confidence            46799999999999999998764   369999999 89988777531       1222222222   2389999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ++|++. .++..++.++.|+++||+++.+...
T Consensus       129 l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~  159 (219)
T TIGR02021       129 LIHYPA-SDMAKALGHLASLTKERVIFTFAPK  159 (219)
T ss_pred             HHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence            998853 4678999999999998888777643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.32  E-value=1.4e-11  Score=108.74  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT  159 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~  159 (235)
                      ...+|||+|||+|.++.++...+.  ..|+++|.+ .++..+.++.-.....+.. .++..+.+||+|+|+...+     
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~-~~~~~~~~fD~Vvani~~~-----  190 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV-YLPQGDLKADVIVANILAN-----  190 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE-EEccCCCCcCEEEEcCcHH-----
Confidence            357999999999999888877653  359999999 8888776652111110000 1221123799999975432     


Q ss_pred             CChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeec
Q 026623          160 CKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~  206 (235)
                       .+..++.++.|+|||||+++++... +....+...+++..+.+....
T Consensus       191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence             3468899999999999999999754 345567777788888776443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.31  E-value=8.1e-12  Score=112.88  Aligned_cols=129  Identities=17%  Similarity=0.281  Sum_probs=92.0

Q ss_pred             cccccccchH-HHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcC
Q 026623           52 TGKSYQEDSK-LWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERG  125 (235)
Q Consensus        52 ~~~~f~~d~~-~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rg  125 (235)
                      +-+.|+..+. .=-.+...+..++..++-.++.+|||+|||-|+++.++++.-  ..+|+++++| +++..+.    ++|
T Consensus        42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g  119 (283)
T COG2230          42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG  119 (283)
T ss_pred             eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC
Confidence            4444555542 211222334445556666678999999999999999998862  2479999999 8888644    457


Q ss_pred             ccccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          126 LIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       126 l~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +...++-.-+....+++.||-|++-.+|+|+. ..+...++.-++++|+|||.+++-.
T Consensus       120 l~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         120 LEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             CCcccEEEeccccccccccceeeehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEE
Confidence            75332221233444556699999999999995 3578999999999999999998874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.31  E-value=9.5e-12  Score=112.21  Aligned_cols=114  Identities=16%  Similarity=0.107  Sum_probs=80.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccccccccc-CCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCE-GFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e-~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.++.+++..+.  ..|+++|.+ .+++.+.++    ++...+...+. ..+..++.||+|+|+.+.+ 
T Consensus       160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-  236 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-  236 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence            47999999999999888877653  479999999 888877664    22111111112 1233358999999986653 


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEe
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~  204 (235)
                           .+..++.++.|+|||||+++++... +....+.+.+++. |++..
T Consensus       237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~  280 (288)
T TIGR00406       237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE  280 (288)
T ss_pred             -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence                 3468999999999999999999743 3355666666665 76653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.31  E-value=7.6e-12  Score=109.20  Aligned_cols=147  Identities=18%  Similarity=0.244  Sum_probs=106.8

Q ss_pred             HHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccCCCCCCCccc
Q 026623           72 KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        72 ~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~l~~~p~sFD  145 (235)
                      .++.++.....++|.|+|||+|+.++.|..+-. ...|+++|.| +||..+++|..     .+.++.||     .+..+|
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-----p~~~~d   94 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-----PEQPTD   94 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-----CCCccc
Confidence            366677777889999999999999999988621 3579999999 99999988875     23455555     248999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--eChH--HHHHHHHHHhccCceeEeecCC--CCC--------
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--DEVD--ALNKVRKFAEGMRWDTKMMDHE--DGP--------  211 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d~~~--~~~~i~~~~~~~~W~~~~~~~~--~~~--------  211 (235)
                      ++++|.+|+.++   +-..+|...---|.|||.+.+.  |+.+  .-..|.+.++..-|.....+..  ..+        
T Consensus        95 llfaNAvlqWlp---dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy  171 (257)
T COG4106          95 LLFANAVLQWLP---DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY  171 (257)
T ss_pred             hhhhhhhhhhcc---ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence            999999999997   5578888899999999999998  3332  2335566676666654432210  000        


Q ss_pred             ----CCCceEEEEEeccccC
Q 026623          212 ----LMPEKILIAVKQYWVG  227 (235)
Q Consensus       212 ----~~~e~~l~~~k~~w~~  227 (235)
                          ....+|=|+.+.|-.+
T Consensus       172 ~lLa~~~~rvDiW~T~Y~h~  191 (257)
T COG4106         172 ELLAPLACRVDIWHTTYYHQ  191 (257)
T ss_pred             HHhCcccceeeeeeeecccc
Confidence                1345666777777655

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=9.1e-12  Score=113.43  Aligned_cols=107  Identities=16%  Similarity=0.256  Sum_probs=80.8

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc--ccHHHHHHcCccc---ccc---ccccCCCCCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK--NTLGVIYERGLIG---IYH---DWCEGFSTYP  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s--~~L~~~~~Rgl~~---~~~---~~~e~l~~~p  141 (235)
                      +.++.+.|.+-.+++|||||||.|.++-.|...+.  ..|+++|.+  -.+++.+-+.+++   .++   .--|.+|. .
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~  180 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L  180 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence            34455666666789999999999999989988773  469999987  3444433332221   111   01255665 6


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ++||+|+|-.||.|.+   ++...|.++...|||||.+|+-
T Consensus       181 ~~FDtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  181 GAFDTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             CCcCEEEEeeehhccC---CHHHHHHHHHHhhCCCCEEEEE
Confidence            9999999999999976   7899999999999999999976

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.29  E-value=2.5e-11  Score=102.10  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=80.8

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +......+|||+|||+|.++..++.... ...|+++|.+ .+++.+.++    ++.  ..+....  ....++.||+|++
T Consensus        27 l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~~D~v~~  103 (187)
T PRK08287         27 LELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGKADAIFI  103 (187)
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcCCCEEEE
Confidence            3333567999999999999988876521 2479999998 888876543    321  1121111  1123578999998


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCce
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWD  201 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~  201 (235)
                      +....      .+..++.++.|+|||||.+++.. ..+...++.+++++..+.
T Consensus       104 ~~~~~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287        104 GGSGG------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS  150 (187)
T ss_pred             CCCcc------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence            76543      45689999999999999999986 334455666777777764

>PRK04266 fibrillarin; Provisional

Probab=99.28  E-value=6.3e-11  Score=103.92  Aligned_cols=140  Identities=13%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCccccccccccCC---CCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGLIGIYHDWCEGF---STYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl~~~~~~~~e~l---~~~p~sFDlV~  148 (235)
                      +...+..+|||+|||+|.++..|++.-. ...|+++|.+ .|++.+.    ++..+..+.......   ...+++||+|+
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            3434467999999999999999987521 2369999999 8887433    222222222222211   11246799998


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEE------EeCh----HHHHHHHHHHhccCceeE-eecCCCCCCCCceE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIF------RDEV----DALNKVRKFAEGMRWDTK-MMDHEDGPLMPEKI  217 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii------~d~~----~~~~~i~~~~~~~~W~~~-~~~~~~~~~~~e~~  217 (235)
                      +.     ..+......+|.|+.|+|||||.++|      .|..    .......+.+++-..+.. ..+..... .++-.
T Consensus       147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~-~~h~~  220 (226)
T PRK04266        147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYH-KDHAA  220 (226)
T ss_pred             EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCc-CCeEE
Confidence            53     22111224568999999999999999      3321    112223355554455543 33322111 34566


Q ss_pred             EEEEec
Q 026623          218 LIAVKQ  223 (235)
Q Consensus       218 l~~~k~  223 (235)
                      ++.+|+
T Consensus       221 ~v~~~~  226 (226)
T PRK04266        221 VVARKK  226 (226)
T ss_pred             EEEEcC
Confidence            666653

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.28  E-value=1.9e-11  Score=94.20  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=69.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccC-CCCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      +......+|||+|||+|.++..+++... ...|+++|.+ .+++.+.+.    ++.  ..+....+. ++..+++||+|+
T Consensus        15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~   93 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVF   93 (124)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEE
Confidence            4433456999999999999999987521 2579999999 888765432    332  111111111 232347999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +....+      ....++.++.|+|||||+|++.
T Consensus        94 ~~~~~~------~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        94 IGGSGG------LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             ECCcch------hHHHHHHHHHHHcCCCCEEEEE
Confidence            866543      3468999999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14968 putative methyltransferase; Provisional

Probab=99.26  E-value=6.7e-11  Score=97.97  Aligned_cols=136  Identities=18%  Similarity=0.236  Sum_probs=87.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc----c-ccccccccCCCCCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL----I-GIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl----~-~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+|||+|||+|.++..|+..+   .+++++|.+ +++..+.++    ++    + -...|+.+.  +.+++||+|+++
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n   97 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFN   97 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEEC
Confidence            45689999999999999998873   579999999 888876433    22    1 122333332  223689999987


Q ss_pred             hhhccCCC------------------CCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCCCCC
Q 026623          151 GVFSLYEN------------------TCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHEDGP  211 (235)
Q Consensus       151 ~vl~h~~~------------------~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~~~~  211 (235)
                      ..+.+..+                  ...+..++.++.|+|||||.+++.... .....+..++....|++.......-.
T Consensus        98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  177 (188)
T PRK14968         98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP  177 (188)
T ss_pred             CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence            65532100                  112467899999999999998876432 12445677777777876543223233


Q ss_pred             CCCceEEEEE
Q 026623          212 LMPEKILIAV  221 (235)
Q Consensus       212 ~~~e~~l~~~  221 (235)
                      ++.=.++..+
T Consensus       178 ~~~~~~~~~~  187 (188)
T PRK14968        178 FEELIVLELV  187 (188)
T ss_pred             CceEEEEEEe
Confidence            2333344444

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.25  E-value=1.8e-11  Score=104.14  Aligned_cols=120  Identities=13%  Similarity=0.188  Sum_probs=78.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC--CCC-Cccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS--TYP-RTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~--~~p-~sFDlV~a~~  151 (235)
                      ...|||+|||+|.++..|+.... ..+++++|.+ .++..+.++    |+  +..++..+..++  +++ ++||.|+++.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            46899999999999999987532 3589999999 888866543    33  223333333332  244 6999999865


Q ss_pred             hhccC-----CCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHH-HhccCcee
Q 026623          152 VFSLY-----ENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKF-AEGMRWDT  202 (235)
Q Consensus       152 vl~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~-~~~~~W~~  202 (235)
                      -..+.     +.+.....+|.++.|+|||||.|++.. ..+....+... ...-+|+.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence            43221     122234689999999999999999874 44444444333 33334543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.25  E-value=5.4e-11  Score=102.03  Aligned_cols=99  Identities=17%  Similarity=0.225  Sum_probs=72.0

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCCCccceeeehhhhc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      .+..+|||+|||+|.++..|.+.+   ..++++|.+ +++..+.++    ++...++-....++..+++||+|++..+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~  138 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence            345799999999999999998765   359999999 899887665    221111111123554558999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+++ .++..++.++.|++++|+.+.+.
T Consensus       139 ~~~~-~~~~~~l~~l~~~~~~~~~i~~~  165 (230)
T PRK07580        139 HYPQ-EDAARMLAHLASLTRGSLIFTFA  165 (230)
T ss_pred             cCCH-HHHHHHHHHHHhhcCCeEEEEEC
Confidence            8753 46789999999988665554443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.23  E-value=2.9e-11  Score=109.24  Aligned_cols=103  Identities=14%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHH----cCccc---cccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE----RGLIG---IYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~----Rgl~~---~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +...+..+|||+|||+|.++..+.++.. ..+++.+|.+.+++.+.+    .|+..   .+.......+ +| .+|+|++
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~-~~D~v~~  221 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP-EADAVLF  221 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-CC-CCCEEEe
Confidence            3444568999999999999998887532 247899998877776543    35422   2222211112 23 4799999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.++|++.+ .....+|+++.|.|||||.++|.|
T Consensus       222 ~~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       222 CRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EhhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999988742 345789999999999999999997

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.23  E-value=2.8e-11  Score=103.56  Aligned_cols=97  Identities=20%  Similarity=0.298  Sum_probs=74.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCC-CCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTY-PRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~-p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.++..+.+.+   ..++++|.+ .++..+.++    ++  +.......+.++.. +++||+|+++.++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            5689999999999999888754   359999999 787766553    22  22223333334433 3899999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +|..   ++..+|.++.++|+|||.+++++.
T Consensus       123 ~~~~---~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       123 EHVP---DPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence            9885   678999999999999999999863

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.22  E-value=7.5e-11  Score=109.27  Aligned_cols=132  Identities=16%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccccccccccCCCCCCCccceeeehhhhccC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                      ..+|||+|||+|.++..+.++.. ...|+++|.+ .++..+.+    .++...+. +.+.++..++.||+|+|+--||+.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence            34799999999999999987632 2469999999 88886654    23322221 122234345899999999999753


Q ss_pred             CC--CCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          157 EN--TCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       157 ~~--~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      ..  ....+.++.++.|.|||||.++|..+.  ++-..+++.....  ++.. +.     .+=+|+-++|.
T Consensus       275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~~  337 (342)
T PRK09489        275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIMT  337 (342)
T ss_pred             ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEcc
Confidence            21  123579999999999999999887643  2333444443332  2221 11     35567777653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.22  E-value=3e-11  Score=103.68  Aligned_cols=103  Identities=18%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCcc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sF  144 (235)
                      +++.+...+..+|||+|||+|.+++.|.+.-.-...|+++|.+ +++..+.++    |+   +..++..+.......++|
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~f  143 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF  143 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCc
Confidence            3444544456799999999999998887531001369999999 888766543    43   223333333222234799


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |+|+++..+.|++         .|+.|+|||||.+++...
T Consensus       144 D~Ii~~~~~~~~~---------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        144 DAIIVTAAASTIP---------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             cEEEEccCcchhh---------HHHHHhcCcCcEEEEEEc
Confidence            9999988876553         478899999999998653

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.22  E-value=4.9e-11  Score=103.57  Aligned_cols=116  Identities=21%  Similarity=0.262  Sum_probs=83.1

Q ss_pred             HHHHHHHHH-hh----hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----C-c--ccccc
Q 026623           65 KHVNAYKKM-NS----LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----G-L--IGIYH  131 (235)
Q Consensus        65 ~~v~~y~~~-l~----~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----g-l--~~~~~  131 (235)
                      +.+++|++. +.    .++......||.+|||||.--.+.-..+  .-.|+.+|.+ +|-.++..+    . +  ...++
T Consensus        55 e~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvv  132 (252)
T KOG4300|consen   55 EIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVV  132 (252)
T ss_pred             HHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEe
Confidence            344556652 22    2344444578999999997655555443  2469999999 777764332    1 1  22457


Q ss_pred             ccccCCC-CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          132 DWCEGFS-TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       132 ~~~e~l~-~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ...|.+| ..+.|+|.|+|..+|.-.   .++++.|.|+.|+|||||.+++-++.
T Consensus       133 a~ge~l~~l~d~s~DtVV~TlvLCSv---e~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  133 ADGENLPQLADGSYDTVVCTLVLCSV---EDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             echhcCcccccCCeeeEEEEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            7778898 455999999999999744   48899999999999999999999854

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.21  E-value=1.3e-10  Score=98.86  Aligned_cols=146  Identities=14%  Similarity=0.242  Sum_probs=90.5

Q ss_pred             ccccccccc--chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--
Q 026623           50 GVTGKSYQE--DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--  124 (235)
Q Consensus        50 g~~~~~f~~--d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--  124 (235)
                      |.....|..  +...++..++.-  .+..++.....+|||+|||+|.++..++..-.....|+++|.+ .+++.+.++  
T Consensus         9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~   86 (198)
T PRK00377          9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE   86 (198)
T ss_pred             CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence            333444544  223555545321  2333444556799999999999988775431112479999998 888876543  


Q ss_pred             --Ccc---ccccccc-cCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhc
Q 026623          125 --GLI---GIYHDWC-EGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEG  197 (235)
Q Consensus       125 --gl~---~~~~~~~-e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~  197 (235)
                        |+.   ..+.... +.++..++.||+|++...      ..++..++.++.|+|||||.+++.. ..+.+.++...++.
T Consensus        87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (198)
T PRK00377         87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN  160 (198)
T ss_pred             HhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence              421   1222222 223333478999998432      2367899999999999999999843 33445566666666


Q ss_pred             cCceeE
Q 026623          198 MRWDTK  203 (235)
Q Consensus       198 ~~W~~~  203 (235)
                      ..++..
T Consensus       161 ~g~~~~  166 (198)
T PRK00377        161 IGFNLE  166 (198)
T ss_pred             cCCCeE
Confidence            665544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.20  E-value=5.6e-11  Score=102.70  Aligned_cols=100  Identities=17%  Similarity=0.289  Sum_probs=75.3

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCC-CCCCccceeeehh
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFS-TYPRTYDLIHANG  151 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~-~~p~sFDlV~a~~  151 (235)
                      ..+..+|||+|||+|.++..+.+.+   .+++++|.+ .++..+.++    ++. ...+...+.++ ..+++||+|+++.
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~  122 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME  122 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence            3346789999999999999998764   469999999 777766654    221 11121112233 2348999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +++|..   +...+|.++.|+|+|||.+++.+.
T Consensus       123 ~l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        123 MLEHVP---DPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             HhhccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence            999885   678999999999999999999863

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.20  E-value=1.4e-10  Score=101.60  Aligned_cols=141  Identities=13%  Similarity=0.131  Sum_probs=96.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccc--ccccccCCCCCCCccceeeehhhh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGI--YHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~--~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +.....+-|||||||+|--+..|.+.+   .-.+++|+| .||..+.+|-+-|.  ..|--|.+||-|+|||-|++-..+
T Consensus        46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv  122 (270)
T KOG1541|consen   46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV  122 (270)
T ss_pred             CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence            444457789999999999999998876   347899999 99999998766543  345558899999999999986666


Q ss_pred             ccC----CCCCC----hHHHHHHHhhhhcCCcEEEEEeCh---HHHHHHHHHHhccCcee-EeecCCCCCCCCceEEEE
Q 026623          154 SLY----ENTCK----PEDILLEMDRILRPEGAVIFRDEV---DALNKVRKFAEGMRWDT-KMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       154 ~h~----~~~~~----~~~~L~Em~RVLRPGG~lii~d~~---~~~~~i~~~~~~~~W~~-~~~~~~~~~~~~e~~l~~  220 (235)
                      ..+    +...+    +..++.-++.+|++|+..++.--.   +.++.|..-+..--+.- ...|.+....++.-+||.
T Consensus       123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL  201 (270)
T KOG1541|consen  123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL  201 (270)
T ss_pred             eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence            532    11111    336778899999999999999433   33444444333322221 134554444455566665

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.19  E-value=1.4e-10  Score=108.93  Aligned_cols=138  Identities=14%  Similarity=0.139  Sum_probs=87.8

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-----cccccccccCCCCC-CC
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-----IGIYHDWCEGFSTY-PR  142 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-----~~~~~~~~e~l~~~-p~  142 (235)
                      ++.+......+|||+|||+|.++..+..+.. ...|+++|.| .+++.+.+.    +.     +..+.+  ..+... +.
T Consensus       221 L~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~  297 (378)
T PRK15001        221 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPF  297 (378)
T ss_pred             HHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCC
Confidence            4444443346899999999999999987532 3579999999 888876543    21     122222  223333 36


Q ss_pred             ccceeeehhhhccCC--CCCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHHhccCceeEeecCCCCCCCCceEE
Q 026623          143 TYDLIHANGVFSLYE--NTCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKIL  218 (235)
Q Consensus       143 sFDlV~a~~vl~h~~--~~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l  218 (235)
                      +||+|+|+--||...  ......+++.+..|+|||||.+++.-+.  ++...++++..    .+...    +...+=+|+
T Consensus       298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~v----a~~~kf~vl  369 (378)
T PRK15001        298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTI----ATNNKFVVL  369 (378)
T ss_pred             CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEE----ccCCCEEEE
Confidence            899999998876421  1112458899999999999999998543  34445555332    22222    112355677


Q ss_pred             EEEe
Q 026623          219 IAVK  222 (235)
Q Consensus       219 ~~~k  222 (235)
                      -++|
T Consensus       370 ~a~k  373 (378)
T PRK15001        370 KAVK  373 (378)
T ss_pred             EEEe
Confidence            7776

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.17  E-value=1.1e-10  Score=101.32  Aligned_cols=97  Identities=12%  Similarity=0.018  Sum_probs=70.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH-HHcCcc-----------------ccccccccCCCCC-C
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI-YERGLI-----------------GIYHDWCEGFSTY-P  141 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~-~~Rgl~-----------------~~~~~~~e~l~~~-p  141 (235)
                      ..+|||+|||.|..+.+|+++|   .+|+++|+| ..++.+ .+.|+.                 ..+......++.. .
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            4699999999999999999986   379999999 777754 333432                 1122111222322 2


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .+||+|....+|+|++ ......++..|.|.|||||++++.
T Consensus       112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence            6799999999999985 345578999999999999974443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.16  E-value=4.7e-11  Score=98.81  Aligned_cols=72  Identities=17%  Similarity=0.074  Sum_probs=60.3

Q ss_pred             eecCcc-ccHHHHHHcCc---------cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEE
Q 026623          110 VPTTAK-NTLGVIYERGL---------IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAV  179 (235)
Q Consensus       110 ~~~D~s-~~L~~~~~Rgl---------~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~l  179 (235)
                      +++|.| +||+.+.+|.-         +..++..++.+|+.+++||+|++..+++|++   +...+|+|++|+|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence            478999 99999865421         3455677788997679999999999999885   7789999999999999999


Q ss_pred             EEEeC
Q 026623          180 IFRDE  184 (235)
Q Consensus       180 ii~d~  184 (235)
                      +|.|.
T Consensus        78 ~i~d~   82 (160)
T PLN02232         78 SILDF   82 (160)
T ss_pred             EEEEC
Confidence            99974

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.12  E-value=2.1e-10  Score=98.83  Aligned_cols=102  Identities=19%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFD  145 (235)
                      ++..+...+..+|||+|||+|.+++.|++...-...|+++|.+ ++++.+.++    |+  +...+............||
T Consensus        69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD  148 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYD  148 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCC
Confidence            3444444557899999999999999988753212359999998 888776554    43  2223322222221237899


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+++....+         +..++.+.|+|||++++.-
T Consensus       149 ~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       149 RIYVTAAGPK---------IPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             EEEEcCCccc---------ccHHHHHhcCcCcEEEEEE
Confidence            9998665543         3456789999999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.11  E-value=2.2e-10  Score=98.95  Aligned_cols=102  Identities=15%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFD  145 (235)
                      ++..+...+..+|||+|||+|.+++.|+....-...|+++|.+ ++++.+.++    |+  +...+..+.......+.||
T Consensus        68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD  147 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYD  147 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcC
Confidence            4444444557899999999999998887642112479999999 888876654    33  2233333322222238999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+++..++++         ..++.+.|||||.+++--
T Consensus       148 ~I~~~~~~~~~---------~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        148 RIYVTAAGPDI---------PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             EEEECCCcccc---------hHHHHHhhCCCcEEEEEE
Confidence            99997766443         246677899999999864

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.11  E-value=7.8e-11  Score=104.13  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=76.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc-----cccccCCCCC--CCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY-----HDWCEGFSTY--PRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~-----~~~~e~l~~~--p~sFDlV~a~~vl  153 (235)
                      -+.++|+|||+|--+..++...   -+|+++|.| .||+++...-.+...     ....|..++.  ++|.|+|+|...+
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            4489999999994444444443   379999999 999987554322111     1111223333  7999999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCc-EEEEE---eChHHHHHHHHHHhccCce
Q 026623          154 SLYENTCKPEDILLEMDRILRPEG-AVIFR---DEVDALNKVRKFAEGMRWD  201 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG-~lii~---d~~~~~~~i~~~~~~~~W~  201 (235)
                      |    +++++.+++++.|||||.| ++.+=   |......++..+..+++|.
T Consensus       111 H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~  158 (261)
T KOG3010|consen  111 H----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS  158 (261)
T ss_pred             H----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence            5    5699999999999999977 43332   3222345556666666664

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.11  E-value=1.3e-09  Score=96.12  Aligned_cols=136  Identities=21%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---Cc---ccccc-ccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---GL---IGIYH-DWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---gl---~~~~~-~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      +..+|||+|||+|.++..|+.... ...++++|.+ .++..+.+.   +.   +..++ |+.+.+  .+++||+|+++--
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npP  184 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--PGGRFDLIVSNPP  184 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--CCCceeEEEECCC
Confidence            456899999999999999987521 2479999999 888876654   22   11222 221211  2479999998522


Q ss_pred             h------c--------cCCC---------CCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCce-eEeecCC
Q 026623          153 F------S--------LYEN---------TCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWD-TKMMDHE  208 (235)
Q Consensus       153 l------~--------h~~~---------~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~-~~~~~~~  208 (235)
                      +      +        |.+.         ...+..++.++.++|||||++++.-.......+..++++..+. +..+  .
T Consensus       185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~--~  262 (275)
T PRK09328        185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR--K  262 (275)
T ss_pred             cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe--c
Confidence            1      1        1100         0113578899999999999999976554455677777665564 3332  1


Q ss_pred             CCCCCCceEEEEEe
Q 026623          209 DGPLMPEKILIAVK  222 (235)
Q Consensus       209 ~~~~~~e~~l~~~k  222 (235)
                      + -.+.+++++++|
T Consensus       263 d-~~~~~r~~~~~~  275 (275)
T PRK09328        263 D-LAGRDRVVLGRR  275 (275)
T ss_pred             C-CCCCceEEEEEC
Confidence            1 226788988865

>PLN03075 nicotianamine synthase; Provisional

Probab=99.10  E-value=1.2e-09  Score=99.52  Aligned_cols=138  Identities=11%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CCceEeeeccccchHHHHHhcCC-CceeEEeecCcc-ccHHHHHH-----cCc---cccc-cccccCCCCCCCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPK-SWVMNVVPTTAK-NTLGVIYE-----RGL---IGIY-HDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~-~~~~~V~~~D~s-~~L~~~~~-----Rgl---~~~~-~~~~e~l~~~p~sFDlV~a  149 (235)
                      ..++|+|+|||.|++++.+.... .-...++++|.+ ++++.|++     .|+   +... .|..+ ++...+.||+|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEE
Confidence            57899999999998766554311 112369999999 78776544     233   1111 22222 2212378999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH---HHHH-HHH-HHhccCceeEeecCCCCCCCCceEEEEEecc
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD---ALNK-VRK-FAEGMRWDTKMMDHEDGPLMPEKILIAVKQY  224 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---~~~~-i~~-~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~~  224 (235)
                      . ++++. +..+..++|..+.|.|||||+++++-.+.   ++-. +.. ..+  .|++-...|+.++ .-+-+++++|.-
T Consensus       202 ~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~~r~~~  276 (296)
T PLN03075        202 A-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVIIARKPG  276 (296)
T ss_pred             e-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEEEEeec
Confidence            9 88776 34578999999999999999999996321   1111 111 112  7888766666555 567899999965

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.10  E-value=3e-10  Score=99.01  Aligned_cols=96  Identities=11%  Similarity=0.008  Sum_probs=71.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH-HHcCcccc-----------------ccccccCCCCCC-
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI-YERGLIGI-----------------YHDWCEGFSTYP-  141 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~-~~Rgl~~~-----------------~~~~~e~l~~~p-  141 (235)
                      ..+|||+|||.|..+.+|+++|   .+|+++|+| ..++.+ .++|+...                 ++.....++..+ 
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            4699999999999999999986   379999999 777753 45665311                 121112232233 


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii  181 (235)
                      .+||+|+-..+|+|++ ...-..++..|.++|||||++++
T Consensus       115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence            6899999999999985 34567999999999999996444

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.10  E-value=4e-10  Score=106.07  Aligned_cols=122  Identities=11%  Similarity=0.069  Sum_probs=77.7

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcc--ccccccccCC-CCC-CCccceeeeh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLI--GIYHDWCEGF-STY-PRTYDLIHAN  150 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~--~~~~~~~e~l-~~~-p~sFDlV~a~  150 (235)
                      .....+||+|||+|.++..++.... ..+++|+|.+ .++..+.+    +|+.  ..++..+..+ ..+ +++||.|+++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln  199 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH  199 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence            3456899999999999999987532 3589999998 77765443    3542  2333333322 223 4999999985


Q ss_pred             hhhccCCC---CCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHH-HhccCcee
Q 026623          151 GVFSLYEN---TCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKF-AEGMRWDT  202 (235)
Q Consensus       151 ~vl~h~~~---~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~-~~~~~W~~  202 (235)
                      .-.-+...   +-....+|.|+.|+|||||.+.+.. ..++...+... .+..++..
T Consensus       200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~  256 (390)
T PRK14121        200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI  256 (390)
T ss_pred             CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence            43322110   0012689999999999999999874 44554444444 33334443

>TIGR03438 probable methyltransferase

Probab=99.08  E-value=3.5e-10  Score=102.63  Aligned_cols=125  Identities=10%  Similarity=0.089  Sum_probs=79.6

Q ss_pred             ccccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---Ccc
Q 026623           53 GKSYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---GLI  127 (235)
Q Consensus        53 ~~~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---gl~  127 (235)
                      ++-|...++.  .....+.. +...++.  ..+|||+|||+|.++..|.+...-..+++++|+| +||..+.++   ..+
T Consensus        38 peYy~tr~E~--~il~~~~~~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p  113 (301)
T TIGR03438        38 PEYYPTRTEA--AILERHADEIAAATGA--GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP  113 (301)
T ss_pred             CccccHHHHH--HHHHHHHHHHHHhhCC--CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC
Confidence            4556555442  33333333 3334443  4689999999999999888752112479999999 999987765   111


Q ss_pred             c----cccccc-cCCCCCCC----ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          128 G----IYHDWC-EGFSTYPR----TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       128 ~----~~~~~~-e~l~~~p~----sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +    .++..+ +.++..+.    ...++++...++|+. ..+...+|+++.++|+|||.|+|.
T Consensus       114 ~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       114 QLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             CceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            1    122222 22332222    233555567788774 456779999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.08  E-value=4.1e-10  Score=103.38  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc-------cc-ccccccCCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI-------GI-YHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~-------~~-~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|.++..|.+.+   .+|+++|+| +|+..+.++.-.       .. ..-.+..+...+++||+|+|..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence            35699999999999999999875   379999999 999988776310       00 0000122333468999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii  181 (235)
                      +|+|+++ .....++..+.+ +.+||.++.
T Consensus       221 vL~H~p~-~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        221 VLIHYPQ-DKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             EEEecCH-HHHHHHHHHHHh-hcCCEEEEE
Confidence            9999864 234566677765 456666443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.07  E-value=1.2e-09  Score=98.15  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccc-cccccCCCCCCCccceeeeh---
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIY-HDWCEGFSTYPRTYDLIHAN---  150 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~-~~~~e~l~~~p~sFDlV~a~---  150 (235)
                      .+|||+|||+|.++..|+.... ...|+++|.+ .++..+.+.    |+.   ..+ .|+.+.+  .++.||+|+++   
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvsNPPy  192 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVSNPPY  192 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEECCCC
Confidence            5899999999999999987521 2479999999 888876653    332   122 3333322  22589999996   


Q ss_pred             ----------hhhccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHh-ccCce-eEeecCCC
Q 026623          151 ----------GVFSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAE-GMRWD-TKMMDHED  209 (235)
Q Consensus       151 ----------~vl~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~-~~~W~-~~~~~~~~  209 (235)
                                .++.|.|..         ..+..++.+..+.|+|||++++--.......+.++.. ...|. +..+  .|
T Consensus       193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~--~D  270 (284)
T TIGR00536       193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENG--RD  270 (284)
T ss_pred             CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEe--cC
Confidence                      233333210         0245889999999999999999876655556777765 45564 3332  22


Q ss_pred             CCCCCceEEEEEec
Q 026623          210 GPLMPEKILIAVKQ  223 (235)
Q Consensus       210 ~~~~~e~~l~~~k~  223 (235)
                       -.+.++++++++.
T Consensus       271 -~~g~~R~~~~~~~  283 (284)
T TIGR00536       271 -LNGKERVVLGFYH  283 (284)
T ss_pred             -CCCCceEEEEEec
Confidence             2367899998753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14967 putative methyltransferase; Provisional

Probab=99.06  E-value=1.7e-09  Score=93.66  Aligned_cols=120  Identities=13%  Similarity=0.171  Sum_probs=74.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ...+|||+|||+|.++..++..+.  ..++++|.+ .++..+.++    |+. ..++..... ...+++||+|+++--+.
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCC
Confidence            356899999999999998887642  379999999 888765543    331 122211111 11247999999975433


Q ss_pred             cCCCC------------------CChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeE
Q 026623          155 LYENT------------------CKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       155 h~~~~------------------~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~  203 (235)
                      .....                  ..+..++.++.|+|||||.+++.... .....+.+.+++-.|.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  180 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE  180 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence            21100                  01467889999999999999985322 122233444444455443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.06  E-value=1.2e-09  Score=94.60  Aligned_cols=119  Identities=22%  Similarity=0.263  Sum_probs=79.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccceeeehhhhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ..+|||+|||+|.++..++.... ..+++++|.+ .++..+.+.    |+.  ..++..+.. ++.+++||+|+|+--+.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence            45899999999999999987521 2479999998 888866543    432  222322211 22248999999964332


Q ss_pred             ------cCCCC-----------------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCcee
Q 026623          155 ------LYENT-----------------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       155 ------h~~~~-----------------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~  202 (235)
                            ++...                 .....++.++.|+|||||.+++.........+.+++++..+..
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~  236 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD  236 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence                  11100                 0124678999999999999999876655567777777777754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.05  E-value=6.7e-10  Score=80.13  Aligned_cols=95  Identities=21%  Similarity=0.311  Sum_probs=68.9

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---cCc---cccccccccCCCC-CCCccceeeehhhhcc
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---RGL---IGIYHDWCEGFST-YPRTYDLIHANGVFSL  155 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---Rgl---~~~~~~~~e~l~~-~p~sFDlV~a~~vl~h  155 (235)
                      +|||+|||+|.++..+...+  ...++++|.+ +.+..+.+   .+.   +..++........ .+.+||+|+++.++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            48999999999999888733  3579999998 66665541   111   2222322233332 3489999999999987


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .  ......++..+.+.|||||.+++.
T Consensus        79 ~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 L--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            3  236789999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PTZ00146 fibrillarin; Provisional

Probab=99.04  E-value=3.3e-09  Score=96.52  Aligned_cols=99  Identities=15%  Similarity=0.082  Sum_probs=66.2

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-c----cHHHHHHcCccc-cccccccC--CCCCCCccceeeeh
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-N----TLGVIYERGLIG-IYHDWCEG--FSTYPRTYDLIHAN  150 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~----~L~~~~~Rgl~~-~~~~~~e~--l~~~p~sFDlV~a~  150 (235)
                      -.+..+|||+|||+|.++..|++.-.-.-.|+++|++ .    ++..+.+|-.+. ...|....  +.....+||+|+++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            3456799999999999999998751111358999998 4    445555553332 33332221  11123789999987


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ...   ++  +...++.|++|+|||||.|+|.
T Consensus       210 va~---pd--q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        210 VAQ---PD--QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCC---cc--hHHHHHHHHHHhccCCCEEEEE
Confidence            642   22  4456778999999999999995

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.03  E-value=7.5e-10  Score=101.49  Aligned_cols=118  Identities=15%  Similarity=0.147  Sum_probs=80.7

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccceeeeh
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+..+|||.|||+|+++......+   ..++++|.+ .|+..+...    |+.  ..++..+..+|+.+++||+|+++
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d  255 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD  255 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence            34456789999999999977766543   469999999 888765443    442  23455556677656899999996


Q ss_pred             hhhcc---CCC--C-CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCc
Q 026623          151 GVFSL---YEN--T-CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRW  200 (235)
Q Consensus       151 ~vl~h---~~~--~-~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W  200 (235)
                      --+..   ...  . ....++|.|+.|+|||||++++......  .+++++++..|
T Consensus       256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~  309 (329)
T TIGR01177       256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR  309 (329)
T ss_pred             CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence            33211   100  0 1247899999999999999988764431  34456777777

This family is found exclusively in the Archaea.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.01  E-value=2.5e-09  Score=90.65  Aligned_cols=114  Identities=13%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--ccccccccc-CCCCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCE-GFSTYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e-~l~~~p~sFDlV~  148 (235)
                      +......+|||+|||+|.++..++.... ...|+++|.+ .++..+.++    |+  +..++..++ .++.....+|.++
T Consensus        36 l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         36 LRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence            4434567999999999999888864311 2479999998 888876543    43  222222222 1222224467765


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhcc
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGM  198 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~  198 (235)
                      ...       ..++..++.++.|+|+|||.+++.... +.+..+.+..+.+
T Consensus       115 ~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  158 (196)
T PRK07402        115 IEG-------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL  158 (196)
T ss_pred             EEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence            421       135789999999999999999998643 3344455555544

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.99  E-value=4.7e-09  Score=94.78  Aligned_cols=122  Identities=19%  Similarity=0.222  Sum_probs=79.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCCC-Cccceeeehh-
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTYP-RTYDLIHANG-  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~p-~sFDlV~a~~-  151 (235)
                      ..+|||+|||+|.++.+|+.... ...|+++|.+ .++..+.+.    |+.   ..++..+  +...+ ++||+|+++- 
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECCC
Confidence            46899999999999999987521 2479999999 888876654    442   2222221  12223 6899999861 


Q ss_pred             -----h-------hccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecC
Q 026623          152 -----V-------FSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDH  207 (235)
Q Consensus       152 -----v-------l~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~  207 (235)
                           .       +.|.+..         .....++.++.++|+|||++++--.... ..++.+.....|.-..+++
T Consensus       199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~  274 (284)
T TIGR03533       199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN  274 (284)
T ss_pred             CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence                 1       1121110         0135789999999999999998765433 5677776655544344333

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.99  E-value=1.9e-09  Score=89.89  Aligned_cols=100  Identities=22%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--cc-ccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GI-YHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~-~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.++..++.+.. ...|+.+|.+ .++..+.+.    ++.  .. .+|+.+.++  +..||+|+|+-=
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP  107 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP  107 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred             cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence            466899999999999999988643 3469999999 888866442    332  12 233333333  599999999765


Q ss_pred             hccCCC--CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYEN--TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~--~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++.-.+  ..-+.+++.+..+.|||||.+++.-
T Consensus       108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            542210  0125789999999999999986553

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.95  E-value=2.4e-09  Score=97.58  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=89.0

Q ss_pred             ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc
Q 026623           55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI  129 (235)
Q Consensus        55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~  129 (235)
                      .|-..+|-=-+.+..+...+  ..  +..+|||+|||+|-++.+-+..|  ...|+++|+. ..+..+.+.    |+-..
T Consensus       139 AFGTG~H~TT~lcl~~l~~~--~~--~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~  212 (295)
T PF06325_consen  139 AFGTGHHPTTRLCLELLEKY--VK--PGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVEDR  212 (295)
T ss_dssp             SS-SSHCHHHHHHHHHHHHH--SS--TTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred             cccCCCCHHHHHHHHHHHHh--cc--CCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence            46666554334454433322  22  35699999999998766666555  3469999997 666665543    33221


Q ss_pred             ccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCC
Q 026623          130 YHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHE  208 (235)
Q Consensus       130 ~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~  208 (235)
                      +. ...........||+|+||-+..      -+..++.++.+.|+|||++|+|=-. +..+.+.+.++. .|++.....+
T Consensus       213 ~~-v~~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~  284 (295)
T PF06325_consen  213 IE-VSLSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE  284 (295)
T ss_dssp             EE-ESCTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE
T ss_pred             EE-EEEecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE
Confidence            11 0111122239999999976663      3568888999999999999999422 223455556666 7776544333


Q ss_pred             CCCCCCceEEEEEec
Q 026623          209 DGPLMPEKILIAVKQ  223 (235)
Q Consensus       209 ~~~~~~e~~l~~~k~  223 (235)
                          +.=.-|+++|+
T Consensus       285 ----~~W~~l~~~Kk  295 (295)
T PF06325_consen  285 ----GEWVALVFKKK  295 (295)
T ss_dssp             ----TTEEEEEEEE-
T ss_pred             ----CCEEEEEEEeC
Confidence                22345666664

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.3e-08  Score=92.77  Aligned_cols=120  Identities=19%  Similarity=0.235  Sum_probs=83.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCC--Cccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYP--RTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p--~sFDlV~a~~vl  153 (235)
                      +.++|||+|||+|-++-+.++.|  +..|+++|+- -.++.+++.    |+....+.-+-.++..+  +.||+|+||= |
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L  238 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L  238 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence            47899999999999988888776  3469999997 677766664    22211111111112223  5999999965 4


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHE  208 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~  208 (235)
                      .+     -+..+..++.|.|||||++|+|=-. +..+.+...+.+-.|++......
T Consensus       239 A~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         239 AE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             HH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence            21     3568899999999999999999533 23556777787888887755443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.92  E-value=5.1e-09  Score=89.70  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccc-cCCCCCCCcc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWC-EGFSTYPRTY  144 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~-e~l~~~p~sF  144 (235)
                      ++..+...+..+|||+|||+|.++..|+...   ..|+++|.+ +++..+.++    |+  +...+... +.++ ..++|
T Consensus        70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  145 (212)
T PRK00312         70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPF  145 (212)
T ss_pred             HHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCc
Confidence            3334454556799999999999988777653   269999998 777766553    33  22223222 1122 12789


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |+|+++..++++         ..++.+.|+|||.+++.-.
T Consensus       146 D~I~~~~~~~~~---------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        146 DRILVTAAAPEI---------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CEEEEccCchhh---------hHHHHHhcCCCcEEEEEEc
Confidence            999997766433         4567899999999998754

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.92  E-value=9.7e-09  Score=97.59  Aligned_cols=137  Identities=14%  Similarity=0.169  Sum_probs=88.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-ccccc-ccccCCCCCCCccceeeehhhhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYH-DWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~-~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ..+|||+|||+|.++..|+.... ..+|+++|.| .+++.+.+.    +. +..++ |+.+......++||+|+||-=..
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI  330 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI  330 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence            35899999999999988875321 3479999999 999877654    32 22222 22221111236899999954210


Q ss_pred             -------------cCC-----CCC----ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE--eecCCCC
Q 026623          155 -------------LYE-----NTC----KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK--MMDHEDG  210 (235)
Q Consensus       155 -------------h~~-----~~~----~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~--~~~~~~~  210 (235)
                                   |.|     ...    -+..++.+..+.|+|||.+++--..+..+.+++++++..|...  ..|.-  
T Consensus       331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~--  408 (423)
T PRK14966        331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA--  408 (423)
T ss_pred             CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--
Confidence                         000     000    1237778888999999999886555556678888877777643  22222  


Q ss_pred             CCCCceEEEEEec
Q 026623          211 PLMPEKILIAVKQ  223 (235)
Q Consensus       211 ~~~~e~~l~~~k~  223 (235)
                        +.++++++++.
T Consensus       409 --G~dR~v~~~~~  419 (423)
T PRK14966        409 --GLDRVTLGKYM  419 (423)
T ss_pred             --CCcEEEEEEEh
Confidence              67899998753

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.91  E-value=5.7e-09  Score=93.34  Aligned_cols=91  Identities=24%  Similarity=0.454  Sum_probs=74.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCCCCCCccceeeehhhhccCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ...++||+|+|-|+.+..|+..   ..+|...+.| .|.....+||... ...+|-+    -+..||+|.|-++|    |
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvL----D  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVL----D  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhh----h
Confidence            4678999999999999999864   3468899999 8888888899732 2333332    24789999999999    6


Q ss_pred             CCC-hHHHHHHHhhhhcCCcEEEEE
Q 026623          159 TCK-PEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       159 ~~~-~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+ +..+|.+|++.|+|+|.+++.
T Consensus       163 Rc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  163 RCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence            666 789999999999999999998

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.91  E-value=6.7e-10  Score=85.46  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=67.2

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCC--CCCCccceeeehhh
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFS--TYPRTYDLIHANGV  152 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~--~~p~sFDlV~a~~v  152 (235)
                      .+|||+|||+|.++.++.+.+  ..+++++|+. ..++.+..+    ++   +..++.....+.  +.+++||+|+++--
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            489999999999999888765  4689999998 666665543    22   122222222232  23599999999887


Q ss_pred             hccCC-----CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYE-----NTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +....     .+.....++.++.|+|||||.+++.-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            76321     11134688999999999999998753

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=1.9e-08  Score=95.67  Aligned_cols=126  Identities=16%  Similarity=0.278  Sum_probs=80.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC----CCCCccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS----TYPRTYD  145 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~----~~p~sFD  145 (235)
                      +...+..+|||+|||+|+.+.+|+..-.-...|+++|.+ +++..+.++    |+  +..++...+.++    ..+++||
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD  327 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD  327 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence            444456799999999999998887641112369999999 888865543    44  223333333343    3347999


Q ss_pred             eeeeh------hhhccCCCC------CC-------hHHHHHHHhhhhcCCcEEEEEeC----hHHHHHHHHHHhcc-Cce
Q 026623          146 LIHAN------GVFSLYENT------CK-------PEDILLEMDRILRPEGAVIFRDE----VDALNKVRKFAEGM-RWD  201 (235)
Q Consensus       146 lV~a~------~vl~h~~~~------~~-------~~~~L~Em~RVLRPGG~lii~d~----~~~~~~i~~~~~~~-~W~  201 (235)
                      .|++.      .++.+-++.      .+       ...+|.++.|.|||||.++.++.    .+-...++.+++.. .|+
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~  407 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK  407 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence            99963      344433210      01       25889999999999999998862    12344455665543 455


Q ss_pred             e
Q 026623          202 T  202 (235)
Q Consensus       202 ~  202 (235)
                      .
T Consensus       408 ~  408 (434)
T PRK14901        408 L  408 (434)
T ss_pred             e
Confidence            3

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.90  E-value=1.3e-08  Score=93.04  Aligned_cols=112  Identities=19%  Similarity=0.202  Sum_probs=73.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---ccccccc-ccCCCCCCCccceeeehh--
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDW-CEGFSTYPRTYDLIHANG--  151 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~-~e~l~~~p~sFDlV~a~~--  151 (235)
                      .+|||+|||+|.++.+|+.... ...|+++|.+ .++..+.+.    |+   +..++.. .+.++  +++||+|+++-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence            5899999999999999986521 2479999999 888876554    43   2223222 22222  36899999861  


Q ss_pred             -----------hhccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc
Q 026623          152 -----------VFSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM  198 (235)
Q Consensus       152 -----------vl~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~  198 (235)
                                 .+.|.+..         .....++.++.+.|+|||.+++--... ...+.++....
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~  277 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV  277 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence                       11222210         013588999999999999999965443 23466665543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.89  E-value=9.7e-09  Score=89.42  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=67.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK  161 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~  161 (235)
                      ...|-|+|||.+.+|..+.+.    ..|...|+-..      ..  .+.......+|..+++.|++++...|.-    .+
T Consensus        73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMG----Tn  136 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMG----TN  136 (219)
T ss_dssp             TS-EEEES-TT-HHHHH--S-------EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---S----S-
T ss_pred             CEEEEECCCchHHHHHhcccC----ceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhC----CC
Confidence            468999999999999887643    24666666311      11  1222223568877899999998777742    47


Q ss_pred             hHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCceeEeecCC
Q 026623          162 PEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDTKMMDHE  208 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~~~~~~~  208 (235)
                      +.++|.|..|||||||.++|.+-..-   .+..-+.++++..++...|..
T Consensus       137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~  186 (219)
T PF05148_consen  137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES  186 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred             cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC
Confidence            89999999999999999999985542   344456688888888776544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.2e-08  Score=92.30  Aligned_cols=134  Identities=22%  Similarity=0.328  Sum_probs=88.1

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cccccccCCCCCCCccceeeehh----
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IYHDWCEGFSTYPRTYDLIHANG----  151 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~~~~e~l~~~p~sFDlV~a~~----  151 (235)
                      +|||+|||+|-.|.+|+.... ..+|+++|+| +.|..|.+.    |+..   ...+|.+.++   ++||+|+||=    
T Consensus       113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~---~~fDlIVsNPPYip  188 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR---GKFDLIVSNPPYIP  188 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC---CceeEEEeCCCCCC
Confidence            899999999999999998643 2589999999 888876543    5422   1123333333   6999999841    


Q ss_pred             ---------hhccCC------CC---CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCC
Q 026623          152 ---------VFSLYE------NT---CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLM  213 (235)
Q Consensus       152 ---------vl~h~~------~~---~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~  213 (235)
                               ++.|-|      ..   .....++.+..++|+|||.+++.-.......++++.....+ ...........+
T Consensus       189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g  267 (280)
T COG2890         189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF-FEIVETLKDLFG  267 (280)
T ss_pred             CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC-ceEEEEEecCCC
Confidence                     001100      00   01248899999999999999999776666678888777774 221111222235


Q ss_pred             CceEEEEEe
Q 026623          214 PEKILIAVK  222 (235)
Q Consensus       214 ~e~~l~~~k  222 (235)
                      .+++.++++
T Consensus       268 ~~rv~~~~~  276 (280)
T COG2890         268 RDRVVLAKL  276 (280)
T ss_pred             ceEEEEEEe
Confidence            677777654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.86  E-value=9.6e-09  Score=97.44  Aligned_cols=106  Identities=20%  Similarity=0.266  Sum_probs=70.7

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc-c--ccccccCCCC--CCCccce
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG-I--YHDWCEGFST--YPRTYDL  146 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~-~--~~~~~e~l~~--~p~sFDl  146 (235)
                      +...+..+|||+|||+|+.+..++..-. ...|+++|.+ +++..+.++    |+.. .  .......+++  .+++||.
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~  312 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR  312 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence            4555568999999999999988876421 3479999999 888865443    4421 1  1111111222  2378999


Q ss_pred             eeeh------hhhccCCCC------CC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHAN------GVFSLYENT------CK-------PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~------~vl~h~~~~------~~-------~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++.      .++.+.++-      .+       ...+|.++.|+|||||.+++++
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9853      455543320      00       2479999999999999999985

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=9.1e-09  Score=91.14  Aligned_cols=100  Identities=16%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             eEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc------cccccccccCC---CCCCCccceeeehhh
Q 026623           84 NVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEGF---STYPRTYDLIHANGV  152 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~l---~~~p~sFDlV~a~~v  152 (235)
                      .||.+|||.|+..--|.+. +--...|.+.|.| +.+....++--      -..++|.+.+-   |..++++|+|++-+|
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv  153 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV  153 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence            8999999999987777653 2213568999999 88887665421      23445554432   334599999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |+.+. ...+..++..+.|+|||||.++++|-
T Consensus       154 LSAi~-pek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  154 LSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             EeccC-hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence            99884 45689999999999999999999984

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.85  E-value=1.5e-08  Score=98.43  Aligned_cols=134  Identities=16%  Similarity=0.268  Sum_probs=85.8

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc---ccc-cccccCCCCCCCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI---GIY-HDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~-~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++..|+.. +  ...|+++|.| .++..+.+.    |+.   ..+ .|+.+.+  .+++||+|+|+-
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p--~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNP  214 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP--NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVSNP  214 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEECC
Confidence            458999999999999888753 3  2479999999 888877664    332   112 2222222  136899999842


Q ss_pred             --------------hhccCCC-----C----CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCC
Q 026623          152 --------------VFSLYEN-----T----CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHE  208 (235)
Q Consensus       152 --------------vl~h~~~-----~----~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~  208 (235)
                                    +..|.+.     .    ..+..++.++.++|+|||.+++.-....-..+..++.+..|...... .
T Consensus       215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~-~  293 (506)
T PRK01544        215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVY-K  293 (506)
T ss_pred             CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEE-e
Confidence                          1112110     0    01246788999999999999987555555677777777677643221 1


Q ss_pred             CCCCCCceEEEEE
Q 026623          209 DGPLMPEKILIAV  221 (235)
Q Consensus       209 ~~~~~~e~~l~~~  221 (235)
                      |- .+.++++++.
T Consensus       294 D~-~g~~R~v~~~  305 (506)
T PRK01544        294 DL-QGHSRVILIS  305 (506)
T ss_pred             cC-CCCceEEEec
Confidence            11 2567887764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.85  E-value=3.6e-08  Score=87.84  Aligned_cols=121  Identities=19%  Similarity=0.307  Sum_probs=89.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCC-CC-Cccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFST-YP-RTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~-~p-~sFDlV~a~~  151 (235)
                      ..+|||+|||+|..+..|+++..- ..+++++.. .+.+.|.+-    ++   +.+++++...+.. .+ .+||+|+||=
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP  123 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP  123 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence            679999999999999999987211 579999998 555554332    11   3344443333331 22 5799999963


Q ss_pred             hh---------------ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          152 VF---------------SLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       152 vl---------------~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      =+               .|+.-.++++++++=..++|||||.+.+.-..+.+.+|-.++++++|...
T Consensus       124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k  190 (248)
T COG4123         124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK  190 (248)
T ss_pred             CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence            32               12334577899999999999999999999999988899999999999875

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.85  E-value=1.4e-08  Score=90.09  Aligned_cols=126  Identities=14%  Similarity=0.175  Sum_probs=83.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccccc-cccccCCCC-CCCccceeeehhhh-
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIY-HDWCEGFST-YPRTYDLIHANGVF-  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~-~~~~e~l~~-~p~sFDlV~a~~vl-  153 (235)
                      ..+|||+|||+|.++..|..... ...|+++|.+ .+++.+.+.    |. ..+ .|+.+.++. ..+.||+|+++-=+ 
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy~  164 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPYV  164 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCCC
Confidence            35899999999999988875411 2469999999 888876543    21 122 222232321 23679999986321 


Q ss_pred             -----ccCCC-------C------CC----hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCC
Q 026623          154 -----SLYEN-------T------CK----PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHED  209 (235)
Q Consensus       154 -----~h~~~-------~------~~----~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~  209 (235)
                           ..++.       .      .+    +..++....++|||||.+++.-..+....+..++++..|+..+..+++
T Consensus       165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~  242 (251)
T TIGR03704       165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE  242 (251)
T ss_pred             CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence                 11100       0      01    347788888999999999998766666778888888888877666553

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK04457 spermidine synthase; Provisional

Probab=98.82  E-value=3.4e-08  Score=88.27  Aligned_cols=137  Identities=11%  Similarity=0.105  Sum_probs=83.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Ccc------cccccccc-CCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GLI------GIYHDWCE-GFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl~------~~~~~~~e-~l~~~p~sFDlV~a~~  151 (235)
                      ..++|||+|||+|.++.++..... ...++.+|+. +++..+.+. ++.      ..+++.+. -+...+++||+|+++.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            467999999999999998876522 3579999998 888887765 221      12222221 1233457899999853


Q ss_pred             hhcc--CCCCCChHHHHHHHhhhhcCCcEEEEEe---ChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          152 VFSL--YENTCKPEDILLEMDRILRPEGAVIFRD---EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       152 vl~h--~~~~~~~~~~L~Em~RVLRPGG~lii~d---~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                       ++.  .+.......++.++.++|+|||.+++.-   .......++.+...+.-.+......   ...+.++++.|
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~~a~~  216 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAVFAFK  216 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEEEEEC
Confidence             331  1111123699999999999999999852   2222222334433333222222222   12457888876

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.80  E-value=1.1e-08  Score=88.07  Aligned_cols=127  Identities=15%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             cccchHHHHHHHHHHH-HHhhhhCCCCCceEeeeccccch----HHHHHhc----CCCceeEEeecCcc-ccHHHHHHcC
Q 026623           56 YQEDSKLWKKHVNAYK-KMNSLIGTRRYRNVMDMNAGLGG----FAAALES----PKSWVMNVVPTTAK-NTLGVIYERG  125 (235)
Q Consensus        56 f~~d~~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~G~----faa~L~~----~~~~~~~V~~~D~s-~~L~~~~~Rg  125 (235)
                      |=.|...|........ .++.....+..-+|+.+||++|.    +|..|.+    ...|-..|.+.|++ ..|+.|.+ |
T Consensus         5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-G   83 (196)
T PF01739_consen    5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-G   83 (196)
T ss_dssp             TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-T
T ss_pred             ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-C
Confidence            4556666665555433 23322333356799999999994    5555554    23456789999999 88886543 2


Q ss_pred             c---------cc---------------------------cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHH
Q 026623          126 L---------IG---------------------------IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEM  169 (235)
Q Consensus       126 l---------~~---------------------------~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em  169 (235)
                      .         ..                           ..|+.++ .+...+.||+|+|-+||-++ +...-..++.-+
T Consensus        84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l  161 (196)
T PF01739_consen   84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRL  161 (196)
T ss_dssp             EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHH
T ss_pred             CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe-CHHHHHHHHHHH
Confidence            1         00                           1155555 22244999999999999998 334567999999


Q ss_pred             hhhhcCCcEEEEEeCh
Q 026623          170 DRILRPEGAVIFRDEV  185 (235)
Q Consensus       170 ~RVLRPGG~lii~d~~  185 (235)
                      ++.|+|||+|++....
T Consensus       162 ~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  162 HRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             GGGEEEEEEEEE-TT-
T ss_pred             HHHcCCCCEEEEecCc
Confidence            9999999999998643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=1.2e-08  Score=97.10  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCC-CCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFS-TYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~-~~p~sFDlV~  148 (235)
                      ++..+..+|||+|||+|+.+.+++..-.-...|+++|.+ .++..+.++    |+.  ...+.....++ +.+++||.|+
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl  312 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRIL  312 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEE
Confidence            444556799999999999888877631112479999999 888876544    442  23333333454 3358899999


Q ss_pred             ehhh---hccCCCCCC----------------hHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGV---FSLYENTCK----------------PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~v---l~h~~~~~~----------------~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++--   +..++...+                ..++|.+..+.|||||.++.+.
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6322   211211111                1467999999999999999996

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.78  E-value=2.7e-08  Score=94.42  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCC-CC-CCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFS-TY-PRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~-~~-p~sFDlV~  148 (235)
                      ++..+..+|||+|||+|+++..+.+... ...|+++|.+ .++..+.++    |+ +..+...+..++ .+ +++||.|+
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl  318 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL  318 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence            4444567999999999999998887531 1479999999 888876544    33 222333333333 23 37899999


Q ss_pred             ehh------hhccCC------CCCC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANG------VFSLYE------NTCK-------PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~------vl~h~~------~~~~-------~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++-      ++.+-+      +..+       ..++|.+..++|||||.+++++
T Consensus       319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            422      222111      1011       1378999999999999999886

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.76  E-value=1.6e-08  Score=88.06  Aligned_cols=101  Identities=18%  Similarity=0.268  Sum_probs=73.8

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCccccHHHHHHcCccccc-cccccCCCCCCCccceeeehhhh
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAKNTLGVIYERGLIGIY-HDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s~~L~~~~~Rgl~~~~-~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .......++|||+|+|+|.++.++..+ |  ...++-.|.+..++.+.+..-+... +|..+.   +|. +|+++..++|
T Consensus        95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---~P~-~D~~~l~~vL  168 (241)
T PF00891_consen   95 AFDFSGFKTVVDVGGGSGHFAIALARAYP--NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---LPV-ADVYLLRHVL  168 (241)
T ss_dssp             HSTTTTSSEEEEET-TTSHHHHHHHHHST--TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---CSS-ESEEEEESSG
T ss_pred             cccccCccEEEeccCcchHHHHHHHHHCC--CCcceeeccHhhhhccccccccccccccHHhh---hcc-ccceeeehhh
Confidence            345566789999999999999999874 4  2468889998777766663222221 222233   446 9999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCC--cEEEEEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPE--GAVIFRD  183 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPG--G~lii~d  183 (235)
                      |++++ .+...+|+.+.+.|+||  |.++|.|
T Consensus       169 h~~~d-~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  169 HDWSD-EDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             GGS-H-HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             hhcch-HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            99854 46789999999999999  9999997

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.75  E-value=1.6e-08  Score=96.56  Aligned_cols=106  Identities=19%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +...+..+|||+|||+|+.+..+++.-.-...|+++|.+ .+++.+.++    |+  +.........++ .+++||+|++
T Consensus       246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence            444456799999999999887776521012369999999 888865543    54  222332233333 2378999995


Q ss_pred             h------hhhccCC------CCCC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 N------GVFSLYE------NTCK-------PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~------~vl~h~~------~~~~-------~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .      .++.+-+      ...+       ...+|.++.+.|||||.+++++
T Consensus       325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            2      2222111      0011       1368999999999999999997

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.75  E-value=3.4e-08  Score=91.00  Aligned_cols=101  Identities=16%  Similarity=0.016  Sum_probs=66.0

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDl  146 (235)
                      +..+...+..+|||+|||+|.+++.+++...-...|+++|.+ +++..+.++    |+.  ..++..+...+.....||+
T Consensus        73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~  152 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDV  152 (322)
T ss_pred             HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccE
Confidence            333444446799999999999999988642111258999999 888766552    431  2223222222223378999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+++..+.+         +...+.++|||||.+++..
T Consensus       153 Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        153 IFVTVGVDE---------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             EEECCchHH---------hHHHHHHhcCCCCEEEEEe
Confidence            998755543         3345678999999998864

>PRK00811 spermidine synthase; Provisional

Probab=98.74  E-value=1.3e-07  Score=85.42  Aligned_cols=103  Identities=13%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc-----cccccccccC-CCCCCCccce
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL-----IGIYHDWCEG-FSTYPRTYDL  146 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl-----~~~~~~~~e~-l~~~p~sFDl  146 (235)
                      ...++|||+|||.|+++..+.+.+. +.+|+.+|+. ++++.+.+.      ++     +..+++.+.. +...+++||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            3467999999999999999987632 4579999998 888876653      11     1122222221 2333489999


Q ss_pred             eeehhhhccCCCC-CChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENT-CKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~-~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++...-.+.+.. ---..++.++.|+|+|||.+++.-
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            9985432221110 002578899999999999999963

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.73  E-value=3.9e-08  Score=87.71  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=69.6

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +...+..+|||+|||+|+.+..|++.-.....|+++|.+ .+++.+.++    |+  +..++..+..++...+.||.|++
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            344456789999999999988876531111369999999 888765443    43  22334334445434467999986


Q ss_pred             hh------hhccCCCC------CC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 NG------VFSLYENT------CK-------PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~------vl~h~~~~------~~-------~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +-      ++.+-++.      .+       ...+|.++.+.|||||+++.+.
T Consensus       147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            32      22221110      01       1369999999999999999995

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.71  E-value=4.9e-08  Score=93.02  Aligned_cols=107  Identities=19%  Similarity=0.231  Sum_probs=69.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC-CCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS-TYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~-~~p~sFDlV~  148 (235)
                      +...+..+|||+|||+|+++..+++.-.-...|+++|.+ +++..+.++    |+  +..++.....++ .++++||+|+
T Consensus       246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl  325 (444)
T PRK14902        246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKIL  325 (444)
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEE
Confidence            333446789999999999998887641012479999998 888766543    43  223333333332 2448999999


Q ss_pred             ehh------hhccCCC------CCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANG------VFSLYEN------TCKP-------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~------vl~h~~~------~~~~-------~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++-      ++.+-++      ..++       ..+|.++.|+|||||.++.+.
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            742      2222110      0011       368999999999999999775

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.71  E-value=3.4e-08  Score=99.30  Aligned_cols=119  Identities=13%  Similarity=0.200  Sum_probs=79.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccc-cCCCCCCCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWC-EGFSTYPRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~-e~l~~~p~sFDlV~a~~  151 (235)
                      .++|||+|||+|+|+.+++..+.  ..|+++|.| .+++.+.+.    |+.    ..++..+ +-+....++||+|+++-
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            57999999999999999998753  369999999 888876553    332    1122211 11211257899999841


Q ss_pred             -----------hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEee
Q 026623          152 -----------VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       152 -----------vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~  205 (235)
                                 ++...   .+...++....++|+|||.++++.+...+....+.+..-.+.+...
T Consensus       617 P~f~~~~~~~~~~~~~---~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i  678 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQ---RDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI  678 (702)
T ss_pred             CCCCCCCccchhhhHH---HHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence                       11111   1346788899999999999999876554444455556666776643

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.69  E-value=1.6e-08  Score=93.44  Aligned_cols=103  Identities=19%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---------------cc-cccccccc------CC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---------------LI-GIYHDWCE------GF  137 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---------------l~-~~~~~~~e------~l  137 (235)
                      +..+|||||||-||=.......+  +..++++|++ ..++.+.+|-               .. ..++..|-      .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            56899999999888444444444  4579999999 8888877774               11 11222221      12


Q ss_pred             CCCCCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          138 STYPRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       138 ~~~p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +.....||+|-|.+.|||. .+......+|.-+.+.|||||+||.+..-
T Consensus       140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            2122599999999999974 22233557999999999999999999643

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK01581 speE spermidine synthase; Validated

Probab=98.68  E-value=1.6e-07  Score=87.99  Aligned_cols=145  Identities=12%  Similarity=0.076  Sum_probs=85.5

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--------C-c----cccccccccC-CCCCCCcc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--------G-L----IGIYHDWCEG-FSTYPRTY  144 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--------g-l----~~~~~~~~e~-l~~~p~sF  144 (235)
                      ...++||++|||+|..++.+.+.+. +.+|+.+|++ ++++++.+.        + +    +..+++.+.. +...++.|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            3467999999999999888887642 4689999999 889988751        1 1    1111221111 23334789


Q ss_pred             ceeeehhhhc--cCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-----HHHHHHHHHhccCceeEeecCCCCCC-CCce
Q 026623          145 DLIHANGVFS--LYENTCKPEDILLEMDRILRPEGAVIFRDEVD-----ALNKVRKFAEGMRWDTKMMDHEDGPL-MPEK  216 (235)
Q Consensus       145 DlV~a~~vl~--h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-----~~~~i~~~~~~~~W~~~~~~~~~~~~-~~e~  216 (235)
                      |+|++...-.  .....---..++..+.|.|+|||.+++.....     ....+.+.+++.-..+..+..---+. ..=.
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~Wg  307 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWG  307 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceE
Confidence            9999863210  00000011578999999999999999985432     22223444444444444332211111 1245


Q ss_pred             EEEEEeccc
Q 026623          217 ILIAVKQYW  225 (235)
Q Consensus       217 ~l~~~k~~w  225 (235)
                      +.+|.|.-.
T Consensus       308 F~~as~~~~  316 (374)
T PRK01581        308 FHIAANSAY  316 (374)
T ss_pred             EEEEeCCcc
Confidence            778877544

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.66  E-value=4.8e-08  Score=81.04  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..++.....+|||+|||+|.++..|+++.   ..++++|.+ .+++.+.++-    -+..++..+..+++.+.+||.|+
T Consensus         6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi   82 (169)
T smart00650        6 VRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV   82 (169)
T ss_pred             HHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence            334444456799999999999999999873   469999999 8888776652    13345555555664446799999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++--++ .. ...+..++.+..  +.++|.+++..
T Consensus        83 ~n~Py~-~~-~~~i~~~l~~~~--~~~~~~l~~q~  113 (169)
T smart00650       83 GNLPYN-IS-TPILFKLLEEPP--AFRDAVLMVQK  113 (169)
T ss_pred             ECCCcc-cH-HHHHHHHHhcCC--CcceEEEEEEH
Confidence            875553 21 123344444322  56889998884

>TIGR00417 speE spermidine synthase

Probab=98.65  E-value=3.3e-07  Score=81.96  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=67.3

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--c--------cccccccc-cCCCCCCCccce
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--L--------IGIYHDWC-EGFSTYPRTYDL  146 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l--------~~~~~~~~-e~l~~~p~sFDl  146 (235)
                      ....++||++|||+|+++..+.+.+. ..+++.+|.+ +++..+.+.-  +        +...+..+ +-+...+++||+
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            33456999999999999988877641 3578999998 7777665531  0        11111111 111223589999


Q ss_pred             eeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++.......+ ...  -..++..+.|+|+|||.+++.-
T Consensus       149 Ii~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            99865432111 112  3588899999999999999874

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.64  E-value=1.4e-07  Score=78.72  Aligned_cols=143  Identities=14%  Similarity=0.091  Sum_probs=77.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccc------cccccCCCCCCCccceeeeh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIY------HDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~------~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+...+|||+||++|||+..+.++......|+++|...+-..-....+.+..      ....+.++...+.||+|+|.
T Consensus        19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D   98 (181)
T PF01728_consen   19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD   98 (181)
T ss_dssp             S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred             CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence            344456899999999999999999986445689999997441110000111111      11111122112799999998


Q ss_pred             hhhccCC--CCC------ChHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCCCCCCCCceE
Q 026623          151 GVFSLYE--NTC------KPEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKI  217 (235)
Q Consensus       151 ~vl~h~~--~~~------~~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~  217 (235)
                      ....--.  +..      -....|.=+...|||||.+|+--     ..+++..++...+.+++.  .+.. ..+...|.+
T Consensus        99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E~Y  175 (181)
T PF01728_consen   99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSEEY  175 (181)
T ss_dssp             ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBEEE
T ss_pred             cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccEEE
Confidence            7443110  000      11244444557799999998863     234555566655554432  2211 234468999


Q ss_pred             EEEEe
Q 026623          218 LIAVK  222 (235)
Q Consensus       218 l~~~k  222 (235)
                      |||++
T Consensus       176 lv~~~  180 (181)
T PF01728_consen  176 LVCRG  180 (181)
T ss_dssp             EESEE
T ss_pred             EEEcC
Confidence            99975

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.63  E-value=4.3e-07  Score=81.59  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=73.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK  161 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~  161 (235)
                      ...|-|+|||-+.+|..-. ..+..+++++++.         |-   +.. ....+|..++|.|++++...|.    ..+
T Consensus       181 ~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~~~---------~V---~~c-Dm~~vPl~d~svDvaV~CLSLM----gtn  242 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIASSER-HKVHSFDLVAVNE---------RV---IAC-DMRNVPLEDESVDVAVFCLSLM----GTN  242 (325)
T ss_pred             ceEEEecccchhhhhhccc-cceeeeeeecCCC---------ce---eec-cccCCcCccCcccEEEeeHhhh----ccc
Confidence            4579999999999976222 2333333333322         21   111 1244787889999998866663    248


Q ss_pred             hHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCceeEeecCC
Q 026623          162 PEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDTKMMDHE  208 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~~~~~~~  208 (235)
                      +.+++.|.+|||||||.++|.+-..-   .....+-+.+|.+++...|..
T Consensus       243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~  292 (325)
T KOG3045|consen  243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS  292 (325)
T ss_pred             HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence            89999999999999999999985432   344556678888887765544

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.9e-07  Score=85.09  Aligned_cols=118  Identities=15%  Similarity=0.241  Sum_probs=76.8

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cc-cccccCCCCCCCccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IY-HDWCEGFSTYPRTYD  145 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~-~~~~e~l~~~p~sFD  145 (235)
                      ++.+......+|||+|||+|-++..|++... ...++-+|.+ ..++.+.+-    ++-+  .+ .+.++..   .+.||
T Consensus       151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---~~kfd  226 (300)
T COG2813         151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV---EGKFD  226 (300)
T ss_pred             HHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc---ccccc
Confidence            3444433344999999999999999998743 4679999998 777755432    3332  12 1112211   25999


Q ss_pred             eeeehhhhccCCCC--CChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHH
Q 026623          146 LIHANGVFSLYENT--CKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFA  195 (235)
Q Consensus       146 lV~a~~vl~h~~~~--~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~  195 (235)
                      +|+||==||-=..-  .--.+++.+..+.|++||-++|--+.  ++-..++++.
T Consensus       227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F  280 (300)
T COG2813         227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF  280 (300)
T ss_pred             EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence            99999888732110  01238899999999999999888652  3344444443

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.61  E-value=1.1e-07  Score=81.46  Aligned_cols=110  Identities=13%  Similarity=0.185  Sum_probs=71.4

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCccc---cc-cccccCCCCCCCccceeeehhhh
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLIG---IY-HDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~---~~-~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .+|||+|||.|.+...|++.+. .-.++++|.| ..+..    |.++|+..   .. .|...+ .+.++.||+|+=-..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence            4999999999999999998763 2349999999 66653    44456643   11 121121 3455889998854444


Q ss_pred             ccC---CCC--CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHH
Q 026623          154 SLY---ENT--CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKF  194 (235)
Q Consensus       154 ~h~---~~~--~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~  194 (235)
                      ..+   ++.  ..+...+--+.++|+|||+|+|+-..-..+++.+.
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~  192 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE  192 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence            322   111  12356788899999999999999644333333333

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.57  E-value=3.5e-07  Score=67.17  Aligned_cols=94  Identities=22%  Similarity=0.326  Sum_probs=62.0

Q ss_pred             EeeeccccchH--HHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccccccC--CCCCC-Cccceeeehhh
Q 026623           85 VMDMNAGLGGF--AAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEG--FSTYP-RTYDLIHANGV  152 (235)
Q Consensus        85 VLD~GCG~G~f--aa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~--l~~~p-~sFDlV~a~~v  152 (235)
                      +||+|||+|..  ...+...+   ..++++|.+ .++.....+..      +.........  +++.+ .+||++ +...
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            99999999984  44444332   346778888 77776433321      1222222222  55445 489999 5555


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ..|...   ....+.++.|+|+|+|.+++.+..
T Consensus       128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            544322   789999999999999999999754

>PHA03411 putative methyltransferase; Provisional

Probab=98.56  E-value=1.6e-07  Score=84.89  Aligned_cols=99  Identities=14%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCCC-
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN-  158 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~-  158 (235)
                      ..+|||+|||+|.++..+..+.. ..+|+++|.+ .+++.+.++-. +..++.....+. .+++||+|+++--|.|++. 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~  142 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT  142 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence            45899999999999888866421 2479999999 89988776521 122222222222 2478999999988887531 


Q ss_pred             -CCC---------------hHHHHHHHhhhhcCCcEEEEE
Q 026623          159 -TCK---------------PEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       159 -~~~---------------~~~~L~Em~RVLRPGG~lii~  182 (235)
                       +.+               +.+.+....++|+|+|.+++.
T Consensus       143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence             111               357889999999999988776

>PRK03612 spermidine synthase; Provisional

Probab=98.55  E-value=3e-07  Score=89.64  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=79.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Cc------------cccccccccC-CCCCCCccc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GL------------IGIYHDWCEG-FSTYPRTYD  145 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl------------~~~~~~~~e~-l~~~p~sFD  145 (235)
                      +.++|||+|||+|..+..+.+++. +..|+.+|++ ++++.+++. .+            +..++.++.. +...+++||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            467999999999999999887642 3579999998 888887762 11            1112222222 222458999


Q ss_pred             eeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEe
Q 026623          146 LIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~  204 (235)
                      +|+++......+....  -+++++++.|.|||||.+++...     .+....+.+.+++....+..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~  441 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP  441 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence            9999743321110000  14688999999999999999642     33344566666666554443

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.53  E-value=3e-07  Score=78.90  Aligned_cols=121  Identities=16%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCccc--cccccccC-CC-C-CCCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLIG--IYHDWCEG-FS-T-YPRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~--~~~~~~e~-l~-~-~p~sFDlV~a~~  151 (235)
                      ...+||+|||.|.|..+++.... ..|++|+|.. ..+..    +.++++..  .++..+.. |. + .++++|-|+.++
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            34899999999999999987532 3689999998 65554    33445533  23322222 21 2 349999998632


Q ss_pred             hhc-----cCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhcc--CceeE
Q 026623          152 VFS-----LYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGM--RWDTK  203 (235)
Q Consensus       152 vl~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~--~W~~~  203 (235)
                      ==-     |.+.+=--..+|.++.|+|+|||.+.+.. ..++.+.+.+.+...  .++..
T Consensus        97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence            221     22111112599999999999999999875 455666666665553  44433

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.49  E-value=1.2e-07  Score=82.32  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=63.2

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCC-
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYP-  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p-  141 (235)
                      +.+++..+.-.+..+|||+|||+|.+++-|+..-.-+..|+.+|.. ...+.+.++    |+  +...+..+.. ...+ 
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~-g~~~~  139 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE-GWPEE  139 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG-TTGGG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh-ccccC
Confidence            4445665666667899999999999998887631112358888887 445444443    33  2233433321 2123 


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ..||.|+++.....++      .   ++.+-|||||.+++--.
T Consensus       140 apfD~I~v~~a~~~ip------~---~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIP------E---ALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             -SEEEEEESSBBSS--------H---HHHHTEEEEEEEEEEES
T ss_pred             CCcCEEEEeeccchHH------H---HHHHhcCCCcEEEEEEc
Confidence            7899999987775332      3   34456999999998643

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.48  E-value=2.7e-07  Score=81.26  Aligned_cols=98  Identities=10%  Similarity=0.054  Sum_probs=71.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Cc-----------------cccccccccCCCCC-
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GL-----------------IGIYHDWCEGFSTY-  140 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl-----------------~~~~~~~~e~l~~~-  140 (235)
                      ...+||+.|||.|.=+..|+++|   .+|+++|+| ..+..++++ ++                 +..+..+.-.++.. 
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            35699999999999999999987   369999999 667665442 21                 11222211123321 


Q ss_pred             -C-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          141 -P-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       141 -p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                       . +.||+|.=...|.+++. ..-.+...-|.++|||||.+++-
T Consensus       120 ~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             cccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence             2 68999999999999853 34579999999999999998776

>PLN02366 spermidine synthase

Probab=98.47  E-value=4.6e-07  Score=83.08  Aligned_cols=101  Identities=17%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCC-CCccce
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTY-PRTYDL  146 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~-p~sFDl  146 (235)
                      .+.++|||+|||.|+++.++.+.+ .+..|+.+|+. .+++.+.+.      ++    +..+++.+.. +... ++.||+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            346899999999999999998874 24578888887 677766553      11    1122222111 1212 478999


Q ss_pred             eeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |++...-.+.+. ..  -..++..+.|.|+|||.+++.
T Consensus       169 Ii~D~~dp~~~~-~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        169 IIVDSSDPVGPA-QELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEEcCCCCCCch-hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            998543322110 01  147899999999999999875

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.46  E-value=9.9e-07  Score=77.74  Aligned_cols=107  Identities=23%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------cccc-ccccccCCCCCC-Cccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------LIGI-YHDWCEGFSTYP-RTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------l~~~-~~~~~e~l~~~p-~sFDlV~a~  150 (235)
                      ...+|||+|||||+|+..|++.+  +..|+++|.+ +|+.......       .... ...|.+ ++ .+ ..||+++++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~DvsfiS  150 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFIS  150 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEee
Confidence            46789999999999999999886  3579999999 6887532221       1111 112222 22 23 467776653


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE-------------------eC---hHHHHHHHHHHhccCceeE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR-------------------DE---VDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------d~---~~~~~~i~~~~~~~~W~~~  203 (235)
                      .           ..+|..|.+.|+| |.+++.                   |.   ...++++...+.+..|.+.
T Consensus       151 ~-----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~  213 (228)
T TIGR00478       151 L-----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK  213 (228)
T ss_pred             h-----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence            2           3457777888888 766655                   21   1235666666777888765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.46  E-value=1.2e-07  Score=84.04  Aligned_cols=97  Identities=13%  Similarity=0.188  Sum_probs=78.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---Ccccc-ccccccCCCCCCCccceeeehhhhcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---GLIGI-YHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---gl~~~-~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ....++|+|||.|..+..|...+  +-.++-.|.| .|++-+.+-   ++... ....-|.|+|.+++||+|+++..+|.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            35689999999999999999887  4578899999 999876554   33221 12333678888899999999999987


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ..   ++...+..++-+|||.|.||-+
T Consensus       150 ~N---dLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  150 TN---DLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hc---cCchHHHHHHHhcCCCccchhH
Confidence            63   6789999999999999999987

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.45  E-value=1.3e-07  Score=85.45  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=71.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      ...+||+|||.|.+.   ..++  -..+.+.|.+ ..+..+...|-.......+-.+|+-+.+||.+....|+||+..++
T Consensus        46 gsv~~d~gCGngky~---~~~p--~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~  120 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYL---GVNP--LCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE  120 (293)
T ss_pred             cceeeecccCCcccC---cCCC--cceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence            567999999999752   2223  1247889998 444444444432344445566787779999999999999998777


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEE
Q 026623          161 KPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      --..+|+|+-|+|||||...|-
T Consensus       121 RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  121 RRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             HHHHHHHHHHHHhcCCCceEEE
Confidence            7789999999999999995554

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.44  E-value=1.1e-06  Score=80.05  Aligned_cols=122  Identities=16%  Similarity=0.189  Sum_probs=79.4

Q ss_pred             ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccch----HHHHHhcC-C--CceeEEeecCcc-ccHHHHHHc--
Q 026623           55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGG----FAAALESP-K--SWVMNVVPTTAK-NTLGVIYER--  124 (235)
Q Consensus        55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~----faa~L~~~-~--~~~~~V~~~D~s-~~L~~~~~R--  124 (235)
                      .|=.|...|.......   .   .....-+|...||.||.    +|..|.+. +  .+...|++.|++ ..|+.|.+-  
T Consensus        95 ~FFRd~~~f~~L~~~~---~---~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y  168 (287)
T PRK10611         95 AFFREAHHFPILAEHA---R---RRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY  168 (287)
T ss_pred             CccCCcHHHHHHHHHH---H---hcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence            4556666655444321   1   11123699999999994    55555542 1  123579999999 888865331  


Q ss_pred             ------Ccc----------------c--------------cccccccCCCCC-CCccceeeehhhhccCCCCCChHHHHH
Q 026623          125 ------GLI----------------G--------------IYHDWCEGFSTY-PRTYDLIHANGVFSLYENTCKPEDILL  167 (235)
Q Consensus       125 ------gl~----------------~--------------~~~~~~e~l~~~-p~sFDlV~a~~vl~h~~~~~~~~~~L~  167 (235)
                            ++.                +              ..|+..+ .++. ++.||+|+|.+||.|+. ......++.
T Consensus       169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~  246 (287)
T PRK10611        169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA-KQWAVPGPFDAIFCRNVMIYFD-KTTQERILR  246 (287)
T ss_pred             CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC-CCCccCCCcceeeHhhHHhcCC-HHHHHHHHH
Confidence                  110                0              0133333 1222 38999999999999983 346789999


Q ss_pred             HHhhhhcCCcEEEEEeC
Q 026623          168 EMDRILRPEGAVIFRDE  184 (235)
Q Consensus       168 Em~RVLRPGG~lii~d~  184 (235)
                      .+.+.|+|||+|++...
T Consensus       247 ~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        247 RFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             HHHHHhCCCcEEEEeCc
Confidence            99999999999998864

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.42  E-value=3.9e-07  Score=85.38  Aligned_cols=97  Identities=21%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...++|+|||+|+...++..-.  ..++++++.+ ..+....+    .++   -..+..|+-.-||.+++||.+-+..+.
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             cccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            3489999999999888887643  2457788776 32222111    111   011344455567778999999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .|.+   +.+.++.|++|||+|||+++.-+
T Consensus       189 ~~~~---~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  189 CHAP---DLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             ccCC---cHHHHHHHHhcccCCCceEEeHH
Confidence            9986   78999999999999999999875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.40  E-value=5.5e-06  Score=71.00  Aligned_cols=121  Identities=21%  Similarity=0.250  Sum_probs=83.5

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---c-Cccc--cccccc-cCCCCCCCccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---R-GLIG--IYHDWC-EGFSTYPRTYD  145 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---R-gl~~--~~~~~~-e~l~~~p~sFD  145 (235)
                      +..|...+...++|+|||+|+.+..+...+. ...|+++|.. +++..+.+   | |+.+  .+..++ +.|+-.+ +||
T Consensus        27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d  104 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD  104 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence            4456667778999999999999888873221 4579999987 66664332   2 4321  222221 2344334 899


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCc-eeE
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRW-DTK  203 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W-~~~  203 (235)
                      .|+....       -.++.+|.-...-|||||.+++.- +.+....+-...+.+.+ ++.
T Consensus       105 aiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~  157 (187)
T COG2242         105 AIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV  157 (187)
T ss_pred             EEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence            9998655       257899999999999999999995 34555566666777777 544

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.40  E-value=4.8e-06  Score=79.45  Aligned_cols=142  Identities=18%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--ccccccccc-CC---C
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCE-GF---S  138 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e-~l---~  138 (235)
                      |..+++.+......+|||+|||+|.++..|+...   ..|+++|.+ +++..+.+.    |+  +..+....+ .+   +
T Consensus       286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~  362 (443)
T PRK13168        286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP  362 (443)
T ss_pred             HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence            3444444544445799999999999999998764   479999999 899876653    33  122222221 12   2


Q ss_pred             CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeE---eecCCCCCCCC
Q 026623          139 TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTK---MMDHEDGPLMP  214 (235)
Q Consensus       139 ~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~---~~~~~~~~~~~  214 (235)
                      +.+++||+|+++     - .+..+..++..+.+ |+|++.++++=++.. ..-+..+.+ -.|++.   .+|.=....+-
T Consensus       363 ~~~~~fD~Vi~d-----P-Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~Hv  434 (443)
T PRK13168        363 WALGGFDKVLLD-----P-PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHV  434 (443)
T ss_pred             hhcCCCCEEEEC-----c-CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcE
Confidence            234789999862     1 22334566665555 699999999966543 334444433 236654   22322233355


Q ss_pred             ceEEEEEe
Q 026623          215 EKILIAVK  222 (235)
Q Consensus       215 e~~l~~~k  222 (235)
                      |.+.+.+|
T Consensus       435 E~v~lL~r  442 (443)
T PRK13168        435 ESMALFER  442 (443)
T ss_pred             EEEEEEEe
Confidence            66655443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.40  E-value=9.6e-07  Score=83.55  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccc-cCCCC---CCCccceee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWC-EGFST---YPRTYDLIH  148 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~-e~l~~---~p~sFDlV~  148 (235)
                      ..+|||+|||+|+|+.+.+..+  ...|+++|.+ .+++.+.+.    |+.    ..++..+ +.+..   ..++||+|+
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            5789999999999987655444  3479999999 888865542    432    1222211 11111   136899999


Q ss_pred             ehhhhccCCCC-------CChHHHHHHHhhhhcCCcEEEEEeCh------HHHHHHHHHHhccCceeE
Q 026623          149 ANGVFSLYENT-------CKPEDILLEMDRILRPEGAVIFRDEV------DALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       149 a~~vl~h~~~~-------~~~~~~L~Em~RVLRPGG~lii~d~~------~~~~~i~~~~~~~~W~~~  203 (235)
                      ++-=.- .++.       .+...++.-..++|+|||.+++..+.      ++.+.+.+-+..-.-++.
T Consensus       299 lDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~  365 (396)
T PRK15128        299 MDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ  365 (396)
T ss_pred             ECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence            852110 0011       13445666788999999999986532      234444444444444444

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.36  E-value=3.1e-06  Score=77.28  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=81.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCC-CCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFST-YPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~-~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.|+..|+..+   ..|+++|.+ .+++.+.+.    |+  +..+....+.+.. .++.||+|+++  
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d--  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN--  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence            35789999999999999999864   479999999 888876543    44  2223322232221 23679999975  


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEe---ecCCCCCCCCceEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKM---MDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~---~~~~~~~~~~e~~l~~~k  222 (235)
                          |.+..+...+.++..-++|++.++++-++.. ...++.+   -.|++..   .|-=....+-|.+..-++
T Consensus       248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~v~~l~r  314 (315)
T PRK03522        248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEVLTLLVR  314 (315)
T ss_pred             ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence                3344444555566666899999999966653 3344444   2466542   222223335566655543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.34  E-value=5.5e-07  Score=78.81  Aligned_cols=102  Identities=21%  Similarity=0.305  Sum_probs=66.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-----Ccccc-ccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-----GLIGI-YHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-----gl~~~-~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...++||.|||-|..+..|+-.-  .-.|.-++.. ..++.+.+.     +-++. ++.--|.+.+.++.||+|.+..++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            46789999999999999886542  2245556665 667766632     22222 211113333234799999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      .|+.+ .++..+|.-+..-|+|+|.+++-|+.
T Consensus       133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~  163 (218)
T PF05891_consen  133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENV  163 (218)
T ss_dssp             GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecC
Confidence            99965 68999999999999999999999743

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PHA03412 putative methyltransferase; Provisional

Probab=98.29  E-value=2.1e-06  Score=76.28  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=61.3

Q ss_pred             CceEeeeccccchHHHHHhcC-C-CceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCC
Q 026623           82 YRNVMDMNAGLGGFAAALESP-K-SWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~-~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      ..+|||+|||+|.++.+++.+ . ....+|+++|+. .++..+.+.-. +..++......+ .+.+||+|++|==|.-..
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~-~~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTE-FDTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc-ccCCccEEEECCCCCCcc
Confidence            459999999999999888753 1 013479999999 88887764421 122222222222 357999999965443111


Q ss_pred             --C------CCC-hHHHHHHHhhhhcCCcE
Q 026623          158 --N------TCK-PEDILLEMDRILRPEGA  178 (235)
Q Consensus       158 --~------~~~-~~~~L~Em~RVLRPGG~  178 (235)
                        +      ... ...++....|.|+||+.
T Consensus       129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        129 TSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence              1      112 34688888998888886

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.29  E-value=2.8e-06  Score=73.82  Aligned_cols=133  Identities=19%  Similarity=0.301  Sum_probs=86.9

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCcccc----ccccccC-------CCCCCCcccee
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLIGI----YHDWCEG-------FSTYPRTYDLI  147 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~~----~~~~~e~-------l~~~p~sFDlV  147 (235)
                      +||.||||||.-+.+++..-. ...-.|.|.. +.+.-    +.+.|+...    ..|.++.       -+.++++||.|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            699999999988888876421 1345688887 33332    334455221    2222221       12345899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-----------------------ChH----HHHHHHHHHhccCc
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-----------------------EVD----ALNKVRKFAEGMRW  200 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-----------------------~~~----~~~~i~~~~~~~~W  200 (235)
                      +|.+++|-. .+...+.++.+..|+|+|||.|++--                       +.+    -++.+..++.+-..
T Consensus       107 ~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL  185 (204)
T PF06080_consen  107 FCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL  185 (204)
T ss_pred             eehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence            999999765 45567899999999999999999871                       100    14557777777666


Q ss_pred             eeE-eecCCCCCCCCceEEEEEe
Q 026623          201 DTK-MMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       201 ~~~-~~~~~~~~~~~e~~l~~~k  222 (235)
                      +.. .++   -| -.+++||.+|
T Consensus       186 ~l~~~~~---MP-ANN~~Lvfrk  204 (204)
T PF06080_consen  186 ELEEDID---MP-ANNLLLVFRK  204 (204)
T ss_pred             ccCcccc---cC-CCCeEEEEeC
Confidence            643 222   22 4578888876

The function of this family is unknown.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.28  E-value=9.4e-07  Score=77.72  Aligned_cols=96  Identities=9%  Similarity=0.098  Sum_probs=62.8

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCCC----C-CCcc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFST----Y-PRTY  144 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~~----~-p~sF  144 (235)
                      .+.++|||+|||+|.-+..|+.. +. ...|+.+|.+ +++..+.+.    |+   +..+++.+ +.|+.    . ..+|
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            34679999999999866555542 21 2369999998 777765543    43   22222221 22221    1 3689


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+|++..-      ......++.++.|.|||||.+++.
T Consensus       146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99987422      124568899999999999998875

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.27  E-value=4.2e-06  Score=79.31  Aligned_cols=121  Identities=15%  Similarity=0.157  Sum_probs=75.8

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CC---CCC
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FS---TYP  141 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~---~~p  141 (235)
                      ++..+......+|||+|||+|.++..|++..   ..|+++|.+ ++++.+.+.    |+  +..++..++. ++   +.+
T Consensus       284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~  360 (431)
T TIGR00479       284 ALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG  360 (431)
T ss_pred             HHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence            3434443445689999999999999998753   369999999 888876553    33  2233333332 22   123


Q ss_pred             CccceeeehhhhccCCCCCC-hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          142 RTYDLIHANGVFSLYENTCK-PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~-~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      ++||+|+.+     - .+.. ...++.++.+ |+|+|.++++-++..+.+--+.+..-.|++.
T Consensus       361 ~~~D~vi~d-----P-Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~  416 (431)
T TIGR00479       361 QIPDVLLLD-----P-PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT  416 (431)
T ss_pred             CCCCEEEEC-----c-CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence            689999862     1 1222 3566776665 8999999998766654333333334446554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.26  E-value=5e-06  Score=75.03  Aligned_cols=128  Identities=17%  Similarity=0.272  Sum_probs=84.4

Q ss_pred             ccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccc----hHHHHHhcCC----CceeEEeecCcc-ccHHHHHH-
Q 026623           55 SYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLG----GFAAALESPK----SWVMNVVPTTAK-NTLGVIYE-  123 (235)
Q Consensus        55 ~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G----~faa~L~~~~----~~~~~V~~~D~s-~~L~~~~~-  123 (235)
                      .|=.+.+.|....++-.. ++..... +.-+|.-+||+||    ++|..|.+..    .+...|.+.|++ ..|+.|.. 
T Consensus        70 ~FFR~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G  148 (268)
T COG1352          70 EFFRDPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG  148 (268)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence            355666666655544222 1111112 3669999999999    3555555543    246789999998 77775422 


Q ss_pred             --------cCcc-------------c--------------cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHH
Q 026623          124 --------RGLI-------------G--------------IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLE  168 (235)
Q Consensus       124 --------Rgl~-------------~--------------~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~E  168 (235)
                              +++.             +              ..|+..+.-+ +++-||+|+|-+|+-++ +...-.+++..
T Consensus       149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF-d~~~q~~il~~  226 (268)
T COG1352         149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF-DEETQERILRR  226 (268)
T ss_pred             CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee-CHHHHHHHHHH
Confidence                    2221             0              0143333223 66889999999999988 44455799999


Q ss_pred             HhhhhcCCcEEEEEeCh
Q 026623          169 MDRILRPEGAVIFRDEV  185 (235)
Q Consensus       169 m~RVLRPGG~lii~d~~  185 (235)
                      ++..|+|||++++-.+.
T Consensus       227 f~~~L~~gG~LflG~sE  243 (268)
T COG1352         227 FADSLKPGGLLFLGHSE  243 (268)
T ss_pred             HHHHhCCCCEEEEccCc
Confidence            99999999999998654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.24  E-value=7.4e-06  Score=69.98  Aligned_cols=133  Identities=20%  Similarity=0.369  Sum_probs=84.5

Q ss_pred             chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc-c---cHHH-HHHcCcc--cc
Q 026623           59 DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK-N---TLGV-IYERGLI--GI  129 (235)
Q Consensus        59 d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~---~L~~-~~~Rgl~--~~  129 (235)
                      ..+.|.+++.+-...++.+..... +++|+|+|.|  |+..++....   .+++-+|.. .   .|.. +.+-||.  ..
T Consensus        27 ~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v  102 (184)
T PF02527_consen   27 PEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNVEV  102 (184)
T ss_dssp             HHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence            357777777654545555555433 7999999999  5555555432   357788875 3   3332 3334663  35


Q ss_pred             ccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCceeE
Q 026623          130 YHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDTK  203 (235)
Q Consensus       130 ~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~~  203 (235)
                      ++...|. +.++..||+|+|       +....+..++.-+.+.|+|||.+++--....   +...++..+.+.++..
T Consensus       103 ~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~  171 (184)
T PF02527_consen  103 INGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL  171 (184)
T ss_dssp             EES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred             EEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence            6766776 446699999998       3345788999999999999999999975543   4444555666666654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.23  E-value=3.1e-06  Score=78.13  Aligned_cols=112  Identities=16%  Similarity=0.227  Sum_probs=71.2

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---------c---cccccccc------cCCCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---------L---IGIYHDWC------EGFSTY  140 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---------l---~~~~~~~~------e~l~~~  140 (235)
                      .+++.+||+|||-||=+...-+.+  .-.++++|+. -.++.+..|-         .   ...+...|      +.+++.
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            357789999999998544443333  2358888887 5555554441         1   11122222      234433


Q ss_pred             CCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh-H-HHHHHHH
Q 026623          141 PRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEV-D-ALNKVRK  193 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~-~~~~i~~  193 (235)
                      +..||+|-|.+.||+- ..-.....+|+-+.+.|||||+||-+-+. + ++.+++.
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~  249 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA  249 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence            4559999999999862 22234558899999999999999998543 3 3444443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=1.9e-05  Score=70.58  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=78.8

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccccc----ccccccCCCCCCCccce
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIGI----YHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~~----~~~~~e~l~~~p~sFDl  146 (235)
                      ++-.++.+|||.|.|+|.++++|+.. +. ...|+..+.- +.++.|.+.    |+...    .-|-++..  .++.||.
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDa  166 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDA  166 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCE
Confidence            45566889999999999999999952 22 3478888887 777766543    44221    12223322  3469999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCc
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRW  200 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W  200 (235)
                      |+.        |-.++-.+|.-++.+|+|||.+++-- +.+.+.++-..++..+|
T Consensus       167 v~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~  213 (256)
T COG2519         167 VFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF  213 (256)
T ss_pred             EEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence            987        55688899999999999999998875 34544454444555566

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.17  E-value=5e-06  Score=69.81  Aligned_cols=121  Identities=25%  Similarity=0.307  Sum_probs=64.2

Q ss_pred             chHHHHHHHH--HHHHHhh----hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHH---Hc-C--c
Q 026623           59 DSKLWKKHVN--AYKKMNS----LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIY---ER-G--L  126 (235)
Q Consensus        59 d~~~W~~~v~--~y~~~l~----~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~---~R-g--l  126 (235)
                      ....|.....  .|.....    ........+||++|||+|-.+..++... ....|+..|.++.++.+.   ++ +  .
T Consensus        17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~   95 (173)
T PF10294_consen   17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNEVLELLRRNIELNGSLL   95 (173)
T ss_dssp             ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S-HHHHHHHHHHTT----
T ss_pred             cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccchhhHHHHHHHHhccccc
Confidence            3566765554  3443210    1223456799999999995554554441 135688888876444322   21 1  1


Q ss_pred             ----cccccccccCCC--C-CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          127 ----IGIYHDWCEGFS--T-YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       127 ----~~~~~~~~e~l~--~-~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                          .....+|.+.++  . .++.||+|+++.++..-   ...+.++.=+.++|+|+|.+++..
T Consensus        96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen   96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             cccccCcEEEecCcccccccccccCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEe
Confidence                113467776441  1 23789999999999743   367888889999999999988875

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02672 methionine S-methyltransferase

Probab=98.15  E-value=8.8e-06  Score=85.25  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc------------------cccc-cccccCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL------------------IGIY-HDWCEGF  137 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl------------------~~~~-~~~~e~l  137 (235)
                      ..+|||+|||+|.++..|+.... ...|+++|++ +++..+.+.    ++                  +..+ .|+.+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            35899999999999999987521 2379999999 888876332    11                  1112 2333332


Q ss_pred             CCCCCccceeeehh---------hhc-----cCC--------CCCCh-------------HHHHHHHhhhhcCCcEEEEE
Q 026623          138 STYPRTYDLIHANG---------VFS-----LYE--------NTCKP-------------EDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       138 ~~~p~sFDlV~a~~---------vl~-----h~~--------~~~~~-------------~~~L~Em~RVLRPGG~lii~  182 (235)
                      ......||+|++|=         .++     |-|        +.+.+             ..++.+..++|||||++++-
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            21112699999851         111     111        11222             57899999999999999988


Q ss_pred             eChHHHHHHH-HHHhccCcee
Q 026623          183 DEVDALNKVR-KFAEGMRWDT  202 (235)
Q Consensus       183 d~~~~~~~i~-~~~~~~~W~~  202 (235)
                      -....-+.+. ++.+.-.|+.
T Consensus       278 iG~~q~~~v~~~l~~~~gf~~  298 (1082)
T PLN02672        278 MGGRPGQAVCERLFERRGFRI  298 (1082)
T ss_pred             ECccHHHHHHHHHHHHCCCCe
Confidence            6665556666 4666544543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.13  E-value=5.2e-06  Score=72.57  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH-cCcccc------c--------cccccC-CCC-
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE-RGLIGI------Y--------HDWCEG-FST-  139 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~-Rgl~~~------~--------~~~~e~-l~~-  139 (235)
                      ......+||+-|||.|.-+..|+++|   .+|+++|+| ..++.+++ +++...      .        .-+|.. |.. 
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~  110 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP  110 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence            34446799999999999999999987   489999999 67776544 443111      0        001111 221 


Q ss_pred             -CC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcE--EEEEe-------ChHH---HHHHHHHHhccCceeEe
Q 026623          140 -YP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGA--VIFRD-------EVDA---LNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       140 -~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~--lii~d-------~~~~---~~~i~~~~~~~~W~~~~  204 (235)
                       .. ++||+|.=...|.-++ ...-.+...-|.++|||||.  ++..+       .+++   .++|+.++. -.|++..
T Consensus       111 ~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~  187 (218)
T PF05724_consen  111 PEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE  187 (218)
T ss_dssp             GSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred             hhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence             22 5799999777777774 34567999999999999999  33332       1221   456666666 7777653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.10  E-value=9.9e-06  Score=71.43  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCc--ccccccccc-CCCC-CC-Cccceeeehhh
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGL--IGIYHDWCE-GFST-YP-RTYDLIHANGV  152 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl--~~~~~~~~e-~l~~-~p-~sFDlV~a~~v  152 (235)
                      ..+|+||||.|.|...++.+.. ..|+.|++.. ..+.    .+.+.|+  +..+...+. -|.. .+ ++.|-|+.++=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            4799999999999999998643 3488888886 4333    4556676  223333222 2343 34 59999986332


Q ss_pred             hc-----cCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHH-HHHHHh
Q 026623          153 FS-----LYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNK-VRKFAE  196 (235)
Q Consensus       153 l~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~-i~~~~~  196 (235)
                      =-     |...|=--..+|.++.|+|+|||.|.+.+.. ++.+. +.....
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~  179 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLE  179 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHh
Confidence            21     2111112258999999999999999997544 44444 444433

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.3e-05  Score=69.97  Aligned_cols=99  Identities=20%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH-HHHc----Cc--cccccccccCCCCCC-Ccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV-IYER----GL--IGIYHDWCEGFSTYP-RTY  144 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~-~~~R----gl--~~~~~~~~e~l~~~p-~sF  144 (235)
                      ++..|...+..+||+||||+|..+|-|++..   ..|+.++.-..|.. |.++    |+  +...|++. ..-+.+ ..|
T Consensus        64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~~~~aPy  139 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHGDG-SKGWPEEAPY  139 (209)
T ss_pred             HHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-ccCCCCCCCc
Confidence            4555666678999999999999999998753   36888887755543 3322    43  22333221 112223 899


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |.|+.+.....+|      ..|   .+-|||||.+++-..
T Consensus       140 D~I~Vtaaa~~vP------~~L---l~QL~~gGrlv~PvG  170 (209)
T COG2518         140 DRIIVTAAAPEVP------EAL---LDQLKPGGRLVIPVG  170 (209)
T ss_pred             CEEEEeeccCCCC------HHH---HHhcccCCEEEEEEc
Confidence            9999988886654      333   346999999999865

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.09  E-value=1.8e-05  Score=74.15  Aligned_cols=109  Identities=11%  Similarity=0.190  Sum_probs=69.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCC-CCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGF-STYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l-~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||++||+|.|+..++..+   ..|+++|.+ .++..+.+.    |+  +..+....+.+ +.....||+|+++   
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence            4689999999999999998764   469999999 888866543    32  11222222221 1112569999874   


Q ss_pred             ccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeE
Q 026623          154 SLYENTCKP-EDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTK  203 (235)
Q Consensus       154 ~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~  203 (235)
                         |.+..+ ..++..+ .-++|++.++++-++.. ..-+..+   -.|++.
T Consensus       308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~  352 (374)
T TIGR02085       308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE  352 (374)
T ss_pred             ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence               333333 3444444 45899999999977664 3445544   347665

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.04  E-value=5.2e-05  Score=69.20  Aligned_cols=125  Identities=20%  Similarity=0.288  Sum_probs=88.2

Q ss_pred             CCCceEeeeccccchHHH-HHhcCCCceeEEeecCcc-ccHH----HHHHcCcccc---ccccccC---CCCCCCcccee
Q 026623           80 RRYRNVMDMNAGLGGFAA-ALESPKSWVMNVVPTTAK-NTLG----VIYERGLIGI---YHDWCEG---FSTYPRTYDLI  147 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa-~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~---~~~~~e~---l~~~p~sFDlV  147 (235)
                      +..-+||||.||.|.+.- +|.+.+.-...|.-.|.+ ..++    .+.+|||-..   .+..|=.   +....-..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            456699999999998644 444444324578888998 5555    5888998554   2222211   11122457999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe--ChHHHHHHHHHHhc----cCceeEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD--EVDALNKVRKFAEG----MRWDTKM  204 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d--~~~~~~~i~~~~~~----~~W~~~~  204 (235)
                      +.+.+++.+++..-+...|.-+.+.|.|||++|.+-  -++.++.|.+.+.+    --|..+.
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr  276 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR  276 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence            999999999764446678999999999999999997  34567777777755    4687763

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.02  E-value=1.5e-05  Score=70.80  Aligned_cols=125  Identities=22%  Similarity=0.246  Sum_probs=76.9

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCc----ccccccccc-CCCCCC-Cccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGL----IGIYHDWCE-GFSTYP-RTYD  145 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl----~~~~~~~~e-~l~~~p-~sFD  145 (235)
                      .+.....+|||.+.|.|.+|..-.+++.  ..|.-+... +.|+.+.    .|+|    +..++..|. ....++ .+||
T Consensus       130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD  207 (287)
T COG2521         130 VKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD  207 (287)
T ss_pred             eccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence            4555678999999999999988888874  234444333 4343321    2333    233343333 344455 8899


Q ss_pred             eeee-hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe--------ChHHHHHHHHHHhccCceeEe
Q 026623          146 LIHA-NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD--------EVDALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       146 lV~a-~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d--------~~~~~~~i~~~~~~~~W~~~~  204 (235)
                      +|+- -=-|++-.. ---+.+-.|++|||||||.++=-.        ..+...++.+.+++..+.+..
T Consensus       208 aIiHDPPRfS~Age-LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         208 AIIHDPPRFSLAGE-LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             eEeeCCCccchhhh-HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence            9863 111221100 001589999999999999987653        223456777888888888554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.00  E-value=1.8e-05  Score=77.01  Aligned_cols=120  Identities=9%  Similarity=0.117  Sum_probs=74.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCcccc--ccccccCC-CCCC-Cccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGLIGI--YHDWCEGF-STYP-RTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~--~~~~~e~l-~~~p-~sFDlV~a~~  151 (235)
                      ....+||+|||.|.|+..++.... ..|++|++.. .-+.    .+.++|+...  +.+..+.+ ..++ +++|-|+.++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            467899999999999999998633 3589999997 4333    3444555222  22111111 2344 9999998743


Q ss_pred             hhc-----cCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHH-HhccCce
Q 026623          152 VFS-----LYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKF-AEGMRWD  201 (235)
Q Consensus       152 vl~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~-~~~~~W~  201 (235)
                      ==-     |.+.|=--..+|.++.|+|||||.+.+.. ..++.+.+... ...-.|+
T Consensus       426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~  482 (506)
T PRK01544        426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE  482 (506)
T ss_pred             CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence            321     22111112589999999999999888874 55554443333 3333444

>PRK04148 hypothetical protein; Provisional

Probab=97.97  E-value=2.3e-05  Score=63.94  Aligned_cols=93  Identities=13%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             hCCCCCceEeeeccccch-HHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC--Cccceeeehhh
Q 026623           77 IGTRRYRNVMDMNAGLGG-FAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP--RTYDLIHANGV  152 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~-faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p--~sFDlV~a~~v  152 (235)
                      +...+..+|||+|||+|. ++..|.+.+   .+|+++|.+ ..++.+.++++....-|..+  |...  +.+|+|.+   
T Consensus        12 ~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liys---   83 (134)
T PRK04148         12 YEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYS---   83 (134)
T ss_pred             cccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEE---
Confidence            333345789999999995 999999876   479999999 88888888887555544443  2222  78999987   


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                         ++...++...+.++.+-+  |.-++|.
T Consensus        84 ---irpp~el~~~~~~la~~~--~~~~~i~  108 (134)
T PRK04148         84 ---IRPPRDLQPFILELAKKI--NVPLIIK  108 (134)
T ss_pred             ---eCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence               222234555565555533  3445555

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.95  E-value=1.9e-05  Score=68.14  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=57.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccc-cCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWC-EGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~-e~l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.++..++.++  ...|+++|.+ +.+..+.+.    |+  +..++..+ +.++...+.||+|+++==+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            4589999999999998654444  2479999998 666654332    32  11222222 2232223579999984332


Q ss_pred             ccCCCCCC-hHHHHHHHhh--hhcCCcEEEEEeCh
Q 026623          154 SLYENTCK-PEDILLEMDR--ILRPEGAVIFRDEV  185 (235)
Q Consensus       154 ~h~~~~~~-~~~~L~Em~R--VLRPGG~lii~d~~  185 (235)
                      .     .. .+.++.-+..  +|+|+|.+++.-..
T Consensus       132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        132 R-----KGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            1     12 2334443333  47999999998654

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.92  E-value=1.4e-05  Score=71.70  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=50.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---ccccccccccCCCCCCCccceeeehhh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---LIGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---l~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      +......+|||+|||+|.++..|++++.   .|+++|.+ ++++.+.++.   -+..++.....+++.+-.+|.|++|-=
T Consensus        38 l~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP  114 (272)
T PRK00274         38 AGPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP  114 (272)
T ss_pred             cCCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence            3434467899999999999999998752   69999999 8998876652   233344444445422222588887643

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.92  E-value=3.4e-05  Score=74.24  Aligned_cols=144  Identities=17%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             ccCCcccCCCCcccccCccccccccccccchHHHHHHHHHHHHHh-----hhhCCC----CCceEeeeccccchHHHHHh
Q 026623           30 KKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMN-----SLIGTR----RYRNVMDMNAGLGGFAAALE  100 (235)
Q Consensus        30 ~~wp~rl~~~p~rl~~~~~~g~~~~~f~~d~~~W~~~v~~y~~~l-----~~l~~~----~~r~VLD~GCG~G~faa~L~  100 (235)
                      ..+..+|..|..=|.+. ....+.+.|+.|.-.    -..|.+.+     ......    +...|||+|||+|-+...-+
T Consensus       131 ~~~~d~Lq~PLqPl~dn-L~s~tYe~fE~D~vK----Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al  205 (448)
T PF05185_consen  131 SGYEDYLQAPLQPLMDN-LESQTYEVFEKDPVK----YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFAL  205 (448)
T ss_dssp             ------EE----TTTS----HHHHHHHCC-HHH----HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHH
T ss_pred             hhchhhccCCCCCchhh-hccccHhhHhcCHHH----HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHH
Confidence            34555565554334332 222356789888764    22333322     222222    13579999999998754332


Q ss_pred             cCC---CceeEEeecCcc-ccHHHH----HHcCc---cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHH
Q 026623          101 SPK---SWVMNVVPTTAK-NTLGVI----YERGL---IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEM  169 (235)
Q Consensus       101 ~~~---~~~~~V~~~D~s-~~L~~~----~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em  169 (235)
                      +.+   .-...|.+++.+ ++....    ...|.   +..++...+.+. .|...|+|++-.+=+.. +.+-+...|.-.
T Consensus       206 ~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg-~nEl~pE~Lda~  283 (448)
T PF05185_consen  206 QAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFG-DNELSPECLDAA  283 (448)
T ss_dssp             HTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTB-TTTSHHHHHHHG
T ss_pred             HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCcc-ccccCHHHHHHH
Confidence            211   113468888887 333222    33343   556676666665 45799999984332222 334566789999


Q ss_pred             hhhhcCCcEEE
Q 026623          170 DRILRPEGAVI  180 (235)
Q Consensus       170 ~RVLRPGG~li  180 (235)
                      +|.|||||.+|
T Consensus       284 ~rfLkp~Gi~I  294 (448)
T PF05185_consen  284 DRFLKPDGIMI  294 (448)
T ss_dssp             GGGEEEEEEEE
T ss_pred             HhhcCCCCEEe
Confidence            99999999865

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.91  E-value=1.7e-05  Score=73.70  Aligned_cols=100  Identities=16%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcCc---cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +.+.|||+|||+|-++..=++.|  ...|.++|.|++.+.    +.+.|+   +..+..-.|.+.......|+|++...=
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            46789999999998877666666  567999999976664    444454   233333345443125999999983321


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.+-...=+..+|.-=+|=|+|||.++=+
T Consensus       138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  138 YFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            11100012457788889999999987533

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.88  E-value=0.00031  Score=63.90  Aligned_cols=155  Identities=14%  Similarity=0.160  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---ccc
Q 026623           59 DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGI  129 (235)
Q Consensus        59 d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~  129 (235)
                      +++.|-..|.+-.......   ....|||+|||+|-++..|+.. +  ...|+++|.| ..+..+.+.    ++   +..
T Consensus       129 ETEE~V~~Vid~~~~~~~~---~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v  203 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNSEHS---KHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV  203 (328)
T ss_pred             cHHHHHHHHHHHHhhhhhc---ccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence            4666666665422222222   2337999999999999888874 3  3468999999 777766553    22   333


Q ss_pred             ccc-----cccCCCCCCCccceeeehh--hhc------------cCC-------CCC--ChHHHHHHHhhhhcCCcEEEE
Q 026623          130 YHD-----WCEGFSTYPRTYDLIHANG--VFS------------LYE-------NTC--KPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       130 ~~~-----~~e~l~~~p~sFDlV~a~~--vl~------------h~~-------~~~--~~~~~L~Em~RVLRPGG~lii  181 (235)
                      .|.     +.+..+...+.+|+++||=  +.+            |.+       ..+  .+..++.=.-|.|+|||.+.+
T Consensus       204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            333     3333443449999999852  222            110       000  012455667899999999999


Q ss_pred             EeC-----hHHHHHH-HHHHhccCceeEee-cCCCCCCCCceEEEEEe
Q 026623          182 RDE-----VDALNKV-RKFAEGMRWDTKMM-DHEDGPLMPEKILIAVK  222 (235)
Q Consensus       182 ~d~-----~~~~~~i-~~~~~~~~W~~~~~-~~~~~~~~~e~~l~~~k  222 (235)
                      .-.     ......+ ....+.--|.+.++ |.-    +.+++++..+
T Consensus       284 e~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~----~~~Rfv~i~r  327 (328)
T KOG2904|consen  284 ELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFA----GRPRFVIIHR  327 (328)
T ss_pred             EecccccCcHHHHHHHHhchhhccchhheeeccc----CCcceEEEEe
Confidence            843     2223222 23344444555432 222    5778877654

>PLN02476 O-methyltransferase

Probab=97.88  E-value=0.00013  Score=66.32  Aligned_cols=131  Identities=15%  Similarity=0.212  Sum_probs=80.7

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCcc---ccccccc-cCCCCC-----CCcc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGLI---GIYHDWC-EGFSTY-----PRTY  144 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl~---~~~~~~~-e~l~~~-----p~sF  144 (235)
                      ...++||++|+|+|..+.+|+.. +. ...|+.+|.. +.+.++.+    -|+-   ...++.+ +.|+..     +++|
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            34679999999999998888752 21 1248888887 66665433    3542   1222211 223321     3689


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh------------HHHHHHHH----HHhccCceeEeecCC
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV------------DALNKVRK----FAEGMRWDTKMMDHE  208 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~------------~~~~~i~~----~~~~~~W~~~~~~~~  208 (235)
                      |+|+...      ++.+...++....+.|||||.+++.+..            .....|++    +...=++...+... 
T Consensus       196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi-  268 (278)
T PLN02476        196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI-  268 (278)
T ss_pred             CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe-
Confidence            9998732      2234578899999999999999987410            01112333    34555677665432 


Q ss_pred             CCCCCCceEEEEEec
Q 026623          209 DGPLMPEKILIAVKQ  223 (235)
Q Consensus       209 ~~~~~~e~~l~~~k~  223 (235)
                           .+.+++++|+
T Consensus       269 -----gDGl~i~~K~  278 (278)
T PLN02476        269 -----GDGMTICRKR  278 (278)
T ss_pred             -----CCeeEEEEEC
Confidence                 3568888874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.88  E-value=6.8e-05  Score=65.87  Aligned_cols=97  Identities=13%  Similarity=0.221  Sum_probs=68.1

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccc---ccc--ccccCCC-CCCCcccee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIG---IYH--DWCEGFS-TYPRTYDLI  147 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~--~~~e~l~-~~p~sFDlV  147 (235)
                      ...++||.+|.+.|.-+..|+.. +. -..++.+|.. ++...|++-    |+-.   .+.  +..+.|. ...++||+|
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            35689999999999877777653 21 2368899998 777765542    4322   222  3334444 456999999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +...      ++.+-..++.+.-+.|||||.+++-+
T Consensus       137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         137 FIDA------DKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             EEeC------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence            8632      23345799999999999999999884

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00016  Score=64.27  Aligned_cols=134  Identities=19%  Similarity=0.288  Sum_probs=91.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCC--CCCccceeeehhhhcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFST--YPRTYDLIHANGVFSL  155 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~--~p~sFDlV~a~~vl~h  155 (235)
                      ..+.+||+|+-||||+--+.+++  +-.|.++|.. +.|.--.+...  +..-......+..  +.+..|+++|.-.|- 
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI-  155 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI-  155 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence            47899999999999999999988  4579999998 77765433322  1110000111211  124678999977773 


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE-------------------e---ChHHHHHHHHHHhccCceeE-eecCC-CCC
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR-------------------D---EVDALNKVRKFAEGMRWDTK-MMDHE-DGP  211 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------d---~~~~~~~i~~~~~~~~W~~~-~~~~~-~~~  211 (235)
                           .+..+|-.+..+|.|+|.++..                   |   ...++.++.++++...|.+. ...++ .|.
T Consensus       156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~  230 (245)
T COG1189         156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG  230 (245)
T ss_pred             -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence                 5679999999999999998876                   2   22457889999999999986 33333 444


Q ss_pred             CCCceEEEEEe
Q 026623          212 LMPEKILIAVK  222 (235)
Q Consensus       212 ~~~e~~l~~~k  222 (235)
                      .+..++|++-|
T Consensus       231 ~GNiE~l~~~~  241 (245)
T COG1189         231 KGNIEFLLLLK  241 (245)
T ss_pred             CCcEeeeeeee
Confidence            44445665543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.81  E-value=0.0004  Score=60.88  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=94.8

Q ss_pred             cchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc----ccHHH-HHHcCcc--c
Q 026623           58 EDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK----NTLGV-IYERGLI--G  128 (235)
Q Consensus        58 ~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s----~~L~~-~~~Rgl~--~  128 (235)
                      ...+.|.+++-+-....+.+... ..+++|+|.|.|  |.-.++....   .+|+-+|..    +.|.. +.+-||.  .
T Consensus        45 ~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~---~~vtLles~~Kk~~FL~~~~~eL~L~nv~  120 (215)
T COG0357          45 DPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPD---LKVTLLESLGKKIAFLREVKKELGLENVE  120 (215)
T ss_pred             CHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccC---CcEEEEccCchHHHHHHHHHHHhCCCCeE
Confidence            33678887776544434333221 479999999999  4444444433   248888875    33443 3344664  4


Q ss_pred             cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE---eChHHHHHHHHHHhccCceeEee
Q 026623          129 IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR---DEVDALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       129 ~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~---d~~~~~~~i~~~~~~~~W~~~~~  205 (235)
                      .+|...|.+.--++.||+|.|       +..+++..++.=+...||+||.++.-   -..+...++++-.....+.+..+
T Consensus       121 i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~  193 (215)
T COG0357         121 IVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV  193 (215)
T ss_pred             EehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence            567777877622222999987       33346677777788999999987533   34556777788888888887755


Q ss_pred             cCCCCCC-CCceEEEE
Q 026623          206 DHEDGPL-MPEKILIA  220 (235)
Q Consensus       206 ~~~~~~~-~~e~~l~~  220 (235)
                      ..-.-|. ..++.|+.
T Consensus       194 ~~~~~p~~~~~r~l~i  209 (215)
T COG0357         194 FSLTVPELDGERHLVI  209 (215)
T ss_pred             EEeecCCCCCceEEEE
Confidence            5443333 23455443

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.79  E-value=6.2e-05  Score=67.26  Aligned_cols=102  Identities=7%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------c--c----c------------------
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------L--I----G------------------  128 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------l--~----~------------------  128 (235)
                      ....+||+||..|.+++.+++... ...|.++|+- ..++.|...-       .  .    .                  
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            456799999999999999988632 3458899996 4444443320       0  0    0                  


Q ss_pred             ---------------cccccccCCCCCCCccceeeehhhhc--cCCC-CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          129 ---------------IYHDWCEGFSTYPRTYDLIHANGVFS--LYEN-TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       129 ---------------~~~~~~e~l~~~p~sFDlV~a~~vl~--h~~~-~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                                     .+....+-|-.-.+.||+|.|-.+=.  |+.+ ...+..+++.+.|.|.|||+||+--
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                           00000000111127899999844432  6632 2238899999999999999999984

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.79  E-value=4.2e-05  Score=68.00  Aligned_cols=69  Identities=10%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceeeehhhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .+..+|||+|||+|.++..|.+++   ..|+++|.+ .+++.+.++-    -+..++.....+++  ..||.|++|.=+
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~--~~~d~Vv~NlPy  101 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL--PEFNKVVSNLPY  101 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc--hhceEEEEcCCc
Confidence            346799999999999999999874   369999999 8888776642    13334443444442  358999886554

>PLN02823 spermine synthase

Probab=97.77  E-value=0.00043  Score=64.38  Aligned_cols=100  Identities=16%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-cc---------cccccccc-CCCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-LI---------GIYHDWCE-GFSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l~---------~~~~~~~e-~l~~~p~sFDlV~  148 (235)
                      ..++||-+|+|.|+.+.++.+.+. +..|+.+|+. +.++++.+.- +.         ..+.+++- -+...+++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            467999999999999998887532 3578888888 7777766531 11         11111111 1222347999999


Q ss_pred             ehhhhccCC-CCCC---hHHHHH-HHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYE-NTCK---PEDILL-EMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~-~~~~---~~~~L~-Em~RVLRPGG~lii~  182 (235)
                      +.. ..... ..+.   -..++. .+.|.|+|||.+++.
T Consensus       182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            863 21110 0000   136777 899999999999876

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.77  E-value=4.8e-05  Score=66.70  Aligned_cols=125  Identities=14%  Similarity=0.231  Sum_probs=82.6

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcccccccccc-CCCCCC-CccceeeehhhhccCCCCC
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCE-GFSTYP-RTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e-~l~~~p-~sFDlV~a~~vl~h~~~~~  160 (235)
                      -++||+||=....+  ....+ | .+|+++|+...-+-+.+       .|..+ ++|.-+ +.||+|.++.||.++|+..
T Consensus        53 lrlLEVGals~~N~--~s~~~-~-fdvt~IDLns~~~~I~q-------qDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~  121 (219)
T PF11968_consen   53 LRLLEVGALSTDNA--CSTSG-W-FDVTRIDLNSQHPGILQ-------QDFMERPLPKNESEKFDVISLSLVLNFVPDPK  121 (219)
T ss_pred             ceEEeecccCCCCc--ccccC-c-eeeEEeecCCCCCCcee-------eccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence            58999998754432  22222 3 46999999742222211       22223 356555 8999999999999998655


Q ss_pred             ChHHHHHHHhhhhcCCcE-----EEEEe------ChHH--HHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          161 KPEDILLEMDRILRPEGA-----VIFRD------EVDA--LNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~-----lii~d------~~~~--~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      .--+.|+-+.+.|||+|.     ++|.-      +..+  .+.+..+..++......+..-    .+=.+..++|
T Consensus       122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~----~Kl~y~l~r~  192 (219)
T PF11968_consen  122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS----KKLAYWLFRK  192 (219)
T ss_pred             HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec----CeEEEEEEee
Confidence            556899999999999999     66663      2222  457888999999987755322    2334455555

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.73  E-value=9.3e-05  Score=64.18  Aligned_cols=130  Identities=16%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCcc---cccccc-ccCCCC----C-CCccc
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGLI---GIYHDW-CEGFST----Y-PRTYD  145 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl~---~~~~~~-~e~l~~----~-p~sFD  145 (235)
                      +.++||.+||++|.-+..|+.. + ....|+.+|.. +..++|.+    -|+-   ...+.. .+.|+.    . +++||
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~-~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALP-EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTST-TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             CCceEEEeccccccHHHHHHHhhc-ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            4679999999999988888753 2 12468888887 66665433    3542   222221 122221    2 36899


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------------H--HHHH-HHHHHhccCceeEeecCCC
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------------D--ALNK-VRKFAEGMRWDTKMMDHED  209 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------------~--~~~~-i~~~~~~~~W~~~~~~~~~  209 (235)
                      +|+...-=      .+....+..+.+.|||||.+++.+..             .  .+.+ .+.+...=+.++.+..   
T Consensus       124 ~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp---  194 (205)
T PF01596_consen  124 FVFIDADK------RNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP---  194 (205)
T ss_dssp             EEEEESTG------GGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC---
T ss_pred             EEEEcccc------cchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE---
Confidence            99974432      24568888899999999999999511             1  1222 2233444566665432   


Q ss_pred             CCCCCceEEEEEec
Q 026623          210 GPLMPEKILIAVKQ  223 (235)
Q Consensus       210 ~~~~~e~~l~~~k~  223 (235)
                         -.+.+++++|+
T Consensus       195 ---igdGl~l~~K~  205 (205)
T PF01596_consen  195 ---IGDGLTLARKR  205 (205)
T ss_dssp             ---STTEEEEEEE-
T ss_pred             ---eCCeeEEEEEC
Confidence               24678888885

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.73  E-value=0.00021  Score=63.09  Aligned_cols=71  Identities=10%  Similarity=0.086  Sum_probs=47.9

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccc---eee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYD---LIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFD---lV~  148 (235)
                      ++..+..+|||+|||+|.++..|.++..   .|+++|.+ ++++.+.++-    -+..++..+..+++  ..||   +|+
T Consensus        25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--~~~d~~~~vv   99 (253)
T TIGR00755        25 ANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--PDFPKQLKVV   99 (253)
T ss_pred             cCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh--hHcCCcceEE
Confidence            4444567999999999999999998753   48999998 7877765542    12334444444442  2566   666


Q ss_pred             ehhh
Q 026623          149 ANGV  152 (235)
Q Consensus       149 a~~v  152 (235)
                      ++.-
T Consensus       100 sNlP  103 (253)
T TIGR00755       100 SNLP  103 (253)
T ss_pred             EcCC
Confidence            6443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.72  E-value=0.00013  Score=70.72  Aligned_cols=106  Identities=18%  Similarity=0.263  Sum_probs=66.0

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---c-Cccc--cccccccCCC-CCCCccceee-
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---R-GLIG--IYHDWCEGFS-TYPRTYDLIH-  148 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---R-gl~~--~~~~~~e~l~-~~p~sFDlV~-  148 (235)
                      ...+..+|||++||.|+=+.+|++.-.-...|++.|.+ ..+....+   | |+..  +.+.....++ .++..||.|. 
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            44567899999999998766665531001258999998 66665433   2 5522  2222223332 4568899999 


Q ss_pred             ---eh--hhhccCCC----C--CCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ---AN--GVFSLYEN----T--CKP-------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 ---a~--~vl~h~~~----~--~~~-------~~~L~Em~RVLRPGG~lii~d  183 (235)
                         ||  .+|..-++    +  .++       .++|....+.|||||++|-++
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence               44  22322110    0  001       378889999999999999996

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=1.2e-05  Score=67.42  Aligned_cols=45  Identities=24%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             CCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          137 FSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       137 l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .+|.|+|.|+|.|.+|++|+.- .+-..+++|.+|+|||||++-|.
T Consensus        41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence            5666799999999999999853 35679999999999999999998

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.67  E-value=0.0001  Score=69.94  Aligned_cols=124  Identities=18%  Similarity=0.208  Sum_probs=77.8

Q ss_pred             ccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccccc
Q 026623           57 QEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYH  131 (235)
Q Consensus        57 ~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~  131 (235)
                      ..++-.|-.+-..-..+-..++   +++|||+=|=||+|+.+-+..|  +..|+.+|.| ..|+.+.+.    |+...-|
T Consensus       196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~  270 (393)
T COG1092         196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRH  270 (393)
T ss_pred             cccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence            4445555544444333222232   6799999999999998888766  3479999999 888877664    4433223


Q ss_pred             cccc--CCCC---CC---Cccceeeeh-hhhccCC-----CCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          132 DWCE--GFST---YP---RTYDLIHAN-GVFSLYE-----NTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       132 ~~~e--~l~~---~p---~sFDlV~a~-~vl~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      .|-.  .|.+   +.   .+||+|+.. =.|..-+     -..+..+++.+..++|+|||.++++.+.
T Consensus       271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            3322  1222   22   499999971 1111000     0013358899999999999999999754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.61  E-value=0.00051  Score=61.88  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH--cCccccccc-cccCCC--CCC-Cccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE--RGLIGIYHD-WCEGFS--TYP-RTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~--Rgl~~~~~~-~~e~l~--~~p-~sFDlV~a~~  151 (235)
                      -..++|||+|||+|.-+.+..+. + -...++.+|.| .|++++..  +........ |-..+-  ..+ ...|||++++
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~  110 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASY  110 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEeh
Confidence            34679999999999866555542 2 23578899999 88875332  111111110 101111  111 3349999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~  204 (235)
                      +|..+++ .....++..+.+-+.+  .+||-|.-     ..+.++...+....+.+..
T Consensus       111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A  165 (274)
T PF09243_consen  111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA  165 (274)
T ss_pred             hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence            9999976 6677888888777766  88888732     2466677777655555553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.60  E-value=9.1e-05  Score=62.60  Aligned_cols=123  Identities=16%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             hCCCCCceEeeeccccchHHHH--HhcCCCc------eeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAA--LESPKSW------VMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTY  140 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~--L~~~~~~------~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~  140 (235)
                      .++.....|||-=||+|++...  +.....-      ...+.+.|.. +++..+.+.    |+   +......+..+++.
T Consensus        24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~  103 (179)
T PF01170_consen   24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP  103 (179)
T ss_dssp             TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred             hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence            3455567899999999998632  2222211      1237799998 887765442    33   22333345567756


Q ss_pred             CCccceeeehhhhcc-CCCCC----ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          141 PRTYDLIHANGVFSL-YENTC----KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       141 p~sFDlV~a~~vl~h-~~~~~----~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      ++++|+|+++-=+-. +....    -...++.|+.|+|+|...+++.....+    ++.+....|+..
T Consensus       104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~  167 (179)
T PF01170_consen  104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR  167 (179)
T ss_dssp             TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred             cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence            699999999543321 00000    123789999999999666666665543    344444466654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.57  E-value=0.00021  Score=63.84  Aligned_cols=117  Identities=18%  Similarity=0.299  Sum_probs=72.4

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccc---c-cccccc-CCCC-CCCc
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIG---I-YHDWCE-GFST-YPRT  143 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~-~~~~~e-~l~~-~p~s  143 (235)
                      .++-.++.+||+.|.|+|.++.+|+.. +. ...|...|.. +....|.+.    |+..   . ..|.|+ .|+- .++.
T Consensus        35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p-~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~  113 (247)
T PF08704_consen   35 RLDIRPGSRVLEAGTGSGSLTHALARAVGP-TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD  113 (247)
T ss_dssp             HTT--TT-EEEEE--TTSHHHHHHHHHHTT-TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred             HcCCCCCCEEEEecCCcHHHHHHHHHHhCC-CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence            355566889999999999999999852 11 2368888887 666655442    5532   2 245553 3421 2378


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhh-cCCcEEEEEe-ChHHHHHHHHHHhccCce
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRIL-RPEGAVIFRD-EVDALNKVRKFAEGMRWD  201 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVL-RPGG~lii~d-~~~~~~~i~~~~~~~~W~  201 (235)
                      ||.|+.        |-.++-.++.-+.++| ||||.+++-- +.+.+.+.-.-++...|.
T Consensus       114 ~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~  165 (247)
T PF08704_consen  114 FDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT  165 (247)
T ss_dssp             EEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred             ccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence            999986        4457778999999999 9999988864 444443433344445554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.49  E-value=0.0006  Score=61.72  Aligned_cols=117  Identities=15%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH---HHHHcCc----c---ccccccccC-------------
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG---VIYERGL----I---GIYHDWCEG-------------  136 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~---~~~~Rgl----~---~~~~~~~e~-------------  136 (235)
                      ..-+||==|||.|.++-.++.+|.   .+.+.+.| -||-   ++.....    .   ..+|.+|-.             
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            346899999999999999999864   58888888 6654   3333210    0   011111110             


Q ss_pred             -------------CC--------CC--C---CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--------
Q 026623          137 -------------FS--------TY--P---RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--------  182 (235)
Q Consensus       137 -------------l~--------~~--p---~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--------  182 (235)
                                   |+        .|  +   ++||+|++.+.+.-   -.++.+.|..|.++|||||+ +|.        
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~-WIN~GPLlyh~  208 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGY-WINFGPLLYHF  208 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCE-EEecCCccccC
Confidence                         10        12  2   59999998766642   23688999999999999994 444        


Q ss_pred             -eC-------hH-HHHHHHHHHhccCceeEe
Q 026623          183 -DE-------VD-ALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       183 -d~-------~~-~~~~i~~~~~~~~W~~~~  204 (235)
                       +.       .+ .+++|..+++++.|+...
T Consensus       209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~  239 (270)
T PF07942_consen  209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEK  239 (270)
T ss_pred             CCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence             22       23 278999999999999864

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00066  Score=58.56  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             cccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccc
Q 026623           54 KSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIY  130 (235)
Q Consensus        54 ~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~  130 (235)
                      |.|..+...=...+..    ....+.-..+.|+|+|||||.|+-..+-.+.  -.|+++|.- ++++++.+.-  +.+.+
T Consensus        22 EQY~Tp~~~Aa~il~~----a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v   95 (198)
T COG2263          22 EQYRTPAPLAAYILWV----AYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDV   95 (198)
T ss_pred             eecCCChHHHHHHHHH----HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCce
Confidence            4566666642222221    1113444567899999999987655555442  358899887 7777654431  33333


Q ss_pred             cccccCCCCCCCccceeeehhhhc
Q 026623          131 HDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus       131 ~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      --.+.+...+..-||.|+.|==|-
T Consensus        96 ~f~~~dv~~~~~~~dtvimNPPFG  119 (198)
T COG2263          96 EFVVADVSDFRGKFDTVIMNPPFG  119 (198)
T ss_pred             EEEEcchhhcCCccceEEECCCCc
Confidence            222344666778999988865554

>PRK00536 speE spermidine synthase; Provisional

Probab=97.46  E-value=0.00087  Score=60.39  Aligned_cols=94  Identities=15%  Similarity=0.026  Sum_probs=64.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cccc---cccccccCCCCCCCccce
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GLIG---IYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl~~---~~~~~~e~l~~~p~sFDl  146 (235)
                      +...+.++||=+|-|-|+.++.+.+.+.   .|+-+|+- ..++.+++-      ++-.   .++.+..  ....++||+
T Consensus        68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~--~~~~~~fDV  142 (262)
T PRK00536         68 CTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDIKKYDL  142 (262)
T ss_pred             hhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--hccCCcCCE
Confidence            3445679999999999999999999862   67777776 566554431      1100   0011111  112378999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+....+        -..+...++|.|+|||.++..-
T Consensus       143 IIvDs~~--------~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        143 IICLQEP--------DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             EEEcCCC--------ChHHHHHHHHhcCCCcEEEECC
Confidence            9986543        2577789999999999999975

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.44  E-value=0.00071  Score=62.55  Aligned_cols=125  Identities=13%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             cccccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccchH----HHHHhcCCCceeEEeecCcc-ccHHHHHHcC
Q 026623           52 TGKSYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGGF----AAALESPKSWVMNVVPTTAK-NTLGVIYERG  125 (235)
Q Consensus        52 ~~~~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~f----aa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg  125 (235)
                      .+|-|...++.  .....+.. +...++.  ...++|+|||.|.=    ..+|...+. ....+|+|+| +.|+.+.++-
T Consensus        50 lpEYYptr~E~--~iL~~~~~~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L  124 (319)
T TIGR03439        50 SPEYYLTNDEI--EILKKHSSDIAASIPS--GSMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAEL  124 (319)
T ss_pred             CCccCChHHHH--HHHHHHHHHHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhh
Confidence            46677776663  44444333 3334554  34799999999964    445543221 2368999999 8998655531


Q ss_pred             ------------ccccccccccCCCC--CCCccceeee-hhhhccCCCCCChHHHHHHHhh-hhcCCcEEEEE
Q 026623          126 ------------LIGIYHDWCEGFST--YPRTYDLIHA-NGVFSLYENTCKPEDILLEMDR-ILRPEGAVIFR  182 (235)
Q Consensus       126 ------------l~~~~~~~~e~l~~--~p~sFDlV~a-~~vl~h~~~~~~~~~~L~Em~R-VLRPGG~lii~  182 (235)
                                  +.+++.+-.+-++.  .+....++.. ...|.++. +.+...+|.++.+ .|+|||.|+|.
T Consensus       125 ~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       125 PLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             hhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEe
Confidence                        12222111111221  1234555544 45666663 3455699999999 99999999997

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.40  E-value=0.0027  Score=59.43  Aligned_cols=90  Identities=20%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCC--CCccceeeehhhhccCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTY--PRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~--p~sFDlV~a~~vl~h~~~  158 (235)
                      ++.++||+||++|||+..|.+++   +.|+++|...+-+...+-+.+..+..  ..+-+.  ++.+|+|+|..+-     
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmve-----  280 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMVE-----  280 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEeccc-----
Confidence            56799999999999999999987   37999997655554444444333211  122222  5889999996553     


Q ss_pred             CCChHHHHHHHhhhhcCC--cEEEEE
Q 026623          159 TCKPEDILLEMDRILRPE--GAVIFR  182 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPG--G~lii~  182 (235)
                        .+..++.=|.+-|..|  ..+|++
T Consensus       281 --~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        281 --KPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             --CHHHHHHHHHHHHhcCcccEEEEE
Confidence              5678888888888776  456776

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.33  E-value=0.0007  Score=57.74  Aligned_cols=98  Identities=11%  Similarity=0.048  Sum_probs=58.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCCCC--C-Cccceeee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFSTY--P-RTYDLIHA  149 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~~~--p-~sFDlV~a  149 (235)
                      ..+|||++||+|.++.++..++.  ..|+.+|.+ ..++.+.+.    ++.   ..+...+ +.+...  . ..||+|+.
T Consensus        50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            46899999999999999998874  369999998 666654432    321   1222222 112211  2 24788876


Q ss_pred             hhhhccCCCCCChHHHHHHH--hhhhcCCcEEEEEeCh
Q 026623          150 NGVFSLYENTCKPEDILLEM--DRILRPEGAVIFRDEV  185 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em--~RVLRPGG~lii~d~~  185 (235)
                      .==+..    .....++.-+  ..+|+++|.+|+....
T Consensus       128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            333321    1233443333  4578999988876543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.32  E-value=0.00085  Score=62.52  Aligned_cols=124  Identities=12%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CCC------C---------
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FST------Y---------  140 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~~------~---------  140 (235)
                      +|||++||+|.|+.+|++..   ..|+++|.+ +++..+.+.    |+  +..+....+. ++.      +         
T Consensus       200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            59999999999999998763   369999999 888876653    32  1122211111 110      0         


Q ss_pred             CCccceeeehhhhccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEe---ecCCCCCCCCc
Q 026623          141 PRTYDLIHANGVFSLYENTCKP-EDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKM---MDHEDGPLMPE  215 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~---~~~~~~~~~~e  215 (235)
                      ...||+|+..      |.+..+ ..++.   .+++|++.++++=++.. ..-++.+.++  |++..   .|-=....+-|
T Consensus       277 ~~~~d~v~lD------PPR~G~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~~DmFP~T~HvE  345 (353)
T TIGR02143       277 SYNCSTIFVD------PPRAGLDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVERFALFDQFPYTHHME  345 (353)
T ss_pred             cCCCCEEEEC------CCCCCCcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEEcccCCCCCcEE
Confidence            0137888761      122222 23333   34569999999976654 4455655544  77652   22222333556


Q ss_pred             eEEEEE
Q 026623          216 KILIAV  221 (235)
Q Consensus       216 ~~l~~~  221 (235)
                      .+..-.
T Consensus       346 ~v~lL~  351 (353)
T TIGR02143       346 CGVLLE  351 (353)
T ss_pred             EEEEEE
Confidence            555443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.31  E-value=0.00071  Score=62.99  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      .+...+|+|.|.|..+..+..+..+ +..+..|.+..++.+..-+ .|+-|--++.|-.- -.=|+|++-.++||+.| .
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~-P~~daI~mkWiLhdwtD-e  252 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDT-PKGDAIWMKWILHDWTD-E  252 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccC-CCcCeEEEEeecccCCh-H
Confidence            3678999999999999998875333 4556666654444333322 33333333333221 23459999999999965 6


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          161 KPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +..++|+-++--|+|||.+|+-|+
T Consensus       253 dcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  253 DCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEec
Confidence            889999999999999999999985

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.30  E-value=9.1e-05  Score=65.08  Aligned_cols=91  Identities=20%  Similarity=0.324  Sum_probs=65.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc-ccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI-GIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ...++||+|+|.|..+..++..   .-.|.+...| .|......++.. -...+|.+    -+=.||+|.|-.+|    +
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~~ew~~----t~~k~dli~clNlL----D  180 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQ----TDVKLDLILCLNLL----D  180 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeeehhhhh----cCceeehHHHHHHH----H
Confidence            3468999999999998888753   2346777778 555555555542 22334433    23459999998888    5


Q ss_pred             CCC-hHHHHHHHhhhhcC-CcEEEEE
Q 026623          159 TCK-PEDILLEMDRILRP-EGAVIFR  182 (235)
Q Consensus       159 ~~~-~~~~L~Em~RVLRP-GG~lii~  182 (235)
                      +|. +-.+|.+++-||+| .|.+|+.
T Consensus       181 Rc~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  181 RCFDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             hhcChHHHHHHHHHHhccCCCcEEEE
Confidence            554 67999999999999 9999887

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00049  Score=60.36  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHH----------------HHHcCccccccccccCCCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGV----------------IYERGLIGIYHDWCEGFSTYPR  142 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~----------------~~~Rgl~~~~~~~~e~l~~~p~  142 (235)
                      ++.+.||+|.|+|.+++.+... +.-..++++++.- +.+..                -+++|-+..+...|........
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a  161 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA  161 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence            3678999999999877665521 1112345777764 33332                1234434444444543332338


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      .||.||+-..-         ..+.+|+--.|+|||.++|--.
T Consensus       162 ~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  162 PYDAIHVGAAA---------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CcceEEEccCc---------cccHHHHHHhhccCCeEEEeec
Confidence            99999985333         3566788889999999998754

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.28  E-value=0.0017  Score=60.54  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc--ccc-cccCCCCCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI--YHD-WCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~--~~~-~~e~l~~~p~sFDlV~a~~  151 (235)
                      .++.+|||==||||+|+....-.|   .+++|.|+. .|+.-+...    |+-..  +.. .+..+|+-.++||.|.|.-
T Consensus       196 ~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            346689999999999976655443   589999999 887754322    21111  111 3456784447899999832


Q ss_pred             hh--c-cCCCCCC----hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          152 VF--S-LYENTCK----PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       152 vl--~-h~~~~~~----~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      =-  + -. ....    ..++|.++.++||+||++++--+...+..    +..+.+++.
T Consensus       273 PYGrst~~-~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~----~~~~~f~v~  326 (347)
T COG1041         273 PYGRSTKI-KGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE----LEELGFKVL  326 (347)
T ss_pred             CCCccccc-ccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh----HhhcCceEE
Confidence            11  1 11 1112    46899999999999999999866443333    344555554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.24  E-value=0.00091  Score=56.93  Aligned_cols=110  Identities=13%  Similarity=0.078  Sum_probs=76.0

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCC----CCCC-Cccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGF----STYP-RTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l----~~~p-~sFD  145 (235)
                      +...|++..+..||.+|.|||-|+.++.++++--.+++.++.+ +......++-- ...+...+..+    .-+. .-||
T Consensus        40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D  119 (194)
T COG3963          40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFD  119 (194)
T ss_pred             HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeee
Confidence            4445777778899999999999999999998766788999888 65554433311 11122222222    2233 8999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .|+|..=|-.++-. --.++|.+..--|++||-++--.
T Consensus       120 ~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         120 SVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             eEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEEE
Confidence            99986655444311 22588999999999999998765

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.22  E-value=0.00051  Score=62.65  Aligned_cols=71  Identities=14%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      ......+|||+|||+|.++..|.+..   ..|+++|.+ ++++.+.++    ++   +..++.++..++  ...||+|++
T Consensus        33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--~~~~d~Vva  107 (294)
T PTZ00338         33 AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--FPYFDVCVA  107 (294)
T ss_pred             CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--ccccCEEEe
Confidence            33346789999999999999998864   358999999 888876553    21   233443332222  257899987


Q ss_pred             hhhh
Q 026623          150 NGVF  153 (235)
Q Consensus       150 ~~vl  153 (235)
                      |.=.
T Consensus       108 NlPY  111 (294)
T PTZ00338        108 NVPY  111 (294)
T ss_pred             cCCc
Confidence            5444

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.20  E-value=0.00045  Score=65.19  Aligned_cols=92  Identities=16%  Similarity=0.248  Sum_probs=61.3

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCCCCCCccceeeehhhhcc
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      .+|||++||+|.++..++.... +..|+++|.+ +.++.+.+.    |+..  .++..++.+-...+.||+|..+= +  
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--  134 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--  134 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence            4799999999999998865321 3469999998 777765432    3321  23333332211146799998732 1  


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                          -....+|....+.++|||+++++
T Consensus       135 ----Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 ----GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence                12357777767889999999999

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.18  E-value=0.0023  Score=59.81  Aligned_cols=125  Identities=13%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CCCC--------------
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FSTY--------------  140 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~~~--------------  140 (235)
                      .+|||++||+|.|+.+|+...   ..|+++|.+ .+++.+.+.    |+  +..+....+. ++..              
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~  284 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL  284 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence            469999999999999998753   369999999 888876653    33  1122222221 1100              


Q ss_pred             -CCccceeeehhhhccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHHH-HHHHHHHhccCceeEee---cCCCCCCCC
Q 026623          141 -PRTYDLIHANGVFSLYENTCKP-EDILLEMDRILRPEGAVIFRDEVDAL-NKVRKFAEGMRWDTKMM---DHEDGPLMP  214 (235)
Q Consensus       141 -p~sFDlV~a~~vl~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~~-~~i~~~~~~~~W~~~~~---~~~~~~~~~  214 (235)
                       ...||+|+..      |.+..+ +.++.   .+++|++.++++=++..+ .-++.+.+  .|++...   |-=....+-
T Consensus       285 ~~~~~D~v~lD------PPR~G~~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~~DmFPqT~Hv  353 (362)
T PRK05031        285 KSYNFSTIFVD------PPRAGLDDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVERFALFDQFPYTHHM  353 (362)
T ss_pred             cCCCCCEEEEC------CCCCCCcHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEEcccCCCCCcE
Confidence             1258999861      112221 23333   344589999999776543 34665553  5776522   222233355


Q ss_pred             ceEEEEE
Q 026623          215 EKILIAV  221 (235)
Q Consensus       215 e~~l~~~  221 (235)
                      |.+..-.
T Consensus       354 E~v~lL~  360 (362)
T PRK05031        354 ECGVLLE  360 (362)
T ss_pred             EEEEEEE
Confidence            6655543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.16  E-value=0.00036  Score=63.84  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCC-C---Cc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTY-P---RT  143 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~-p---~s  143 (235)
                      ++..+...+...++|.+||+|+.+.++++...-...|+++|.. +++..+.++-    -+..+|+....+..+ +   .+
T Consensus        11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~   90 (296)
T PRK00050         11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGK   90 (296)
T ss_pred             HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCc
Confidence            3444444445689999999999999998763112479999999 9999887651    133445444433321 1   27


Q ss_pred             cceeeehhhhc
Q 026623          144 YDLIHANGVFS  154 (235)
Q Consensus       144 FDlV~a~~vl~  154 (235)
                      ||.|++....+
T Consensus        91 vDgIl~DLGvS  101 (296)
T PRK00050         91 VDGILLDLGVS  101 (296)
T ss_pred             cCEEEECCCcc
Confidence            99998866554

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0085  Score=54.54  Aligned_cols=140  Identities=9%  Similarity=0.049  Sum_probs=80.8

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccccc--C-----------CCCCCCc
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE--G-----------FSTYPRT  143 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e--~-----------l~~~p~s  143 (235)
                      .....++||=+|-|.|+.++++.+.+. +..++-+|+- ..+..+++.  .+..+..+.  +           +...+++
T Consensus        73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~--l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~  149 (282)
T COG0421          73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKY--LPEPSGGADDPRVEIIIDDGVEFLRDCEEK  149 (282)
T ss_pred             hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHh--ccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence            334458999999999999999998753 4567777776 555554432  111111111  0           1224469


Q ss_pred             cceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEeecCC--CCCCCC
Q 026623          144 YDLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKMMDHE--DGPLMP  214 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~~~~~--~~~~~~  214 (235)
                      ||+|++...=. .-.-..  -..+++.++|.|+|+|.++.....     +.+..+.+..+++.+.+..+...  .-+.+-
T Consensus       150 fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~  228 (282)
T COG0421         150 FDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGF  228 (282)
T ss_pred             CCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCc
Confidence            99999733221 000000  168999999999999999999322     22345555566664443322221  111123


Q ss_pred             ceEEEEE
Q 026623          215 EKILIAV  221 (235)
Q Consensus       215 e~~l~~~  221 (235)
                      ..+.++.
T Consensus       229 ~~f~~~s  235 (282)
T COG0421         229 WGFIVAS  235 (282)
T ss_pred             eEEEEee
Confidence            4566665

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.14  E-value=0.0017  Score=60.04  Aligned_cols=73  Identities=18%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----c-Cccccc---c-cc----ccCCCCCCCcc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----R-GLIGIY---H-DW----CEGFSTYPRTY  144 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----R-gl~~~~---~-~~----~e~l~~~p~sF  144 (235)
                      +...+|||+|||+|.++..|..+ +.|  .++++|++ ..+..+.+    - ++...+   + ..    .+.+....+.|
T Consensus       113 ~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        113 GANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence            34578999999999888777653 334  69999998 77775443    2 332211   1 01    11111113689


Q ss_pred             ceeeehhhhc
Q 026623          145 DLIHANGVFS  154 (235)
Q Consensus       145 DlV~a~~vl~  154 (235)
                      |+|+||==|+
T Consensus       191 DlivcNPPf~  200 (321)
T PRK11727        191 DATLCNPPFH  200 (321)
T ss_pred             EEEEeCCCCc
Confidence            9999975554

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.09  E-value=0.00054  Score=61.55  Aligned_cols=103  Identities=16%  Similarity=0.288  Sum_probs=60.3

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH-------------------HHH-cC-----------
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV-------------------IYE-RG-----------  125 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~-------------------~~~-Rg-----------  125 (235)
                      +...+.++||+|||+--+ ..|... .|..+|+..|.+ ..++.                   +.+ .|           
T Consensus        53 g~~~g~~llDiGsGPtiy-~~lsa~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~  130 (256)
T PF01234_consen   53 GGVKGETLLDIGSGPTIY-QLLSAC-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK  130 (256)
T ss_dssp             SSS-EEEEEEES-TT--G-GGTTGG-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHH-hhhhHH-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence            334568999999999543 333332 256789888886 33331                   111 11           


Q ss_pred             ---ccc-cc-cccccCCCC-----CCCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          126 ---LIG-IY-HDWCEGFST-----YPRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       126 ---l~~-~~-~~~~e~l~~-----~p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                         .+. ++ .|..+.-|.     .|..||+|++...++-. ++......+|+-+-+.|||||.||+.
T Consensus       131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~  198 (256)
T PF01234_consen  131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA  198 (256)
T ss_dssp             HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence               111 11 111122222     23569999999888754 23334569999999999999999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.95  E-value=0.0064  Score=54.84  Aligned_cols=147  Identities=18%  Similarity=0.221  Sum_probs=74.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC------CCceeEEeecCcc-ccHHHHHH----cCcccc-c-cccccCCCC--C-
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP------KSWVMNVVPTTAK-NTLGVIYE----RGLIGI-Y-HDWCEGFST--Y-  140 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~------~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~-~-~~~~e~l~~--~-  140 (235)
                      +......+|||-.||+|+|..+..++      .....++.|+|.. .+..++.-    +|.... . ....+.|..  . 
T Consensus        42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~  121 (311)
T PF02384_consen   42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI  121 (311)
T ss_dssp             HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred             hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence            34455678999999999998777641      0013578999998 66655433    232111 0 011122321  1 


Q ss_pred             -CCccceeeehhhhccC-------CCC----------CCh-HHHHHHHhhhhcCCcEEEEEeChHH------HHHHHHHH
Q 026623          141 -PRTYDLIHANGVFSLY-------ENT----------CKP-EDILLEMDRILRPEGAVIFRDEVDA------LNKVRKFA  195 (235)
Q Consensus       141 -p~sFDlV~a~~vl~h~-------~~~----------~~~-~~~L~Em~RVLRPGG~lii~d~~~~------~~~i~~~~  195 (235)
                       .+.||+|+++-=|...       ...          ... ..++.-+.+.|++||.+++--+...      -.++++.+
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l  201 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL  201 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence             3689999986544321       000          011 1577889999999999766644332      23455443


Q ss_pred             hccCceeEeecCCC----CCCCCceEEEEEec
Q 026623          196 EGMRWDTKMMDHED----GPLMPEKILIAVKQ  223 (235)
Q Consensus       196 ~~~~W~~~~~~~~~----~~~~~e~~l~~~k~  223 (235)
                      -.-+.-..+...+.    +...+--+|+.+|.
T Consensus       202 l~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~  233 (311)
T PF02384_consen  202 LENGYIEAVISLPSNLFKPTGVPTSILILNKK  233 (311)
T ss_dssp             HHHEEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred             HhhchhhEEeecccceecccCcCceEEEEeec
Confidence            33333322222222    12244567777765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.93  E-value=0.0037  Score=57.05  Aligned_cols=118  Identities=21%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc
Q 026623           55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI  129 (235)
Q Consensus        55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~  129 (235)
                      .|-.|.+.-|..+..+.         ..++|||+=|=||+|+.+-+..|  +..|+.+|.| ..|+.+.+.    |+...
T Consensus       106 GlFlDqR~nR~~v~~~~---------~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~  174 (286)
T PF10672_consen  106 GLFLDQRENRKWVRKYA---------KGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLD  174 (286)
T ss_dssp             SS-GGGHHHHHHHHHHC---------TTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred             eEcHHHHhhHHHHHHHc---------CCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence            45556665454444431         25799999999999998776665  4579999999 888876554    43211


Q ss_pred             ccc-ccc-CCCC-----CCCccceeeehh-hhccCCCC----CChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          130 YHD-WCE-GFST-----YPRTYDLIHANG-VFSLYENT----CKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       130 ~~~-~~e-~l~~-----~p~sFDlV~a~~-vl~h~~~~----~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      -|. .++ .|.+     -.+.||+|++.= .|.  +..    .+..+++...-++|+|||.++++.+.
T Consensus       175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            111 111 1111     137999999710 111  011    13457888899999999999988643

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.92  E-value=0.0014  Score=56.75  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=54.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCc---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...||||-||.|.|+..++.... ...|.++|.. .......    .-++   +..++.+|..+.. ...||-|+++.  
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--  177 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--  177 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----
T ss_pred             ceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--
Confidence            57999999999999988887211 2358888887 5444322    2233   3344666666653 79999888732  


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVI  180 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~li  180 (235)
                         |.  .-..+|.+..+.+|+||.+-
T Consensus       178 ---p~--~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  178 ---PE--SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ---TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred             ---hH--HHHHHHHHHHHHhcCCcEEE
Confidence               22  22478899999999999864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.86  E-value=0.0016  Score=58.07  Aligned_cols=97  Identities=10%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHH----HcCcc---cccccc-ccCCCC------CCCc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIY----ERGLI---GIYHDW-CEGFST------YPRT  143 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~----~Rgl~---~~~~~~-~e~l~~------~p~s  143 (235)
                      ...++||.+|+++|.-+.+|+.. +. ...|+.+|.. +...+|.    +-|+.   ...++. .+.|+.      +.++
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            34679999999999877777642 21 2358888887 5555432    23542   222221 122332      2479


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ||+|+...-      +......+..+.+.|||||.+++-+
T Consensus       157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            999997432      2234577788889999999988763

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.81  E-value=0.039  Score=47.67  Aligned_cols=128  Identities=14%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHc-Cccc-cccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYER-GLIG-IYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~R-gl~~-~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      |.......+|++|||+|-...+|++.-.-..-....|++ ..+..    |... ..+. +..|....+-  +++.|+++-
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvf  116 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVF  116 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEE
Confidence            333346689999999999888888752212345678886 55553    2222 2222 2222222222  377777654


Q ss_pred             hhhhccCC------------------CCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCceeEeec
Q 026623          150 NGVFSLYE------------------NTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       150 ~~vl~h~~------------------~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~~~~  206 (235)
                      +-=+---+                  -+.-+.++|..+.-+|-|-|.|++.-... ...+|-++.++-.|.+++.-
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~  192 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM  192 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence            32111000                  11114578888889999999999985432 34456667788888877543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.002  Score=56.20  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=69.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcccccc------ccccCCCCCCCccceeeehhhh--
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYH------DWCEGFSTYPRTYDLIHANGVF--  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~------~~~e~l~~~p~sFDlV~a~~vl--  153 (235)
                      ...|+|+||-.|+.+..++++-.-...|+++|+-.|-.+.-=.-+.+.++      ..-+.++  ...+|+|.+...=  
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~--~~~~DvV~sD~ap~~  123 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALG--GAPVDVVLSDMAPNT  123 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcC--CCCcceEEecCCCCc
Confidence            57899999999999887776421112366777643222110000011111      0111122  1347998864332  


Q ss_pred             ------ccCCCCCChHHHHHHHh-hhhcCCcEEEEEeChH-HHHHHHHHHhccCceeEeecCCC-CCCCCceEEEEEe
Q 026623          154 ------SLYENTCKPEDILLEMD-RILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTKMMDHED-GPLMPEKILIAVK  222 (235)
Q Consensus       154 ------~h~~~~~~~~~~L~Em~-RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~~~~~~~-~~~~~e~~l~~~k  222 (235)
                            .|... ..+..+..||. ++|+|||.|++-+-.. ..+.+-+..+.+-..+.+..... -+...|-+++|.+
T Consensus       124 ~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~  200 (205)
T COG0293         124 SGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG  200 (205)
T ss_pred             CCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence                  23321 12334555554 5999999999986321 12222333333444444433221 1124688888864

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.72  E-value=0.022  Score=50.54  Aligned_cols=143  Identities=15%  Similarity=0.097  Sum_probs=82.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCCCC-cccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTYPR-TYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~p~-sFDlV  147 (235)
                      +.++||=+|-|.|+.+..+.+.+. +..|+.+|+. ..++++.+-      ++    ...+++++-. +...++ +||+|
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            578999999999999999998752 3467788887 666655432      10    1122221111 122345 99999


Q ss_pred             eehhhhccCCC-CCChHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCC--CCCCCCceEEE
Q 026623          148 HANGVFSLYEN-TCKPEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHE--DGPLMPEKILI  219 (235)
Q Consensus       148 ~a~~vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~--~~~~~~e~~l~  219 (235)
                      +....-...+. .---..+++.+.|.|+|||.+++.-     ..+....+.+.+++..-.+..+-..  .-+...=-+.+
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~  234 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFAS  234 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEE
Confidence            87332211000 0001589999999999999999974     2334556666666666666543222  11111124666


Q ss_pred             EEecc
Q 026623          220 AVKQY  224 (235)
Q Consensus       220 ~~k~~  224 (235)
                      +.|..
T Consensus       235 ~s~~~  239 (246)
T PF01564_consen  235 ASKDI  239 (246)
T ss_dssp             EESST
T ss_pred             EeCCC
Confidence            66654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.69  E-value=0.0043  Score=58.18  Aligned_cols=119  Identities=19%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc--C--c---cccccccccCCCCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER--G--L---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R--g--l---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      -..+.|||+|||.|-+...-+..|  ...|.++..|+|.+.+..-  |  +   |..+-+--|.+. .|+..|+|++.-.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEPM  252 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEPM  252 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEEeccc
Confidence            457889999999997554444434  3468899999888865431  1  1   111111114444 5689999997322


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEE--e-----ChHHHHHHHHHHhccCcee
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFR--D-----EVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d-----~~~~~~~i~~~~~~~~W~~  202 (235)
                      =..+-+ +.+...-.-.+|-|+|.|..+=+  |     -.+....++-.-|..-|--
T Consensus       253 G~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQ  308 (517)
T KOG1500|consen  253 GYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQ  308 (517)
T ss_pred             hhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhh
Confidence            211212 12223333456999999987644  2     1222334555666677753

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.67  E-value=0.023  Score=55.43  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=30.7

Q ss_pred             CceEeeeccccchHHHHHhcCC-------CceeEEeecCcc-ccHHHHHH
Q 026623           82 YRNVMDMNAGLGGFAAALESPK-------SWVMNVVPTTAK-NTLGVIYE  123 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~-------~~~~~V~~~D~s-~~L~~~~~  123 (235)
                      ..+|||.+||+|+|..++.++-       ....++.++|+. ..+..+..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            4589999999999988876521       124688999998 66665443

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK13699 putative methylase; Provisional

Probab=96.67  E-value=0.0028  Score=55.68  Aligned_cols=22  Identities=18%  Similarity=0.158  Sum_probs=18.9

Q ss_pred             hHHHHHHHhhhhcCCcEEEEEe
Q 026623          162 PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +..++.|+.|||||||.+++.-
T Consensus        51 ~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699         51 LQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEe
Confidence            3588999999999999998753

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.012  Score=54.94  Aligned_cols=107  Identities=20%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCC-CceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCC-CCC--Cccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPK-SWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFS-TYP--RTYD  145 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~-~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~-~~p--~sFD  145 (235)
                      +...++.+||||+++.||=+.+|+... .-...|+++|.+ .-+....++    |+..  ..+.....++ ..+  ..||
T Consensus       152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD  231 (355)
T COG0144         152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD  231 (355)
T ss_pred             cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence            666678999999999998666665431 001237999998 666654443    5532  2222222233 233  3599


Q ss_pred             eeee------hhhhccCC------CCCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHA------NGVFSLYE------NTCKP-------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a------~~vl~h~~------~~~~~-------~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .|..      ..++..-|      ...++       ..+|....++|||||.++-++
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            9985      34443111      11111       278899999999999999995

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.51  E-value=0.0055  Score=53.75  Aligned_cols=100  Identities=18%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----------Cc---cccccccccCCCCCCCccceee
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----------GL---IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----------gl---~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      -.+-|||||+|+|...|..... -.-+.|..+- ..-+...+|          |.   ++..+..|  +-+.|+-|---.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na--mk~lpn~f~kgq  138 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA--MKFLPNFFEKGQ  138 (249)
T ss_pred             ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc--hhhccchhhhcc
Confidence            3689999999999999988632 2245566553 222222222          11   22332222  223344444333


Q ss_pred             ehhhhccCCC---------CCCh-HHHHHHHhhhhcCCcEEEEEeCh
Q 026623          149 ANGVFSLYEN---------TCKP-EDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~vl~h~~~---------~~~~-~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      .+-.|.-+++         +.-+ ...+.|..=+||+||.++.....
T Consensus       139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            3333322221         0001 27888999999999999887543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.51  E-value=0.014  Score=56.58  Aligned_cols=99  Identities=12%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccCCCCCCCccceeeehhhhccCC
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      ++|=+|||.-.+...|.+.+  ..+|+.+|+| -.+..+..++.     ..........+.|.+.+||+|+.-..|.++-
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            89999999999999998876  4589999998 56665555542     2222333345676779999999988887763


Q ss_pred             CCCC-------hHHHHHHHhhhhcCCcEEEEEeC
Q 026623          158 NTCK-------PEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       158 ~~~~-------~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ...+       ....+.|+.|+|+|||.++.-.-
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            2111       23678999999999999776643

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.0081  Score=56.59  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCce--eEEeecCccccHHHH-H--HcCcccccccc------ccCCCCCC-Cccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWV--MNVVPTTAKNTLGVI-Y--ERGLIGIYHDW------CEGFSTYP-RTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~--~~V~~~D~s~~L~~~-~--~Rgl~~~~~~~------~e~l~~~p-~sFDlV~  148 (235)
                      .-.+|||+|.|.|.-+.++.+  +|-  -+++-+..|..|..+ .  ++.....-.+|      -+.+++.. ..|++++
T Consensus       113 apqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i  190 (484)
T COG5459         113 APQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAI  190 (484)
T ss_pred             CcchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhh
Confidence            345699999999987666654  231  133444444333321 1  11111111122      12355444 8999988


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..+=|-|-.+.-.+...+.-...+++|||.++|.+
T Consensus       191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            76666554443346678888999999999999998

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.09  E-value=0.05  Score=48.17  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=59.0

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-----ccHHHHHHcCc-cccccccccCCCC-C---CCcccee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-----NTLGVIYERGL-IGIYHDWCEGFST-Y---PRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-----~~L~~~~~Rgl-~~~~~~~~e~l~~-~---p~sFDlV  147 (235)
                      .-.++.+||-+|+.+|+....+.+--....-|.++.+|     +.+.++.+|-. +.++.|-.  .|. |   -...|+|
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr--~P~~Y~~lv~~VDvI  147 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR--HPEKYRMLVEMVDVI  147 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT--SGGGGTTTS--EEEE
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC--ChHHhhcccccccEE
Confidence            33456899999999999877776620001237777776     34456777765 33443322  231 2   2688999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ++.-.     +....+-++.-+..-||+||.++|.
T Consensus       148 ~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  148 FQDVA-----QPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence            87322     2234456677777899999999998

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.08  E-value=0.0039  Score=53.07  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cc-cccccCCCC---CCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IY-HDWCEGFST---YPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~-~~~~e~l~~---~p~sFDlV~  148 (235)
                      ...+|||+=||+|.++..-..+|  +..|+-+|.+ ..+..+.+.    ++..   .+ .|....+.-   ....||+|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence            46799999999999998777777  4579999998 666654432    3222   11 111112221   248999998


Q ss_pred             ehhhhccCCCCCC-hHHHHHHHh--hhhcCCcEEEEEeCh
Q 026623          149 ANGVFSLYENTCK-PEDILLEMD--RILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~vl~h~~~~~~-~~~~L~Em~--RVLRPGG~lii~d~~  185 (235)
                      +.==+.    ... +..+|.-+.  .+|+++|.+|+-...
T Consensus       120 lDPPY~----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  120 LDPPYA----KGLYYEELLELLAENNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             E--STT----SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred             ECCCcc----cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence            732221    112 256666665  799999999987543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.05  E-value=0.03  Score=53.13  Aligned_cols=18  Identities=22%  Similarity=0.512  Sum_probs=15.7

Q ss_pred             CC-CccceeeehhhhccCC
Q 026623          140 YP-RTYDLIHANGVFSLYE  157 (235)
Q Consensus       140 ~p-~sFDlV~a~~vl~h~~  157 (235)
                      || +|.+++|++..+|.+.
T Consensus       158 fP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             cCCCceEEEEeeccceecc
Confidence            45 9999999999999774

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.97  E-value=0.011  Score=55.92  Aligned_cols=93  Identities=14%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCC-CCCCCccceeeehhhhc
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGF-STYPRTYDLIHANGVFS  154 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l-~~~p~sFDlV~a~~vl~  154 (235)
                      -+|||+-||+|.++...+....-+..|+..|.+ +.++.+.+.    ++  +..++..+..+ ....+.||+|...- |.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence            489999999999998888751113579999998 777765442    22  12232222222 21236799998744 31


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                            ....++...-+.+++||++.++
T Consensus       125 ------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       125 ------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             ------CcHHHHHHHHHhcccCCEEEEE
Confidence                  3358999999999999999998

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.93  E-value=0.082  Score=49.30  Aligned_cols=140  Identities=14%  Similarity=0.209  Sum_probs=72.4

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccc--cccccccCCCC---
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIG--IYHDWCEGFST---  139 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~--~~~~~~e~l~~---  139 (235)
                      |..++..++.... +|||+-||.|.|+..|++..   ..|++++.. +++..|.+    .|+-.  .++..++.+..   
T Consensus       186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~  261 (352)
T PF05958_consen  186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA  261 (352)
T ss_dssp             HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred             HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence            4545555555434 79999999999999999874   468899988 77775543    34321  22222222210   


Q ss_pred             -------------CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCceeE--
Q 026623          140 -------------YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTK--  203 (235)
Q Consensus       140 -------------~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~--  203 (235)
                                   ....+|+|+.    -  |.|..+...+.++  +.++.=.++||=++. ...-++.+.+  .|++.  
T Consensus       262 ~~r~~~~~~~~~~~~~~~d~vil----D--PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~v  331 (352)
T PF05958_consen  262 KAREFNRLKGIDLKSFKFDAVIL----D--PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEKV  331 (352)
T ss_dssp             CS-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEEE
T ss_pred             hhHHHHhhhhhhhhhcCCCEEEE----c--CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEEE
Confidence                         0135788764    1  2333333333333  235667888885554 4455555554  47764  


Q ss_pred             -eecCCCCCCCCceEEEEEec
Q 026623          204 -MMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       204 -~~~~~~~~~~~e~~l~~~k~  223 (235)
                       ..|.=....+-|.+.+-+|+
T Consensus       332 ~~~DmFP~T~HvE~v~lL~rk  352 (352)
T PF05958_consen  332 QPVDMFPQTHHVETVALLERK  352 (352)
T ss_dssp             EEE-SSTTSS--EEEEEEEE-
T ss_pred             EEeecCCCCCcEEEEEEEEeC
Confidence             33333344466777666653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.85  E-value=0.017  Score=46.63  Aligned_cols=43  Identities=21%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             CCCceEeeeccccchHHHHHhc-----CCCceeEEeecCcc-ccHHHHHHc
Q 026623           80 RRYRNVMDMNAGLGGFAAALES-----PKSWVMNVVPTTAK-NTLGVIYER  124 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~-----~~~~~~~V~~~D~s-~~L~~~~~R  124 (235)
                      .+...|+|+|||-|.++..|+.     .+  ...|+++|.. ..+..+.+|
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~--~~~v~~iD~~~~~~~~a~~~   72 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSP--NLRVLGIDCNESLVESAQKR   72 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCC--CCeEEEEECCcHHHHHHHHH
Confidence            4578999999999999998887     43  4579999998 555544443

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.83  E-value=0.022  Score=49.50  Aligned_cols=120  Identities=18%  Similarity=0.150  Sum_probs=55.2

Q ss_pred             cccccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchH--HHHHhcCCCceeEEeecCccccHHHHHH--
Q 026623           48 VEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGF--AAALESPKSWVMNVVPTTAKNTLGVIYE--  123 (235)
Q Consensus        48 ~~g~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~f--aa~L~~~~~~~~~V~~~D~s~~L~~~~~--  123 (235)
                      ..+++...|-+-.-   ..+..   ++..++..+....+|+|||.|..  .++|...   +...+|+.+...+..+.+  
T Consensus        15 y~~~s~~~YGEi~~---~~~~~---il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~---~~~~~GIEi~~~~~~~a~~~   85 (205)
T PF08123_consen   15 YKSFSSETYGEISP---EFVSK---ILDELNLTPDDVFYDLGSGVGNVVFQAALQTG---CKKSVGIEILPELHDLAEEL   85 (205)
T ss_dssp             STTTCCCCGGGCHH---HHHHH---HHHHTT--TT-EEEEES-TTSHHHHHHHHHH-----SEEEEEE-SHHHHHHHHHH
T ss_pred             cccCCCcceeecCH---HHHHH---HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC---CcEEEEEEechHHHHHHHHH
Confidence            34556666644432   22322   34444445567999999999974  4454432   223567666522221111  


Q ss_pred             ----------cCc-cccccccccCCCCCC--------CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          124 ----------RGL-IGIYHDWCEGFSTYP--------RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       124 ----------Rgl-~~~~~~~~e~l~~~p--------~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                                -|. .+.+.-.  .-.|.+        ..-|+|++++..-   + .++...|.++..-||||-.+|-.
T Consensus        86 ~~~~~~~~~~~g~~~~~v~l~--~gdfl~~~~~~~~~s~AdvVf~Nn~~F---~-~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen   86 LEELKKRMKHYGKRPGKVELI--HGDFLDPDFVKDIWSDADVVFVNNTCF---D-PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             HHHHHHHHHHCTB---EEEEE--CS-TTTHHHHHHHGHC-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             HHHHHHHHHHhhcccccceee--ccCccccHhHhhhhcCCCEEEEecccc---C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence                      122 1111000  111222        2358999976542   1 25667778888899988776543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.76  E-value=0.0065  Score=55.03  Aligned_cols=127  Identities=18%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cc-cccccCCCCCC-Ccccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IY-HDWCEGFSTYP-RTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~-~~~~e~l~~~p-~sFDlV  147 (235)
                      |...+..+|||++||.|+-+..|++.-.-...+++.|.+ ..+....++    |+..  .. .|..+..+..+ ..||.|
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V  160 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV  160 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred             ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence            455567789999999998766666521102368999998 666654433    4422  22 22112112223 469999


Q ss_pred             ee----hh--hhccCC------CCCCh-------HHHHHHHhhhh----cCCcEEEEEeCh----HHHHHHHHHHhcc-C
Q 026623          148 HA----NG--VFSLYE------NTCKP-------EDILLEMDRIL----RPEGAVIFRDEV----DALNKVRKFAEGM-R  199 (235)
Q Consensus       148 ~a----~~--vl~h~~------~~~~~-------~~~L~Em~RVL----RPGG~lii~d~~----~~~~~i~~~~~~~-~  199 (235)
                      ..    +.  ++.+-+      ...++       ..+|....+.|    ||||+++-+...    +--.-|+.+++.- .
T Consensus       161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~  240 (283)
T PF01189_consen  161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPD  240 (283)
T ss_dssp             EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTS
T ss_pred             hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCC
Confidence            85    22  233211      11111       17889999999    999999999632    1122345555543 4


Q ss_pred             ceeE
Q 026623          200 WDTK  203 (235)
Q Consensus       200 W~~~  203 (235)
                      +++.
T Consensus       241 ~~l~  244 (283)
T PF01189_consen  241 FELV  244 (283)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            4443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.72  E-value=0.07  Score=47.85  Aligned_cols=96  Identities=24%  Similarity=0.281  Sum_probs=59.2

Q ss_pred             CCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc---ccHHHHHHcCc----------cccccccccCCC--CCCCc
Q 026623           81 RYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK---NTLGVIYERGL----------IGIYHDWCEGFS--TYPRT  143 (235)
Q Consensus        81 ~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s---~~L~~~~~Rgl----------~~~~~~~~e~l~--~~p~s  143 (235)
                      ...+||.+|+|+|  +.++++..    ..+++-.|.+   ..|+...+++.          +....+|-+++.  +++..
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~----~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL----GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh----cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence            4678999999999  55555543    2467666665   34444433321          223356666554  34444


Q ss_pred             -cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          144 -YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       144 -FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                       ||+|+++.++.+....+.++   .=|.-.|-.+|.+++.-
T Consensus       162 ~~DlilasDvvy~~~~~e~Lv---~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  162 PFDLILASDVVYEEESFEGLV---KTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             cccEEEEeeeeecCCcchhHH---HHHHHHHhcCCeEEEEE
Confidence             99999999998765444444   44455577777655553

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.65  E-value=0.0093  Score=50.46  Aligned_cols=44  Identities=11%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             CCCccceeeehhhhccC-----CCCCC---hHHHHHHHhhhhcCCcEEEEEe
Q 026623          140 YPRTYDLIHANGVFSLY-----ENTCK---PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~-----~~~~~---~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |.++||.+.|-++++|.     -+.-+   -...+.++.|+|||||.+++.-
T Consensus        60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence            67999999999999885     12222   2588999999999999999994

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.65  E-value=0.05  Score=52.39  Aligned_cols=109  Identities=17%  Similarity=0.267  Sum_probs=70.5

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccc--cccccccCCCCC--
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIG--IYHDWCEGFSTY--  140 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~--~~~~~~e~l~~~--  140 (235)
                      |...+..++.....+|||+=||.|+|+..|+++   +..|.+++++ +++..+.+    -|+..  ......|.+..-  
T Consensus       282 ~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~  358 (432)
T COG2265         282 YETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW  358 (432)
T ss_pred             HHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence            444555566555679999999999999999965   4578899888 66665433    24322  122333444322  


Q ss_pred             -CCccceeeehhhhccCCCCCChH-HHHHHHhhhhcCCcEEEEEeChHHH
Q 026623          141 -PRTYDLIHANGVFSLYENTCKPE-DILLEMDRILRPEGAVIFRDEVDAL  188 (235)
Q Consensus       141 -p~sFDlV~a~~vl~h~~~~~~~~-~~L~Em~RVLRPGG~lii~d~~~~~  188 (235)
                       ...||+|+.    -  |.|+-+. .++.++.+ ++|-..++||=++..+
T Consensus       359 ~~~~~d~Vvv----D--PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         359 EGYKPDVVVV----D--PPRAGADREVLKQLAK-LKPKRIVYVSCNPATL  401 (432)
T ss_pred             ccCCCCEEEE----C--CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHH
Confidence             258899975    1  3444555 55555554 6788899999777654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.61  E-value=0.041  Score=48.12  Aligned_cols=111  Identities=17%  Similarity=0.249  Sum_probs=66.0

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcC---CCceeEEeecCcc-------ccHH-HHHHcCccc--cccccccCCCC
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESP---KSWVMNVVPTTAK-------NTLG-VIYERGLIG--IYHDWCEGFST  139 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~---~~~~~~V~~~D~s-------~~L~-~~~~Rgl~~--~~~~~~e~l~~  139 (235)
                      +|...+-....+|.|+=-|.|.|++-|...   ...|.+++|.+..       ..+. ++++.+.-.  .+-..--++. 
T Consensus        40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-  118 (238)
T COG4798          40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-  118 (238)
T ss_pred             eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-
Confidence            343334455789999999999998888763   1246677777762       1122 222222211  1110001233 


Q ss_pred             CCCccceeeehhhhc--cCC--CCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          140 YPRTYDLIHANGVFS--LYE--NTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~--h~~--~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      .|+-.|++..+..-|  |.+  +.....++-.++++.|||||.+.+-|+
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            347777776644443  211  223467999999999999999999974

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.50  E-value=0.038  Score=48.08  Aligned_cols=133  Identities=16%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCc----------cccccccccCCCCCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL----------IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl----------~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+|||+||..|....--.++-.-..-|.++|+-.   +.--+|.          +.++....|.||  .+..|+|.+.
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp--~r~VdvVlSD  143 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---IEPPEGATIIQGNDVTDPETYRKIFEALP--NRPVDVVLSD  143 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---ccCCCCcccccccccCCHHHHHHHHHhCC--CCcccEEEec
Confidence            467999999999987654443210122356666621   1111221          111222235554  4888998875


Q ss_pred             hhh--------ccCC--CCCChHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCCCCCCCCc
Q 026623          151 GVF--------SLYE--NTCKPEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPE  215 (235)
Q Consensus       151 ~vl--------~h~~--~~~~~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e  215 (235)
                      +.=        .|+.  +-|+  .+|.=.--.|+|+|.|++--     .......+++....++  ..+++.-.+. ..|
T Consensus       144 MapnaTGvr~~Dh~~~i~LC~--s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk--~vKP~Asr~e-S~E  218 (232)
T KOG4589|consen  144 MAPNATGVRIRDHYRSIELCD--SALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK--KVKPDASRDE-SAE  218 (232)
T ss_pred             cCCCCcCcchhhHHHHHHHHH--HHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE--eeCCcccccc-ccc
Confidence            432        1221  1111  22322334567999999972     2333444444433322  1122222111 579


Q ss_pred             eEEEEEec
Q 026623          216 KILIAVKQ  223 (235)
Q Consensus       216 ~~l~~~k~  223 (235)
                      .+|+|++.
T Consensus       219 ~y~v~~~~  226 (232)
T KOG4589|consen  219 TYLVCLNF  226 (232)
T ss_pred             eeeeeeec
Confidence            99999763

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.36  E-value=0.066  Score=51.41  Aligned_cols=102  Identities=21%  Similarity=0.380  Sum_probs=63.2

Q ss_pred             hCCCCCceEeeeccccch---HHHHHhc-CCCceeEEeecCcc-ccHHH----HHHcCccccc---cccccCCC--CCCC
Q 026623           77 IGTRRYRNVMDMNAGLGG---FAAALES-PKSWVMNVVPTTAK-NTLGV----IYERGLIGIY---HDWCEGFS--TYPR  142 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~---faa~L~~-~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~~~---~~~~e~l~--~~p~  142 (235)
                      +.+.++.+||||+|..||   +.|+|.+ .|    -|.+-|.. +.+..    +.+-|+.+++   +|- ..||  -++.
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~-~ef~~~~~~~  311 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG-REFPEKEFPG  311 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCc-ccccccccCc
Confidence            566778999999999996   4444443 44    37788876 55553    3334654433   332 2344  1346


Q ss_pred             ccceee----ehh--hhccCCCCCCh-------------HHHHHHHhhhhcCCcEEEEEe
Q 026623          143 TYDLIH----ANG--VFSLYENTCKP-------------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       143 sFDlV~----a~~--vl~h~~~~~~~-------------~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +||-|.    |+.  |++--+..|-.             .++|...--.+||||+++-++
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            999988    566  55432111111             155666667899999999996

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.27  E-value=0.0059  Score=48.27  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=37.1

Q ss_pred             ccceeeehhhhc--cCCC-CCChHHHHHHHhhhhcCCcEEEEEeC--------hHHHHHHHHHHhccCcee
Q 026623          143 TYDLIHANGVFS--LYEN-TCKPEDILLEMDRILRPEGAVIFRDE--------VDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       143 sFDlV~a~~vl~--h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~--------~~~~~~i~~~~~~~~W~~  202 (235)
                      .||+|.|-+|--  |+.. ++.+..++..|.+.|||||.||+--.        ....+.+...+++++++-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP   71 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP   71 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence            489999966654  4421 12477999999999999999999842        112455666677777653

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK11524 putative methyltransferase; Provisional

Probab=95.24  E-value=0.056  Score=48.70  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             HHHHHHHhhhhcCCcEEEEEeChHH
Q 026623          163 EDILLEMDRILRPEGAVIFRDEVDA  187 (235)
Q Consensus       163 ~~~L~Em~RVLRPGG~lii~d~~~~  187 (235)
                      ..+|.|+.|+|||||.+++.-....
T Consensus        60 ~~~l~~~~rvLK~~G~i~i~~~~~~   84 (284)
T PRK11524         60 YEWIDECHRVLKKQGTMYIMNSTEN   84 (284)
T ss_pred             HHHHHHHHHHhCCCcEEEEEcCchh
Confidence            5799999999999999998755443

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.12  E-value=0.033  Score=47.47  Aligned_cols=121  Identities=17%  Similarity=0.261  Sum_probs=70.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc----ccHHHHHHcCcccc--------ccccccCCCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK----NTLGVIYERGLIGI--------YHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s----~~L~~~~~Rgl~~~--------~~~~~e~l~~~p~sFDlV~  148 (235)
                      +.++||.+|.|.=+++--|....+-.-.|--.|..    ..++.+..+.....        .+.|-....-..++||+|.
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            46899999999988888777643333344444543    34444443321010        1111111221337999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHHhccCceeEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~~~~~W~~~~  204 (235)
                      |++-+-.-   +--+.++.-|.+.|||.|..++.-+.  +.+.+..+.+...-..+..
T Consensus       109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l  163 (201)
T KOG3201|consen  109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL  163 (201)
T ss_pred             eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence            85544211   12358888999999999998887543  3455555555555554443

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.00  E-value=0.067  Score=47.50  Aligned_cols=99  Identities=19%  Similarity=0.299  Sum_probs=68.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccccccCCCCCC-Cccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEGFSTYP-RTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~l~~~p-~sFDlV~a~~  151 (235)
                      .++++||.+|=|-|-...++.+++.-. .. -+... +.++..++-|-      +...--|-..+++.| +.||-|.-..
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~-H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDE-HW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcc-eE-EEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence            457899999999999888888875422 22 23334 66666655542      222344555677766 8999998543


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .=.|+   +++-.+-+-+-|.|||||.+-...
T Consensus       178 y~e~y---Edl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  178 YSELY---EDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             hhhHH---HHHHHHHHHHhhhcCCCceEEEec
Confidence            33454   367788889999999999998875

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=94.95  E-value=0.1  Score=44.91  Aligned_cols=101  Identities=20%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---ccccccccc-CCCCCC--Cccceee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCE-GFSTYP--RTYDLIH  148 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e-~l~~~p--~sFDlV~  148 (235)
                      ..+.++||+=||+|.++..=..++.  ..++-+|.+ ....++.+.    ++   ...++..+. .|+...  +.||+|+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf  119 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF  119 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence            3567999999999999988888874  468888887 666655443    21   222222222 223233  3599999


Q ss_pred             ehhhhccCCCCCCh--HHHHH--HHhhhhcCCcEEEEEeChH
Q 026623          149 ANGVFSLYENTCKP--EDILL--EMDRILRPEGAVIFRDEVD  186 (235)
Q Consensus       149 a~~vl~h~~~~~~~--~~~L~--Em~RVLRPGG~lii~d~~~  186 (235)
                      ..==++    ..-+  +..+.  +-...|+|+|.+++-...+
T Consensus       120 lDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 LDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             eCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            744333    1122  23333  3568899999999986554

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.95  E-value=0.077  Score=44.55  Aligned_cols=111  Identities=15%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             ccccccchHHHHHHHHHHHHHhh-hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----
Q 026623           53 GKSYQEDSKLWKKHVNAYKKMNS-LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----  126 (235)
Q Consensus        53 ~~~f~~d~~~W~~~v~~y~~~l~-~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----  126 (235)
                      -|.|....+.    +..+..++. -.+.-.+..++|+|||.|-+..+....+  .-.|+|+|+. +.|++......    
T Consensus        23 LEQY~T~p~i----AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEv   96 (185)
T KOG3420|consen   23 LEQYPTRPHI----AASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFEV   96 (185)
T ss_pred             hhhCCCcHHH----HHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhhh
Confidence            3456666554    233333332 3565567899999999998764444332  2369999998 88886433211    


Q ss_pred             -cccccccccCCC--CCCCccceeeehhhhccCCCCCChH--HHHHHHhh
Q 026623          127 -IGIYHDWCEGFS--TYPRTYDLIHANGVFSLYENTCKPE--DILLEMDR  171 (235)
Q Consensus       127 -~~~~~~~~e~l~--~~p~sFDlV~a~~vl~h~~~~~~~~--~~L~Em~R  171 (235)
                       +..+.  |.-+.  +-.+.||.++.+-=|---.+..|++  ++-.||.|
T Consensus        97 qidlLq--cdildle~~~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~  144 (185)
T KOG3420|consen   97 QIDLLQ--CDILDLELKGGIFDTAVINPPFGTKKKGADMEFVSAALKVAS  144 (185)
T ss_pred             hhheee--eeccchhccCCeEeeEEecCCCCcccccccHHHHHHHHHHHH
Confidence             11111  22122  1228999999887775322223443  44445554

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=94.92  E-value=0.083  Score=46.15  Aligned_cols=97  Identities=26%  Similarity=0.280  Sum_probs=59.2

Q ss_pred             CCCCceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCc-cccccccccCCCCCCCccceeeeh
Q 026623           79 TRRYRNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGV----IYERGL-IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ..+.++|||+|+|.|-  .++++.-    ...|+..|.. ...+.    +...|. +...|..+   -..|..||+|.++
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG----A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~Lag  149 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG----AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAG  149 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh----hHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEee
Confidence            3467899999999994  4555442    2245555655 22222    222332 34445322   2256999999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      .+|..   +..-..++.=.+|+...|-.+++-|..
T Consensus       150 Dlfy~---~~~a~~l~~~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         150 DLFYN---HTEADRLIPWKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             ceecC---chHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            99962   233456777556666667777777754

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.80  E-value=0.077  Score=47.16  Aligned_cols=98  Identities=16%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             CCCCCceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCc---cccccc-cccCCC----CCC-
Q 026623           78 GTRRYRNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGV----IYERGL---IGIYHD-WCEGFS----TYP-  141 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl---~~~~~~-~~e~l~----~~p-  141 (235)
                      ...+.++.||+|.=||.  ++.+|+=-.  ...|+.+|.. +....    ....|.   +...+. -||.|+    -.+ 
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~--dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~  147 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPE--DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES  147 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCC--CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence            33346799999976664  444443211  2357888876 44443    333343   222222 123332    234 


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|||+++.    -|.+  .+-.....+.-|.|||||.+++..
T Consensus       148 ~tfDfaFv----DadK--~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  148 GTFDFAFV----DADK--DNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             CceeEEEE----ccch--HHHHHHHHHHHhhcccccEEEEec
Confidence            99999985    3332  244588999999999999999984

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.57  E-value=0.16  Score=44.99  Aligned_cols=91  Identities=15%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             CCceEeeeccc-cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC----C-CCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAG-LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG----F-STYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG-~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~----l-~~~p~sFDlV~a~~vl  153 (235)
                      ...+||..||| .|.++..++....  .+|+.++.+ +.++.+.+.|....+......    + ....+.+|+|+...  
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~--  240 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV--  240 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC--
Confidence            35688888876 4777777776421  246777766 777777666752222111010    1 11236789886411  


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                             .....+.++.|.|+|+|.++..
T Consensus       241 -------g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         241 -------GTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             -------CCHHHHHHHHHHhhcCCEEEEE
Confidence                   1246899999999999999976

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.40  E-value=0.15  Score=51.89  Aligned_cols=79  Identities=8%  Similarity=0.014  Sum_probs=44.1

Q ss_pred             EEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCC-C-Cccceeeehhhhc-cCCCCCChHHHHHHHhhhh---
Q 026623          108 NVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTY-P-RTYDLIHANGVFS-LYENTCKPEDILLEMDRIL---  173 (235)
Q Consensus       108 ~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~-p-~sFDlV~a~~vl~-h~~~~~~~~~~L~Em~RVL---  173 (235)
                      .++++|.+ .++..+.+.    |+.   ...+..+..++.. + ++||+|++|-=+- .+.+..++..+..++.+.|   
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            58999998 888865543    552   2333333344432 2 6899999963321 1112123344444444444   


Q ss_pred             cCCcEEEEEeChH
Q 026623          174 RPEGAVIFRDEVD  186 (235)
Q Consensus       174 RPGG~lii~d~~~  186 (235)
                      .||+.+++-....
T Consensus       338 ~~g~~~~llt~~~  350 (702)
T PRK11783        338 FGGWNAALFSSSP  350 (702)
T ss_pred             CCCCeEEEEeCCH
Confidence            4998887765543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=94.35  E-value=0.094  Score=47.32  Aligned_cols=70  Identities=20%  Similarity=0.247  Sum_probs=45.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCC--ccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPR--TYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~--sFDlV~a  149 (235)
                      ++..+..+||.+|+|.|.++..|.++..   .|+++.+- .+.+...++-    -+..++.++-.+. +++  .++.|++
T Consensus        26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~~~~vVa  101 (259)
T COG0030          26 ANISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQPYKVVA  101 (259)
T ss_pred             cCCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcCCCEEEE
Confidence            3334467999999999999999999853   47777776 5555544442    2334444333333 233  6788887


Q ss_pred             h
Q 026623          150 N  150 (235)
Q Consensus       150 ~  150 (235)
                      |
T Consensus       102 N  102 (259)
T COG0030         102 N  102 (259)
T ss_pred             c
Confidence            4

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.17  E-value=0.058  Score=48.01  Aligned_cols=98  Identities=13%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCC---Cccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYP---RTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p---~sFDlV~  148 (235)
                      ++......|||+|+|+|.++.+|.+.+   .+++.++.. ...+...++    +-+..++.+.-.+.++.   +...+|+
T Consensus        26 ~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv  102 (262)
T PF00398_consen   26 LDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVV  102 (262)
T ss_dssp             HTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEE
T ss_pred             cCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEE
Confidence            343357899999999999999999875   468888887 565655553    22334443333344333   3455676


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcC---CcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRP---EGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRP---GG~lii~d  183 (235)
                      +|-=+ ++     -..++..+-+.-+.   ..++++..
T Consensus       103 ~NlPy-~i-----s~~il~~ll~~~~~g~~~~~l~vq~  134 (262)
T PF00398_consen  103 GNLPY-NI-----SSPILRKLLELYRFGRVRMVLMVQK  134 (262)
T ss_dssp             EEETG-TG-----HHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred             EEecc-cc-----hHHHHHHHhhcccccccceEEEEeh
Confidence            65433 22     13555555553333   35555553

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.91  E-value=0.14  Score=47.61  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=35.1

Q ss_pred             CCceEeeeccccchHHHHHhc---------------CCCceeEEeecCcc-ccHHHHHHc-----------------Ccc
Q 026623           81 RYRNVMDMNAGLGGFAAALES---------------PKSWVMNVVPTTAK-NTLGVIYER-----------------GLI  127 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~---------------~~~~~~~V~~~D~s-~~L~~~~~R-----------------gl~  127 (235)
                      ..-+|.|+||..|.-+..+.+               .+.-...|.--|.+ +--...+..                 |++
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            456999999999975433321               11123567777776 433322221                 223


Q ss_pred             ccccccccCCCCCC-CccceeeehhhhccCC
Q 026623          128 GIYHDWCEGFSTYP-RTYDLIHANGVFSLYE  157 (235)
Q Consensus       128 ~~~~~~~e~l~~~p-~sFDlV~a~~vl~h~~  157 (235)
                      |.+++   +  .+| +|.|++|++..||++.
T Consensus        96 gSFy~---r--LfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   96 GSFYG---R--LFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             S-TTS-------S-TT-EEEEEEES-TTB-S
T ss_pred             chhhh---c--cCCCCceEEEEEechhhhcc
Confidence            33331   1  245 9999999999999764

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=93.59  E-value=0.11  Score=50.52  Aligned_cols=101  Identities=18%  Similarity=0.170  Sum_probs=63.9

Q ss_pred             CCceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHHHHH--cC--ccc-------cccccccCCCCCC-Cccc
Q 026623           81 RYRNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGVIYE--RG--LIG-------IYHDWCEGFSTYP-RTYD  145 (235)
Q Consensus        81 ~~r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~~~~--Rg--l~~-------~~~~~~e~l~~~p-~sFD  145 (235)
                      ..+.++|+|-|.|.  .++.+.-.. ....++-+|-+ .|+..+..  |+  -++       ..|+  ..+|--. +.||
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r--~~~pi~~~~~yD  276 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR--QRLPIDIKNGYD  276 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc--ccCCCCccccee
Confidence            44668999888774  333333221 12346778888 77764322  22  011       1121  2345334 6799


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhh-hhcCCcEEEEEeC
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDR-ILRPEGAVIFRDE  184 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~R-VLRPGG~lii~d~  184 (235)
                      +|+|++.++++.+...-.++..+..| ..||||++++-+.
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~  316 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK  316 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence            99999999998766655677777765 6899999999863

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.32  E-value=1.9  Score=38.01  Aligned_cols=134  Identities=19%  Similarity=0.199  Sum_probs=78.3

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-----ccHHHHHHcCc-cccccccccCCCC-C---CCcccee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-----NTLGVIYERGL-IGIYHDWCEGFST-Y---PRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-----~~L~~~~~Rgl-~~~~~~~~e~l~~-~---p~sFDlV  147 (235)
                      .-..+.+||=+|+.+|+....+.+--. ..-+.++.+|     +.|.++.+|-. +..+-| + .+|- |   =...|+|
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D-A-~~P~~Y~~~Ve~VDvi  149 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED-A-RKPEKYRHLVEKVDVI  149 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc-c-CCcHHhhhhcccccEE
Confidence            345578999999999998888876310 1125566655     45557777764 334322 1 2331 2   2567887


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE----------eChHHHH-HHHHHHhccCceeEe-ecCCCCCCCCc
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR----------DEVDALN-KVRKFAEGMRWDTKM-MDHEDGPLMPE  215 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~----------d~~~~~~-~i~~~~~~~~W~~~~-~~~~~~~~~~e  215 (235)
                      ++     -+.++...+-+..-++.-||+||++++.          |..++.. +++++ +.-..++.- .+.  .|.+++
T Consensus       150 y~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL-~~~~f~i~e~~~L--ePye~D  221 (231)
T COG1889         150 YQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKL-EEGGFEILEVVDL--EPYEKD  221 (231)
T ss_pred             EE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHH-HhcCceeeEEecc--CCcccc
Confidence            65     2223334556777789999999988877          2333333 44444 444455542 222  244566


Q ss_pred             eEEEEEe
Q 026623          216 KILIAVK  222 (235)
Q Consensus       216 ~~l~~~k  222 (235)
                      -++|.-|
T Consensus       222 H~~i~~~  228 (231)
T COG1889         222 HALIVAK  228 (231)
T ss_pred             eEEEEEe
Confidence            6666554

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=93.10  E-value=0.31  Score=45.40  Aligned_cols=61  Identities=16%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--------eC--------hH-HHHHHHHHHhccCceeEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--------DE--------VD-ALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--------d~--------~~-~~~~i~~~~~~~~W~~~~  204 (235)
                      ++||+|+..+.+.   .-.++-+.|.-|..+|||||..|=.        |.        .+ ..+.+.++++.+.|++..
T Consensus       258 ~~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k  334 (369)
T KOG2798|consen  258 GSYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK  334 (369)
T ss_pred             CccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence            4799999876553   2236889999999999999987744        31        12 267789999999999875


Q ss_pred             e
Q 026623          205 M  205 (235)
Q Consensus       205 ~  205 (235)
                      .
T Consensus       335 e  335 (369)
T KOG2798|consen  335 E  335 (369)
T ss_pred             e
Confidence            4

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.02  E-value=0.033  Score=49.80  Aligned_cols=134  Identities=16%  Similarity=0.219  Sum_probs=76.0

Q ss_pred             CceEeeeccccchHHHHHhcC------CCcee--EEeecCccccHHHHHHcCcccccccc------ccCCCCCC-Cccce
Q 026623           82 YRNVMDMNAGLGGFAAALESP------KSWVM--NVVPTTAKNTLGVIYERGLIGIYHDW------CEGFSTYP-RTYDL  146 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~------~~~~~--~V~~~D~s~~L~~~~~Rgl~~~~~~~------~e~l~~~p-~sFDl  146 (235)
                      ..+|.|+++..|+....|.++      +--..  -++++|+..|.++   +|++...-|.      -.-+..|. .--|+
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAdl  118 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKADL  118 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence            789999999999987776542      10011  2888888766553   2322111110      01123355 58899


Q ss_pred             eeehhh-----hccC---CCCCChHHHHHHHhhhhcCCcEEEEE-----eChHHHHHHHHHHhccCceeEeecCCCCCCC
Q 026623          147 IHANGV-----FSLY---ENTCKPEDILLEMDRILRPEGAVIFR-----DEVDALNKVRKFAEGMRWDTKMMDHEDGPLM  213 (235)
Q Consensus       147 V~a~~v-----l~h~---~~~~~~~~~L~Em~RVLRPGG~lii~-----d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~  213 (235)
                      |+|...     +|-+   .+-.-+..+|.=.-+||||||.|+--     +..-.-..++.+.++++=  .++.+..++ .
T Consensus       119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~~--~KPrsSR~s-S  195 (294)
T KOG1099|consen  119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVTC--AKPRSSRNS-S  195 (294)
T ss_pred             EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhceee--ecCCccccc-c
Confidence            998554     2211   01122346777788999999999864     222233456666666542  233333333 4


Q ss_pred             CceEEEEE
Q 026623          214 PEKILIAV  221 (235)
Q Consensus       214 ~e~~l~~~  221 (235)
                      -|-+++|+
T Consensus       196 iEaFvvC~  203 (294)
T KOG1099|consen  196 IEAFVVCL  203 (294)
T ss_pred             ceeeeeec
Confidence            67888885

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=92.88  E-value=0.11  Score=41.06  Aligned_cols=39  Identities=15%  Similarity=0.222  Sum_probs=28.7

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE  123 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~  123 (235)
                      .|||+|||.|.++..++.... ...+.+++.. .+.+.+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~   40 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEE   40 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHH
Confidence            489999999999988887542 1268888887 66654433

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=92.77  E-value=0.4  Score=44.94  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..||||=||.|.|+..++.++.  ..|+++|+. .......+.    ++   +..++.+|..+...-+.||-|+.+..-
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            67899999999999999988764  238999997 655543332    33   334455566566344899999875443


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-------HHHHHHHHHhccC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-------ALNKVRKFAEGMR  199 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-------~~~~i~~~~~~~~  199 (235)
                             +-..++-..-+.||+||.+-.-+..+       ....+++...++.
T Consensus       267 -------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~  312 (341)
T COG2520         267 -------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGG  312 (341)
T ss_pred             -------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhcc
Confidence                   22467778888999999988775321       3456677666553

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=91.57  E-value=1.2  Score=38.63  Aligned_cols=133  Identities=15%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             EeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH----HHcCccccccc-cccCCCCC-C-CccceeeehhhhccC
Q 026623           85 VMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI----YERGLIGIYHD-WCEGFSTY-P-RTYDLIHANGVFSLY  156 (235)
Q Consensus        85 VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~----~~Rgl~~~~~~-~~e~l~~~-p-~sFDlV~a~~vl~h~  156 (235)
                      |.|+||--|.+..+|.+.+. +..++++|++ .-|+.+    ...|+...+.- .+..|... + +..|.|+.+.+=-  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--
Confidence            68999999999999999874 5578899997 555543    33465432211 12224322 3 3367776543322  


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEecc
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQY  224 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~~  224 (235)
                         .-+.++|.+....++..-.||+.-... ...+++.+....|.+..-+.-.....--.|+.+.++-
T Consensus        78 ---~lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~  141 (205)
T PF04816_consen   78 ---ELIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGE  141 (205)
T ss_dssp             ---HHHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             ---HHHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCC
Confidence               135688998989998888899987653 4578899999999876322211111233456665543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=91.45  E-value=0.043  Score=41.49  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             eeeccccchHHHHHhcC--CCceeEEeecCccc---cHH-HHHHcCccccc---cccc-cCCCCCC-Cccceeeehhhhc
Q 026623           86 MDMNAGLGGFAAALESP--KSWVMNVVPTTAKN---TLG-VIYERGLIGIY---HDWC-EGFSTYP-RTYDLIHANGVFS  154 (235)
Q Consensus        86 LD~GCG~G~faa~L~~~--~~~~~~V~~~D~s~---~L~-~~~~Rgl~~~~---~~~~-e~l~~~p-~sFDlV~a~~vl~  154 (235)
                      |.+|+..|..+..|.+.  ..-...++.+|...   ..+ .+.+.++...+   .... +.++.++ +.||+++...-  
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~--   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD--   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence            57898899877666642  10012466777653   222 33333442222   1111 1233344 89999997431  


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |-  .......+..+.+.|+|||.+++-|
T Consensus        79 H~--~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 HS--YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            11  0134577888889999999999865

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=91.45  E-value=1.7  Score=39.53  Aligned_cols=138  Identities=13%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH-----cCcc---ccccccccCCCCCC-Cccceeeeh
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE-----RGLI---GIYHDWCEGFSTYP-RTYDLIHAN  150 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~-----Rgl~---~~~~~~~e~l~~~p-~sFDlV~a~  150 (235)
                      .++|+=+|||.=-+++-+..+ -.-...|.++|.. +..+.+.+     -||-   ..........+ .+ ..||+|+.+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEh
Confidence            359999999987776655542 1113467888887 55554321     2331   11221122223 45 899999876


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH---HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD---ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      ....-  +..+=+++|..+.+.++||..+++|....   ++...-....--.|++-...++.+. .-+-+++++|.
T Consensus       200 alVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~~rk~  272 (276)
T PF03059_consen  200 ALVGM--DAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVFARKK  272 (276)
T ss_dssp             TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT----EEEEE---
T ss_pred             hhccc--ccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence            66642  23456799999999999999999996432   1111111111126777655565444 56778999885

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=91.39  E-value=0.51  Score=38.82  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             EeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCC-C-CccceeeehhhhccCCCC--------CChHHHHHHHh
Q 026623          109 VVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTY-P-RTYDLIHANGVFSLYENT--------CKPEDILLEMD  170 (235)
Q Consensus       109 V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~-p-~sFDlV~a~~vl~h~~~~--------~~~~~~L~Em~  170 (235)
                      |.++|+- ..+....+|    |+.   ..+++.=|.+.-| + +.+|+++-|..  ++|..        ..-..+|....
T Consensus         2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHHH
Confidence            6778886 666644443    332   2222222445433 3 48999886544  34421        11238999999


Q ss_pred             hhhcCCcEEEEEe------ChHHHHHHHHHHhcc---CceeEeecCCCCCCCCceEEEEEe
Q 026623          171 RILRPEGAVIFRD------EVDALNKVRKFAEGM---RWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       171 RVLRPGG~lii~d------~~~~~~~i~~~~~~~---~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      ++|+|||.++|.-      ..+..+.+.++++++   .|.|..+...+-.+....+++.+|
T Consensus        80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK  140 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK  140 (140)
T ss_dssp             HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred             HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence            9999999999984      123455666776654   678887777766666677777765

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.36  E-value=0.39  Score=44.99  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             CCCceEeeeccc-cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccc-ccCCCCCCCccceeeehhhhccC
Q 026623           80 RRYRNVMDMNAG-LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW-CEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        80 ~~~r~VLD~GCG-~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~-~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                      .+...|+=+|+| .|.++..+++.-  .++|+.+|.+ +.++.+.+-|....+... -+.+.-..+.||+|+..-     
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-----  237 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-----  237 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-----
Confidence            345677777776 446777777632  2689999999 889998888764443211 111121224599998522     


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                          . ...+...-+.||+||.+++-=..
T Consensus       238 ----~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         238 ----G-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence                2 56788888999999999998433

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.93  E-value=1  Score=41.70  Aligned_cols=101  Identities=18%  Similarity=0.046  Sum_probs=60.6

Q ss_pred             CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc---c--ccccCC-CC-CCCccceeeeh
Q 026623           81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY---H--DWCEGF-ST-YPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~---~--~~~e~l-~~-~p~sFDlV~a~  150 (235)
                      ...+||..|||. |.++..+++. +.  ..++.++.+ ++++.+.+.+-...+   .  ++.+.+ .. ..+.+|+|+-.
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~--~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGA--ERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            456899999987 7777777664 32  247777777 788888777311111   1  011111 11 22478988753


Q ss_pred             hh-------hccC-----CCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GV-------FSLY-----ENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~v-------l~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..       ++++     ....+....+.++.|.|+|+|.+++..
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            21       1111     001123578999999999999999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=90.43  E-value=0.59  Score=42.87  Aligned_cols=112  Identities=19%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--cc-----ccccccccCCCCCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LI-----GIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~-----~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      .+...||.+|-|||.++..|.+.+   ..|+++..- .|.....+|+  ..     .++|  |+.|.+..-.||+++++.
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~--gD~lK~d~P~fd~cVsNl  131 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH--GDFLKTDLPRFDGCVSNL  131 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEe--cccccCCCcccceeeccC
Confidence            446789999999999999999986   358888887 7777776764  22     1223  344554446788888732


Q ss_pred             --------hhccCC----CCCChHHHHHHH--hhhhcCCcEEEEEeCh--HHHHHHHHHHh
Q 026623          152 --------VFSLYE----NTCKPEDILLEM--DRILRPEGAVIFRDEV--DALNKVRKFAE  196 (235)
Q Consensus       152 --------vl~h~~----~~~~~~~~L~Em--~RVLRPGG~lii~d~~--~~~~~i~~~~~  196 (235)
                              ||-.+.    -+|.+..+-+|.  .-+-|||-.++++-+.  +++..++-+.+
T Consensus       132 PyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~K  192 (315)
T KOG0820|consen  132 PYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMK  192 (315)
T ss_pred             CccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhhee
Confidence                    232221    234432222332  2266888888887543  44555554443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=89.80  E-value=0.28  Score=41.01  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=19.4

Q ss_pred             hHHHHHHHhhhhcCCcEEEEE
Q 026623          162 PEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +...+.|+.|||||||.+++.
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~   55 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIF   55 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCeeEEEE
Confidence            468999999999999999988

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=89.38  E-value=0.39  Score=47.23  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             cccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH
Q 026623           50 GVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE  123 (235)
Q Consensus        50 g~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~  123 (235)
                      .+|+.+|=..+..  ..-.-|..+-+..+-.....+||+.||||.|+.+|++.   +..|.|+..+ +.+..|..
T Consensus       354 ~iSp~AFFQ~Nt~--~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~  423 (534)
T KOG2187|consen  354 RISPGAFFQTNTS--AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEK  423 (534)
T ss_pred             EECCchhhccCcH--HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhh
Confidence            4566655444442  11223554444444444578999999999999999875   3457788777 66665543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=89.33  E-value=3.2  Score=37.26  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=39.9

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCCCC--CCccceeeehh
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFSTY--PRTYDLIHANG  151 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~~--p~sFDlV~a~~  151 (235)
                      +|+|+-||.|++...|...+.  -.+.++|.. ..++ .+++-... .++...+.+...  ...+|+++++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~-~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAE-TYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHH-HHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence            689999999999888887763  347788887 4443 33332221 122222333221  35699999854

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=88.67  E-value=4.3  Score=37.36  Aligned_cols=119  Identities=14%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHH-----HHHHcCcc---cc-ccccccC-CCCCCCccc
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLG-----VIYERGLI---GI-YHDWCEG-FSTYPRTYD  145 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~-----~~~~Rgl~---~~-~~~~~e~-l~~~p~sFD  145 (235)
                      .|.-.++..|+..|.|.|++.-+++..=.-...+.-+|+.++..     --.+.|+.   .. ..|.|.. |.-....+|
T Consensus       100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD  179 (314)
T KOG2915|consen  100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD  179 (314)
T ss_pred             HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence            34445678999999999999888876311134677788763332     23334542   22 2444542 222247888


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--eChHHHHHHHHHHhccCcee
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--DEVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d~~~~~~~i~~~~~~~~W~~  202 (235)
                      .|+.        |-..+-.++--.+.+||-+|.-+++  -..+.+++--..+.+..|.-
T Consensus       180 aVFL--------DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~  230 (314)
T KOG2915|consen  180 AVFL--------DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIE  230 (314)
T ss_pred             eEEE--------cCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCce
Confidence            8875        3234445666666799988754444  33455555556677888853

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=88.08  E-value=3.5  Score=39.08  Aligned_cols=128  Identities=20%  Similarity=0.169  Sum_probs=72.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC--CCce-eEEeecCcc----ccHHHHHHcCc----cccccccccCCCC------
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP--KSWV-MNVVPTTAK----NTLGVIYERGL----IGIYHDWCEGFST------  139 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~--~~~~-~~V~~~D~s----~~L~~~~~Rgl----~~~~~~~~e~l~~------  139 (235)
                      |+-.+..+||||++..|+=+++|.+.  ..|. ..|++=|..    ++|.-...|-.    ..+-|+ ...+|-      
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~-~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHD-ASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccc-ceeccccccccC
Confidence            45556789999999999988777652  1111 146665654    45544444421    111121 111221      


Q ss_pred             --CC-Cccceeeehhhhcc---CCCCCCh-----------------HHHHHHHhhhhcCCcEEEEEe-------ChHH-H
Q 026623          140 --YP-RTYDLIHANGVFSL---YENTCKP-----------------EDILLEMDRILRPEGAVIFRD-------EVDA-L  188 (235)
Q Consensus       140 --~p-~sFDlV~a~~vl~h---~~~~~~~-----------------~~~L~Em~RVLRPGG~lii~d-------~~~~-~  188 (235)
                        +. ..||-|.|.-=.++   +++..++                 ..+|.---|.|||||.++-|+       +..+ -
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~  309 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQ  309 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHH
Confidence              12 57888876322221   0100011                 267778889999999999995       2223 3


Q ss_pred             HHHHHHHhccCceeEee
Q 026623          189 NKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       189 ~~i~~~~~~~~W~~~~~  205 (235)
                      ..++++...+.|.....
T Consensus       310 ~~L~~~~~~~~lv~~~~  326 (375)
T KOG2198|consen  310 EALQKVGGAVELVDVSG  326 (375)
T ss_pred             HHHHHhcCcccceeecc
Confidence            45666677888876643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=87.31  E-value=0.6  Score=39.29  Aligned_cols=89  Identities=21%  Similarity=0.351  Sum_probs=46.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccc-cccCCCCCC--Cccceeeeh-
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHD-WCEGFSTYP--RTYDLIHAN-  150 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~-~~e~l~~~p--~sFDlV~a~-  150 (235)
                      +.|+|+.||.||-+.+++...   -.|+++|.. ..+..+..-    |.   +..++. +.+.++...  ..||+|+++ 
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            369999999999999998864   368999998 666654332    32   222222 222223222  238999963 


Q ss_pred             --h--------hhcc--CCCCCChHHHHHHHhhhhc
Q 026623          151 --G--------VFSL--YENTCKPEDILLEMDRILR  174 (235)
Q Consensus       151 --~--------vl~h--~~~~~~~~~~L~Em~RVLR  174 (235)
                        .        +|.-  .....++.+++..+.++-+
T Consensus        78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~  113 (163)
T PF09445_consen   78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITP  113 (163)
T ss_dssp             -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S
T ss_pred             CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCC
Confidence              1        2221  1122346677777666653

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=87.08  E-value=0.55  Score=44.53  Aligned_cols=42  Identities=19%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++||.++.++.+.... .+.....+.++.|.+||||.++++.
T Consensus       293 ~~s~~~~vL~D~~Dwm~-~~~~~~~~~~l~~~~~pgaRV~~Rs  334 (380)
T PF11899_consen  293 PGSFDRFVLSDHMDWMD-PEQLNEEWQELARTARPGARVLWRS  334 (380)
T ss_pred             CCCeeEEEecchhhhCC-HHHHHHHHHHHHHHhCCCCEEEEee
Confidence            69999999999998774 3667899999999999999999996

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=86.34  E-value=4.3  Score=36.80  Aligned_cols=89  Identities=11%  Similarity=-0.028  Sum_probs=53.4

Q ss_pred             CCCceEeeeccccc-hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC
Q 026623           80 RRYRNVMDMNAGLG-GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        80 ~~~r~VLD~GCG~G-~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      ....+||=.|||.- .++..+++..  ..+|+.++.+ +.++.+.+-|.-..+.  .+  ....+.||+++-..      
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~--~~--~~~~~~~d~~i~~~------  231 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGG--AY--DTPPEPLDAAILFA------  231 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceecc--cc--ccCcccceEEEECC------
Confidence            34678998997643 3445555432  1357777776 7778888877532221  01  11124688764211      


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                         .....+.+.-+.|||||.+++.-
T Consensus       232 ---~~~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       232 ---PAGGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             ---CcHHHHHHHHHhhCCCcEEEEEe
Confidence               11357888999999999998853

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=85.85  E-value=4.9  Score=38.27  Aligned_cols=112  Identities=12%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCC---------c----------------------ee-------EEeecCcc-cc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKS---------W----------------------VM-------NVVPTTAK-NT  117 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~---------~----------------------~~-------~V~~~D~s-~~  117 (235)
                      -++.....++|==||+|+|+..-+-...         |                      ..       .+.++|+. .+
T Consensus       187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~  266 (381)
T COG0116         187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH  266 (381)
T ss_pred             cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence            3666667899999999998543322110         0                      00       26699998 88


Q ss_pred             HHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhhc-cCCCCCChH----HHHHHHhhhhcCCcEEEEEeCh
Q 026623          118 LGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVFS-LYENTCKPE----DILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       118 L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~-h~~~~~~~~----~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ++.|+..    |+   |.........|+...+.+|+|+||-=-- .+.+...+.    .+..+|.|.++--+.+|++.+.
T Consensus       267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e  346 (381)
T COG0116         267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE  346 (381)
T ss_pred             HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence            8876553    54   3333433445553338999999853211 121222233    4556777888888889998876


Q ss_pred             HHH
Q 026623          186 DAL  188 (235)
Q Consensus       186 ~~~  188 (235)
                      ...
T Consensus       347 ~~~  349 (381)
T COG0116         347 DLL  349 (381)
T ss_pred             HHH
Confidence            644

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=85.03  E-value=1.2  Score=34.22  Aligned_cols=82  Identities=22%  Similarity=0.268  Sum_probs=54.6

Q ss_pred             ccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccccc----CC-CCCC-CccceeeehhhhccCCCCCChH
Q 026623           91 GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE----GF-STYP-RTYDLIHANGVFSLYENTCKPE  163 (235)
Q Consensus        91 G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e----~l-~~~p-~sFDlV~a~~vl~h~~~~~~~~  163 (235)
                      |.|.++..+++.-.  .+|+.+|.+ ..++.+.+-|....+....+    .+ ...+ +.+|+|+=.         -.-.
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~---------~g~~   69 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC---------VGSG   69 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES---------SSSH
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe---------cCcH
Confidence            56778777776432  578888888 78888888884322211111    11 1123 589998631         1226


Q ss_pred             HHHHHHhhhhcCCcEEEEEe
Q 026623          164 DILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       164 ~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..+.+.-.+|||||.+++--
T Consensus        70 ~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   70 DTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             HHHHHHHHHEEEEEEEEEES
T ss_pred             HHHHHHHHHhccCCEEEEEE
Confidence            89999999999999999984

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=83.59  E-value=6.8  Score=35.56  Aligned_cols=88  Identities=22%  Similarity=0.192  Sum_probs=52.3

Q ss_pred             CCceEeeecccc-chHHHHHhcC-CCceeEEeecCc---c-ccHHHHHHcCccccccccc-cCC--CCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTA---K-NTLGVIYERGLIGIYHDWC-EGF--STYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~---s-~~L~~~~~Rgl~~~~~~~~-e~l--~~~p~sFDlV~a~~  151 (235)
                      ...+||=+|||. |.++..+++. +.   .|+.++.   + ..++.+.+.|....  +.- +.+  ....+.||+|+-..
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~---~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~  246 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF---EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT  246 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc
Confidence            356888888864 4466666553 42   4666654   4 66677777665321  111 110  00124688876411


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                               .-...+.+..++|||||.+++.
T Consensus       247 ---------g~~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         247 ---------GVPPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             ---------CCHHHHHHHHHHccCCcEEEEE
Confidence                     1135788999999999999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=83.01  E-value=4.3  Score=36.01  Aligned_cols=91  Identities=18%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             CCCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-CCCCccceeeehhhhcc
Q 026623           80 RRYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-TYPRTYDLIHANGVFSL  155 (235)
Q Consensus        80 ~~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-~~p~sFDlV~a~~vl~h  155 (235)
                      ....+||-.||| .|..+..+++. +.   +|+.++.+ +.++.+.+.|....+....+.+. ...+.+|+++.. +   
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~-~---  233 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGF---ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVT-V---  233 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEEC-C---
Confidence            345688888886 66666666554 43   46666656 66777666663211111001110 012468888641 1   


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                           .-...+.++.|.|+++|.++..
T Consensus       234 -----~~~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         234 -----VSGAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             -----CcHHHHHHHHHhcccCCEEEEE
Confidence                 1135788999999999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=82.98  E-value=3.4  Score=38.21  Aligned_cols=90  Identities=21%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC-----C-C-CCCCccceeeehhhhcc
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG-----F-S-TYPRTYDLIHANGVFSL  155 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~-----l-~-~~p~sFDlV~a~~vl~h  155 (235)
                      +|+=+|||+=|+.+.+..+-.-...|+.+|.+ +.|+.|.+.+-.....+.-+.     . . +..+.||+++=...   
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G---  247 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG---  247 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC---
Confidence            89999999866554333321113568888998 899998885532221111110     0 1 11246998873211   


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                            ...++.++-+.+||||.+++-
T Consensus       248 ------~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         248 ------SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             ------CHHHHHHHHHHhcCCCEEEEE
Confidence                  356899999999999999987

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.84  E-value=5  Score=33.80  Aligned_cols=93  Identities=23%  Similarity=0.199  Sum_probs=55.1

Q ss_pred             CCCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC-----CCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-----STYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-----~~~p~sFDlV~a~~v  152 (235)
                      ....+||..|+|. |..++.++...  ..+|+.++.+ +..+.+.+.|....+...-..+     ....+.||+++.+. 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-  209 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-  209 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC-
Confidence            3467899999985 66666665532  1457777776 6666666655322111000000     01136799987521 


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                              .-...+..+.+.|+++|.++...
T Consensus       210 --------~~~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         210 --------GGPETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             --------CCHHHHHHHHHhcccCCEEEEEc
Confidence                    11256777889999999999764

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=82.43  E-value=3.9  Score=36.26  Aligned_cols=91  Identities=18%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             CCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC----CCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF----STYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l----~~~p~sFDlV~a~~vl  153 (235)
                      ...+||-.|+| .|..+..+++. +..  .++.++.+ +....+.+.|....+...-..+    ....+.+|+++...  
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~--  234 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT--  234 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC--
Confidence            45688999865 24455555543 321  25555555 6666666666422111100000    11236789987511  


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                             .-...+.++.|.|+|+|.++..
T Consensus       235 -------~~~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         235 -------GVPKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             -------CChHHHHHHHHHHhcCCEEEEE
Confidence                   1146889999999999999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=81.71  E-value=3  Score=40.00  Aligned_cols=97  Identities=16%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccc---------cccccccCCC---CCCCc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIG---------IYHDWCEGFS---TYPRT  143 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~---------~~~~~~e~l~---~~p~s  143 (235)
                      ..++||=+|-|.|--++.|.++|. ++.++-+|.. .|.+++..    |.+.+         .+.+  +++.   +-.+.
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d--DAf~wlr~a~~~  365 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND--DAFQWLRTAADM  365 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEec--cHHHHHHhhccc
Confidence            478999999999999999999874 5788989987 88887652    22211         1111  2222   12379


Q ss_pred             cceeeehhhhccCCCCCCh-------HHHHHHHhhhhcCCcEEEEEeCh
Q 026623          144 YDLIHANGVFSLYENTCKP-------EDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~-------~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ||.|+..     ++|..++       +.+-.-..|-|+++|.+++.-..
T Consensus       366 fD~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         366 FDVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             ccEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            9999862     2222222       35566677889999999999543

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=81.70  E-value=2.9  Score=38.85  Aligned_cols=100  Identities=18%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHH---HHHHcCc------------cccccccccCCCCCCCcc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLG---VIYERGL------------IGIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~---~~~~Rgl------------~~~~~~~~e~l~~~p~sF  144 (235)
                      .+.++||=+|-|-|++.+.....+ -+-|+.-+|+-.++.   ..+-+.+            +|.=...|+.+  ..++|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~--~~~~~  196 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL--KENPF  196 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh--ccCCc
Confidence            357899999999999988877663 345666555542222   2333322            11111112221  14999


Q ss_pred             ceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+...-=--- +-|.  .+....-+.|-|||||++++..
T Consensus       197 dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  197 DVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             eEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            999862111000 1111  1367788999999999999984

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=81.68  E-value=5.7  Score=35.43  Aligned_cols=91  Identities=19%  Similarity=0.235  Sum_probs=52.7

Q ss_pred             CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccccc---CCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE---GFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e---~l~~~p~sFDlV~a~~vl~  154 (235)
                      ...+||-.|||. |.++..+++. +.  ..++.++.+ +....+.+.|....+....+   .+....+.||+|+....  
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g--  240 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG--  240 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC--
Confidence            467889888765 5555556553 32  146666666 66665555554222211001   11112245898874211  


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                             -...+.++.+.|+++|.++.-
T Consensus       241 -------~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         241 -------APAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             -------CHHHHHHHHHHHhcCCEEEEE
Confidence                   135788999999999999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=80.87  E-value=6.4  Score=38.86  Aligned_cols=97  Identities=19%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CCCceEeeeccccchHHHHHhc--CCCceeEEeecCcc-ccHHHHHHcCcccccccccc----------CCC--------
Q 026623           80 RRYRNVMDMNAGLGGFAAALES--PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE----------GFS--------  138 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e----------~l~--------  138 (235)
                      ....+|+=+|||.=|+++....  .|   ..|+.+|.+ +.++.+.+-|......+-.+          .++        
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            4578999999999887664433  34   369999998 88888777664211011001          011        


Q ss_pred             --CCC--CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          139 --TYP--RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       139 --~~p--~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                        +.+  +.+|+|+.......   +..+.-+..|+-+.+||||.++.-
T Consensus       240 ~~~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEE
Confidence              011  46999987554421   112334469999999999998765

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=80.14  E-value=5.9  Score=31.70  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             CccceeeehhhhccCCCCCCh----HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceE
Q 026623          142 RTYDLIHANGVFSLYENTCKP----EDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKI  217 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~----~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~  217 (235)
                      ..||+|+-. .|+-   ..++    ..++.++.|+++|||.+..-....   .|++-+...-+.+....   |...+-..
T Consensus        49 ~~~Da~ylD-gFsP---~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~---~Vr~~L~~aGF~v~~~~---g~g~Kr~~  118 (124)
T PF05430_consen   49 ARFDAWYLD-GFSP---AKNPELWSEELFKKLARLSKPGGTLATYSSAG---AVRRALQQAGFEVEKVP---GFGRKREM  118 (124)
T ss_dssp             T-EEEEEE--SS-T---TTSGGGSSHHHHHHHHHHEEEEEEEEES--BH---HHHHHHHHCTEEEEEEE----STTSSEE
T ss_pred             ccCCEEEec-CCCC---cCCcccCCHHHHHHHHHHhCCCcEEEEeechH---HHHHHHHHcCCEEEEcC---CCCCcchh
Confidence            677777653 2441   2233    599999999999999988765554   45677888888887543   22356778


Q ss_pred             EEEEec
Q 026623          218 LIAVKQ  223 (235)
Q Consensus       218 l~~~k~  223 (235)
                      +++.|.
T Consensus       119 ~~a~~~  124 (124)
T PF05430_consen  119 LRAVKP  124 (124)
T ss_dssp             EEEEC-
T ss_pred             eEEEcC
Confidence            888774

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.74
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.73
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.73
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.7
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.7
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.7
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.7
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.69
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.69
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.69
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.69
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.69
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.68
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.67
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.67
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.67
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.67
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.66
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.66
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.66
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.66
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.66
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.65
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.65
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.65
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.65
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.64
3ocj_A	305	Putative exported protein; structural genomics, PS	99.64
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.64
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.64
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.64
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.64
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.64
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.64
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.64
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.63
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.63
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.63
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.63
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.62
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.62
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.62
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.61
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.61
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.61
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.61
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.61
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.61
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.61
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.61
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.6
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.6
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.59
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.59
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.59
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.59
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.59
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.59
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.58
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.58
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.58
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.58
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.58
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.57
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.57
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.57
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.56
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.55
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.54
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.54
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.53
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.53
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.53
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.53
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.53
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.53
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.52
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.52
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.52
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.51
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.51
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.5
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.5
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.49
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.48
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.48
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.47
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.47
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.46
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.46
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.46
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.45
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.44
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.44
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.44
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.43
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.42
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.42
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.42
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.42
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.42
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.41
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.41
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.41
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.41
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.41
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.4
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.4
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.4
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.4
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.39
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.38
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.38
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.38
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.37
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.37
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.37
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.37
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.37
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.36
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.36
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.36
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.35
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.35
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.35
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.34
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.33
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.33
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.33
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.33
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.32
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.32
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.32
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.32
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.31
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.31
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.31
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.31
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.3
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.3
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.3
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.3
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.3
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.29
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.29
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.29
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.29
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.29
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.28
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.28
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.28
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.28
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.27
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.27
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.27
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.27
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.26
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.26
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.26
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.26
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.25
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.25
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.24
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.24
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.23
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.23
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.23
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.22
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.22
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.22
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.21
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.21
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.21
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.2
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.2
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.2
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.19
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.19
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.18
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.18
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.17
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.17
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.17
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.17
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.16
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.15
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.15
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.14
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.13
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.12
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.12
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.11
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.11
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.1
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.1
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.1
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.1
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.09
2o07_A	304	Spermidine synthase; structural genomics, structur	99.09
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.08
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.07
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.06
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.06
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.06
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.06
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.05
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.04
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.04
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.03
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.01
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.01
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.0
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.99
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.98
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.97
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.97
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.95
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.95
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.94
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.94
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.91
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.9
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.9
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.87
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.86
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.86
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.86
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.85
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.85
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.85
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.85
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.82
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.81
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.8
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.79
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.77
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.75
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.71
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.67
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.63
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.61
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.49
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.35
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.35
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.35
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.34
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.34
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.31
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.27
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.26
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.23
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.23
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.22
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.18
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.14
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.12
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.11
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.11
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.07
3khk_A	544	Type I restriction-modification system methylation	97.98
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.9
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.89
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.88
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.87
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.86
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.84
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.78
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.78
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.72
3lkd_A	542	Type I restriction-modification system methyltrans	97.71
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.58
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.47
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.44
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.42
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.3
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.28
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.25
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.06
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.9
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.66
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.57
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.49
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.31
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.17
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	95.94
3ufb_A	530	Type I restriction-modification system methyltran	95.43
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.22
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.9
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.09
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.94
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	93.81
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.61
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.35
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	93.19
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.75
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.37
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.95
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.87
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	91.82
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.77
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	91.74
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	91.58
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.58
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.44
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	90.96
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	90.94
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	90.83
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.74
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	90.72
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	90.48
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	90.31
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	90.26
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.25
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	89.78
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	89.53
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	89.47
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.43
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	89.32
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.14
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	89.1
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	88.79
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	87.44
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.3
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	87.23
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	87.18
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	87.13
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	86.9
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.89
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	86.84
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	86.47
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	86.37
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	86.06
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	85.97
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	85.86
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.7
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	85.16
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	84.61
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	84.24
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	83.89
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	83.87
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	83.62
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	83.36
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	82.76
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	82.73
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	82.71
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	82.65
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	82.45
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	81.66
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	81.37
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	80.11

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.74  E-value=2.2e-18  Score=148.01  Aligned_cols=107  Identities=18%  Similarity=0.255  Sum_probs=86.0

Q ss_pred             HHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCc
Q 026623           71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRT  143 (235)
Q Consensus        71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~s  143 (235)
                      ..++..+...+..+|||+|||+|.++..|.+..   ..|+++|.+ .|++.+.++    |+  +.......+.+|+.+++
T Consensus        27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~  103 (260)
T 1vl5_A           27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER  103 (260)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC
Confidence            334444555567899999999999999998865   279999999 899987665    33  33445555678866699


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ||+|+++.+++|++   ++..+|.|+.|+|||||++++.+
T Consensus       104 fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          104 FHIVTCRIAAHHFP---NPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEhhhhHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence            99999999999996   77899999999999999999975

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.73  E-value=2.2e-18  Score=151.37  Aligned_cols=95  Identities=14%  Similarity=0.125  Sum_probs=81.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      ..+|||+|||+|.++..|++.+   .+|+++|.| .|++.+.++.-+...+..+|.+|+.+++||+|+|+.+|||+    
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~----  112 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF----  112 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC----
T ss_pred             CCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHh----
Confidence            4589999999999999999875   379999999 99987766554555667778899777999999999999775    


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEe
Q 026623          161 KPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.+.++.|+.|||||||.|++.+
T Consensus       113 ~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          113 DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCCCEEEEEE
Confidence            57899999999999999998874

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.73  E-value=1.9e-17  Score=138.04  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=85.1

Q ss_pred             HHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCCCCCcc
Q 026623           68 NAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        68 ~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~~p~sF  144 (235)
                      ..|..++..+...+..+|||+|||+|.++..|++.+   .+++++|.+ .++..+.++..  +..+....+.+++. ++|
T Consensus        32 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~f  107 (220)
T 3hnr_A           32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSI  107 (220)
T ss_dssp             TTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCC
T ss_pred             HHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCe
Confidence            334445544444456799999999999999999874   479999999 89998877732  33444445566644 999


Q ss_pred             ceeeehhhhccCCCCCChHH--HHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPED--ILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~--~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+|+.+|+|++   +...  +|.|+.|+|||||.+++.+
T Consensus       108 D~v~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          108 DTIVSTYAFHHLT---DDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             SEEEEESCGGGSC---HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEECcchhcCC---hHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9999999999996   3444  9999999999999999996

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.70  E-value=6.4e-17  Score=133.45  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=82.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..... +|||+|||+|.++..|++.+  ..+++++|.+ .++..+.++    |+   +..++...+.+++.+++||+|+
T Consensus        40 ~~~~~~-~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  116 (219)
T 3dlc_A           40 FGITAG-TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIV  116 (219)
T ss_dssp             HCCCEE-EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEE
T ss_pred             cCCCCC-EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEE
Confidence            443333 99999999999999998863  4689999999 899887766    33   3344555566776669999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++.+++|++   ++..+|.|+.|+|||||.+++.+
T Consensus       117 ~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          117 SRGSVFFWE---DVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECchHhhcc---CHHHHHHHHHHhCCCCCEEEEEe
Confidence            999999984   78999999999999999999985

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.70  E-value=3.1e-17  Score=136.70  Aligned_cols=145  Identities=16%  Similarity=0.104  Sum_probs=105.9

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFD  145 (235)
                      ++..++.....+|||+|||+|.++..|++...-...++++|.+ .++..+.++    |+  +.......+.+++.+++||
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  108 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVD  108 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEE
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCee
Confidence            3444444456799999999999999998752112479999999 888877665    32  3334444556775569999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------------HHHHHHHHHHhccCceeEeecCCCCCC
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------------DALNKVRKFAEGMRWDTKMMDHEDGPL  212 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------------~~~~~i~~~~~~~~W~~~~~~~~~~~~  212 (235)
                      +|+++.+|+|++   ++..+|.|+.|+|||||.+++.+..             .....+..+++...|++.......   
T Consensus       109 ~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---  182 (219)
T 3dh0_A          109 FIFMAFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG---  182 (219)
T ss_dssp             EEEEESCGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET---
T ss_pred             EEEeehhhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC---
Confidence            999999999985   6789999999999999999998621             124678888888889865332211   


Q ss_pred             CCceEEEEEec
Q 026623          213 MPEKILIAVKQ  223 (235)
Q Consensus       213 ~~e~~l~~~k~  223 (235)
                      ....+++++|.
T Consensus       183 ~~~~~~~~~k~  193 (219)
T 3dh0_A          183 KYCFGVYAMIV  193 (219)
T ss_dssp             TTEEEEEEECC
T ss_pred             CceEEEEEEec
Confidence            24567777775

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.70  E-value=1.4e-16  Score=132.12  Aligned_cols=139  Identities=18%  Similarity=0.186  Sum_probs=102.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC---CCCC-Cccceeeehh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF---STYP-RTYDLIHANG  151 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l---~~~p-~sFDlV~a~~  151 (235)
                      +......+|||+|||+|.++..|++.+   .+++++|.+ .++..+.+++.+.......+.+   ++.+ .+||+|+|+.
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             HHHTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             hhcCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECc
Confidence            333345799999999999999999885   379999999 9999998886544443333334   5455 5699999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH--------------------------------HHHHHHHHHhccC
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD--------------------------------ALNKVRKFAEGMR  199 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~--------------------------------~~~~i~~~~~~~~  199 (235)
                      +|+ .   .++..+|.++.|+|||||++++.+...                                ....+..+++.-.
T Consensus       125 ~l~-~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  200 (227)
T 3e8s_A          125 ALL-H---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG  200 (227)
T ss_dssp             CCC-S---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred             hhh-h---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence            998 3   377899999999999999999986310                                3567888888888


Q ss_pred             ceeEeecCCCCCC---CCceEEEEEe
Q 026623          200 WDTKMMDHEDGPL---MPEKILIAVK  222 (235)
Q Consensus       200 W~~~~~~~~~~~~---~~e~~l~~~k  222 (235)
                      +++........+.   ....+++++|
T Consensus       201 f~~~~~~~~~~~~~~~~~~~~~va~k  226 (227)
T 3e8s_A          201 LRLVSLQEPQHPQSAVPQSLLMVAER  226 (227)
T ss_dssp             EEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred             CeEEEEecCCCCCCCCceeEEEEeec
Confidence            9876433222111   2356777776

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=5.5e-17  Score=133.94  Aligned_cols=135  Identities=13%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT  159 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~  159 (235)
                      ..+|||+|||+|.++..|+..+   .+++++|.+ .++..+.++.. +..+....+.+++.+++||+|+++.+|+|++ .
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~  117 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG-P  117 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC-T
T ss_pred             CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC-H
Confidence            5689999999999999999875   369999999 99998888742 3334444456775569999999999999985 3


Q ss_pred             CChHHHHHHHhhhhcCCcEEEEEeCh----------------HHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          160 CKPEDILLEMDRILRPEGAVIFRDEV----------------DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRPGG~lii~d~~----------------~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      .++..+|.++.|+|||||.+++.+..                .....+..+++...|++.......+  .....|...|
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~  194 (203)
T 3h2b_A          118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA  194 (203)
T ss_dssp             TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence            57899999999999999999998621                1256788889999999875544433  3455555444

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.69  E-value=1.2e-16  Score=133.53  Aligned_cols=142  Identities=14%  Similarity=0.160  Sum_probs=100.9

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-----------ccccccccccCCCCCCCcccee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-----------LIGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-----------l~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      ....+|||+|||+|.++..|++.+. ..+++++|.+ .++..+.++-           -+..+....+.+++.+++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence            3467999999999999999998642 3579999999 8999877652           1223333334455445899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH----------------------HHHHH----HHHhccCce
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA----------------------LNKVR----KFAEGMRWD  201 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~----------------------~~~i~----~~~~~~~W~  201 (235)
                      +|+.+|+|+++ .++..+|.++.|+|||||++++..+.+.                      ...+.    .+++.-.++
T Consensus       107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~  185 (219)
T 3jwg_A          107 TVIEVIEHLDE-NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS  185 (219)
T ss_dssp             EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred             EEHHHHHhCCH-HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence            99999999952 2457999999999999998887754322                      12233    666777777


Q ss_pred             eEeec---CCCCCCCCceEEEEEec
Q 026623          202 TKMMD---HEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       202 ~~~~~---~~~~~~~~e~~l~~~k~  223 (235)
                      +....   ....-....++.|++|+
T Consensus       186 v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          186 VRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             EEEEecCCccccCCCCeEEEEEecc
Confidence            76442   22222257789999886

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.69  E-value=6e-17  Score=132.26  Aligned_cols=123  Identities=16%  Similarity=0.254  Sum_probs=92.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +...+..+|||+|||+|.++..|++.+   .+++++|.+ .++..+.++    ++  +...+...+.+++ +++||+|++
T Consensus        28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~  103 (199)
T 2xvm_A           28 VKVVKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILS  103 (199)
T ss_dssp             TTTSCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEE
T ss_pred             hhccCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEE
Confidence            443346799999999999999999874   379999999 888876654    33  2333444455665 899999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh--------------HHHHHHHHHHhccCceeEeec
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV--------------DALNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--------------~~~~~i~~~~~~~~W~~~~~~  206 (235)
                      +.+|+|++ ..++..+|.++.|+|||||.+++.+..              -..+++.+++..  |++..+.
T Consensus       104 ~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~  171 (199)
T 2xvm_A          104 TVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN  171 (199)
T ss_dssp             ESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred             cchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence            99999984 346889999999999999998876411              023466777776  8876543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.69  E-value=1.5e-16  Score=136.75  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehh-hhccCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANG-VFSLYEN  158 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~-vl~h~~~  158 (235)
                      ..+|||+|||+|.++..|.+.+   .+|+++|.+ .++..+.++.. +..+....+.+++ +++||+|+|+. +|+|+++
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred             CCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence            5799999999999999999875   379999999 99998887632 3334444455664 79999999998 9999965


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEE
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ..++..+|.++.|+|||||.++|.
T Consensus       127 ~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          127 QAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            456789999999999999999995

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.69  E-value=2.5e-16  Score=134.41  Aligned_cols=109  Identities=14%  Similarity=0.222  Sum_probs=88.0

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccc
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFD  145 (235)
                      +..++..+......+|||+|||+|.++..|++.+.  .+|+++|.+ .++..+.++.-   +.......+.+++.+++||
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  110 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN  110 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence            33344455555678999999999999999998763  279999999 99998887742   3334444566786569999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|+.+|+|+.   ++..+|.++.|+|||||.+++..
T Consensus       111 ~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          111 VVLSSLALHYIA---SFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEchhhhhhh---hHHHHHHHHHHHcCCCcEEEEEe
Confidence            999999999984   78999999999999999999984

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.69  E-value=5e-17  Score=136.41  Aligned_cols=96  Identities=21%  Similarity=0.292  Sum_probs=79.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCCCCCccceeeehhhhccCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      +..+|||+|||+|.++..|++.+.   +|+++|.+ .++..+.++..  +..++...+.+ +.+++||+|+|+++|+|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~  117 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID  117 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence            356899999999999999998753   69999999 99998887742  33344444555 3569999999999999996


Q ss_pred             CCCChHHHHHHHh-hhhcCCcEEEEEe
Q 026623          158 NTCKPEDILLEMD-RILRPEGAVIFRD  183 (235)
Q Consensus       158 ~~~~~~~~L~Em~-RVLRPGG~lii~d  183 (235)
                         ++..+|.|+. |+|||||++++.+
T Consensus       118 ---~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          118 ---DPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             ---SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---CHHHHHHHHHHHhcCCCCEEEEEc
Confidence               6789999999 9999999999987

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.68  E-value=7.6e-17  Score=134.28  Aligned_cols=103  Identities=18%  Similarity=0.274  Sum_probs=83.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccccccccCCCCCCCccceeeehh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +...+..+|||+|||+|.++..|++.+   .+|+++|.+ .++..+.++.-    +..++...+.++ .+++||+|+|+.
T Consensus        47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  122 (216)
T 3ofk_A           47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE  122 (216)
T ss_dssp             TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES
T ss_pred             cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc
Confidence            455567899999999999999998874   589999999 89998877632    334444445565 459999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|+++...+..+|.++.|+|||||.+++.+
T Consensus       123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99999754445688999999999999999976

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.68  E-value=4.4e-17  Score=136.66  Aligned_cols=119  Identities=8%  Similarity=0.058  Sum_probs=88.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------------------ccccccccccCCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------------------LIGIYHDWCEGFSTYP  141 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------------------l~~~~~~~~e~l~~~p  141 (235)
                      ...+|||+|||+|.++..|++++   .+|+++|.| .|++.+.++-                  -+..++.....+++.+
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            45799999999999999999875   379999999 9999888761                  1223444455666544


Q ss_pred             -CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEE-EEE-eCh-------H---HHHHHHHHHhccCceeEe
Q 026623          142 -RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAV-IFR-DEV-------D---ALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       142 -~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~l-ii~-d~~-------~---~~~~i~~~~~~~~W~~~~  204 (235)
                       ++||+|++..+|+|++ ..+...++.||.|+|||||.+ ++. +..       .   ..+++..++.. .|++..
T Consensus        99 ~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~  172 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK  172 (203)
T ss_dssp             HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred             CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence             7999999999999985 234568999999999999983 333 211       0   24567777776 777653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.68  E-value=1.1e-16  Score=136.48  Aligned_cols=102  Identities=19%  Similarity=0.281  Sum_probs=83.9

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      .+...+..+|||+|||+|.++..|++..   .+++++|.+ .++..+.++    |+  +.......+.+++.+++||+|+
T Consensus        16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~   92 (239)
T 1xxl_A           16 TAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIIT   92 (239)
T ss_dssp             HHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEE
T ss_pred             HhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEE
Confidence            3445557899999999999999998865   379999999 888876654    33  3344555677886669999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+.+++|++   ++..+|.|+.|+|||||++++.+
T Consensus        93 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           93 CRYAAHHFS---DVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999985   68999999999999999999986

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.67  E-value=7.8e-17  Score=137.29  Aligned_cols=102  Identities=12%  Similarity=0.191  Sum_probs=82.0

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCcccee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      .+...+..+|||+|||+|.++..|++..  ..+|+++|.+ .+++.+.++    |+   +...+...+.+++ +++||+|
T Consensus        31 ~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V  107 (256)
T 1nkv_A           31 VLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVA  107 (256)
T ss_dssp             HTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEE
T ss_pred             hcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEE
Confidence            3444456799999999999999998752  2379999999 899877654    43   3344555566775 8999999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|..+++|++   ++..+|.|+.|+|||||.+++.+
T Consensus       108 ~~~~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          108 ACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EECCChHhcC---CHHHHHHHHHHHcCCCeEEEEec
Confidence            9999999986   67899999999999999999986

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.67  E-value=6e-17  Score=137.58  Aligned_cols=129  Identities=13%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCcccee
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      ++..+...+..+|||+|||+|.++..|+..+  ...|+++|.+ .++..+.++.    .+..++...+.+++.+++||+|
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  162 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEE
Confidence            3444544457899999999999999988764  3469999999 8999887763    2333444455677556999999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH----------------HHHHHHHHHhccCceeEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD----------------ALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~----------------~~~~i~~~~~~~~W~~~~  204 (235)
                      +|+.+|+|+++ .++..+|.++.|+|||||++++.+...                ....+.++++.-.+++..
T Consensus       163 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  234 (254)
T 1xtp_A          163 VIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK  234 (254)
T ss_dssp             EEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred             EEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEE
Confidence            99999999953 357899999999999999999997310                135677777777777653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.67  E-value=5.9e-17  Score=138.00  Aligned_cols=108  Identities=18%  Similarity=0.173  Sum_probs=86.5

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCcccee
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      ++..+...+..+|||+|||+|.++..|++..  ...|+++|.+ .++..+.++.    .+...+...+.+++.+++||+|
T Consensus        47 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  124 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLI  124 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEE
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEE
Confidence            3444555567799999999999999998752  2479999999 9999988874    2333444455677656999999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++.+|+|++ ..++..+|.|+.|+|||||.+++.+
T Consensus       125 ~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          125 YSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999999983 2378899999999999999999996

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.67  E-value=5.5e-17  Score=142.47  Aligned_cols=100  Identities=11%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|.++..|++. +.-...|+++|.| .||+.+.++    ++   +..++...+.+|+  ..||+|+++.
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~  147 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF  147 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeee
Confidence            4679999999999999998764 1123479999999 999988775    33   2233443444552  5799999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|++. .+...+|.|++|+|||||.|+++|
T Consensus       148 ~l~~~~~-~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          148 TLQFLEP-SERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeecCc-hhHhHHHHHHHHHcCCCcEEEEEe
Confidence            9999852 345689999999999999999996

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.66  E-value=5.8e-16  Score=130.13  Aligned_cols=98  Identities=16%  Similarity=0.222  Sum_probs=78.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehh-hh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANG-VF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~-vl  153 (235)
                      +..+|||+|||+|.++..|.+.+   .+++++|.+ .++..+.++    ++ +..+....+.++ ++++||+|+++. +|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~l  112 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTTGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-ccCCceEEEEcCccc
Confidence            45799999999999999998875   369999999 899887665    21 233344445566 348999999998 99


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+++..++..+|.++.|+|||||.+++.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99965457889999999999999999984

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.66  E-value=2.2e-16  Score=138.00  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=82.6

Q ss_pred             CCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      ...+..+|||+|||+|.++..|++. +   .+|+++|.+ .++..+.++    |+   +...+...+.+|+.+++||+|+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  155 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW  155 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEE
Confidence            4445679999999999999999875 4   379999999 888877664    33   3344555566786669999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +..+++|++   ++..+|.|+.|+|||||.+++.+
T Consensus       156 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          156 SQDAFLHSP---DKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhhcC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence            999999996   57999999999999999999996

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.66  E-value=6.6e-16  Score=124.05  Aligned_cols=138  Identities=15%  Similarity=0.085  Sum_probs=100.2

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ++..+..+|||+|||+|.++..|.+..   .+++++|.+ .+++.+.++.- +.....   .+++.+++||+|+++.+++
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~---d~~~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSD---PKEIPDNSVDFILFANSFH   86 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESS---GGGSCTTCEEEEEEESCST
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeC---CCCCCCCceEEEEEccchh
Confidence            334456799999999999999999875   389999999 89998887721 222222   2565569999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-------------HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEE
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDEVD-------------ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAV  221 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-------------~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~  221 (235)
                      |++   ++..+|.|+.|+|||||.+++.+...             ....+.++++  .|++...... +  ...-.++++
T Consensus        87 ~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-~--~~~~~l~~~  158 (170)
T 3i9f_A           87 DMD---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-T--PYHFGLVLK  158 (170)
T ss_dssp             TCS---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-S--TTEEEEEEE
T ss_pred             ccc---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-C--CceEEEEEe
Confidence            985   68899999999999999999996211             1456677776  7776533222 1  245677776


Q ss_pred             eccccCC
Q 026623          222 KQYWVGS  228 (235)
Q Consensus       222 k~~w~~~  228 (235)
                      |+-=++.
T Consensus       159 ~~~~~~~  165 (170)
T 3i9f_A          159 RKTSEGH  165 (170)
T ss_dssp             ECCCCSC
T ss_pred             cCCCCcc
Confidence            6544443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.66  E-value=4.1e-16  Score=129.42  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=79.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-ccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-LIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      +..+|||+|||+|.++..|   +.  .+++++|.+ .++..+.++. -+..++...+.+++.+++||+|+++.+++|++ 
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-  109 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE-  109 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred             CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence            4679999999999999888   21  269999999 8999888773 23334444566775568999999999999985 


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                        ++..+|.|+.|+|||||.+++.+.
T Consensus       110 --~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A          110 --DVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --CHHHHHHHHHHHcCCCCEEEEEec
Confidence              789999999999999999999963

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=1.6e-16  Score=137.39  Aligned_cols=100  Identities=17%  Similarity=0.287  Sum_probs=83.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhcc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      +...+..+|||+|||+|.++..|++.+   .+|+++|.| .++..+.++..+...+..++.+++.+++||+|+|..+++|
T Consensus        30 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  106 (261)
T 3ege_A           30 LNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHH  106 (261)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGG
T ss_pred             hCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhh
Confidence            444456899999999999999999854   479999999 8888766665444556666778866699999999999999


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++   ++..+|.|+.|+|| ||++++.+
T Consensus       107 ~~---~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          107 FS---HLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             CS---SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             cc---CHHHHHHHHHHHhC-CcEEEEEE
Confidence            85   78999999999999 99888875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.66  E-value=2.4e-16  Score=134.22  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=81.0

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-----ccccccccccCCCCCCCccceeeehhhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-----LIGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-----l~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .+..+|||+|||+|.++..|++.+   .+|+++|.+ .++..+.++-     .+...+...+.+++.+++||+|+++.+|
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            346799999999999999999874   479999999 9999887762     1333444556677556999999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|++   ++..+|.|+.|+|||||.+++.
T Consensus       115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          115 HLVP---DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence            9986   6789999999999999999987

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.65  E-value=7e-17  Score=148.51  Aligned_cols=140  Identities=12%  Similarity=0.151  Sum_probs=107.1

Q ss_pred             cchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc----c
Q 026623           58 EDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY----H  131 (235)
Q Consensus        58 ~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~----~  131 (235)
                      ..+..|......+.. ++..+...+..+|||+|||+|.++..|.+.+.   +|+++|.| ++++.+.++|+....    .
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~  159 (416)
T 4e2x_A           83 SGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEK  159 (416)
T ss_dssp             GGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeech
Confidence            455667777766444 44555555677999999999999999998753   79999999 999999988763322    2


Q ss_pred             ccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH--------------------HHHHH
Q 026623          132 DWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD--------------------ALNKV  191 (235)
Q Consensus       132 ~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~--------------------~~~~i  191 (235)
                      +..+.+++.+++||+|+++++|+|++   ++..+|.|+.|+|||||++++.+...                    ....+
T Consensus       160 ~~~~~l~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  236 (416)
T 4e2x_A          160 ATADDVRRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSV  236 (416)
T ss_dssp             HHHHHHHHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHH
T ss_pred             hhHhhcccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHH
Confidence            23344554459999999999999996   78999999999999999999985310                    12467


Q ss_pred             HHHHhccCceeE
Q 026623          192 RKFAEGMRWDTK  203 (235)
Q Consensus       192 ~~~~~~~~W~~~  203 (235)
                      +.++++-.+++.
T Consensus       237 ~~ll~~aGf~~~  248 (416)
T 4e2x_A          237 QGMAQRCGFELV  248 (416)
T ss_dssp             HHHHHHTTEEEE
T ss_pred             HHHHHHcCCEEE
Confidence            777887778765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.65  E-value=2e-16  Score=136.24  Aligned_cols=106  Identities=24%  Similarity=0.321  Sum_probs=84.7

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCcc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sF  144 (235)
                      ++..++..+..+|||+|||+|.++..|++..  ..+|+++|.+ .++..+.++    |+   +.......+.+|+.+++|
T Consensus        53 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  130 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF  130 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence            4444554557899999999999999998742  2479999999 888877665    43   333444456677656999


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|++..+|+|++   +...+|.|+.|+|||||.+++.+
T Consensus       131 D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          131 DAVWALESLHHMP---DRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEEEEESCTTTSS---CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cEEEEechhhhCC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence            9999999999986   67899999999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.65  E-value=3.4e-16  Score=136.20  Aligned_cols=105  Identities=18%  Similarity=0.257  Sum_probs=84.2

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCC-CCCCc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFS-TYPRT  143 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~-~~p~s  143 (235)
                      ++..+... ..+|||+|||+|.++..|++.+   ..|+++|.+ .++..+.++    |+   +..++...+.++ +.+++
T Consensus        61 ~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  136 (285)
T 4htf_A           61 VLAEMGPQ-KLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETP  136 (285)
T ss_dssp             HHHHTCSS-CCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred             HHHhcCCC-CCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCC
Confidence            44444443 5699999999999999999874   479999999 899987765    33   233444455666 45699


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ||+|+|+.+|+|++   ++..+|.|+.|+|||||.+++.+.
T Consensus       137 fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          137 VDLILFHAVLEWVA---DPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ceEEEECchhhccc---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99999999999996   678999999999999999999863

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.65  E-value=2.9e-16  Score=136.48  Aligned_cols=101  Identities=13%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-ccccccccccCCCCCCCccceeeehhhh
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-LIGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .+...+..+|||+|||+|.++..|++.+   ..|+++|.+ .|+..+.++. -+.......+.+++ +++||+|+++.+|
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l  127 (279)
T 3ccf_A           52 LLNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAML  127 (279)
T ss_dssp             HHCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCG
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchh
Confidence            3444456799999999999999998843   479999999 9999887763 23334444566774 7999999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|++   ++..+|.|+.|+|||||++++..
T Consensus       128 ~~~~---d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          128 HWVK---EPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhCc---CHHHHHHHHHHhcCCCcEEEEEe
Confidence            9986   78899999999999999999985

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.64  E-value=1.7e-16  Score=134.84  Aligned_cols=96  Identities=9%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC--CCCCCccceeeehhhhccCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF--STYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l--~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ..+|||+|||+|.++..|++.+.   +|+++|.+ .++..+.++  +..+....+.+  ++.+++||+|+|+.+|+|++ 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~-  115 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD-  115 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-
T ss_pred             CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC-
Confidence            57999999999999999988653   58999999 999988877  33332222332  54569999999999999995 


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..++..+|.|+.|+|||||++++..
T Consensus       116 ~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          116 PERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             GGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             cHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            3467899999999999999999986

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.64  E-value=5.2e-16  Score=137.12  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=101.4

Q ss_pred             CCceEeeeccccchHHHHHh--cCCCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALE--SPKSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~--~~~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+|||+|||+|.++..|+  ..+  ..+|+++|.+ .++..+.++.    +   +..++..++.+++ +++||+|+++
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~  194 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACP--GVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-REGYDLLTSN  194 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCT--TCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-CSCEEEEECC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCC--CCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-cCCeEEEEEC
Confidence            46789999999999999985  333  3579999999 8998877652    2   3344555566774 4999999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh---------------------------------------HHHHHH
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV---------------------------------------DALNKV  191 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~---------------------------------------~~~~~i  191 (235)
                      .+++|+++......+|.|+.|+|||||.+++.+..                                       .....+
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT  274 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence            99999875433345899999999999999998711                                       125667


Q ss_pred             HHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          192 RKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       192 ~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      .++++.-.+++.......  ...-..++++|+
T Consensus       275 ~~~l~~aGF~~v~~~~~~--~~~~~~v~a~Kp  304 (305)
T 3ocj_A          275 RAQLEEAGFTDLRFEDDR--ARLFPTVIARKP  304 (305)
T ss_dssp             HHHHHHTTCEEEEEECCT--TSSSCEEEEECC
T ss_pred             HHHHHHCCCEEEEEEccc--CceeeEEEEecC
Confidence            788888888876443322  234467888874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.64  E-value=5.5e-16  Score=133.73  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      .+..+|||+|||+|.++..|++.+  ...|+++|.+ .++..+.++    |+   +.......+.+++.+++||+|+|+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~  122 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG  122 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence            346799999999999999999874  3479999999 888877665    33   3344555567775569999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|+    ++..+|.++.|+|||||++++.+
T Consensus       123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          123 AIYNI----GFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             CGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             Cceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence            99987    57899999999999999999986

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.64  E-value=4.9e-17  Score=141.63  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=79.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c------cccccccccCCC---CCCCccce
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L------IGIYHDWCEGFS---TYPRTYDL  146 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l------~~~~~~~~e~l~---~~p~sFDl  146 (235)
                      +..+|||+|||+|.++..|++.+.   +|+++|.| .++..+.++.    .      +.........++   +.+++||+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence            467999999999999999998863   79999999 9999886642    1      111222223344   45699999


Q ss_pred             eeeh-hhhccCCC----CCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          147 IHAN-GVFSLYEN----TCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       147 V~a~-~vl~h~~~----~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      |+|. .+|+|+++    ..++..+|.++.|+|||||++++....
T Consensus       134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9998 89999974    234889999999999999999998743

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.64  E-value=2.7e-16  Score=138.15  Aligned_cols=101  Identities=10%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             CCCceEeeeccccchHHHH----HhcC-CCceeEEeecCcc-ccHHHHHHc-----Ccccc----ccccccCCC------
Q 026623           80 RRYRNVMDMNAGLGGFAAA----LESP-KSWVMNVVPTTAK-NTLGVIYER-----GLIGI----YHDWCEGFS------  138 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~----L~~~-~~~~~~V~~~D~s-~~L~~~~~R-----gl~~~----~~~~~e~l~------  138 (235)
                      .+..+|||+|||+|.++..    +... +.....++++|.| +|++.+.++     ++...    .....+.++      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            3467999999999976543    3332 2222245999999 999987765     32111    111122332      


Q ss_pred             CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          139 TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       139 ~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.+++||+|+|+.+|+|++   ++..+|.||.|+|||||++++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            3459999999999999996   78999999999999999999974

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.64  E-value=1e-15  Score=133.15  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=82.7

Q ss_pred             HHHhhhhCCCCCceEeeeccccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCC
Q 026623           71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYP  141 (235)
Q Consensus        71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p  141 (235)
                      ..++..++..+..+|||+|||+|.++..|++ .+   .+|+++|.+ +++..+.++    |+   +...+...+.+|   
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---  127 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---  127 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence            3345555555577999999999999999984 34   279999999 899887765    33   223333334444   


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++||+|++..+|+|+++ .++..+|.|+.|+|||||.+++.+
T Consensus       128 ~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            89999999999999953 478999999999999999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.64  E-value=8e-16  Score=132.62  Aligned_cols=100  Identities=21%  Similarity=0.330  Sum_probs=81.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT  159 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~  159 (235)
                      +..+|||+|||+|.++..|.+.+   .+++++|.+ .+++.+.++..........+.+++.+++||+|++..++.|+.. 
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~-  129 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE-  129 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccc-
Confidence            46799999999999999999875   379999999 9999988875422344445667755699999999887777632 


Q ss_pred             CChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          160 CKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                       ++..+|.|+.|+|||||.+++....
T Consensus       130 -~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          130 -NKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             5899999999999999999998643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.64  E-value=2.4e-16  Score=131.76  Aligned_cols=105  Identities=13%  Similarity=0.157  Sum_probs=79.8

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-------cccccccccCCCCCCCcccee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-------IGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-------~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      ....+|||+|||+|.++..|++.+. ..+++++|.+ .++..+.++    |+       +..+....+.++..+++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            3467999999999999999988642 2479999999 899988765    11       222333233334334899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD  186 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~  186 (235)
                      +|+.+|+|+++ .++..+|.++.|+|||||++++.++.+
T Consensus       107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~  144 (217)
T 3jwh_A          107 TVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIE  144 (217)
T ss_dssp             EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred             eeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence            99999999942 345899999999999999999887653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.64  E-value=5.7e-16  Score=130.43  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=84.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccceeeehhh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      +...+..+|||+|||+|.++..|.+.+.  .+++++|.+ .++..+.++..   +...+...+.+++.+++||+|+++.+
T Consensus        39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             SCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             ccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecc
Confidence            4444567999999999999999998752  279999999 99998887752   23334444557755699999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      |+|++   ++..+|.++.|+|||||.+++.+..
T Consensus       117 l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          117 LHYVE---DVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             GGGCS---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccc---hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            99985   6889999999999999999998643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.64  E-value=3.7e-16  Score=131.77  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccceeeehhhhccC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                      +..+|||+|||+|.++..|++.+   .+|+++|.+ .++..+.++..   +..+....+.+++.+++||+|++..+|+|+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            35699999999999999999875   379999999 89999888742   233444456677556999999999999998


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeChH----------------------HHHHHHHHHhccCceeE
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDEVD----------------------ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~~----------------------~~~~i~~~~~~~~W~~~  203 (235)
                      +   ++..+|.++.|+|||||.+++.+...                      ....+..+++...+++.
T Consensus       130 ~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  195 (242)
T 3l8d_A          130 E---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV  195 (242)
T ss_dssp             S---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred             c---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence            5   77899999999999999999986210                      12356777777777764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.63  E-value=7.4e-16  Score=135.56  Aligned_cols=108  Identities=14%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTY  140 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~  140 (235)
                      +..++..++..+..+|||+|||+|.++..|++. +   .+|+++|.+ .++..+.++    |+.   ...+...+.+   
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---
Confidence            333455555556789999999999999999886 5   479999999 899887765    432   2333333333   


Q ss_pred             CCccceeeehhhhccCCCC------CChHHHHHHHhhhhcCCcEEEEEe
Q 026623          141 PRTYDLIHANGVFSLYENT------CKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~~~~------~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++||+|++..+|+|+++.      .+...+|.++.|+|||||.+++.+
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            7999999999999999653      346799999999999999999986

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.63  E-value=2.9e-16  Score=129.96  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=79.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc--ccccccccCCCCCCCccceeeehhhhccCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI--GIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~--~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      ...+|||+|||+|.++..|++.+   .+++++|.+ .++..+.+.|+.  ..++...+.+ +.+++||+|+|+.+|+|++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~  121 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP  121 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence            35699999999999999998874   379999999 999998887642  2333333444 3459999999999999996


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      + ..+..+|.++.|+|||||.+++.+.
T Consensus       122 ~-~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          122 D-DRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             H-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            3 2358999999999999999999964

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.63  E-value=3.1e-16  Score=130.37  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=92.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      ..+|||+|||+|.++..|++.+   .+++++|.+ .++..+.++--+.......+.++ .+++||+|+|+.+|+|++ ..
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-~~  118 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP-RD  118 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSC-HH
T ss_pred             CCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcC-HH
Confidence            5699999999999999999875   379999999 89998887732233333345567 569999999999999985 34


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEeCh---------------HHHHHHHHHHhccC-ceeE
Q 026623          161 KPEDILLEMDRILRPEGAVIFRDEV---------------DALNKVRKFAEGMR-WDTK  203 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d~~---------------~~~~~i~~~~~~~~-W~~~  203 (235)
                      ++..+|.|+.|+|||||++++....               .....+..+++.-. |++.
T Consensus       119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~  177 (211)
T 3e23_A          119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV  177 (211)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence            6789999999999999999998421               12456777877777 7765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=7.3e-16  Score=131.23  Aligned_cols=106  Identities=17%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeeh
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ++..+......+|||+|||+|.++..|.+... ...++++|.+ .++..+.++.- +...+...+.++ .+++||+|+++
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  102 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYAN  102 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEE
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEe
Confidence            45555555567999999999999999987510 1369999999 99998887732 333444456666 56999999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+|+|++   ++..+|.|+.|+|||||++++.+
T Consensus       103 ~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          103 AVFQWVP---DHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             SCGGGST---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CchhhCC---CHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999985   68999999999999999999986

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.62  E-value=1.4e-15  Score=123.99  Aligned_cols=139  Identities=14%  Similarity=0.104  Sum_probs=90.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC-CCCCccceeeehh-
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS-TYPRTYDLIHANG-  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~-~~p~sFDlV~a~~-  151 (235)
                      +..+|||+|||+|.++..|++.+   ..|+++|.+ .+++.+.++    |+  +..+++..+.++ +.+++||+|+++. 
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~   98 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG   98 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence            35799999999999999999873   479999999 899887665    43  333444455544 2358999999873 


Q ss_pred             hhccC-----CCCCChHHHHHHHhhhhcCCcEEEEEeCh------HHHHHHHHHHhccC---ceeEeecCCCCCCCCceE
Q 026623          152 VFSLY-----ENTCKPEDILLEMDRILRPEGAVIFRDEV------DALNKVRKFAEGMR---WDTKMMDHEDGPLMPEKI  217 (235)
Q Consensus       152 vl~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~d~~------~~~~~i~~~~~~~~---W~~~~~~~~~~~~~~e~~  217 (235)
                      .+++-     ....+...+|.|+.|+|||||.+++....      +....+.++...+.   |.+..+..-+.......+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  178 (185)
T 3mti_A           99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL  178 (185)
T ss_dssp             -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEE
T ss_pred             CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeE
Confidence            33220     01123458899999999999999998532      22344555555444   887655544433344455


Q ss_pred             EEEEe
Q 026623          218 LIAVK  222 (235)
Q Consensus       218 l~~~k  222 (235)
                      ++..|
T Consensus       179 ~~i~~  183 (185)
T 3mti_A          179 VMLEK  183 (185)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.62  E-value=5.6e-16  Score=133.82  Aligned_cols=100  Identities=16%  Similarity=0.295  Sum_probs=81.2

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      .+..+|||+|||+|.++..|.+... ...++++|.+ .++..+.++    |+  +.......+.+++.+++||+|+++.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            3467999999999999999987521 2479999999 888877665    33  33344445567766699999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|++   ++..+|.++.|+|||||++++.+
T Consensus       115 l~~~~---~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          115 LEHLQ---SPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             GGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            99986   67899999999999999999985

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.62  E-value=5.9e-16  Score=130.07  Aligned_cols=117  Identities=10%  Similarity=0.109  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCC
Q 026623           62 LWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFST  139 (235)
Q Consensus        62 ~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~  139 (235)
                      .|......+...+.... .+..+|||+|||+|.++..|.+.+.   +++++|.+ .++..+.++.- +..++...+.+++
T Consensus        22 ~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~   97 (239)
T 3bxo_A           22 DYAAEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL   97 (239)
T ss_dssp             CHHHHHHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC
T ss_pred             hHHHHHHHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc
Confidence            44444444444443222 3457999999999999999987642   79999999 99998877631 3333444455664


Q ss_pred             CCCccceeee-hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          140 YPRTYDLIHA-NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       140 ~p~sFDlV~a-~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                       +++||+|+| ..+|+|+++..++..+|.++.|+|||||.+++.+
T Consensus        98 -~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           98 -GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             -CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence             789999996 4599998654567899999999999999999985

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.61  E-value=7.4e-16  Score=131.27  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=80.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      +..+|||+|||+|.++..|++...  ..|+++|.+ .++..+.++    |+   +..++...+.+|+.+++||+|+|+.+
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence            456999999999999999988642  279999999 888876665    43   33445555677866699999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++|+    ++..+|.++.|+|||||++++.+
T Consensus       124 l~~~----~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          124 IYNI----GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             Hhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence            9987    57899999999999999999996

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.61  E-value=5.6e-15  Score=124.87  Aligned_cols=118  Identities=16%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.++..|+..+   ..|+++|.+ .++..+.++.    .   +..+....+.++ .+++||+|+++.+|
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l  142 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFF  142 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESST
T ss_pred             CCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhh
Confidence            3599999999999999998754   479999999 8998877763    1   223333334444 34799999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-----------HHHHHHHHHhccCceeEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-----------ALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-----------~~~~i~~~~~~~~W~~~~  204 (235)
                      +|++ ..+...+|.++.|+|||||++++.+...           ....+..+++.-.|++..
T Consensus       143 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          143 CAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             TTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred             hcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence            9985 3578899999999999999999975211           246788888888898763

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.61  E-value=6.2e-15  Score=122.78  Aligned_cols=122  Identities=12%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      +..+|||+|||+|.++..|.      .+++++|.+..        .+.......+.+++.+++||+|+++.+||+    .
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~----~  128 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG----T  128 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCCS----S
T ss_pred             CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhccc----c
Confidence            45789999999999998884      25899999843        122333344557755699999999999963    3


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEeChH---HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          161 KPEDILLEMDRILRPEGAVIFRDEVD---ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d~~~---~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      ++..+|.|+.|+|||||.+++.+...   ....+..+++...+++...+...   ..-.+++++|.
T Consensus       129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---~~~~~~~~~k~  191 (215)
T 2zfu_A          129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTN---SHFFLFDFQKT  191 (215)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCS---TTCEEEEEEEC
T ss_pred             CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCC---CeEEEEEEEec
Confidence            78999999999999999999997543   35677888888888876543332   23467888886

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.61  E-value=1.5e-15  Score=132.17  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=89.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ...+|||+|||+|.++..|+..+   .+|+++|.+ .++..+.++    |+ +..+....+.+++ +++||+|+++.+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~  195 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFM  195 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchh
Confidence            46799999999999999999885   379999999 888876654    33 2233333445554 79999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-----------H---HHHHHHHHHhccCceeEeec
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDEV-----------D---ALNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-----------~---~~~~i~~~~~~~~W~~~~~~  206 (235)
                      |+. ..+...+|.++.|+|||||.+++....           .   ....+..+...  |++..+.
T Consensus       196 ~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~  258 (286)
T 3m70_A          196 FLN-RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN  258 (286)
T ss_dssp             GSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred             hCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence            984 346789999999999999998776310           0   13456666665  8876553

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.61  E-value=6.9e-16  Score=128.80  Aligned_cols=100  Identities=15%  Similarity=0.251  Sum_probs=80.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-------cccccccccCCCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-------IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-------~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..+|||+|||+|.++..|+..+   .+|+++|.+ .++..+.++    ++       +.......+.+++.+++||+|+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            35799999999999999999874   379999999 899888774    22       2333444556775569999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++.+++|+++......+|.++.|+|||||.+++.+
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            99999999743333499999999999999999986

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.61  E-value=1.2e-15  Score=129.80  Aligned_cols=122  Identities=19%  Similarity=0.213  Sum_probs=93.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..|+...  ...|+++|.+ .++..+.++.-      +..+....+.+++.+++||+|+++.+|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            46799999999999999998875  3479999999 89998877632      223344445567555899999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH---------------HHHHHHHHHhccCceeEee
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEVD---------------ALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---------------~~~~i~~~~~~~~W~~~~~  205 (235)
                      +|+++ ..+..+|.++.|+|||||.+++.+...               ....+.++++...+++...
T Consensus       157 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          157 GHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            99863 235699999999999999999976310               2567778888878876643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.61  E-value=3.2e-15  Score=122.92  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=99.5

Q ss_pred             CCceEeeeccccchHHHHHhcC--CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCC-CCCCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFS-TYPRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~-~~p~sFDlV~a  149 (235)
                      +..+|||+|||+|.++..|++.  +  ...|+++|.+ .++..+.++    |+   +..++...+.++ +.+++||+|++
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGE--NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCT--TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            3569999999999999998875  2  2379999999 888877665    33   333444445555 45599999999


Q ss_pred             hhhhcc------CCCCCChHHHHHHHhhhhcCCcEEEEEeCh------HHHHHHHHHHhccC---ceeEeecCCCCCCCC
Q 026623          150 NGVFSL------YENTCKPEDILLEMDRILRPEGAVIFRDEV------DALNKVRKFAEGMR---WDTKMMDHEDGPLMP  214 (235)
Q Consensus       150 ~~vl~h------~~~~~~~~~~L~Em~RVLRPGG~lii~d~~------~~~~~i~~~~~~~~---W~~~~~~~~~~~~~~  214 (235)
                      +..+..      .....+...++.++.|+|||||.+++.+..      +....+.++.+.+.   |.+..+...+.....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~p  179 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCP  179 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCC
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCC
Confidence            876511      111113457999999999999999998521      23445566665554   888877666665567


Q ss_pred             ceEEEEEecc
Q 026623          215 EKILIAVKQY  224 (235)
Q Consensus       215 e~~l~~~k~~  224 (235)
                      ..+++.+|..
T Consensus       180 p~~~~~~~~~  189 (197)
T 3eey_A          180 PILVCIEKIS  189 (197)
T ss_dssp             CEEEEEEECC
T ss_pred             CeEEEEEEcc
Confidence            7788888764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=125.87  Aligned_cols=136  Identities=12%  Similarity=0.126  Sum_probs=94.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceeeehhhhcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ...+|||+|||+|.++..|++.+.  .+++++|.+ .++..+.++.    -+.......+.+++.+++||+|+++.+|+|
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence            357999999999999999988753  279999999 8888887763    223334444556655689999999999987


Q ss_pred             CCC------------CCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHH--HhccCceeEeecCCCCCCCCceEEEE
Q 026623          156 YEN------------TCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKF--AEGMRWDTKMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       156 ~~~------------~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~--~~~~~W~~~~~~~~~~~~~~e~~l~~  220 (235)
                      +..            ..++..+|.|+.|+|||||.+++.+... ...  ..+  .....|........++.  .-.+.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  195 (215)
T 2pxx_A          120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFR--TRHYAQAYYGWSLRHATYGSGF--HFHLYLM  195 (215)
T ss_dssp             HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHH--HHHHCCGGGCEEEEEEEESGGG--CEEEEEE
T ss_pred             hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHH--HHHHhccccCcEEEEEEecCcc--eEEEEEE
Confidence            631            1245799999999999999999998643 221  223  33446876543332221  2335556


Q ss_pred             Ee
Q 026623          221 VK  222 (235)
Q Consensus       221 ~k  222 (235)
                      +|
T Consensus       196 ~~  197 (215)
T 2pxx_A          196 HK  197 (215)
T ss_dssp             EE
T ss_pred             Ee
Confidence            55

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.60  E-value=5.6e-16  Score=138.69  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=75.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c------------cccccccc--cCC--CCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L------------IGIYHDWC--EGF--STY  140 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l------------~~~~~~~~--e~l--~~~  140 (235)
                      ..+|||+|||+|+.+..+...+.  .+|+++|+| .|++.|.+|-    +            ...+++.+  +.|  ++.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            57899999999986666655442  479999999 9999888762    1            01111111  223  223


Q ss_pred             CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +++||+|.|..+|||.-+..+...+|.|+.|+|||||+|+++...
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            489999999999987644446789999999999999999998754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.60  E-value=1.8e-15  Score=127.40  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceeeehhhhc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      .+..+|||+|||+|.++..|++... ..+++++|.+ .+++.+.++-    -+..+....+.+++. ++||+|+++.+|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~  120 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH  120 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence            3467999999999999999987521 2479999999 8999887762    233344444556633 9999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+++ .+...+|.|+.|+|||||.+++.+
T Consensus       121 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          121 HLED-EDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9852 223469999999999999999987

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.59  E-value=4e-15  Score=131.60  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             HHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCC
Q 026623           71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYP  141 (235)
Q Consensus        71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p  141 (235)
                      ..++..++..+..+|||+|||+|.++..|++. +   ..|+++|.+ .++..+.++    |+   +.......+.+   |
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~  153 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---A  153 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---C
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---C
Confidence            33455555556779999999999999999875 4   379999999 899887766    43   22333333444   4


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++||+|++..+|+|++. .++..+|.|+.|+|||||.+++.+
T Consensus       154 ~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            89999999999999843 478999999999999999999986

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.59  E-value=2.4e-15  Score=133.22  Aligned_cols=105  Identities=13%  Similarity=0.041  Sum_probs=83.8

Q ss_pred             HhhhhC-CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCc
Q 026623           73 MNSLIG-TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRT  143 (235)
Q Consensus        73 ~l~~l~-~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~s  143 (235)
                      ++..+. ..+..+|||+|||+|.++..|++..  ...|+++|.+ .++..+.++    |+   +..+....+.+++.+++
T Consensus       108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  185 (312)
T 3vc1_A          108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA  185 (312)
T ss_dssp             HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred             HHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence            344454 4557899999999999999998762  2479999999 889877664    43   33445555667755699


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ||+|+++.+|+|+ +   +..+|.|+.|+|||||.+++.+
T Consensus       186 fD~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          186 VTASWNNESTMYV-D---LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EEEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeEEEECCchhhC-C---HHHHHHHHHHHcCCCcEEEEEE
Confidence            9999999999998 2   8999999999999999999986

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.59  E-value=1e-15  Score=133.78  Aligned_cols=119  Identities=11%  Similarity=0.030  Sum_probs=88.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-c----------------------cccccccccC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-L----------------------IGIYHDWCEG  136 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l----------------------~~~~~~~~e~  136 (235)
                      ...+|||+|||+|.++..|++.+   .+|+++|.| .|+..++++- +                      +..++.....
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            45799999999999999999886   279999999 9999886542 1                      2233444445


Q ss_pred             CCCCC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-C--------hH---HHHHHHHHHhccCceeE
Q 026623          137 FSTYP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-E--------VD---ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       137 l~~~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~--------~~---~~~~i~~~~~~~~W~~~  203 (235)
                      +++.+ ++||+|++..+|+|++ ..+...++.|+.|+|||||.+++.. .        ..   ..+++..++.. .|++.
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~  222 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ  222 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence            66544 8999999999999985 3467789999999999999996432 0        01   13567777766 47765


Q ss_pred             e
Q 026623          204 M  204 (235)
Q Consensus       204 ~  204 (235)
                      .
T Consensus       223 ~  223 (252)
T 2gb4_A          223 C  223 (252)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.59  E-value=4.1e-16  Score=135.44  Aligned_cols=124  Identities=10%  Similarity=0.063  Sum_probs=86.0

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-----c-------------------------
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-----L-------------------------  126 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-----l-------------------------  126 (235)
                      +..+..+|||+|||+|.++..++..+  ..+|+++|.| .|++.+.++-     .                         
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence            33456789999999998877776655  4579999999 9999776531     0                         


Q ss_pred             -----cc-cc-cccccCCCCC---CCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeChH---------
Q 026623          127 -----IG-IY-HDWCEGFSTY---PRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEVD---------  186 (235)
Q Consensus       127 -----~~-~~-~~~~e~l~~~---p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---------  186 (235)
                           +. .+ .|..+..|+.   ..+||+|+|+.+|||+ ++..++..+|.+|.|+|||||+|++++...         
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~  209 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR  209 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCe
Confidence                 00 11 1222223322   3799999999999986 344467899999999999999999995110         


Q ss_pred             -------HHHHHHHHHhccCceeE
Q 026623          187 -------ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       187 -------~~~~i~~~~~~~~W~~~  203 (235)
                             ..+.+...+++-.+++.
T Consensus       210 ~~~~~~~~~~~l~~~l~~aGF~i~  233 (263)
T 2a14_A          210 EFSCVALEKGEVEQAVLDAGFDIE  233 (263)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             EeeccccCHHHHHHHHHHCCCEEE
Confidence                   23456666666666554

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.3e-15  Score=132.24  Aligned_cols=97  Identities=11%  Similarity=0.142  Sum_probs=78.6

Q ss_pred             CCCceEeeeccccchHHHHHhc--CCCceeEEeecCcc-ccHHHHHHc-----Cc---cccccccccCCCCCC------C
Q 026623           80 RRYRNVMDMNAGLGGFAAALES--PKSWVMNVVPTTAK-NTLGVIYER-----GL---IGIYHDWCEGFSTYP------R  142 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~R-----gl---~~~~~~~~e~l~~~p------~  142 (235)
                      .+..+|||+|||+|.++..|++  .+  ..+|+++|.+ .++..+.++     |.   +..++...+.+++.+      +
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKP--FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSC--CSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC--CCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence            3578999999999999999994  22  3579999999 899987765     22   333455556666555      7


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +||+|+|+.+|+|+    ++..+|.++.|+|||||.+++.
T Consensus       113 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          113 KIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEE
Confidence            99999999999988    6789999999999999999993

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.59  E-value=7.3e-15  Score=118.71  Aligned_cols=139  Identities=14%  Similarity=0.076  Sum_probs=99.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeeh-hhhccCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHAN-GVFSLYE  157 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~-~vl~h~~  157 (235)
                      +..+|||+|||+|.++..|...+   .+++++|.+ .++..+.++.- +..++.....+++.+++||+|+++ .+++|+.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~  122 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA  122 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence            46799999999999999998875   379999999 88888777632 233343344456445899999998 7888873


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEeChH---HHHHHHHHHhccCceeEeecCC--CC---CCCCceEEEEEec
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRDEVD---ALNKVRKFAEGMRWDTKMMDHE--DG---PLMPEKILIAVKQ  223 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d~~~---~~~~i~~~~~~~~W~~~~~~~~--~~---~~~~e~~l~~~k~  223 (235)
                       ..+...+|.++.|+|||||.+++.....   ....+..+++...+++......  ..   ....-.+++++|+
T Consensus       123 -~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          123 -EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             -HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             -hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence             2356899999999999999999986432   3556777777777776533221  11   1133456667663

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.59  E-value=9.6e-15  Score=122.91  Aligned_cols=96  Identities=15%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c-cccccccccCCCCCCCccceeeehh-hhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L-IGIYHDWCEGFSTYPRTYDLIHANG-VFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l-~~~~~~~~e~l~~~p~sFDlV~a~~-vl~  154 (235)
                      ..+|||+|||+|.++..|++.    .+++++|.+ .++..+.++.    . +...+...+.++ .+++||+|++.. +++
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-LPEPVDAITILCDSLN  108 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-CSSCEEEEEECTTGGG
T ss_pred             CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-CCCCcCEEEEeCCchh
Confidence            379999999999999999876    479999999 8998877652    1 233333344455 348999999986 999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+.+..++..+|.++.|+|||||.+++.
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9865556789999999999999999984

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.58  E-value=5.6e-15  Score=125.87  Aligned_cols=124  Identities=11%  Similarity=0.075  Sum_probs=88.4

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------------------------------
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------------------------------  126 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------------------------------  126 (235)
                      +.....+|||+|||+|.++..++..+.  .+|+++|.+ .++..+.++--                              
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            334567999999999999998887652  489999999 88888765421                              


Q ss_pred             -----c-ccccccccCC-CCCC---CccceeeehhhhccCCC-CCChHHHHHHHhhhhcCCcEEEEEeCh----------
Q 026623          127 -----I-GIYHDWCEGF-STYP---RTYDLIHANGVFSLYEN-TCKPEDILLEMDRILRPEGAVIFRDEV----------  185 (235)
Q Consensus       127 -----~-~~~~~~~e~l-~~~p---~sFDlV~a~~vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~~----------  185 (235)
                           + .......+.+ ++.+   ++||+|+|+.+|+|+.. ..++..+|.++.|+|||||++++.+..          
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~  210 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ  210 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence                 2 2222222333 2234   89999999999995532 125789999999999999999998621          


Q ss_pred             ----H--HHHHHHHHHhccCceeE
Q 026623          186 ----D--ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       186 ----~--~~~~i~~~~~~~~W~~~  203 (235)
                          .  ..+.+..+++...+++.
T Consensus       211 ~~~~~~~~~~~~~~~l~~aGf~~~  234 (265)
T 2i62_A          211 KFSSLPLGWETVRDAVEEAGYTIE  234 (265)
T ss_dssp             EEECCCCCHHHHHHHHHHTTCEEE
T ss_pred             cccccccCHHHHHHHHHHCCCEEE
Confidence                0  13467777777777765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.58  E-value=2.5e-15  Score=123.97  Aligned_cols=99  Identities=12%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             CceEeeeccccchHH-HHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhc
Q 026623           82 YRNVMDMNAGLGGFA-AALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~fa-a~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ..+|||+|||+|.++ ..+...+   .+++++|.+ .++..+.++    +. +...+...+.+++.+++||+|+++.+++
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  100 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF  100 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence            579999999999974 4444443   379999999 898877664    22 3334444566775569999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      |++ ..++..+|.|+.|+|||||.+++.+.
T Consensus       101 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A          101 HMR-KNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            984 34688999999999999999999863

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.58  E-value=4.9e-15  Score=122.96  Aligned_cols=98  Identities=13%  Similarity=0.178  Sum_probs=79.3

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC--CCCCCCccceeeehhhhccC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG--FSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~--l~~~p~sFDlV~a~~vl~h~  156 (235)
                      .+..+|||+|||+|.++..|.+.+   .+++++|.+ .++..+.++.. ...+...+.  +++.+++||+|+++.+|+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~  106 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL  106 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGS
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhc
Confidence            356799999999999999999884   479999999 88888776642 223322333  45445899999999999998


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +   ++..+|.++.|+|||||.+++.+.
T Consensus       107 ~---~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A          107 F---DPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             S---CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             C---CHHHHHHHHHHHcCCCCEEEEEeC
Confidence            6   678999999999999999999863

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.58  E-value=1.5e-15  Score=139.20  Aligned_cols=101  Identities=21%  Similarity=0.258  Sum_probs=80.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---------C-----ccccccccccCC------C
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---------G-----LIGIYHDWCEGF------S  138 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---------g-----l~~~~~~~~e~l------~  138 (235)
                      .+..+|||+|||+|.++..|++...-...|+++|.+ .++..+.++         |     .+..++...+.+      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            346799999999999998887641002479999999 999988876         4     233344444555      6


Q ss_pred             CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          139 TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       139 ~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.+++||+|+++.+|+|++   ++..+|.|+.|+|||||++++.+
T Consensus       162 ~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence            5569999999999999986   67899999999999999999985

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.58  E-value=6.5e-15  Score=122.72  Aligned_cols=100  Identities=20%  Similarity=0.278  Sum_probs=77.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-----ccccccccccCCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-----LIGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-----l~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.++..|...+.   +++++|.+ .++..+.++.     -+..++...+.+++.+++||+|+++.++++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~  115 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  115 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence            57999999999999999988753   79999999 8888776652     233344444556644589999999999554


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      . +..++..+|.++.|+|||||.+++.+..
T Consensus       116 ~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          116 F-EPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             C-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C-CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            3 2236789999999999999999998753

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.58  E-value=3.2e-15  Score=130.82  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .+..+|||+|||+|.++..|++.-.-...|+++|.+ .++..+.++    +. +....+.++.+++ +++||+|++..++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l   99 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFL   99 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECChh
Confidence            346799999999999999998862112479999999 888877665    21 3344555566664 6899999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +|++   ++..+|.++.|+|||||++++.+..
T Consensus       100 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          100 LHMT---TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            9986   6789999999999999999998754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.57  E-value=4.8e-15  Score=124.43  Aligned_cols=91  Identities=20%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      ..+|||+|||+|.++..|...       +++|.+ .++..+.++++ ..+....+.+++.+++||+|+++.+|+|++   
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~---  116 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---  116 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCC-EEEEcccccCCCCCCCeeEEEEcchHhhcc---
Confidence            569999999999999999864       799999 89998888743 333344456775568999999999999985   


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEe
Q 026623          161 KPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++..+|.++.|+|||||.+++.+
T Consensus       117 ~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          117 DPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEE
Confidence            67899999999999999999985

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.57  E-value=2.5e-15  Score=131.98  Aligned_cols=104  Identities=13%  Similarity=0.213  Sum_probs=79.7

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---------ccccccccccCCCCCCCc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---------LIGIYHDWCEGFSTYPRT  143 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---------l~~~~~~~~e~l~~~p~s  143 (235)
                      +..+... ..+|||+|||+|.++..|++.+   .+|+++|.+ .++..+.++.         -+..+....+.+++ +++
T Consensus        76 ~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  150 (299)
T 3g2m_A           76 ATRTGPV-SGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKR  150 (299)
T ss_dssp             HHHHCCC-CSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCC
T ss_pred             HHhhCCC-CCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCC
Confidence            3344443 3499999999999999999875   369999999 8999877652         13344555566774 799


Q ss_pred             cceeeeh-hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          144 YDLIHAN-GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       144 FDlV~a~-~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ||+|+|+ .+++|+ +..+...+|.++.|+|||||.|++.+
T Consensus       151 fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          151 FGTVVISSGSINEL-DEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             EEEEEECHHHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEECCcccccC-CHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999865 666665 33457899999999999999999986

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.57  E-value=3e-15  Score=129.61  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=80.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCC-CCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFST-YPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~-~p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|.++..|...+  ..+++++|.+ .++..+.++    |+   +...+..++.+++ .+++||+|+|+.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            35799999999999998888765  2379999999 899887765    22   2334444555665 358999999999


Q ss_pred             hhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          152 VFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       152 vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +++|. .+..++..+|.++.|+|||||.+++....
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99873 23346789999999999999999999754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.56  E-value=6.4e-15  Score=130.19  Aligned_cols=104  Identities=11%  Similarity=-0.031  Sum_probs=79.9

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC-----CCCccceeee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST-----YPRTYDLIHA  149 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~-----~p~sFDlV~a  149 (235)
                      .++..+..+|||+|||+|.++..|++++   ..|+++|.| .|+..+.++--...+....+.++.     .+++||+|+|
T Consensus        40 ~l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           40 LENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLN  116 (261)
T ss_dssp             TTTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred             hcCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEE
Confidence            3444556799999999999999999875   379999999 999998876422122222233332     2479999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +.+|+|+. ..+...+|.+|.|+| |||.++++-.
T Consensus       117 ~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          117 DRLINRFT-TEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             ESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            99999984 235778999999999 9999999953

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.55  E-value=2.8e-14  Score=114.65  Aligned_cols=121  Identities=12%  Similarity=0.140  Sum_probs=86.4

Q ss_pred             hhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-c-ccc-ccccCCCCCCCccce
Q 026623           75 SLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-G-IYH-DWCEGFSTYPRTYDL  146 (235)
Q Consensus        75 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~-~~~-~~~e~l~~~p~sFDl  146 (235)
                      ..+...+..+|||+|||+|.++..++.... ...|+++|.+ .++..+.++    |+. . .++ +..+.++..+++||+
T Consensus        19 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~   97 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDV   97 (178)
T ss_dssp             HHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSE
T ss_pred             HHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCE
Confidence            334445567999999999999999987621 3579999999 899887765    332 1 222 222444533489999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~  203 (235)
                      |+++.+++|       ..++.++.|+|||||.+++.+.. +....+..+.+....++.
T Consensus        98 i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 3hm2_A           98 IFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS  148 (178)
T ss_dssp             EEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred             EEECCcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence            999999876       47999999999999999998753 445555666665555543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.55  E-value=1.6e-14  Score=124.28  Aligned_cols=112  Identities=12%  Similarity=0.128  Sum_probs=80.1

Q ss_pred             HHHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-c------cHHHHHHc----Cc---cccccc
Q 026623           68 NAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-N------TLGVIYER----GL---IGIYHD  132 (235)
Q Consensus        68 ~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~------~L~~~~~R----gl---~~~~~~  132 (235)
                      ..+..++..++..+..+|||+|||+|.++..|++. +. ...|+++|.+ .      ++..+.++    |+   +.....
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~-~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~  108 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGS-SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN  108 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCT-TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECS
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            34555666666556789999999999999999875 21 1479999999 5      88877655    22   222222


Q ss_pred             c---ccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          133 W---CEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       133 ~---~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .   .+.+|+.+++||+|+++.+++|++   +...++..+.++++|||++++.+
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFA---SANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSS---CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCC---CHHHHHHHHHHHhCCCCEEEEEE
Confidence            2   234554559999999999999986   45666666666666699999985

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=3e-15  Score=127.27  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=75.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccCC--CCCCCccceeee-hh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEGF--STYPRTYDLIHA-NG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~l--~~~p~sFDlV~a-~~  151 (235)
                      ...+|||+|||+|.++..|.+.+  ...|+++|.+ .|++.+.++.-     +..++..++.+  ++.+++||+|++ ..
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            46799999999999999998765  3489999999 99998877531     22334444445  555699999999 55


Q ss_pred             hhc-cCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFS-LYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~-h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      .++ +..+..+.+.+|.|+.|+|||||.|++.+.
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            441 111222355889999999999999998863

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.54  E-value=1.5e-14  Score=119.12  Aligned_cols=94  Identities=17%  Similarity=0.219  Sum_probs=74.1

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhccCC
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      +|||+|||+|.++..|++.+   .+++++|.+ .++..+.++    |+ +.......+.+++.+++||+|+++  +.|+ 
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~-  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHL-  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCC-
T ss_pred             CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcC-
Confidence            99999999999999999875   379999999 888877665    32 233344445566555899999994  4455 


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +..++..+|.++.|+|||||.+++.+
T Consensus       106 ~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          106 PSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             CHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            33467899999999999999999995

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=1.2e-14  Score=123.56  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccce
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDl  146 (235)
                      ++..+...+..+|||+|||+|.++..|++.+   .+|+++|.+ .++..+.++    ++ +..++.....++ .+++||+
T Consensus        33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~  108 (252)
T 1wzn_A           33 IFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDA  108 (252)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEE
T ss_pred             HHHHhcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-cCCCccE
Confidence            3443443446799999999999999999875   379999999 899887664    32 233344444555 4589999


Q ss_pred             eeeh-hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHAN-GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~-~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|. ..++|+ +..++..+|.++.|+|||||.+++..
T Consensus       109 v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          109 VTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCCchhcC-CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            9986 345554 33467899999999999999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.53  E-value=2.4e-14  Score=128.62  Aligned_cols=134  Identities=17%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccccccccCCCC--CC-Cccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIYHDWCEGFST--YP-RTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~~~~~e~l~~--~p-~sFDlV~a~~vl~  154 (235)
                      ...+|||+|||||+|+..|++.+  ...|+++|.+ +||..+.++.  +........+.++.  .| .+||+|+|+.+|+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~  162 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI  162 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred             cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence            46799999999999999998876  3479999999 9998755421  11100001111221  23 5699999998887


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeC----------------------hHHHHHHHHHHhccCceeE--eecCCCC
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDE----------------------VDALNKVRKFAEGMRWDTK--MMDHEDG  210 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~----------------------~~~~~~i~~~~~~~~W~~~--~~~~~~~  210 (235)
                      ++      ..+|.|+.|+|||||.+++...                      ....+++..++....|.+.  .+....|
T Consensus       163 sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g  236 (291)
T 3hp7_A          163 SL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQG  236 (291)
T ss_dssp             CG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCC
T ss_pred             hH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Confidence            44      6899999999999999999811                      1135667788888899876  2333345


Q ss_pred             CCCCceEEE-EEe
Q 026623          211 PLMPEKILI-AVK  222 (235)
Q Consensus       211 ~~~~e~~l~-~~k  222 (235)
                      +.+.-.+|+ ++|
T Consensus       237 ~~gn~e~l~~~~~  249 (291)
T 3hp7_A          237 GHGNIEFLAHLEK  249 (291)
T ss_dssp             GGGCCCEEEEEEE
T ss_pred             CCcCHHHHHHhhh
Confidence            554444554 444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.53  E-value=3.5e-15  Score=130.43  Aligned_cols=144  Identities=10%  Similarity=0.069  Sum_probs=91.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------------------ccc-------------
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------------------LIG-------------  128 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------------------l~~-------------  128 (235)
                      ...+|||+|||+|.++..+...+  ..+|+++|+| .|+..+.++-                  +.+             
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            46799999999999554443322  2379999999 9998766521                  011             


Q ss_pred             -----ccc-ccccCCCC----C-CCccceeeehhhhccCCC-CCChHHHHHHHhhhhcCCcEEEEEeCh-----------
Q 026623          129 -----IYH-DWCEGFST----Y-PRTYDLIHANGVFSLYEN-TCKPEDILLEMDRILRPEGAVIFRDEV-----------  185 (235)
Q Consensus       129 -----~~~-~~~e~l~~----~-p~sFDlV~a~~vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~~-----------  185 (235)
                           .+. |..+.+|+    + +++||+|+|+.+|+|+.. ..++..+|.|+.|+|||||+|++.+..           
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~  228 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  228 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence                 011 22222442    2 377999999999999542 126789999999999999999997310           


Q ss_pred             -----HHHHHHHHHHhccCceeEeec-------CCC-CCCCCceEEEEEecccc
Q 026623          186 -----DALNKVRKFAEGMRWDTKMMD-------HED-GPLMPEKILIAVKQYWV  226 (235)
Q Consensus       186 -----~~~~~i~~~~~~~~W~~~~~~-------~~~-~~~~~e~~l~~~k~~w~  226 (235)
                           -....+.++++.-.+++....       ... .+.....+.+++|+-|.
T Consensus       229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (289)
T 2g72_A          229 LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL  282 (289)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC-
T ss_pred             eeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEecccc
Confidence                 024566777776666653211       111 11223456677777664

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.53  E-value=7e-14  Score=115.90  Aligned_cols=123  Identities=17%  Similarity=0.184  Sum_probs=88.8

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDl  146 (235)
                      +..+...+..+|||+|||+|.++..|++... ...|+++|.+ ++++.+.++    |+  +..++...........+||+
T Consensus        33 l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~  111 (204)
T 3e05_A           33 LSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDR  111 (204)
T ss_dssp             HHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSE
T ss_pred             HHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCE
Confidence            4445555578999999999999999987631 2479999999 888877664    33  22233222222212378999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~  203 (235)
                      |+++..++      ++..++.++.|+|||||.+++.... +....+.+.++...|++.
T Consensus       112 i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  163 (204)
T 3e05_A          112 VFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVE  163 (204)
T ss_dssp             EEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCcee
Confidence            99987764      6789999999999999999999654 456677777777777543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.53  E-value=5.1e-15  Score=127.10  Aligned_cols=98  Identities=11%  Similarity=0.063  Sum_probs=71.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccC-C-CCCCCccceeeehh-
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEG-F-STYPRTYDLIHANG-  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~-l-~~~p~sFDlV~a~~-  151 (235)
                      ++.+|||+|||+|.++.+|++..  ..+++++|.+ .+++.+.++.-     +..+...++. + ++.+++||.|+... 
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            46799999999999999998865  3579999999 99998877532     1122222222 2 23348899987543 


Q ss_pred             ----hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 ----VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 ----vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                          .++|+   .+.+.++.|+.|+|||||.|++.+
T Consensus       138 ~~~~~~~~~---~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          138 PLSEETWHT---HQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGTTT---HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccchhhh---cchhhhhhhhhheeCCCCEEEEEe
Confidence                33344   367899999999999999999874

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.53  E-value=2.6e-14  Score=115.30  Aligned_cols=122  Identities=14%  Similarity=0.165  Sum_probs=84.3

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccccCCCCCCCccce
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~e~l~~~p~sFDl  146 (235)
                      .+...+..+|||+|||+|.++..+...+   .+++++|.+ .++..+.++    ++.    ...+..... +..+++||+
T Consensus        47 ~~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~  122 (194)
T 1dus_A           47 NVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNK  122 (194)
T ss_dssp             HCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEE
T ss_pred             HcccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceE
Confidence            3444456799999999999999998773   479999999 888877665    332    222222222 222589999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCceeE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~  203 (235)
                      |+++..++|..  .++..++.++.|+|||||.+++.+... ....+.+.++..-+.+.
T Consensus       123 v~~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~  178 (194)
T 1dus_A          123 IITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             EEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCE
T ss_pred             EEECCCcccch--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceE
Confidence            99998887622  356799999999999999999997543 33334444444433333

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=6.7e-15  Score=124.94  Aligned_cols=100  Identities=14%  Similarity=-0.009  Sum_probs=76.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCC---CC--Cccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFST---YP--RTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~---~p--~sFDlV~a~~  151 (235)
                      +..+|||+|||+|.++..|++.+.   +|+++|.+ .++..+.++.-   +..+....+.+++   ++  ..||+|+++.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence            356899999999999999988653   69999999 89998877642   2222222222221   11  3499999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +++|++ ..+...+|.|+.|+|||||++++.+.
T Consensus       133 ~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          133 GFHHIP-VEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             SSTTSC-GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999984 34688999999999999999998863

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.52  E-value=9.4e-14  Score=118.63  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=94.6

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCC---CCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTY---PRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~---p~sFDlV~a  149 (235)
                      ...+|||+|||+|.++..|+.. +  ...|+++|.+ .++..+.++    |+  +..++..++.+++.   +++||+|+|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFP--HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            4579999999999998888742 2  2479999999 898876653    44  33445545556643   589999998


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh---HHHHHHHHHHhccCceeEeec--CCCCCCCCceEEEEEecc
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV---DALNKVRKFAEGMRWDTKMMD--HEDGPLMPEKILIAVKQY  224 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~---~~~~~i~~~~~~~~W~~~~~~--~~~~~~~~e~~l~~~k~~  224 (235)
                      ..+       .++..++.++.|+|||||.+++.+..   +.+..+.+.++...+.+....  ........-.+++.+|.=
T Consensus       148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~  220 (240)
T 1xdz_A          148 RAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK  220 (240)
T ss_dssp             ECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred             ecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecC
Confidence            652       36789999999999999999998643   334556666777777764221  111111334566677764


Q ss_pred             ccC
Q 026623          225 WVG  227 (235)
Q Consensus       225 w~~  227 (235)
                      ..+
T Consensus       221 ~~~  223 (240)
T 1xdz_A          221 NTP  223 (240)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.52  E-value=8.1e-14  Score=118.05  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=66.3

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCccccccccccCC---CCCCCccceeeeh
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGLIGIYHDWCEGF---STYPRTYDLIHAN  150 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~~~~~~e~l---~~~p~sFDlV~a~  150 (235)
                      ..+..+|||+|||+|.++..|++... ...|+++|.| .|+.    .+..+..+..+...++..   ..++++||+|+|+
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            34567999999999999998876421 2379999999 6553    343333222222222221   1234899999997


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      . .    +..+...+|.|+.|+|||||.|++.-
T Consensus       134 ~-~----~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          134 I-A----QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             C-C----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-c----ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            2 2    11234456999999999999999983

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.52  E-value=6.4e-15  Score=130.38  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=79.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------------ccccccccccCCC----CC--
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------------LIGIYHDWCEGFS----TY--  140 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------------l~~~~~~~~e~l~----~~--  140 (235)
                      +..+|||+|||+|.++..|.+.+  ...++++|.+ .+++.+.++.             -+..++..++.++    +.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            45799999999999999998754  3479999999 8998877652             1223444555554    32  


Q ss_pred             CCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          141 PRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +++||+|+|+.+|||. .+..++..+|.++.|+|||||.++++...
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3699999999999987 44345679999999999999999999754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.51  E-value=5.8e-15  Score=130.36  Aligned_cols=101  Identities=13%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc--------------------------------
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL--------------------------------  126 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl--------------------------------  126 (235)
                      ...+|||+|||+|.++..|+.. +  ...|+++|++ .++..+.++--                                
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~--~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG--PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC--CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            4679999999999999999875 3  2479999999 88988776511                                


Q ss_pred             --------------------------------cccccccccC-----CCCCCCccceeeehhhhccCC---CCCChHHHH
Q 026623          127 --------------------------------IGIYHDWCEG-----FSTYPRTYDLIHANGVFSLYE---NTCKPEDIL  166 (235)
Q Consensus       127 --------------------------------~~~~~~~~e~-----l~~~p~sFDlV~a~~vl~h~~---~~~~~~~~L  166 (235)
                                                      +...+.....     +++.+++||+|+|..+++|+.   ...++..+|
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                            1111111111     123458999999999997652   334678999


Q ss_pred             HHHhhhhcCCcEEEEEe
Q 026623          167 LEMDRILRPEGAVIFRD  183 (235)
Q Consensus       167 ~Em~RVLRPGG~lii~d  183 (235)
                      .++.|+|||||+|++..
T Consensus       204 ~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHhCCCcEEEEec
Confidence            99999999999999974

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.51  E-value=1.6e-14  Score=117.21  Aligned_cols=134  Identities=16%  Similarity=0.137  Sum_probs=91.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccccccccCCCC---CCCccceeeeh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIYHDWCEGFST---YPRTYDLIHAN  150 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~~~~~e~l~~---~p~sFDlV~a~  150 (235)
                      ++-.++.+|||+|||.                 +.+|.| .|++.+.++.  .+...+...+.+++   .+++||+|+|+
T Consensus         8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence            4445578999999985                 238889 9999888773  23344445566775   45999999999


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH----------HHHHHHHHHhccCceeEeecCCCCCC--------
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD----------ALNKVRKFAEGMRWDTKMMDHEDGPL--------  212 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~----------~~~~i~~~~~~~~W~~~~~~~~~~~~--------  212 (235)
                      .+|+|+.  .++..+|.|+.|+|||||+|++.+...          ....+...++.-.+ +........+.        
T Consensus        71 ~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~  147 (176)
T 2ld4_A           71 LVPGSTT--LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSV  147 (176)
T ss_dssp             CSTTCCC--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHH
T ss_pred             Chhhhcc--cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHH
Confidence            9999982  256899999999999999999975311          13455566555445 33222111000        


Q ss_pred             -------C---CceEEEEEeccccCCCC
Q 026623          213 -------M---PEKILIAVKQYWVGSAG  230 (235)
Q Consensus       213 -------~---~e~~l~~~k~~w~~~~~  230 (235)
                             .   .-.+++++|+-|..+++
T Consensus       148 ~~~~g~~~~~~~~~~~~a~Kp~~~~gs~  175 (176)
T 2ld4_A          148 REHLGHESDNLLFVQITGKKPNFEVGSS  175 (176)
T ss_dssp             HHHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred             HHHhcccCCceEEEEEeccCCcccccCC
Confidence                   1   14578999998877654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.50  E-value=4.1e-14  Score=117.15  Aligned_cols=115  Identities=22%  Similarity=0.298  Sum_probs=87.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..|++.+.  ..|+++|.+ .++..+.++    |+  +...+.  +.+++.+++||+|+++.++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~fD~i~~~~~~  135 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKT--SLLADVDGKFDLIVANILA  135 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEES--STTTTCCSCEEEEEEESCH
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEec--cccccCCCCceEEEECCcH
Confidence            357999999999999999988752  479999999 888877665    43  222222  2234446999999999888


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHHhccCceeEee
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~~~~~W~~~~~  205 (235)
                      +++      ..++.++.|+|||||.+++.+. ......+..+++...++....
T Consensus       136 ~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          136 EIL------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK  182 (205)
T ss_dssp             HHH------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred             HHH------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence            753      6899999999999999999863 334666777777777876543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.50  E-value=1.1e-13  Score=116.28  Aligned_cols=139  Identities=15%  Similarity=0.072  Sum_probs=95.3

Q ss_pred             CCceEeeeccc-cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCC-CCccceeeehhh
Q 026623           81 RYRNVMDMNAG-LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTY-PRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG-~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~-p~sFDlV~a~~v  152 (235)
                      +..+|||+||| +|.++..|+...  ..+|+++|.+ .++..+.++    |+ +..++..++.+..+ +++||+|+++-.
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence            35799999999 999999988763  2479999999 888876654    43 23333332223323 489999999877


Q ss_pred             hccCCCC----------------CChHHHHHHHhhhhcCCcEEEEEeC--hHHHHHHHHHHhccCceeEeecCCCCCCCC
Q 026623          153 FSLYENT----------------CKPEDILLEMDRILRPEGAVIFRDE--VDALNKVRKFAEGMRWDTKMMDHEDGPLMP  214 (235)
Q Consensus       153 l~h~~~~----------------~~~~~~L~Em~RVLRPGG~lii~d~--~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~  214 (235)
                      +++..+.                ..+..++.++.|+|||||.+++...  ......+.+.++...|.+.......|. ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~  211 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RW  211 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--C
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eE
Confidence            6553221                1147899999999999999998643  345677888888889988765544333 34


Q ss_pred             ceEEEEEe
Q 026623          215 EKILIAVK  222 (235)
Q Consensus       215 e~~l~~~k  222 (235)
                      -.+|..+|
T Consensus       212 ~~~l~f~~  219 (230)
T 3evz_A          212 RHSLIFFK  219 (230)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            45555554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.49  E-value=8.6e-14  Score=109.99  Aligned_cols=137  Identities=9%  Similarity=0.053  Sum_probs=86.8

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCccccHHHHHHcCccccccccccCCC--------CCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--------TYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--------~~p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|.++..+.+. +. ...++++|.+.++..    .-+.......+.++        +.+++||+|+++.
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~   96 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGG-KGRIIACDLLPMDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCT-TCEEEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCC-CCeEEEEECcccccc----CcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence            3569999999999999999875 21 247999999864332    11222222223333        3358999999999


Q ss_pred             hhccCCCCC--C------hHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCC--CCCCCCceEEEE
Q 026623          152 VFSLYENTC--K------PEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHE--DGPLMPEKILIA  220 (235)
Q Consensus       152 vl~h~~~~~--~------~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~--~~~~~~e~~l~~  220 (235)
                      .+++..+..  .      ...+|.++.|+|||||.+++.+.. +....+....+. .|........  ......|.+++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  175 (180)
T 1ej0_A           97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVA  175 (180)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEEEE
T ss_pred             CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEEEE
Confidence            887653210  0      168999999999999999998632 223333444444 3554322122  223357889988


Q ss_pred             Eec
Q 026623          221 VKQ  223 (235)
Q Consensus       221 ~k~  223 (235)
                      ++.
T Consensus       176 ~~~  178 (180)
T 1ej0_A          176 TGR  178 (180)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.48  E-value=1.3e-13  Score=124.33  Aligned_cols=133  Identities=12%  Similarity=0.102  Sum_probs=90.1

Q ss_pred             CCCCCceEeeeccccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +..+..+|||+|||+|++++.+.. ..  ...|+++|.+ ++++.|.++    |+  +......+..++  +++||+|++
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~  194 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV  194 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence            445578999999999998765543 22  3579999999 999987765    55  223333334444  599999998


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHH----HH-HHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALN----KV-RKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~----~i-~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      ..+.      .+.+.++.|+.|+|||||.+++++....-.    .+ ....+  .|+.....+..+. ..+.+.+++|.
T Consensus       195 ~a~~------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~-v~N~vv~a~k~  264 (298)
T 3fpf_A          195 AALA------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGK-VNNTSVLVFKC  264 (298)
T ss_dssp             CTTC------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTT-CCCEEEEEEEC
T ss_pred             CCCc------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCC-cCcEEEEEEcc
Confidence            6542      367899999999999999999998543100    00 11222  5766654455443 45678888774

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.48  E-value=2.2e-13  Score=110.98  Aligned_cols=129  Identities=13%  Similarity=0.105  Sum_probs=91.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCC-
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT-  159 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~-  159 (235)
                      ..+|||+|||+|.++..|++.+    +|+++|.+ .++..   ...+..++...+. ++.+++||+|+++..+++.++. 
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~   95 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDP   95 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCT
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccc
Confidence            4599999999999999999875    79999999 88876   2223333333332 3334999999999888865432 


Q ss_pred             -----CChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEE
Q 026623          160 -----CKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAV  221 (235)
Q Consensus       160 -----~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~  221 (235)
                           .+...++.++.|.| |||.+++.... .....+.++++...|+.........  ..|++++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~--~~e~~~~~~  160 (170)
T 3q87_B           96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKI--LGETVYIIK  160 (170)
T ss_dssp             TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEEC--SSSEEEEEE
T ss_pred             cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeecc--CCceEEEEE
Confidence                 12357899999999 99999998744 4466788888888888764433322  345666554

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.47  E-value=2.8e-13  Score=113.81  Aligned_cols=118  Identities=9%  Similarity=0.078  Sum_probs=85.0

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccC-CCCCCCcc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEG-FSTYPRTY  144 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~-l~~~p~sF  144 (235)
                      +..+......+|||+|||+|.++..|+..+   ..|+++|.+ ++++.+.++    |+.   ..++..++. ++ ...+|
T Consensus        48 l~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~  123 (204)
T 3njr_A           48 LAALAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLP  123 (204)
T ss_dssp             HHHHCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCC
T ss_pred             HHhcCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCC
Confidence            333444556799999999999999998873   479999999 899877665    433   233333333 22 22689


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHHhccCceeE
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~~~~~W~~~  203 (235)
                      |+|+++..+       +.. ++.++.|+|||||.+++... .+....+.+.++...+++.
T Consensus       124 D~v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~  175 (204)
T 3njr_A          124 EAVFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL  175 (204)
T ss_dssp             SEEEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred             CEEEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence            999986533       456 99999999999999999874 4556666666666666654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.47  E-value=1.7e-13  Score=119.22  Aligned_cols=159  Identities=14%  Similarity=0.028  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--ccccc
Q 026623           60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYH  131 (235)
Q Consensus        60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~  131 (235)
                      .+.|...+..-..++..+......+|||+|||+|.++..|+.. +  ...|+++|.+ .++.++.+.    |+  +..++
T Consensus        59 ~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~  136 (249)
T 3g89_A           59 EEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRP--ELELVLVDATRKKVAFVERAIEVLGLKGARALW  136 (249)
T ss_dssp             HHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred             HHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEE
Confidence            4455444433222332233334679999999999988888753 3  2479999999 888876654    54  34455


Q ss_pred             ccccCCCC---CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC---hHHHHHHHHHHhccCceeEee
Q 026623          132 DWCEGFST---YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE---VDALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       132 ~~~e~l~~---~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~---~~~~~~i~~~~~~~~W~~~~~  205 (235)
                      ...+.++.   ++++||+|+|..+       .++..++.++.|+|||||.+++...   .+.+..+...++.+.+++...
T Consensus       137 ~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          137 GRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV  209 (249)
T ss_dssp             CCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE
T ss_pred             CcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE
Confidence            55566653   3489999998543       3678999999999999999998764   344555666677778876422


Q ss_pred             c--CCCCCCCCceEEEEEeccccC
Q 026623          206 D--HEDGPLMPEKILIAVKQYWVG  227 (235)
Q Consensus       206 ~--~~~~~~~~e~~l~~~k~~w~~  227 (235)
                      .  ...+....-.+++.+|.-.++
T Consensus       210 ~~~~~p~~~~~R~l~~~~k~~~t~  233 (249)
T 3g89_A          210 LALQLPLSGEARHLVVLEKTAPTP  233 (249)
T ss_dssp             EEEECTTTCCEEEEEEEEECSCCC
T ss_pred             EEeeCCCCCCcEEEEEEEeCCCCC
Confidence            1  111221233455566654443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.47  E-value=1.2e-13  Score=121.62  Aligned_cols=101  Identities=11%  Similarity=0.034  Sum_probs=75.9

Q ss_pred             CCceEeeecccc---chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC----ccccccccccCC----------CCCC
Q 026623           81 RYRNVMDMNAGL---GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGF----------STYP  141 (235)
Q Consensus        81 ~~r~VLD~GCG~---G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l----------~~~p  141 (235)
                      ..++|||+|||+   |.++..+... +  ...|+++|.| .||..+.++-    .+..++......          ..++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p--~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP--DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT--TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC--CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence            468999999999   9887666542 2  2479999998 9999877652    122222222211          1234


Q ss_pred             -CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          142 -RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       142 -~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                       .+||+|+++.+|||+++. ++..+|.|+.|+|||||+|++++.
T Consensus       155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence             689999999999999754 689999999999999999999974

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.46  E-value=2.5e-13  Score=113.75  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=85.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC--CCCCccceeeehhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS--TYPRTYDLIHANGV  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~--~~p~sFDlV~a~~v  152 (235)
                      ..+|||+|||+|.++..|+.... ..+++++|.+ .++..+.++    |+  +..++..++.++  +.+++||+|+++..
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            56899999999999999987521 2479999999 888876654    33  333444444455  34589999999755


Q ss_pred             hccCC-----CCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeE
Q 026623          153 FSLYE-----NTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       153 l~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~  203 (235)
                      ..+..     .+-....+|.++.|+|||||.+++.. ..+....+.+.++...|.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~  177 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  177 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence            42211     11124689999999999999999985 44556666666666667654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.46  E-value=5.9e-14  Score=115.24  Aligned_cols=140  Identities=13%  Similarity=0.082  Sum_probs=82.1

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCC-----Cccceee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYP-----RTYDLIH  148 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p-----~sFDlV~  148 (235)
                      .+..+|||+|||+|.++..+++... ..+++++|.+ .++..+.++    |+ +..++..... ++.+     ++||+|+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~  106 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIV  106 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEE
Confidence            3467999999999999999987631 2479999999 888876654    21 1222222222 2222     8999999


Q ss_pred             ehhhhcc------CCCCC-------C----------hHHHHHHHhhhhcCCcE-EEEEeChHHHHHHHHHHh--ccCcee
Q 026623          149 ANGVFSL------YENTC-------K----------PEDILLEMDRILRPEGA-VIFRDEVDALNKVRKFAE--GMRWDT  202 (235)
Q Consensus       149 a~~vl~h------~~~~~-------~----------~~~~L~Em~RVLRPGG~-lii~d~~~~~~~i~~~~~--~~~W~~  202 (235)
                      ++.-+++      +....       .          +..++.++.|+|||||+ +++.-.......+..+++  .-.|..
T Consensus       107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~  186 (215)
T 4dzr_A          107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFR  186 (215)
T ss_dssp             ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEE
T ss_pred             ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCce
Confidence            9654432      21100       0          17899999999999999 666544444556677777  566654


Q ss_pred             EeecCCCCCCCCceEEEEEec
Q 026623          203 KMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       203 ~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      ......  ..+.+++++++|+
T Consensus       187 ~~~~~~--~~~~~r~~~~~~~  205 (215)
T 4dzr_A          187 VRKVKD--LRGIDRVIAVTRE  205 (215)
T ss_dssp             CCEEEC--TTSCEEEEEEEEC
T ss_pred             EEEEEe--cCCCEEEEEEEEc
Confidence            321111  1246889998875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.46  E-value=2.4e-13  Score=112.30  Aligned_cols=129  Identities=9%  Similarity=0.084  Sum_probs=88.9

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.++..|+.. +  ...++++|.+ .++..+.++    |+  +...+...+.++ .+++||+|+++.+ 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-  141 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRP--EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred             CCeEEEECCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc-
Confidence            469999999999999888864 3  2479999999 888876653    44  233333333333 2489999998542 


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEe---ecCCCCCCCCceEEEEEec
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKM---MDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~---~~~~~~~~~~e~~l~~~k~  223 (235)
                            .++..++.++.|+|||||.+++.......+.++.+.+  .|+...   +...+ ..+...+++++|+
T Consensus       142 ------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~-~~~~~~~~~~~k~  205 (207)
T 1jsx_A          142 ------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPA-LDGERHLVVIKAN  205 (207)
T ss_dssp             ------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC---CCEEEEEEEEEC
T ss_pred             ------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCC-CCCceEEEEEEec
Confidence                  2568999999999999999999976554556666655  676543   12222 2245677777764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.45  E-value=8.5e-14  Score=126.47  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..+++.+  ...|+++|.++++..+.++    |+   +..++...+.+++.+++||+|+++.+.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEEeccchHHHHHHHHCC--CCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            45789999999999999999875  3479999999877766553    44   344555566677445999999998776


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +++.....+..++.+++|+|||||.++..
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            65544457899999999999999998754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.44  E-value=1.8e-13  Score=124.00  Aligned_cols=101  Identities=15%  Similarity=0.114  Sum_probs=75.9

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccceeeeh
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ...+..+|||+|||+|.++..+++.+  ...|+++|.++++..+.++    |+   +..++...+.+++.+++||+|+++
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~  138 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE  138 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEc
Confidence            33446799999999999999998875  2479999999877766553    33   334455556676445899999997


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVI  180 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~li  180 (235)
                      .+.+++.+..++..+|.++.|+|||||.++
T Consensus       139 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          139 WMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            743333333467889999999999999998

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=3.6e-13  Score=107.83  Aligned_cols=116  Identities=13%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +......+|||+|||+|.++..|+. +  ..+++++|.+ .++..+.++    |+  +..++...+. ++.+++||+|++
T Consensus        31 ~~~~~~~~vLdiG~G~G~~~~~l~~-~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~  106 (183)
T 2yxd_A           31 LNLNKDDVVVDVGCGSGGMTVEIAK-R--CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFI  106 (183)
T ss_dssp             HCCCTTCEEEEESCCCSHHHHHHHT-T--SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEE
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHh-c--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEE
Confidence            3334467999999999999999988 3  3579999999 888877665    33  2222222222 222379999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeEee
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~~~  205 (235)
                      +.+       .++..++.++.|+  |||.+++.+ ..+....+.+.++...|++...
T Consensus       107 ~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          107 GGT-------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             CSC-------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCc-------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence            777       3678999999999  999999998 4455667777777777887643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.44  E-value=3.4e-13  Score=113.85  Aligned_cols=120  Identities=8%  Similarity=0.071  Sum_probs=81.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC--CCCCccceeeehhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS--TYPRTYDLIHANGV  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~--~~p~sFDlV~a~~v  152 (235)
                      ..+|||+|||+|.++..|+.... ..+++++|.+ .++..+.++    |+  +..++..+..++  +.+++||.|+++..
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            56899999999999999987421 2479999999 898876654    44  233444444444  33589999987543


Q ss_pred             hccC-----CCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCcee
Q 026623          153 FSLY-----ENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       153 l~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~  202 (235)
                      ..+.     ..+-....+|.++.|+|||||.|++.. ..+....+...+....|..
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  173 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence            2211     111123689999999999999999875 5555555555555555654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.43  E-value=3e-13  Score=111.24  Aligned_cols=139  Identities=11%  Similarity=0.094  Sum_probs=82.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCC-ceeEEeecCccccHHHHHHcCccccccccccCCC---------------------
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKS-WVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS---------------------  138 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~-~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~---------------------  138 (235)
                      +..+|||+|||+|.++..|+++.. ....|+++|.+.+..   ..+ +...+...+.++                     
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---~~~-v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~   97 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---IPN-VYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK   97 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---CTT-CEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---CCC-ceEEEccccchhhhhhccccccccccchhhHHH
Confidence            357899999999999999986421 024799999986421   011 112222223333                     


Q ss_pred             ----CCCCccceeeehhhhccCCCC-CCh-------HHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEee
Q 026623          139 ----TYPRTYDLIHANGVFSLYENT-CKP-------EDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       139 ----~~p~sFDlV~a~~vl~h~~~~-~~~-------~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~  205 (235)
                          +.+++||+|+|+..+++.... .+.       ..+|.++.|+|||||.|++.... +....+...++..--.+...
T Consensus        98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~v~~~  177 (201)
T 2plw_A           98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTT  177 (201)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEEEEEC
T ss_pred             HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHheEEEE
Confidence                224799999998877653100 011       24899999999999999996532 22333444444432223332


Q ss_pred             cCC-CCCCCCceEEEEEec
Q 026623          206 DHE-DGPLMPEKILIAVKQ  223 (235)
Q Consensus       206 ~~~-~~~~~~e~~l~~~k~  223 (235)
                      ... ..+...|.+++|++.
T Consensus       178 ~~~~~r~~s~e~y~v~~~~  196 (201)
T 2plw_A          178 KPKASRNESREIYLVCKNF  196 (201)
T ss_dssp             CCC-----CCEEEEEEEEE
T ss_pred             CCcccCCcCceEEEEEecC
Confidence            222 223367999999863

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.42  E-value=2.7e-13  Score=122.01  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..+++.+.  ..|+++|.+.++..+.++    |+   +..++...+.+++.+++||+|++..+.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            356999999999999999988753  479999999777765553    44   334455556666444899999998766


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii  181 (235)
                      +++.+...+..+|.+++|+|||||.++.
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            6554555788999999999999999983

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.42  E-value=1.7e-13  Score=124.59  Aligned_cols=102  Identities=11%  Similarity=0.157  Sum_probs=76.1

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCC-CCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFS-TYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~-~~p~sFDlV~a~~  151 (235)
                      ....+|||+|||+|.++..|++... ...++++|.+.+++.+.++    |+   +........... .+|++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            3467999999999999999987421 2479999998888877665    33   222222222221 1458999999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|||+++ .+...+|+++.|+|||||.++|.|
T Consensus       257 vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          257 FLDCFSE-EEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             CSTTSCH-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             hhhhCCH-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9998853 345689999999999999999986

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.42  E-value=5.7e-13  Score=116.15  Aligned_cols=135  Identities=16%  Similarity=0.215  Sum_probs=93.0

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--ccccc-ccccCCCCCCCccceeeeh-
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYH-DWCEGFSTYPRTYDLIHAN-  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~-~~~e~l~~~p~sFDlV~a~-  150 (235)
                      ...+|||+|||+|.++..|+.. +  ..+|+++|.+ .++..+.++    |+  +..++ |+.+.+  .+++||+|+++ 
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~~fD~Iv~np  184 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL--AGQQFAMIVSNP  184 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG--TTCCEEEEEECC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc--ccCCccEEEECC
Confidence            4569999999999999999853 3  2479999999 888877665    43  22222 222222  25899999998 


Q ss_pred             ------------hhhccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE-eecCC
Q 026623          151 ------------GVFSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK-MMDHE  208 (235)
Q Consensus       151 ------------~vl~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~-~~~~~  208 (235)
                                  .+++|.+..         ..+..++.++.|+|||||++++.........+.++++...|... .... 
T Consensus       185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d-  263 (276)
T 2b3t_A          185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD-  263 (276)
T ss_dssp             CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC-
T ss_pred             CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec-
Confidence                        455554321         13478999999999999999998765555667777776666533 2211 


Q ss_pred             CCCCCCceEEEEEe
Q 026623          209 DGPLMPEKILIAVK  222 (235)
Q Consensus       209 ~~~~~~e~~l~~~k  222 (235)
                        ..+.+++++++|
T Consensus       264 --~~g~~r~~~~~~  275 (276)
T 2b3t_A          264 --YGDNERVTLGRY  275 (276)
T ss_dssp             --TTSSEEEEEEEC
T ss_pred             --CCCCCcEEEEEE
Confidence              125788988875

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.42  E-value=3.4e-13  Score=123.80  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccceeeeh
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ......+|||+|||+|.++..+++.+.  ..|+++|.++|+..+.++    |+   +..++...+.++ ++++||+|+++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~  136 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISE  136 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEEC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEc
Confidence            334567999999999999999988763  379999999888876554    43   344555556666 44999999997


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+.+++.....+..++.+++|+|||||.+++..
T Consensus       137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             ChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            766666444568899999999999999998863

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.42  E-value=2.6e-13  Score=111.30  Aligned_cols=101  Identities=17%  Similarity=0.198  Sum_probs=76.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC-CC-CCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS-TY-PRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~-~~-p~sFDlV~a~~  151 (235)
                      ...+|||+|||+|.++..++..+  ...|+++|.+ .+++.+.++    |+  +..++..++.++ .+ +++||+|+++.
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            46799999999999999777765  2479999999 898876654    43  223333333332 13 58999999998


Q ss_pred             hhccCCCCCChHHHHHHHhh--hhcCCcEEEEEeCh
Q 026623          152 VFSLYENTCKPEDILLEMDR--ILRPEGAVIFRDEV  185 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~R--VLRPGG~lii~d~~  185 (235)
                      .+++..  .++..++.++.|  +|||||.+++....
T Consensus       122 p~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          122 PYNVDS--ADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             CTTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCCcch--hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            887642  367899999999  99999999998643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.41  E-value=1.3e-13  Score=116.61  Aligned_cols=109  Identities=14%  Similarity=0.228  Sum_probs=79.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-ccccc-ccccCCCCC-CCccceeeehhhhccCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYH-DWCEGFSTY-PRTYDLIHANGVFSLYE  157 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~-~~~e~l~~~-p~sFDlV~a~~vl~h~~  157 (235)
                      ..+|||+|||+|.++..|++.+   ..|+++|.+ .++..+.++.. +..++ |..+.+|+. +++||+|+++       
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------  118 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------  118 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred             CCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence            5799999999999999999874   479999999 99999888732 22333 333667766 6999999986       


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCcee
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~  202 (235)
                        .++..+|.++.|+|||||.++..........+...+....+..
T Consensus       119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~  161 (226)
T 3m33_A          119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI  161 (226)
T ss_dssp             --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred             --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence              1456899999999999999994432222234445555544443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.41  E-value=5.4e-13  Score=107.40  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=84.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccC-CCCCCCcccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEG-FSTYPRTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~-l~~~p~sFDlV  147 (235)
                      +...+..+|||+|||+|.++..+....   ..++++|.+ .++..+.++    |+   +...+...+. ++ ..++||+|
T Consensus        29 ~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v  104 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-KIPDIDIA  104 (192)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-TSCCEEEE
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc-cCCCCCEE
Confidence            334456799999999999999998875   479999998 888877663    32   1222221121 22 11689999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHHhccCceeE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~~~~~W~~~  203 (235)
                      +++.+++      ++..++.++.|+|||||.+++.+. .+....+.++++...|++.
T Consensus       105 ~~~~~~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          105 VVGGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             EESCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             EECCchH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence            9987775      357999999999999999999875 3456666777776666544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.41  E-value=8e-13  Score=114.11  Aligned_cols=132  Identities=17%  Similarity=0.147  Sum_probs=84.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc-c-----cccccc-cCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI-G-----IYHDWC-EGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~-~-----~~~~~~-e~l~~~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.|+..|++.+.  ..|+++|.| +|+..+.++.-. .     .+...+ +.++.  ..||.+.+..+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v  112 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS  112 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence            356999999999999999998763  379999999 999987664210 0     111111 22331  11333333333


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh----------------------HHHHHHHHHHhccCceeEeec--CC
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEV----------------------DALNKVRKFAEGMRWDTKMMD--HE  208 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~----------------------~~~~~i~~~~~~~~W~~~~~~--~~  208 (235)
                      |.+      +..+|.|+.|+|||||.+++....                      .....+..+++...|.+...+  ..
T Consensus       113 ~~~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi  186 (232)
T 3opn_A          113 FIS------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI  186 (232)
T ss_dssp             SSC------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred             hhh------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence            432      268999999999999999987211                      124567777888888876332  22


Q ss_pred             CCCC-CCceEEEEEe
Q 026623          209 DGPL-MPEKILIAVK  222 (235)
Q Consensus       209 ~~~~-~~e~~l~~~k  222 (235)
                      .++. ..|-++.++|
T Consensus       187 ~g~~gn~e~l~~~~~  201 (232)
T 3opn_A          187 KGGAGNVEFLVHLLK  201 (232)
T ss_dssp             CBTTTBCCEEEEEEE
T ss_pred             CCCCCCHHHHHHHhh
Confidence            3333 4555666666

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.41  E-value=3.6e-13  Score=135.42  Aligned_cols=101  Identities=12%  Similarity=0.151  Sum_probs=81.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----------Cc--cccccccccCCCCCCCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----------GL--IGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----------gl--~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      ...+|||+|||+|.++..|++.+.....|+++|.+ .|+..+.+|          |+  +..++...+.+++.+++||+|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            46799999999999999999875223579999999 999988662          33  334566667788767999999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|..+|+|+++ .....++.|+.|+|||| .++|++
T Consensus       801 V~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          801 TCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             EEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             EEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99999999963 23446999999999999 777775

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.41  E-value=1.4e-12  Score=112.68  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCC-CC-CCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFS-TY-PRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~-~~-p~sFDlV~a~  150 (235)
                      +..+|||+|||+|.++..|+.++..  .|+++|.+ .++..+.++    ++   +..++...+.++ .+ +++||+|+++
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence            4679999999999999999987532  79999999 888876654    43   233343334443 23 5899999997


Q ss_pred             hhhccC-----C------------CCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          151 GVFSLY-----E------------NTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       151 ~vl~h~-----~------------~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      -.+.+.     .            ..+++..++.++.|+|||||.+++.-..+....+...++...|...
T Consensus       127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred             CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence            554322     1            1134578999999999999999998766666677777777778764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.40  E-value=5.1e-13  Score=121.14  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDl  146 (235)
                      +..+...+..+|||+|||+|.++..+++.+  ...|+++|.++++..+.++    |+   +..++...+.++ .+++||+
T Consensus        43 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~  119 (348)
T 2y1w_A           43 LQNHTDFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDI  119 (348)
T ss_dssp             HHTGGGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEE
T ss_pred             HhccccCCcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeE
Confidence            333444456799999999999999998875  3479999999777665543    44   334444445555 4578999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |++..+++|+.+ .++...+.++.|+|||||.+++.
T Consensus       120 Ivs~~~~~~~~~-~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          120 IISEPMGYMLFN-ERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEECCCBTTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEeCchhcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence            999999888743 46788999999999999999865

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.40  E-value=1.4e-12  Score=110.65  Aligned_cols=141  Identities=8%  Similarity=-0.014  Sum_probs=86.9

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC--c--cccccccccC----CCCCCCc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG--L--IGIYHDWCEG----FSTYPRT  143 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg--l--~~~~~~~~e~----l~~~p~s  143 (235)
                      +..+...+..+|||+|||+|.++..|++. +  ...|+++|.+ .++..+.++.  .  +..++..++.    +++ +++
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~  143 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANI-VEK  143 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT-SCC
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccccc-Ccc
Confidence            33333345679999999999999999875 3  2479999999 8888766542  1  2222333333    443 389


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe------Ch---H--HHHHHHHHHhccCceeEeecCCCCCC
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD------EV---D--ALNKVRKFAEGMRWDTKMMDHEDGPL  212 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d------~~---~--~~~~i~~~~~~~~W~~~~~~~~~~~~  212 (235)
                      ||+|+     +++++......+|.++.|+|||||.+++.-      ..   .  ....++ ++++..+++..........
T Consensus       144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~  217 (230)
T 1fbn_A          144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFE  217 (230)
T ss_dssp             EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTS
T ss_pred             EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCc
Confidence            99998     344332223778999999999999999951      00   0  124555 5555455544222111111


Q ss_pred             CCceEEEEEec
Q 026623          213 MPEKILIAVKQ  223 (235)
Q Consensus       213 ~~e~~l~~~k~  223 (235)
                      ..--+++++|+
T Consensus       218 ~~~~~v~~~k~  228 (230)
T 1fbn_A          218 KDHVMFVGIWE  228 (230)
T ss_dssp             TTEEEEEEEEC
T ss_pred             cceEEEEEEeC
Confidence            33456777763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.40  E-value=2e-13  Score=113.98  Aligned_cols=119  Identities=16%  Similarity=0.190  Sum_probs=81.8

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH--------HcCc--cccccccccCCCCCCCccceee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY--------ERGL--IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~--------~Rgl--~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      .+..+|||+|||+|.++..|++... ...|+++|.+ .|+..+.        .+++  +..++..++.+|+.+++ |.|+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            3467999999999999999987521 2579999999 8888532        1233  23445556678865555 5555


Q ss_pred             ---ehhhhc--cCCCCCChHHHHHHHhhhhcCCcEEEEEeC------------------hHH-HHHHHHHHhccCceeE
Q 026623          149 ---ANGVFS--LYENTCKPEDILLEMDRILRPEGAVIFRDE------------------VDA-LNKVRKFAEGMRWDTK  203 (235)
Q Consensus       149 ---a~~vl~--h~~~~~~~~~~L~Em~RVLRPGG~lii~d~------------------~~~-~~~i~~~~~~~~W~~~  203 (235)
                         +...++  |++   +...+|.|+.|+|||||.+++...                  ... .+.+...+..-.|++.
T Consensus       104 ~~~~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~  179 (218)
T 3mq2_A          104 VLMPWGSLLRGVLG---SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA  179 (218)
T ss_dssp             EESCCHHHHHHHHT---SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred             EEccchhhhhhhhc---cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence               333443  554   447999999999999999999731                  111 2336667777778765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.40  E-value=9.3e-13  Score=116.76  Aligned_cols=101  Identities=22%  Similarity=0.272  Sum_probs=75.5

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      .+..+|||+|||+|.++..|.+... ...++++|.+.+++.+.++    |+   +..........+ +++.||+|++.++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~v~~~~~  241 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVD-YGNDYDLVLLPNF  241 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSC-CCSCEEEEEEESC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCC-CCCCCcEEEEcch
Confidence            4567999999999999999987521 2479999999777766654    33   222332222233 4555999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+++ .+...+|.++.|+|||||+++|.|
T Consensus       242 l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          242 LHHFDV-ATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCH-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence            999842 356799999999999999999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.39  E-value=3.9e-13  Score=119.97  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=93.1

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccc-cccccCCCCCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIY-HDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~-~~~~e~l~~~p~sFDlV~a  149 (235)
                      ......+|||+|||+|.++..|.+... ...++++|.+.+++.+.++    |+   +... +|..+.   .|.+||+|++
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~p~~~D~v~~  241 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP---LPAGAGGYVL  241 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CCCSCSEEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC---CCCCCcEEEE
Confidence            334568999999999999999986421 2468889998888876654    43   2222 222222   3348999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh--H--------------------HHHHHHHHHhccCceeEeecC
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV--D--------------------ALNKVRKFAEGMRWDTKMMDH  207 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--~--------------------~~~~i~~~~~~~~W~~~~~~~  207 (235)
                      .++|||+++ .+...+|+++.|+|||||+++|.|..  +                    ...++++++++-.++......
T Consensus       242 ~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  320 (332)
T 3i53_A          242 SAVLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP  320 (332)
T ss_dssp             ESCGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ehhhccCCH-HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            999999853 23589999999999999999998741  0                    124466777777777653322


Q ss_pred             CCCCCCCceEEEEEe
Q 026623          208 EDGPLMPEKILIAVK  222 (235)
Q Consensus       208 ~~~~~~~e~~l~~~k  222 (235)
                      ..   . ..++.++|
T Consensus       321 ~~---~-~~vie~r~  331 (332)
T 3i53_A          321 IS---Y-VSIVEMTA  331 (332)
T ss_dssp             CS---S-SEEEEEEE
T ss_pred             CC---C-cEEEEEee
Confidence            21   1 56777765

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.39  E-value=5.4e-13  Score=115.01  Aligned_cols=116  Identities=15%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----------Cc--cccccccccC-CC--CCCCcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----------GL--IGIYHDWCEG-FS--TYPRTY  144 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----------gl--~~~~~~~~e~-l~--~~p~sF  144 (235)
                      ...+|||+|||+|.++..|+.... ..+++++|.+ .|+..+.++          ++  +..++..+.. ++  +.+++|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            356899999999999999987521 2479999999 898876542          33  2233444443 44  345999


Q ss_pred             ceeeehhhhccC-----CCCCChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHHHhc
Q 026623          145 DLIHANGVFSLY-----ENTCKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKFAEG  197 (235)
Q Consensus       145 DlV~a~~vl~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~~~~  197 (235)
                      |.|+++..-.+.     ..+.....+|.++.|+|||||.|++. |...+...+...+..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~  183 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE  183 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            999874332211     11112258999999999999999986 555555544444333

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.38  E-value=4.1e-13  Score=111.33  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=74.5

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      .+...+..+|||+|||+|.++..|++.+   .+|+++|.+ .+++.+.++    |+  +...+......+..+++||+|+
T Consensus        72 ~l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~  148 (210)
T 3lbf_A           72 LLELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAII  148 (210)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             hcCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEE
Confidence            3444557899999999999999998763   479999999 888877665    33  2233333333333348999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ++.+++|+++         ++.|+|||||++++....
T Consensus       149 ~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             EccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            9999998863         689999999999998654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.38  E-value=1.6e-12  Score=117.34  Aligned_cols=142  Identities=20%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Ccc---ccc-cccccCCCCCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GLI---GIY-HDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl~---~~~-~~~~e~l~~~p~sFDlV~a  149 (235)
                      ......+|||+|||+|.++..|.+... ...++++|.+.++..+.++    |+.   ... .|..+.   .|..||+|++
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~~  254 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP---LPVTADVVLL  254 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSCCEEEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCc---CCCCCCEEEE
Confidence            334567999999999999999987521 2478999987777776553    332   222 222222   3445999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC--h--H-----------------------HHHHHHHHHhccCcee
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE--V--D-----------------------ALNKVRKFAEGMRWDT  202 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~--~--~-----------------------~~~~i~~~~~~~~W~~  202 (235)
                      +.+|||+++ .+...+|.++.|+|||||+++|.|.  .  +                       ...++.++++.-.+++
T Consensus       255 ~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~  333 (374)
T 1qzz_A          255 SFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL  333 (374)
T ss_dssp             ESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred             eccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            999999853 2235899999999999999999876  2  1                       1234566677777776


Q ss_pred             EeecCCCCCC--CCceEEEEEecc
Q 026623          203 KMMDHEDGPL--MPEKILIAVKQY  224 (235)
Q Consensus       203 ~~~~~~~~~~--~~e~~l~~~k~~  224 (235)
                      .......+..  ....++.++|.=
T Consensus       334 ~~~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          334 ASERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEECC
T ss_pred             EEEEECCCCcccCCcEEEEEEECc
Confidence            5322221211  122788888853

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.38  E-value=2.6e-13  Score=127.57  Aligned_cols=125  Identities=12%  Similarity=0.021  Sum_probs=85.9

Q ss_pred             cccccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc-
Q 026623           48 VEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER-  124 (235)
Q Consensus        48 ~~g~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R-  124 (235)
                      ...++.+.|-+-..   .   .+..++..++.....+|||+|||+|.++..++.. +  ...|+|+|++ .++.++.+. 
T Consensus       146 Ye~Fs~~vYGEt~~---~---~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g--~~kVvGIDiS~~~lelAr~n~  217 (438)
T 3uwp_A          146 YEPFSPEVYGETSF---D---LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMD  217 (438)
T ss_dssp             CSSSCGGGGGGTHH---H---HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC--CSEEEEEECCHHHHHHHHHHH
T ss_pred             cccCCCcccCCCCH---H---HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHH
Confidence            34455555543332   2   2344555555556789999999999998888753 3  2369999999 888876541 


Q ss_pred             ----------Cc----cccccccccCCCCCC--CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          125 ----------GL----IGIYHDWCEGFSTYP--RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       125 ----------gl----~~~~~~~~e~l~~~p--~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                                |+    +..++.....+++.+  ..||+|+++.++. .   .++...|.|+.|+|||||.||+.+.
T Consensus       218 e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~---pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          218 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-G---PEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             HHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-C---HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             HHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEccccc-C---chHHHHHHHHHHcCCCCcEEEEeec
Confidence                      33    334454444455322  5899999987763 2   3778999999999999999999964

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.37  E-value=3.4e-13  Score=114.97  Aligned_cols=115  Identities=7%  Similarity=0.050  Sum_probs=77.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CC--CCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FS--TYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~--~~p~sFDlV~a~  150 (235)
                      ....|||+|||+|.++..|+.... ..+|+++|.+ .++..+.++    |+  +..+...++. ++  +.+++||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            356899999999999999986421 2479999999 888876554    44  2233333333 33  345999999986


Q ss_pred             hhhccCCC-----CCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHHh
Q 026623          151 GVFSLYEN-----TCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFAE  196 (235)
Q Consensus       151 ~vl~h~~~-----~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~~  196 (235)
                      +...+...     +-....++.++.|+|||||.|++... ..+.+.+...+.
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~  164 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS  164 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence            44332211     11113699999999999999999865 445555555543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.37  E-value=1.7e-13  Score=120.90  Aligned_cols=135  Identities=11%  Similarity=-0.001  Sum_probs=80.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCc--------cccc--cccccCCCCCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL--------IGIY--HDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl--------~~~~--~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+|||+|||+|+++..+++.    ..|+++|.+.|+..+.++..        +..+  ....+.++  +++||+|+|+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd  147 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD  147 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence            4679999999999999999886    25899999865432222221        1122  22333343  6899999998


Q ss_pred             hhhccCCCCC-Ch---HHHHHHHhhhhcCCc--EEEEEeChH----HHHHHHHHHhccCceeEeecCCCCCCCCceEEEE
Q 026623          151 GVFSLYENTC-KP---EDILLEMDRILRPEG--AVIFRDEVD----ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       151 ~vl~h~~~~~-~~---~~~L~Em~RVLRPGG--~lii~d~~~----~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~  220 (235)
                      .+ ++..+.. +.   ..+|.++.|+|||||  .|++....+    +++.++.+.+.+. .+.....-+-....|.+++|
T Consensus       148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~  225 (265)
T 2oxt_A          148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTS  225 (265)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEES
T ss_pred             Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEe
Confidence            77 4332110 11   138999999999999  999975322    2233333333222 22222222222357888888


Q ss_pred             Eec
Q 026623          221 VKQ  223 (235)
Q Consensus       221 ~k~  223 (235)
                      .++
T Consensus       226 ~~~  228 (265)
T 2oxt_A          226 RAG  228 (265)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            553

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.37  E-value=5.9e-14  Score=131.47  Aligned_cols=137  Identities=10%  Similarity=0.111  Sum_probs=93.5

Q ss_pred             ccccchHH-HHHHHHHHHHHhhhhCCCCCceEeeeccc------cchHHHHHhcC--CCceeEEeecCcc-ccHHHHHHc
Q 026623           55 SYQEDSKL-WKKHVNAYKKMNSLIGTRRYRNVMDMNAG------LGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYER  124 (235)
Q Consensus        55 ~f~~d~~~-W~~~v~~y~~~l~~l~~~~~r~VLD~GCG------~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~R  124 (235)
                      .|..|... |......|.+.+..+... ..+|||+|||      +|+.+..+...  +  ...|+++|++ .|.   ...
T Consensus       190 ~Y~tDK~~~~h~y~~~Ye~lL~~l~~~-~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP--~a~V~GVDiSp~m~---~~~  263 (419)
T 3sso_A          190 RYFTPKFGFLHWFTPHYDRHFRDYRNQ-QVRVLEIGVGGYKHPEWGGGSLRMWKSFFP--RGQIYGLDIMDKSH---VDE  263 (419)
T ss_dssp             HTTCTTBSSSCBCHHHHHHHHGGGTTS-CCEEEEECCSCTTCSSCCCHHHHHHHHHCT--TCEEEEEESSCCGG---GCB
T ss_pred             HhCCCcccccchHHHHHHHHHHhhcCC-CCEEEEEecCCCcCCCCCHHHHHHHHHhCC--CCEEEEEECCHHHh---hcC
Confidence            45444333 223345677777656543 5799999999      77766666542  2  2479999999 663   122


Q ss_pred             CccccccccccCCCCC------CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------------
Q 026623          125 GLIGIYHDWCEGFSTY------PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------------  185 (235)
Q Consensus       125 gl~~~~~~~~e~l~~~------p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------------  185 (235)
                      .-+..+...++.+++.      +++||+|+|+.. ++.   .+...+|.|+.|+|||||+++|.|..             
T Consensus       264 ~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~---~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~  339 (419)
T 3sso_A          264 LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN---AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADP  339 (419)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH---HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSST
T ss_pred             CCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc---hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccC
Confidence            2244455556667765      589999998643 433   36789999999999999999998622             


Q ss_pred             -----HHHHHHHHHHhccCce
Q 026623          186 -----DALNKVRKFAEGMRWD  201 (235)
Q Consensus       186 -----~~~~~i~~~~~~~~W~  201 (235)
                           .+++.++++...+.|.
T Consensus       340 ~~~~~tii~~lk~l~D~l~~~  360 (419)
T 3sso_A          340 QECSGTSLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             TCCTTSHHHHHHHHHHHHTGG
T ss_pred             CcchhHHHHHHHHHHHHhccc
Confidence                 2477788888887775

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.37  E-value=1.1e-12  Score=112.77  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=72.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      +..+|||+|||+|.++..|++.-. ..+|+++|.+ .++..+.+++. +.......+.+++.+++||+|+++.+.     
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            467999999999999999987610 2379999999 99999888763 223344445677666899999985442     


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                           .++.|+.|+|||||.+++.+..
T Consensus       159 -----~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          159 -----CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----hhHHHHHHhcCCCcEEEEEEcC
Confidence                 3589999999999999998743

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.37  E-value=2.8e-12  Score=110.53  Aligned_cols=136  Identities=15%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCCCCC--Cccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFSTYP--RTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~~~p--~sFDlV~a  149 (235)
                      +..+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+.   ......+ +.++..+  ++||+|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            35799999999999999998751112479999999 888877665    442   2222222 2244443  59999998


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH------------HHHHHHHH----HhccCceeEeecCCCCCCC
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD------------ALNKVRKF----AEGMRWDTKMMDHEDGPLM  213 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~------------~~~~i~~~----~~~~~W~~~~~~~~~~~~~  213 (235)
                      ....      .+...+|.++.|+|||||++++.+...            ....++++    ...-+|.......- +...
T Consensus       143 d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~  215 (248)
T 3tfw_A          143 DADK------PNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTKG  215 (248)
T ss_dssp             CSCG------GGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STTC
T ss_pred             CCch------HHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCCC
Confidence            5532      245689999999999999999986321            12223333    34456766544222 2224


Q ss_pred             CceEEEEEec
Q 026623          214 PEKILIAVKQ  223 (235)
Q Consensus       214 ~e~~l~~~k~  223 (235)
                      .+.+.+++|+
T Consensus       216 ~DG~~i~~~~  225 (248)
T 3tfw_A          216 WDGFTLAWVN  225 (248)
T ss_dssp             SEEEEEEEEC
T ss_pred             CCeeEEEEEe
Confidence            5789999987

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.37  E-value=3.8e-13  Score=120.63  Aligned_cols=144  Identities=13%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             HhhhhCCCC-CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCC-CCCCc
Q 026623           73 MNSLIGTRR-YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFS-TYPRT  143 (235)
Q Consensus        73 ~l~~l~~~~-~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~-~~p~s  143 (235)
                      ++..+.... ..+|||+|||+|.++..|.+... ...++++|.+.++..+.++    ++   +..........+ +.++.
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  248 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA  248 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence            444444444 78999999999999999987421 2468899998888766553    43   222222222222 24578


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------HH--------------------HHHHHHHHh
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------DA--------------------LNKVRKFAE  196 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------~~--------------------~~~i~~~~~  196 (235)
                      ||+|+++.+|||+++ .+...+|.++.|+|||||.++|.|..       ..                    ...++++++
T Consensus       249 ~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  327 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVR  327 (352)
T ss_dssp             EEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHH
T ss_pred             ccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHH
Confidence            999999999999853 34589999999999999999998620       10                    233566666


Q ss_pred             ccCceeEeecCCCCCCCCceEEEEEec
Q 026623          197 GMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       197 ~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      .-.+++.....     +...+++++|+
T Consensus       328 ~aGf~~~~~~~-----g~~~l~~a~kp  349 (352)
T 3mcz_A          328 DAGLAVGERSI-----GRYTLLIGQRS  349 (352)
T ss_dssp             HTTCEEEEEEE-----TTEEEEEEECC
T ss_pred             HCCCceeeecc-----CceEEEEEecC
Confidence            66777654211     34678888885

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=109.31  Aligned_cols=138  Identities=12%  Similarity=0.051  Sum_probs=84.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHH----HHHHcCccccccccccC---CCCCCCcccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLG----VIYERGLIGIYHDWCEG---FSTYPRTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~~~~~~e~---l~~~p~sFDlV  147 (235)
                      +......+|||+|||+|.++..|++. +. ...|+++|.+ .++.    .+.++..+..++...+.   +++.+++||+|
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~-~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGP-DGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEE
Confidence            33344679999999999999999875 11 1369999998 6544    34443223233333333   34345899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-----------HHHHHHHHHhccCceeEe-ecCCCCCCCCc
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-----------ALNKVRKFAEGMRWDTKM-MDHEDGPLMPE  215 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-----------~~~~i~~~~~~~~W~~~~-~~~~~~~~~~e  215 (235)
                      +++..     .......++.++.|+|||||.++++-...           +... .+++++..|++.. ...+.-+ ...
T Consensus       152 ~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~~-~~~  224 (233)
T 2ipx_A          152 FADVA-----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPYE-RDH  224 (233)
T ss_dssp             EECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTTS-SSE
T ss_pred             EEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCcc-CCc
Confidence            98443     11123456889999999999999974331           1122 3556666777653 2222222 334


Q ss_pred             eEEEEEe
Q 026623          216 KILIAVK  222 (235)
Q Consensus       216 ~~l~~~k  222 (235)
                      -+++++|
T Consensus       225 ~~v~~~~  231 (233)
T 2ipx_A          225 AVVVGVY  231 (233)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5566655

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.36  E-value=5.8e-13  Score=111.95  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=74.1

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..+...+..+|||+|||+|.++..|...+   .+|+++|.+ .++..+.++.    .+...+...+.....+++||+|+
T Consensus        63 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  139 (231)
T 1vbf_A           63 LDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVV  139 (231)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEE
Confidence            333444456799999999999999998764   479999999 8888877762    12223322232121348999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ++.+++|+.         .++.|+|||||.+++....
T Consensus       140 ~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          140 VWATAPTLL---------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             ESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             ECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence            999998874         3799999999999999754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.36  E-value=9.2e-13  Score=114.29  Aligned_cols=115  Identities=19%  Similarity=0.174  Sum_probs=85.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      +..+|||+|||+|.++.++++.+.   .|+++|.+ .++..+.++    |+ +...+..... ++.+++||+|+++...+
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHH
Confidence            357999999999999999988763   79999999 888877664    33 2222211111 11248999999987665


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEee
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~  205 (235)
                      +      +..++.++.|+|||||++++++.. .....+.+.++...+++...
T Consensus       196 ~------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          196 L------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             H------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             H------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence            3      468999999999999999998643 34667778888777877543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.35  E-value=7.2e-13  Score=113.05  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=101.4

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc-ccc-ccccCCCCCCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG-IYH-DWCEGFSTYPR  142 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~-~~~-~~~e~l~~~p~  142 (235)
                      |......+..  ..+|||+|||+|.++..+.....-+ .++++|++ .|++++.++    |+.. ..+ +..+  ...+.
T Consensus        40 Y~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~--~~~~~  114 (200)
T 3fzg_A           40 YTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES--DVYKG  114 (200)
T ss_dssp             HHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH--HHTTS
T ss_pred             HHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc--cCCCC
Confidence            5544444533  5699999999999999997753334 89999999 999987765    3331 111 1111  12459


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-----------HHHHHHHHHHhccCceeEeecCCCCC
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-----------DALNKVRKFAEGMRWDTKMMDHEDGP  211 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-----------~~~~~i~~~~~~~~W~~~~~~~~~~~  211 (235)
                      +||+|.+..++||++   +...++.++.+.|||||.||-.+..           .+-..+++.+.+=.|.+......   
T Consensus       115 ~~DvVLa~k~LHlL~---~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~---  188 (200)
T 3fzg_A          115 TYDVVFLLKMLPVLK---QQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG---  188 (200)
T ss_dssp             EEEEEEEETCHHHHH---HTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET---
T ss_pred             CcChhhHhhHHHhhh---hhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC---
Confidence            999999999999994   3457788999999999999999721           13566788888889988765443   


Q ss_pred             CCCceEEEEEe
Q 026623          212 LMPEKILIAVK  222 (235)
Q Consensus       212 ~~~e~~l~~~k  222 (235)
                        .|-+.+.+|
T Consensus       189 --nEl~y~~~~  197 (200)
T 3fzg_A          189 --NELVYITSG  197 (200)
T ss_dssp             --TEEEEEECC
T ss_pred             --ceEEEEEec
Confidence              566666665

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.35  E-value=4.8e-13  Score=111.79  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc----cccccccccCC-CCC-CCc-cceeee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL----IGIYHDWCEGF-STY-PRT-YDLIHA  149 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl----~~~~~~~~e~l-~~~-p~s-FDlV~a  149 (235)
                      ..+|||+|||+|.++..++..+.  ..|+++|.+ .+++.+.++    |+    +..+...++.+ +.. +++ ||+|++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            46899999999999998766652  479999999 899877664    33    22233333332 322 478 999999


Q ss_pred             hhhhccCCCCCChHHHHHHH--hhhhcCCcEEEEEeChH
Q 026623          150 NGVFSLYENTCKPEDILLEM--DRILRPEGAVIFRDEVD  186 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em--~RVLRPGG~lii~d~~~  186 (235)
                      +..|+ .   .+...++.++  .|+|||||.+++.....
T Consensus       132 ~~~~~-~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFH-F---NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCCSS-S---CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCC-C---ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            87754 2   3577899999  78999999999987653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.35  E-value=2.5e-12  Score=107.41  Aligned_cols=135  Identities=12%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCC-------CC----Cccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFST-------YP----RTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~-------~p----~sFDlV~a  149 (235)
                      +..+|||+|||+|+++..|++++   ..|+++|.+.+...   .+ +..+.......++       ++    ++||+|++
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~~~---~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls   97 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEMEEI---AG-VRFIRCDIFKETIFDDIDRALREEGIEKVDDVVS   97 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCCCC---TT-CEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccccC---CC-eEEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence            46799999999999999999873   47999999843211   12 1122222222221       11    49999999


Q ss_pred             hhhhc--------cCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCcee-EeecCC-CCCCCCceEE
Q 026623          150 NGVFS--------LYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDT-KMMDHE-DGPLMPEKIL  218 (235)
Q Consensus       150 ~~vl~--------h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~-~~~~~~-~~~~~~e~~l  218 (235)
                      +....        |.......+.+|.++.|+|||||.|++.... +....+...++.. +.. ...... +-+...|.++
T Consensus        98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~  176 (191)
T 3dou_A           98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI  176 (191)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred             CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence            65321        1110012357899999999999999987532 2223444444443 333 232221 2223689999


Q ss_pred             EEEec
Q 026623          219 IAVKQ  223 (235)
Q Consensus       219 ~~~k~  223 (235)
                      ||++.
T Consensus       177 v~~~~  181 (191)
T 3dou_A          177 MFFGF  181 (191)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.34  E-value=1.7e-12  Score=115.58  Aligned_cols=102  Identities=15%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +.... .+|||+|||+|.++..|.+... ...++++|.+.++..+.++    |+   +......... + +|++||+|++
T Consensus       164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~D~v~~  239 (334)
T 2ip2_A          164 LDFRG-RSFVDVGGGSGELTKAILQAEP-SARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-VPSNGDIYLL  239 (334)
T ss_dssp             SCCTT-CEEEEETCTTCHHHHHHHHHCT-TCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-CCSSCSEEEE
T ss_pred             CCCCC-CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-CCCCCCEEEE
Confidence            34444 7999999999999999986521 2378999998888877654    22   2222222221 2 4578999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..+|||+++ .+...+|.++.|+|||||+++|.|
T Consensus       240 ~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          240 SRIIGDLDE-AASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             ESCGGGCCH-HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999998852 234599999999999999999996

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.34  E-value=1.3e-12  Score=115.77  Aligned_cols=96  Identities=15%  Similarity=0.055  Sum_probs=66.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCc--------cccc--cccccCCCCCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL--------IGIY--HDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl--------~~~~--~~~~e~l~~~p~sFDlV~a~  150 (235)
                      +..+|||+|||+|+++..|+++    ..|+++|.+.|+..+.++..        +..+  ....+.++  +++||+|+|+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd  155 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD  155 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence            4679999999999999999887    25899999876433322221        1222  33344454  6899999998


Q ss_pred             hhhccCCCCC-Ch---HHHHHHHhhhhcCCc--EEEEEe
Q 026623          151 GVFSLYENTC-KP---EDILLEMDRILRPEG--AVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~-~~---~~~L~Em~RVLRPGG--~lii~d  183 (235)
                      .+ ++..+.. +.   ..+|.++.|+|||||  .|++..
T Consensus       156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            77 4332110 11   147999999999999  999875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.33  E-value=5.1e-13  Score=107.92  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccC-CCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEG-FSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~-l~~~p~sFDlV~a~~  151 (235)
                      ...+|||+|||+|.++..++..+  ...|+++|.+ .+++.+.++    |+   +..++..+.. ++..+++||+|+++.
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            45699999999999999998875  3479999999 888877654    32   1222222222 344457899999987


Q ss_pred             hhccCCCCCChHHHHHHHh--hhhcCCcEEEEEeCh
Q 026623          152 VFSLYENTCKPEDILLEMD--RILRPEGAVIFRDEV  185 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~--RVLRPGG~lii~d~~  185 (235)
                      .+++    .....++.++.  |+|||||.+++....
T Consensus       109 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          109 PYAK----ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            7642    13467777776  999999999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.33  E-value=1.6e-12  Score=111.30  Aligned_cols=98  Identities=15%  Similarity=0.102  Sum_probs=65.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-c-cHHHH---HHc----Cc--cccccccccCCCC-CCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-N-TLGVI---YER----GL--IGIYHDWCEGFST-YPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~-~L~~~---~~R----gl--~~~~~~~~e~l~~-~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..|+.... ...|+++|.| . |++.+   .++    |+  +......++.+|. +.+.||.|+
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            467999999999999999985321 3579999999 4 55544   433    43  2234445566653 125666666


Q ss_pred             ehhhh----ccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623          149 ANGVF----SLYENTCKPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       149 a~~vl----~h~~~~~~~~~~L~Em~RVLRPGG~lii  181 (235)
                      ++..+    +|..  .+...+|.|+.|+|||||.+++
T Consensus       103 ~~~~~~~~~~~~~--~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          103 ILFPWGTLLEYVI--KPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EESCCHHHHHHHH--TTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EeCCCcHHhhhhh--cchHHHHHHHHHhcCCCcEEEE
Confidence            54322    1211  2346899999999999999999

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.33  E-value=1.1e-12  Score=118.26  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=72.4

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHH--HHcCcc---ccccccccCCCCCCCccceee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVI--YERGLI---GIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~--~~Rgl~---~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..+......+|||+|||+|.++..|++... ...++++|.+.++...  .+.++.   .......  +...| +||+|+
T Consensus       177 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~--~~~~p-~~D~v~  252 (348)
T 3lst_A          177 ARAGDFPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF--LREVP-HADVHV  252 (348)
T ss_dssp             HHHSCCCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT--TTCCC-CCSEEE
T ss_pred             HHhCCccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecCHHHhhcccccccCCCCCeEEEecCC--CCCCC-CCcEEE
Confidence            3344555678999999999999999987422 2468899997544410  001221   1121111  12234 999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.++|||+++ .+...+|+++.|+|||||.++|.|
T Consensus       253 ~~~vlh~~~d-~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          253 LKRILHNWGD-EDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EehhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999853 233699999999999999999986

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.33  E-value=1.8e-12  Score=113.98  Aligned_cols=113  Identities=15%  Similarity=0.231  Sum_probs=86.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.|+..++..+.-  .|+++|.+ .+++.+.++    |+..   .++..+..++. +++||+|+++.. 
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-  201 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-  201 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-
Confidence            579999999999999999876532  69999999 888876654    4422   34444455553 689999998433 


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------HHHHHHHHHHhccCceeEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------DALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------~~~~~i~~~~~~~~W~~~~  204 (235)
                            .....++.++.|+|||||.+++.+..       +....+.+.++...|.+..
T Consensus       202 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          202 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ------hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence                  23468999999999999999997643       3467788888888888765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.32  E-value=3.5e-12  Score=115.08  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Ccc---ccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GLI---GIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl~---~~~~~~~e~l~~~p~sFDl  146 (235)
                      +..+......+|||+|||+|.++..|.+... ...++++|.+.+++.+.++    |+.   ..........+ ++ .+|+
T Consensus       183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~D~  259 (359)
T 1x19_A          183 LEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP-EADA  259 (359)
T ss_dssp             HHHCCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-CC-CCSE
T ss_pred             HHhcCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCC-CC-CCCE
Confidence            3344445578999999999999999987521 2478999998888877654    442   22222223233 23 3499


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+++.+|||+++ .+...+|.++.|+|||||.++|.|
T Consensus       260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999999999853 237899999999999999999987

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.32  E-value=2e-12  Score=110.87  Aligned_cols=111  Identities=13%  Similarity=0.103  Sum_probs=75.2

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcC--CCceeEEeecCcc-ccHHHHHHc-------Cc-----------------
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYER-------GL-----------------  126 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~R-------gl-----------------  126 (235)
                      +..+......+|||+|||+|.++..|+..  . ...+|+++|++ .+++.+.++       |+                 
T Consensus        44 l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (250)
T 1o9g_A           44 LARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP  122 (250)
T ss_dssp             HHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence            33343334579999999999999988764  1 13589999999 888876642       22                 


Q ss_pred             -----------cc-------------ccc-ccccCCCC----CCCccceeeehhhhccCCCC------CChHHHHHHHhh
Q 026623          127 -----------IG-------------IYH-DWCEGFST----YPRTYDLIHANGVFSLYENT------CKPEDILLEMDR  171 (235)
Q Consensus       127 -----------~~-------------~~~-~~~e~l~~----~p~sFDlV~a~~vl~h~~~~------~~~~~~L~Em~R  171 (235)
                                 +.             ..+ |..+.++.    ..++||+|+|+..+.+..+.      .....++.++.|
T Consensus       123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~  202 (250)
T 1o9g_A          123 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS  202 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence                       11             222 21221110    22589999998877654322      234699999999


Q ss_pred             hhcCCcEEEEEeCh
Q 026623          172 ILRPEGAVIFRDEV  185 (235)
Q Consensus       172 VLRPGG~lii~d~~  185 (235)
                      +|||||++++.++.
T Consensus       203 ~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          203 ALPAHAVIAVTDRS  216 (250)
T ss_dssp             HSCTTCEEEEEESS
T ss_pred             hcCCCcEEEEeCcc
Confidence            99999999997654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.32  E-value=4.2e-12  Score=108.11  Aligned_cols=95  Identities=15%  Similarity=0.280  Sum_probs=71.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCC-CCCCccceeeeh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFS-TYPRTYDLIHAN  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~-~~p~sFDlV~a~  150 (235)
                      +..+|||+|||+|.++..|+.... ...|+++|.+ .++..+.++    |+   +..++..+ +.++ ..+++||+|++.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            357999999999999999988421 3579999999 888876654    43   23333333 3334 446899999976


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ...      .....++.++.|+|||||++++.
T Consensus       150 ~~~------~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          150 AAK------AQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             TTS------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CcH------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            432      35678999999999999999995

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.32  E-value=5e-12  Score=109.87  Aligned_cols=141  Identities=11%  Similarity=0.018  Sum_probs=82.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCccccccccccCCC---CCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGLIGIYHDWCEGFS---TYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~~~~~~e~l~---~~p~sFDlV~  148 (235)
                      +...+..+|||+|||+|+++..|++.-.-...|+++|.+ .|+.    .+.+|..+..+........   ..+++||+|+
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence            335567899999999999998887631002369999999 7753    3445543333332222221   1247999999


Q ss_pred             ehhhhccCCCCCChHHHHH-HHhhhhcCCcEEEEEeCh----------HHHHHHHHHHhccCceeE-eecCCCCCCCCce
Q 026623          149 ANGVFSLYENTCKPEDILL-EMDRILRPEGAVIFRDEV----------DALNKVRKFAEGMRWDTK-MMDHEDGPLMPEK  216 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~-Em~RVLRPGG~lii~d~~----------~~~~~i~~~~~~~~W~~~-~~~~~~~~~~~e~  216 (235)
                      ++..+      .+...+|. .+.|+|||||.|+++-..          +....+...+++-..++. ..+.+.- ..+.-
T Consensus       152 ~d~a~------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~-~~~h~  224 (232)
T 3id6_C          152 VDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPY-DKDHA  224 (232)
T ss_dssp             ECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTT-CSSCE
T ss_pred             ecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCC-cCceE
Confidence            87543      24455554 556699999999987311          112223334444345544 2222211 14567


Q ss_pred             EEEEEecc
Q 026623          217 ILIAVKQY  224 (235)
Q Consensus       217 ~l~~~k~~  224 (235)
                      +++++|++
T Consensus       225 ~v~~~~~~  232 (232)
T 3id6_C          225 IVLSKYKG  232 (232)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEeCC
Confidence            77888763

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.31  E-value=1.9e-11  Score=106.35  Aligned_cols=123  Identities=11%  Similarity=0.055  Sum_probs=84.1

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------c---cccccccccCC-------CC
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------L---IGIYHDWCEGF-------ST  139 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------l---~~~~~~~~e~l-------~~  139 (235)
                      ......+|||+|||+|.++..|+.+.. ...|+++|.+ .++..+.++-       +   +..++.....+       ++
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~  111 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL  111 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence            333467999999999999998887531 2579999999 8888776642       2   22334333333       12


Q ss_pred             CCCccceeeehhhhcc---------------CCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCcee
Q 026623          140 YPRTYDLIHANGVFSL---------------YENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h---------------~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~  202 (235)
                      .+++||+|+++--+..               ....+.++.++.++.|+|||||.|++.-..+....+...++.- |..
T Consensus       112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~  188 (260)
T 2ozv_A          112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG  188 (260)
T ss_dssp             CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred             CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence            3589999999733221               1123468899999999999999999987666666666666653 653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.31  E-value=5.8e-12  Score=107.09  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc-----Cc--cccccccccCCCCCCCcccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER-----GL--IGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R-----gl--~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      +...+..+|||+|||+|.++..|+.. +. ...|+++|.+ .++..+.++     |.  +...+.....+++.+++||+|
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v  170 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVGE-KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGV  170 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEE
Confidence            44445679999999999999998875 21 2379999998 888877665     42  223333334455445899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCce
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWD  201 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~  201 (235)
                      ++     +.   .+...+|.++.|+|||||.+++.+... ...++...++...|.
T Consensus       171 ~~-----~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~  217 (258)
T 2pwy_A          171 AL-----DL---MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR  217 (258)
T ss_dssp             EE-----ES---SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred             EE-----CC---cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            97     22   256689999999999999999998653 444555555555444

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.31  E-value=2.3e-12  Score=116.36  Aligned_cols=102  Identities=16%  Similarity=0.229  Sum_probs=75.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc-cccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG-IYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~-~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ...+|||+|||+|.++..++..+. ...|+++|.+ .++..+.++    ++.. .+..  +.+++.+++||+|+++..||
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~--d~~~~~~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVEGEVFAS--NVFSEVKGRFDMIISNPPFH  272 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEEC--STTTTCCSCEEEEEECCCCC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEc--cccccccCCeeEEEECCCcc
Confidence            356899999999999999987532 1369999999 888877664    3321 2222  22343468999999999998


Q ss_pred             cCC--CCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          155 LYE--NTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       155 h~~--~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +..  +..+...++.++.|+|||||.+++..+.
T Consensus       273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            521  1124679999999999999999998643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.31  E-value=4.2e-12  Score=115.59  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=95.3

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccc-cccccCCCCCCCcccee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIY-HDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~-~~~~e~l~~~p~sFDlV  147 (235)
                      .+......+|||+|||+|.++..|++... ...++++|.+.+++.+.++    |+   +... .|..+   .+|..||+|
T Consensus       197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~p~~~D~v  272 (369)
T 3gwz_A          197 AYDFSGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFE---TIPDGADVY  272 (369)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTT---CCCSSCSEE
T ss_pred             hCCCccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCC---CCCCCceEE
Confidence            34445678999999999999999987521 2468999998777766553    43   2222 22222   234589999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh------------H------------HHHHHHHHHhccCceeE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV------------D------------ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~------------~------------~~~~i~~~~~~~~W~~~  203 (235)
                      ++..+|||+++ .+...+|+++.|+|||||+++|.|..            +            ...+++++++.-.|+..
T Consensus       273 ~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  351 (369)
T 3gwz_A          273 LIKHVLHDWDD-DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVE  351 (369)
T ss_dssp             EEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEE
T ss_pred             EhhhhhccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEE
Confidence            99999998852 23348999999999999999998621            0            03456777777788876


Q ss_pred             eecCCCCCCCCceEEEEEe
Q 026623          204 MMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       204 ~~~~~~~~~~~e~~l~~~k  222 (235)
                      .......  ....++.|+|
T Consensus       352 ~~~~~~~--~~~svie~~~  368 (369)
T 3gwz_A          352 RSLPCGA--GPVRIVEIRR  368 (369)
T ss_dssp             EEEECSS--SSEEEEEEEE
T ss_pred             EEEECCC--CCcEEEEEEe
Confidence            4332111  3456777776

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.30  E-value=2.3e-12  Score=110.84  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=86.4

Q ss_pred             CceEeeeccccchHHHHHhcC----CCceeEEeecCcc-ccHHHHHHcC-ccccccccccC---CCCCC-Cccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESP----KSWVMNVVPTTAK-NTLGVIYERG-LIGIYHDWCEG---FSTYP-RTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~----~~~~~~V~~~D~s-~~L~~~~~Rg-l~~~~~~~~e~---l~~~p-~sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++..|++.    +. ...|+++|.+ .++..+...+ -+..++..+..   ++..+ .+||+|++..
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~-~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGI-DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTC-CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCC-CCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            469999999999999998764    11 2479999999 8877654211 13333443444   34444 4799999865


Q ss_pred             hhccCCCCCChHHHHHHHhh-hhcCCcEEEEEeChHH-----HHHHHHHHhcc--CceeEeecCCCCCCCCceEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDR-ILRPEGAVIFRDEVDA-----LNKVRKFAEGM--RWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~R-VLRPGG~lii~d~~~~-----~~~i~~~~~~~--~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      .  |.    ++..+|.|+.| +|||||++++.|....     -..+.++++..  .+++...........++.++...+
T Consensus       161 ~--~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~g~~~~~~  233 (236)
T 2bm8_A          161 A--HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA  233 (236)
T ss_dssp             S--CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETTTTTSCTTTTTCEEEECC
T ss_pred             c--hH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcchhhcccccccchHhhhcc
Confidence            4  32    67899999998 9999999999874221     23566776666  576643221111223455555443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.30  E-value=5.7e-14  Score=119.08  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=74.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      ...+|||+|||+|.++..|+..+   ..|+++|.+ .++..+.++    |+   +..++...+.++ .+++||+|+++..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~  153 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP  153 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC
T ss_pred             CCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC
Confidence            35799999999999999999875   479999999 888876654    33   233343334444 3489999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++|..   +....+.|+.|+|||||.+++..
T Consensus       154 ~~~~~---~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          154 WGGPD---YATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CSSGG---GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             cCCcc---hhhhHHHHHHhhcCCcceeHHHH
Confidence            98864   33457889999999999977764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.30  E-value=1.4e-12  Score=115.84  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             CceEeeeccccch----HHHHHhcC-CCc--eeEEeecCcc-ccHHHHHHcCc---------------------------
Q 026623           82 YRNVMDMNAGLGG----FAAALESP-KSW--VMNVVPTTAK-NTLGVIYERGL---------------------------  126 (235)
Q Consensus        82 ~r~VLD~GCG~G~----faa~L~~~-~~~--~~~V~~~D~s-~~L~~~~~Rgl---------------------------  126 (235)
                      ..+|||+|||+|.    +|..|.+. +..  ...|+++|+| +||..|.+.-.                           
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999997    55556543 210  1379999999 99998866310                           


Q ss_pred             ----------cc-cccccccCCCCC-CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          127 ----------IG-IYHDWCEGFSTY-PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       127 ----------~~-~~~~~~e~l~~~-p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                                +. ..+++.+ .|+. ++.||+|+|.+||.|+. ......++.++++.|||||++++..
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEe
Confidence                      00 1234444 3322 47899999999999984 2345799999999999999999964

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.30  E-value=1.8e-12  Score=115.65  Aligned_cols=103  Identities=16%  Similarity=0.037  Sum_probs=75.3

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDl  146 (235)
                      +..+...+..+|||+|||+|.++..|++...-...|+++|.+ +++..+.++    |+  +...+...+..+..+++||+
T Consensus        68 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~  147 (317)
T 1dl5_A           68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV  147 (317)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEE
Confidence            333444456799999999999999998753212359999999 888877665    44  22333333433333489999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      |++..+++|+.         .++.|+|||||.+++....
T Consensus       148 Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          148 IFVTVGVDEVP---------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EEECSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred             EEEcCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence            99999998874         5789999999999998654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.30  E-value=4.6e-12  Score=108.61  Aligned_cols=116  Identities=15%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------------Cc--cccccccccC-CC--CCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------------GL--IGIYHDWCEG-FS--TYPR  142 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------------gl--~~~~~~~~e~-l~--~~p~  142 (235)
                      ...+|||+|||+|.++..|+.... ..+|+++|.+ .++..+.++            |+  +..+...+.. ++  +.++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            356899999999999999987532 2479999999 888876543            44  2223333332 44  2348


Q ss_pred             ccceeeehhhhccC-----CCCCChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHHHhc
Q 026623          143 TYDLIHANGVFSLY-----ENTCKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKFAEG  197 (235)
Q Consensus       143 sFDlV~a~~vl~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~~~~  197 (235)
                      +||.|+...--.+.     ..+.-...++.++.|+|||||.|++. |..++.+.+...+..
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  188 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEE  188 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHh
Confidence            99998752110000     00001158999999999999999995 555555444444333

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.29  E-value=2.5e-12  Score=115.62  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=93.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Ccc---ccc-cccccCCCCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GLI---GIY-HDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl~---~~~-~~~~e~l~~~p~sFDlV~  148 (235)
                      +......+|||+|||+|.++..|.+... ...++++|.+.+++.+.++    |+.   ..+ .|..+.   .|..||+|+
T Consensus       179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~  254 (360)
T 1tw3_A          179 YDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LPRKADAII  254 (360)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred             CCCccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CCCCccEEE
Confidence            3444567999999999999999987532 2468888987777766553    332   222 222232   344599999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh--H------------------------HHHHHHHHHhccCcee
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV--D------------------------ALNKVRKFAEGMRWDT  202 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--~------------------------~~~~i~~~~~~~~W~~  202 (235)
                      ++.+|||+++ .+...+|.++.|+|||||.++|.|..  +                        ..+.++++++.-.+++
T Consensus       255 ~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  333 (360)
T 1tw3_A          255 LSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV  333 (360)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred             EcccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence            9999998852 23358999999999999999998643  1                        0234566666667776


Q ss_pred             EeecCCCCC--CCCceEEEEEec
Q 026623          203 KMMDHEDGP--LMPEKILIAVKQ  223 (235)
Q Consensus       203 ~~~~~~~~~--~~~e~~l~~~k~  223 (235)
                      .......+.  .....++.++|.
T Consensus       334 ~~~~~~~~~~~~~~~~~i~~~~~  356 (360)
T 1tw3_A          334 EEVRQLPSPTIPYDLSLLVLAPA  356 (360)
T ss_dssp             EEEEEEECSSSSCEEEEEEEEEC
T ss_pred             EEEEeCCCCcccCccEEEEEEeC
Confidence            532222111  011567888774

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.29  E-value=2.7e-12  Score=118.63  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ...+|||+|||+|.++..|+..+   ..|+++|.+ .++..+.++    ++ +..++..+..++..+++||+|+++..|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence            45699999999999999999875   379999999 888876654    32 2334444444443348999999999998


Q ss_pred             cCCC--CCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          155 LYEN--TCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       155 h~~~--~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +...  ..+...++.++.|+|||||.+++..+.
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            7321  234679999999999999999998654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.29  E-value=2.5e-12  Score=116.88  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT  159 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~  159 (235)
                      ....+|||+|||+|.++..|.++.. ...++++|.+.++..+.+..-+......... + +|. ||+|+++++|||+++ 
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~-~~~-~D~v~~~~~lh~~~d-  282 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDLPQVIENAPPLSGIEHVGGDMFA-S-VPQ-GDAMILKAVCHNWSD-  282 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTT-C-CCC-EEEEEEESSGGGSCH-
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeChHHHHHhhhhcCCCEEEeCCccc-C-CCC-CCEEEEecccccCCH-
Confidence            4567999999999999999987532 2368888987666655432212222222221 2 344 999999999999853 


Q ss_pred             CChHHHHHHHhhhhcCCcEEEEEe
Q 026623          160 CKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+...+|+++.|+|||||.++|.|
T Consensus       283 ~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          283 EKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            223499999999999999999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.29  E-value=2.8e-12  Score=116.96  Aligned_cols=100  Identities=13%  Similarity=0.114  Sum_probs=72.5

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      .....+|||+|||+|.++..|++... ...++.+|.+.++..+.++.-+......... + +|.. |+|++.++|||+++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~-~p~~-D~v~~~~vlh~~~~  276 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDLPHVIQDAPAFSGVEHLGGDMFD-G-VPKG-DAIFIKWICHDWSD  276 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTT-C-CCCC-SEEEEESCGGGBCH
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEehHHHHHhhhhcCCCEEEecCCCC-C-CCCC-CEEEEechhhcCCH
Confidence            34568999999999999999987421 2468899987777655443323332222221 2 3433 99999999998853


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                       .+...+|+++.|+|||||.++|.|
T Consensus       277 -~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          277 -EHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             -HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -HHHHHHHHHHHHHcCCCCEEEEEE
Confidence             345689999999999999999986

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=2.6e-12  Score=106.80  Aligned_cols=100  Identities=15%  Similarity=0.048  Sum_probs=72.0

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCC-CCcccee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTY-PRTYDLI  147 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~-p~sFDlV  147 (235)
                      .+...+..+|||+|||+|.++..|+....-...|+++|.+ .++..+.++    |+  +........ .++. +++||+|
T Consensus        72 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v  150 (215)
T 2yxe_A           72 LLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT-LGYEPLAPYDRI  150 (215)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG-GCCGGGCCEEEE
T ss_pred             hhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc-cCCCCCCCeeEE
Confidence            3444456799999999999999988752101479999999 888877665    32  222222221 1222 4789999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +++.+++|++         .++.|+|||||.+++....
T Consensus       151 ~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          151 YTTAAGPKIP---------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EESSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred             EECCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence            9999998874         3899999999999998754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.28  E-value=1.4e-11  Score=103.62  Aligned_cols=98  Identities=9%  Similarity=-0.008  Sum_probs=66.2

Q ss_pred             CCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC----ccccccccccCC---CCCCCccceeee
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGF---STYPRTYDLIHA  149 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l---~~~p~sFDlV~a  149 (235)
                      ..+..+|||+|||+|.++..|++. +. ...|+++|.+ .++..+.++.    .+..++...+..   ...+++||+|++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCC-CeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            445679999999999999999864 21 1369999999 7777654431    122223222321   223479999997


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +..     .......++.++.|+|||||.+++.
T Consensus       150 ~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          150 DVA-----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            543     1112235599999999999999996

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.28  E-value=6.6e-12  Score=105.06  Aligned_cols=96  Identities=18%  Similarity=0.180  Sum_probs=69.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCCCCC-----Ccccee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFSTYP-----RTYDLI  147 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~~~p-----~sFDlV  147 (235)
                      ..+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+.   ..++..+ +.++..+     ++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            5699999999999999998751112479999999 888877654    432   2222222 2222222     799999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++....      .+...++.++.|+|||||++++.+
T Consensus       145 ~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          145 YIDADK------ANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EECSCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCH------HHHHHHHHHHHHhcCCCcEEEEeC
Confidence            975432      246789999999999999999986

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.28  E-value=2.7e-12  Score=107.31  Aligned_cols=99  Identities=11%  Similarity=0.103  Sum_probs=72.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.++..++.++.  ..|+++|.+ .+++.+.++    |+  +..++..++. ++..+++||+|+++..|
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            46899999999999998766652  379999999 899877654    33  2233333333 45445899999998775


Q ss_pred             ccCCCCCChHHHHHHHhh--hhcCCcEEEEEeChH
Q 026623          154 SLYENTCKPEDILLEMDR--ILRPEGAVIFRDEVD  186 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~R--VLRPGG~lii~d~~~  186 (235)
                      + .   .....++.++.+  +|||||.+++.....
T Consensus       133 ~-~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 R-R---GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             S-T---TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             C-C---CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            4 2   356788888865  699999999987653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.28  E-value=9.7e-12  Score=108.43  Aligned_cols=117  Identities=10%  Similarity=0.103  Sum_probs=82.0

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc-----Cc--cccccccccCCCCCCCccce
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER-----GL--IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R-----gl--~~~~~~~~e~l~~~p~sFDl  146 (235)
                      .+...+..+|||+|||+|.++..|++. +. ...|+++|.+ .++..+.++     |+  +.......+. ++.+++||+
T Consensus       105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~  182 (275)
T 1yb2_A          105 RCGLRPGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDA  182 (275)
T ss_dssp             -CCCCTTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEE
T ss_pred             HcCCCCcCEEEEecCCCCHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccE
Confidence            344455679999999999999999875 11 2479999998 888877665     43  2222222222 223489999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCcee
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDT  202 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~  202 (235)
                      |++     |.+   +...+|.++.|+|||||.+++.+... ....+.+.++...|..
T Consensus       183 Vi~-----~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~  231 (275)
T 1yb2_A          183 VIA-----DIP---DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH  231 (275)
T ss_dssp             EEE-----CCS---CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred             EEE-----cCc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence            998     343   56799999999999999999998654 4556666666555554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.27  E-value=1.4e-11  Score=109.92  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=89.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccccCCCC--CCCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWCEGFST--YPRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~e~l~~--~p~sFDlV  147 (235)
                      ...+|||+|||+|.++..+++... ...|+++|++ .+++.+.++-      +    +..+...+..++.  .+++||+|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            457999999999999999997631 3579999999 8888876642      1    1222322222332  25899999


Q ss_pred             eehhhhccCCCCCCh--HHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCcee-EeecC--CCCCCCCceE
Q 026623          148 HANGVFSLYENTCKP--EDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDT-KMMDH--EDGPLMPEKI  217 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~--~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~-~~~~~--~~~~~~~e~~  217 (235)
                      +++....+.+. ..+  ..++.++.|+|||||.+++....     .....+.+.+++..+.. ..+..  ..-+.+.-.+
T Consensus       174 i~d~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f  252 (304)
T 3bwc_A          174 IIDTTDPAGPA-SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGT  252 (304)
T ss_dssp             EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEE
T ss_pred             EECCCCccccc-hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEE
Confidence            99766544321 112  68999999999999999997532     23455566666655543 33322  1222234568


Q ss_pred             EEEEec
Q 026623          218 LIAVKQ  223 (235)
Q Consensus       218 l~~~k~  223 (235)
                      ++|.|+
T Consensus       253 ~~as~~  258 (304)
T 3bwc_A          253 LVCSKK  258 (304)
T ss_dssp             EEEESS
T ss_pred             EEEeCC
Confidence            889886

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.27  E-value=1e-11  Score=107.43  Aligned_cols=116  Identities=13%  Similarity=0.097  Sum_probs=79.6

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc-----C-c---cccccccccCCCCCCCcc
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER-----G-L---IGIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R-----g-l---~~~~~~~~e~l~~~p~sF  144 (235)
                      .+...+..+|||+|||+|.++.+|+.. +. ...|+++|.+ +++..+.++     | +   +...+...+.+++.+++|
T Consensus        94 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~  172 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAGSGALTLSLLRAVGP-AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV  172 (280)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred             HcCCCCCCEEEEEcccccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCce
Confidence            344445679999999999999999874 11 2479999998 888877665     3 1   223333344455445899


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhc-cCc
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEG-MRW  200 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~-~~W  200 (235)
                      |+|++     +.+   ++..+|.++.|+|||||.+++.... +.+..+...++. ..|
T Consensus       173 D~v~~-----~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f  222 (280)
T 1i9g_A          173 DRAVL-----DML---APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW  222 (280)
T ss_dssp             EEEEE-----ESS---CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred             eEEEE-----CCc---CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence            99998     232   5568999999999999999998753 333343333333 444

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.27  E-value=1.1e-11  Score=109.07  Aligned_cols=97  Identities=12%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCc-c-ccHHHHHHcC---------c-------ccc-ccccccCCC-C-
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA-K-NTLGVIYERG---------L-------IGI-YHDWCEGFS-T-  139 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~-s-~~L~~~~~Rg---------l-------~~~-~~~~~e~l~-~-  139 (235)
                      ...+|||+|||+|.++..++..+.  ..|+++|. + .++..+.++-         +       +.. ..+|.+... . 
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            457999999999999998887752  37999999 7 8888765542         1       111 133444221 1 


Q ss_pred             ---CCCccceeeehhhhccCCCCCChHHHHHHHhhhhc---C--CcEEEEE
Q 026623          140 ---YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILR---P--EGAVIFR  182 (235)
Q Consensus       140 ---~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLR---P--GG~lii~  182 (235)
                         .+++||+|+++.+++|.+   ++..++.++.|+||   |  ||.+++.
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             hhccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence               248999999999998764   67899999999999   9  9986654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.27  E-value=1.5e-12  Score=106.41  Aligned_cols=138  Identities=14%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             CceEeeeccccchHHHHHhcC-CCc-------eeEEeecCccccHHHHHHcCccccc-cccccCCC-------CCC-Ccc
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSW-------VMNVVPTTAKNTLGVIYERGLIGIY-HDWCEGFS-------TYP-RTY  144 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~-------~~~V~~~D~s~~L~~~~~Rgl~~~~-~~~~e~l~-------~~p-~sF  144 (235)
                      ..+|||+|||+|.++..|++. +.-       ...|+++|.+.+...  + + +..+ .......+       .++ ++|
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~--~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~f   98 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL--E-G-ATFLCPADVTDPRTSQRILEVLPGRRA   98 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC--T-T-CEEECSCCTTSHHHHHHHHHHSGGGCE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC--C-C-CeEEEeccCCCHHHHHHHHHhcCCCCC
Confidence            579999999999999999875 310       047999999853211  0 1 1111 11111111       123 689


Q ss_pred             ceeeehhhhccCCCC-CCh-------HHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCC-CCCCCC
Q 026623          145 DLIHANGVFSLYENT-CKP-------EDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHE-DGPLMP  214 (235)
Q Consensus       145 DlV~a~~vl~h~~~~-~~~-------~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~-~~~~~~  214 (235)
                      |+|+|+..++..-+. .+.       ..+|.++.|+|||||.|++.+.. +....+...++..--.+...... ..+...
T Consensus        99 D~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~~~~  178 (196)
T 2nyu_A           99 DVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESS  178 (196)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC-------
T ss_pred             cEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCccCc
Confidence            999997655421110 011       48899999999999999998632 12223333333321122222211 222256


Q ss_pred             ceEEEEEec
Q 026623          215 EKILIAVKQ  223 (235)
Q Consensus       215 e~~l~~~k~  223 (235)
                      |.+++++.-
T Consensus       179 e~~~v~~g~  187 (196)
T 2nyu_A          179 EVYFLATQY  187 (196)
T ss_dssp             -EEEEEEEE
T ss_pred             eEEEEeeec
Confidence            888887643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.26  E-value=4.1e-12  Score=120.70  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cc---cccccccccCCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GL---IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFD  145 (235)
                      ++..+......+|||+|||+|.++..+++.+.  ..|+++|.+.++..+.++    |+   +..++...+.++ +++.||
T Consensus       150 il~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-~~~~fD  226 (480)
T 3b3j_A          150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVD  226 (480)
T ss_dssp             HHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEE
T ss_pred             HHHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCc-cCCCeE
Confidence            33444444567999999999999999988653  479999999877665443    44   333444444444 457999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+++.+++|+.+ .++...+.++.|+|||||.+++.
T Consensus       227 ~Ivs~~~~~~~~~-e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          227 IIISEPMGYMLFN-ERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             EEECCCCHHHHTC-HHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEEeCchHhcCc-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999888887642 35677888999999999999853

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.26  E-value=1.3e-11  Score=105.25  Aligned_cols=114  Identities=13%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccc---cccccccCCCCCCCccce
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIG---IYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~~~~e~l~~~p~sFDl  146 (235)
                      .+...+..+|||+|||+|.++..|+.. +. ...|+++|.+ ++++.+.++    |+..   ..+..... ++.+++||+
T Consensus        88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~  165 (255)
T 3mb5_A           88 YAGISPGDFIVEAGVGSGALTLFLANIVGP-EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIEEENVDH  165 (255)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCCCCSEEE
T ss_pred             hhCCCCCCEEEEecCCchHHHHHHHHHhCC-CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccCCCCcCE
Confidence            344455779999999999999999875 21 2479999999 888877665    4422   22222221 223488999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHHhccC
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFAEGMR  199 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~~~~~  199 (235)
                      |++     +.   .+...++.++.|+|||||.+++... .+....+.+.++...
T Consensus       166 v~~-----~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          166 VIL-----DL---PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             EEE-----CS---SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             EEE-----CC---CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            997     22   3567899999999999999999864 344555555555554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.26  E-value=2.5e-11  Score=102.52  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +......+|||+|||+|.++..+++.   ...++++|.+ ++++.+.++    |+   +...+.........+++||+|+
T Consensus        87 ~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  163 (248)
T 2yvl_A           87 LNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAF  163 (248)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEE
T ss_pred             cCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEE
Confidence            34345679999999999999999876   3479999999 888877665    33   1222222222111247899999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhcc
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGM  198 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~  198 (235)
                      +     +.   .++..++.++.|+|||||.+++.... +....+...++..
T Consensus       164 ~-----~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          164 V-----DV---REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             E-----CS---SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             E-----CC---cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence            7     22   35678999999999999999999864 4455555555444

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.26  E-value=2.7e-12  Score=108.10  Aligned_cols=139  Identities=11%  Similarity=0.070  Sum_probs=87.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCCCCC-----Cccce
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFSTYP-----RTYDL  146 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~~~p-----~sFDl  146 (235)
                      +..+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+   +..++..+ +.++..+     ++||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            35799999999999999998741112479999999 888877663    43   22233222 2244333     79999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHH-HHHHHhccCceeEeecC-CCCCCCCceEEEEEec
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNK-VRKFAEGMRWDTKMMDH-EDGPLMPEKILIAVKQ  223 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~-i~~~~~~~~W~~~~~~~-~~~~~~~e~~l~~~k~  223 (235)
                      |+++...+++.   +...++.++ |+|||||.+++.+... -... ++.+...-.+....... .......+.+.+++++
T Consensus       138 V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          138 VFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             EEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             EEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            99988777653   345677788 9999999999986421 1112 22222333555553321 1111245678888765

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.25  E-value=3.4e-12  Score=116.40  Aligned_cols=100  Identities=13%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      .....+|||+|||+|.++..|++... ...++.+|.+.++..+.++.-+..+...... | +|.. |+|++.++|||+++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~-~p~~-D~v~~~~vlh~~~d  274 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-E-VPSG-DTILMKWILHDWSD  274 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTT-C-CCCC-SEEEEESCGGGSCH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-C-CCCC-CEEEehHHhccCCH
Confidence            44568999999999999999987421 2368899998777665444323333222222 3 3433 99999999998853


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                       .+...+|+++.|+|||||+++|.|
T Consensus       275 -~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          275 -QHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             -HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -HHHHHHHHHHHHHcCCCCEEEEEE
Confidence             356799999999999999999986

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.25  E-value=1.9e-12  Score=104.55  Aligned_cols=99  Identities=16%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccC-C---CCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEG-F---STYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~-l---~~~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..++..+.  ..|+++|.+ .+++.+.++    ++   +..++..+.. +   +..+++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            456999999999999998877652  479999999 888876553    33   2223322222 1   11258999999


Q ss_pred             ehhhhccCCCCCChHHHHHHH--hhhhcCCcEEEEEeCh
Q 026623          149 ANGVFSLYENTCKPEDILLEM--DRILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em--~RVLRPGG~lii~d~~  185 (235)
                      ++..++.    .....++.++  .|+|||||.+++....
T Consensus       122 ~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          122 LDPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             ECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ECCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            9877642    2567788888  9999999999998654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.24  E-value=2e-11  Score=106.25  Aligned_cols=102  Identities=9%  Similarity=-0.001  Sum_probs=72.9

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccccccccc---cCCCCCCCccce
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWC---EGFSTYPRTYDL  146 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~---e~l~~~p~sFDl  146 (235)
                      .|...++.+|||+|||+|.++..|++. +. ...|+++|++ .|+..+.++    +.+..+...+   +..+..+++||+
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~-~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv  150 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGP-RGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG  150 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCT-TCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence            455566889999999999999999874 11 2469999999 999876553    3332222211   223444589999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++.  +.|.   .+...++.|+.|+|||||.++|.+
T Consensus       151 Vf~d--~~~~---~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          151 LYAD--VAQP---EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEC--CCCT---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEe--ccCC---hhHHHHHHHHHHhccCCCEEEEEE
Confidence            9864  3322   256789999999999999999974

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.24  E-value=8.5e-12  Score=104.42  Aligned_cols=97  Identities=14%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCCCC----CCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFSTY----PRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~~~----p~sFDlV  147 (235)
                      +..+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+.   ..++..+ +.++..    .++||+|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            35799999999999999998862112479999998 888876554    442   2222222 212211    1679999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++....+      ....++.++.|+|||||++++.+
T Consensus       138 ~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          138 FIDADKQ------NNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             EECSCGG------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred             EEcCCcH------HHHHHHHHHHHhcCCCcEEEEeC
Confidence            9865533      44689999999999999999875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.24  E-value=4.1e-12  Score=114.49  Aligned_cols=97  Identities=12%  Similarity=0.147  Sum_probs=70.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccc-cccccCCCCCCCccceeeehhhhccCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIY-HDWCEGFSTYPRTYDLIHANGVFSLYENT  159 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~-~~~~e~l~~~p~sFDlV~a~~vl~h~~~~  159 (235)
                      ...+|||+|||+|.++..|.+... ...++++|.+.++..+.+..-+... .|..+.   .|. ||+|+++++|||+++ 
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~p~-~D~v~~~~~lh~~~d-  261 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFP-KLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS---IPN-ADAVLLKYILHNWTD-  261 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCBTTEEEEECCTTTC---CCC-CSEEEEESCGGGSCH-
T ss_pred             cCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeCHHHHhhcccCCCcEEEeccccCC---CCC-ccEEEeehhhccCCH-
Confidence            457999999999999999986521 2368999997776655432212222 222232   334 999999999999853 


Q ss_pred             CChHHHHHHHhhhhcC---CcEEEEEe
Q 026623          160 CKPEDILLEMDRILRP---EGAVIFRD  183 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRP---GG~lii~d  183 (235)
                      .+...+|+++.|+|||   ||+++|.|
T Consensus       262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          262 KDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            2234999999999999   99999986

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.23  E-value=1.9e-12  Score=102.98  Aligned_cols=96  Identities=13%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccC-CCCC---CCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEG-FSTY---PRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~-l~~~---p~sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++..++..+.   +|+++|.+ .+++.+.++    ++ +..++..+.. ++..   +++||+|+++.
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            56899999999999999988753   39999999 888876654    32 2222222222 2222   24899999988


Q ss_pred             hhccCCCCCChHHHHHHHh--hhhcCCcEEEEEeCh
Q 026623          152 VFSLYENTCKPEDILLEMD--RILRPEGAVIFRDEV  185 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~--RVLRPGG~lii~d~~  185 (235)
                      .++  .   ....++.++.  |+|||||.+++....
T Consensus       119 ~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          119 PYA--M---DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             CCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            775  2   3346666666  999999999998754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.23  E-value=7e-12  Score=105.15  Aligned_cols=96  Identities=14%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----C-------ccccccccccCCCCCCCccce
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----G-------LIGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----g-------l~~~~~~~~e~l~~~p~sFDl  146 (235)
                      .+..+|||+|||+|.++..|++. +. ...|+++|.+ .++..+.++    |       .+...+......+..+++||+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            34679999999999999988864 21 1379999999 888876554    2       122223222323323478999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      |+++..++++         +.++.|+|||||.+++....
T Consensus       155 i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVV---------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHH---------HHHHHHhcCCCcEEEEEEec
Confidence            9998888654         36889999999999998653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.23  E-value=9.9e-12  Score=110.04  Aligned_cols=129  Identities=15%  Similarity=0.227  Sum_probs=87.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---ccccc-ccccCCCCCCCcc---ceeee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYH-DWCEGFSTYPRTY---DLIHA  149 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~-~~~e~l~~~p~sF---DlV~a  149 (235)
                      ..+|||+|||+|.++..|+..+  ..+|+++|.| .++..+.++    |+   +..++ |+.+.   .+++|   |+|++
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~--~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~Ivs  198 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILS  198 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEE
Confidence            4589999999999999998763  3579999999 899887654    44   22222 22222   23689   99999


Q ss_pred             h------------hhhccCC-----CCCChHHHHHHHh-hhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCC
Q 026623          150 N------------GVFSLYE-----NTCKPEDILLEMD-RILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGP  211 (235)
Q Consensus       150 ~------------~vl~h~~-----~~~~~~~~L~Em~-RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~  211 (235)
                      +            .+. |.+     ..++-..+++++. +.|+|||++++.-..+....+.++++..  . ...|..   
T Consensus       199 nPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~-~~~D~~---  271 (284)
T 1nv8_A          199 NPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--V-FLKDSA---  271 (284)
T ss_dssp             CCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--E-EEECTT---
T ss_pred             cCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--C-eecccC---
Confidence            7            222 221     1122237899999 9999999999976655555666666554  2 222322   


Q ss_pred             CCCceEEEEEec
Q 026623          212 LMPEKILIAVKQ  223 (235)
Q Consensus       212 ~~~e~~l~~~k~  223 (235)
                       +.+++++++++
T Consensus       272 -g~~R~~~~~~k  282 (284)
T 1nv8_A          272 -GKYRFLLLNRR  282 (284)
T ss_dssp             -SSEEEEEEECC
T ss_pred             -CCceEEEEEEc
Confidence             57899888765

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.22  E-value=1.9e-11  Score=104.24  Aligned_cols=130  Identities=11%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccc-cCCCCC-CCccceeee
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWC-EGFSTY-PRTYDLIHA  149 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~-e~l~~~-p~sFDlV~a  149 (235)
                      ..+|||+|||+|.++..|+.. +. ...|+++|.+ .++..+.++    |+.    ..++..+ +.++.. +++||+|++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLAD-NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCT-TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            349999999999999988763 21 2479999999 888876553    432    1222221 223434 589999998


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh------------HHHHHHHHHHhccCce----eEeecCCCCCCC
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV------------DALNKVRKFAEGMRWD----TKMMDHEDGPLM  213 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~------------~~~~~i~~~~~~~~W~----~~~~~~~~~~~~  213 (235)
                      ....      .+...++.++.|+|||||++++.+..            .....++++.+.+++.    +.+.  +    -
T Consensus       136 d~~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p----~  203 (221)
T 3dr5_A          136 QVSP------MDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARL--P----L  203 (221)
T ss_dssp             CCCT------TTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEE--S----S
T ss_pred             cCcH------HHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEe--e----c
Confidence            6433      24578999999999999999996421            1223445555555554    3322  1    3


Q ss_pred             CceEEEEEecc
Q 026623          214 PEKILIAVKQY  224 (235)
Q Consensus       214 ~e~~l~~~k~~  224 (235)
                      .+.+++++|.+
T Consensus       204 gdGl~~~~~~~  214 (221)
T 3dr5_A          204 GAGLTVVTKAL  214 (221)
T ss_dssp             TTCEEEEEECC
T ss_pred             cchHHHHHHHH
Confidence            56789998876

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.22  E-value=2.4e-11  Score=108.96  Aligned_cols=126  Identities=13%  Similarity=0.126  Sum_probs=81.6

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +...+..+|||+|||+|+++..|++.-.-...|+++|.+ .++..+.++    |+  +..++..++.++..+++||+|++
T Consensus       114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence            444556799999999999999988631112469999999 888876665    44  23344444555545689999998


Q ss_pred             hh------hhccCCCC---CC----------hHHHHHHHhhhhcCCcEEEEEeCh----HHHHHHHHHHhccCcee
Q 026623          150 NG------VFSLYENT---CK----------PEDILLEMDRILRPEGAVIFRDEV----DALNKVRKFAEGMRWDT  202 (235)
Q Consensus       150 ~~------vl~h~~~~---~~----------~~~~L~Em~RVLRPGG~lii~d~~----~~~~~i~~~~~~~~W~~  202 (235)
                      +.      ++.+.++.   -.          ...+|.++.|+|||||.+++++..    +--..++.+++...++.
T Consensus       194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~  269 (315)
T 1ixk_A          194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL  269 (315)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence            42      33322210   00          148999999999999999997531    22234555655555543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.22  E-value=1.3e-11  Score=113.73  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=78.7

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---cc--ccccccCCCCCCCc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GI--YHDWCEGFSTYPRT  143 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~--~~~~~e~l~~~p~s  143 (235)
                      +..+......+|||+|||+|.++..++.... ...|+++|.+ .++..+.++    |+.   ..  +...+.. ++.+++
T Consensus       215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~  292 (375)
T 4dcm_A          215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFR  292 (375)
T ss_dssp             HHTCCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTC
T ss_pred             HHhCcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCC
Confidence            4445444457999999999999999987531 2479999999 888876553    321   11  2222222 223489


Q ss_pred             cceeeehhhhccCC--CCCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHH
Q 026623          144 YDLIHANGVFSLYE--NTCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFA  195 (235)
Q Consensus       144 FDlV~a~~vl~h~~--~~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~  195 (235)
                      ||+|+|+..|++..  .......++.++.|+|||||.+++..+.  .+...+++..
T Consensus       293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~f  348 (375)
T 4dcm_A          293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF  348 (375)
T ss_dssp             EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHH
T ss_pred             eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhc
Confidence            99999999998632  1122347899999999999999997643  2333444443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.21  E-value=1.3e-11  Score=102.71  Aligned_cols=95  Identities=17%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCCCCCCccceeeehhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~~~p~sFDlV~a~~v  152 (235)
                      ..+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+   +..++..+ +.++..++ ||+|+++..
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~  135 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD  135 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence            5699999999999999998752112479999999 888876653    43   22233222 22354557 999998632


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                            ..+...++.++.|+|||||.+++.+
T Consensus       136 ------~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          136 ------VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             ------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             ------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence                  2367899999999999999999965

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.21  E-value=7.6e-12  Score=105.75  Aligned_cols=96  Identities=10%  Similarity=0.163  Sum_probs=71.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccC-CCCC--CCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEG-FSTY--PRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~-l~~~--p~sFDlV~a  149 (235)
                      +..+|||+|||+|.++..|+.... ...|+++|.+ .++..+.++    |+   +......... ++..  +++||+|++
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            356999999999999999887521 2479999999 888877665    43   2222222222 2333  579999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +..++      +...+|.++.|+|||||.+++.+
T Consensus       133 ~~~~~------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          133 DAAKG------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            77753      56799999999999999999985

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.20  E-value=1.1e-10  Score=96.21  Aligned_cols=110  Identities=12%  Similarity=0.002  Sum_probs=74.1

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-ccccccccccCCCCCCCccceeeehhhhccCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-LIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      ....+|||+|||+|.++..++..+  ...|+++|.+ .++..+.++- -+..++...+.+   +++||+|+++..|+|..
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~---~~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI---SGKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC---CCCEEEEEECCCC----
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHC---CCCeeEEEECCCchhcc
Confidence            346799999999999999998775  3469999999 8998887763 123333333444   48999999999999885


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM  198 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~  198 (235)
                      +. ....++.++.|+|  |+.+++.. ......+.+.++..
T Consensus       125 ~~-~~~~~l~~~~~~~--g~~~~~~~-~~~~~~~~~~~~~~  161 (200)
T 1ne2_A          125 KH-SDRAFIDKAFETS--MWIYSIGN-AKARDFLRREFSAR  161 (200)
T ss_dssp             ----CHHHHHHHHHHE--EEEEEEEE-GGGHHHHHHHHHHH
T ss_pred             Cc-hhHHHHHHHHHhc--CcEEEEEc-CchHHHHHHHHHHC
Confidence            42 3358999999999  66555543 33344555554444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.20  E-value=6.5e-11  Score=102.95  Aligned_cols=115  Identities=13%  Similarity=0.100  Sum_probs=80.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCcccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV  147 (235)
                      +...+..+|||+|||+|.++..|+.. +. ...|+++|.+ .+++.+.++    |+   +...+.....+ +.+++||+|
T Consensus       108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V  185 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDAL  185 (277)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEE
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEE
Confidence            44445679999999999999988875 21 2479999998 888877665    43   22222222222 224789999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCce
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWD  201 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~  201 (235)
                      +++     .   .++..+|.++.|+|||||.+++.+.. +...++.+.++...|.
T Consensus       186 ~~~-----~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~  232 (277)
T 1o54_A          186 FLD-----V---PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  232 (277)
T ss_dssp             EEC-----C---SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             EEC-----C---cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            982     2   35578999999999999999999864 3455555555555565

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.20  E-value=5.2e-11  Score=107.63  Aligned_cols=145  Identities=21%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDl  146 (235)
                      +...++.+..+|||+|||+|.++..++....-...++++|.+ .++..+.++    |+  +...+..++.++...+.||+
T Consensus       196 ~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~  275 (354)
T 3tma_A          196 LRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDR  275 (354)
T ss_dssp             HHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSE
T ss_pred             HHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCE
Confidence            333455567899999999999988887632001369999999 888876654    43  34445555666655578999


Q ss_pred             eeehhhhccCC-CCCC----hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeec-CCCCCCCCceEEEE
Q 026623          147 IHANGVFSLYE-NTCK----PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMD-HEDGPLMPEKILIA  220 (235)
Q Consensus       147 V~a~~vl~h~~-~~~~----~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~-~~~~~~~~e~~l~~  220 (235)
                      |+++--+..-. +..+    ...++.++.|+|||||.+++....+.  .++.+.+ ..|+..... ..+|. -.-.++++
T Consensus       276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~-l~~~i~vl  351 (354)
T 3tma_A          276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGG-VYPRVFVL  351 (354)
T ss_dssp             EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTT-BCCEEEEE
T ss_pred             EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCC-EEEEEEEE
Confidence            99976553211 1011    26899999999999999999876542  2345555 777765322 22333 23456666


Q ss_pred             Ee
Q 026623          221 VK  222 (235)
Q Consensus       221 ~k  222 (235)
                      +|
T Consensus       352 ~r  353 (354)
T 3tma_A          352 EK  353 (354)
T ss_dssp             EE
T ss_pred             Ec
Confidence            55

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.19  E-value=3.4e-11  Score=107.83  Aligned_cols=101  Identities=15%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC-----------------ccccccccccC
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG-----------------LIGIYHDWCEG  136 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg-----------------l~~~~~~~~e~  136 (235)
                      .+...+..+|||+|||+|.++..|+.. +. ...|+++|.+ .++..+.++.                 .+...+...+.
T Consensus       100 ~l~~~~g~~VLDiG~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~  178 (336)
T 2b25_A          100 MMDINPGDTVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG  178 (336)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHH
Confidence            344455779999999999999998874 21 2479999999 8888766641                 12223333333


Q ss_pred             C--CCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          137 F--STYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       137 l--~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +  ++.+++||+|+++..        +...++.++.|+|||||.+++....
T Consensus       179 ~~~~~~~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          179 ATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             CC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cccccCCCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            3  223478999998421        2335899999999999999988643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.19  E-value=1.4e-11  Score=106.28  Aligned_cols=96  Identities=9%  Similarity=0.035  Sum_probs=68.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCCCC-----CCcccee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFSTY-----PRTYDLI  147 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~~~-----p~sFDlV  147 (235)
                      ..+|||+|||+|..+..|+..-.-...|+++|.+ .++..+.++    |+.   ..++..+ +.++..     +++||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            5699999999999999998741112479999998 777654443    442   2233222 223322     5899999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++....      .+...++.++.|+|||||++++.|
T Consensus       141 ~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          141 FIDADK------TNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             EEESCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCh------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence            986543      245689999999999999999975

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.18  E-value=3.3e-12  Score=114.65  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCc----c-ccHHHHHHc--Cc--cccccccccCCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA----K-NTLGVIYER--GL--IGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~----s-~~L~~~~~R--gl--~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|+++..|++++    .|+++|.    + .++..+..+  |.  +....+ .+.+...+++||+|+|+.
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECC
T ss_pred             CCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECC
Confidence            35799999999999999999873    4778887    3 343211111  11  122222 012222248999999987


Q ss_pred             hhc---cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          152 VFS---LYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       152 vl~---h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .++   +..+......+|.++.|+|||||.|++..
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            764   11110001158999999999999999974

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.18  E-value=9.5e-12  Score=111.06  Aligned_cols=102  Identities=10%  Similarity=0.020  Sum_probs=70.1

Q ss_pred             CCCceEeeecccc--chHHHHHhc--CCCceeEEeecCcc-ccHHHHHHc--C----ccccccccccCCC------CCCC
Q 026623           80 RRYRNVMDMNAGL--GGFAAALES--PKSWVMNVVPTTAK-NTLGVIYER--G----LIGIYHDWCEGFS------TYPR  142 (235)
Q Consensus        80 ~~~r~VLD~GCG~--G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~R--g----l~~~~~~~~e~l~------~~p~  142 (235)
                      ..+++|||+|||+  +++...++.  .+  ...|+++|.| .||..+.++  +    -+..++.....++      ...+
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P--~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAP--ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCT--TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCC--CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence            3578999999997  433344332  13  2479999999 999977664  1    1122222222211      0024


Q ss_pred             ccc-----eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          143 TYD-----LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       143 sFD-----lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +||     .|+++.+|||+++..++..+|.++.+.|+|||+|++++
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            565     58899999999865557899999999999999999995

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.17  E-value=1.9e-11  Score=102.57  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=68.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCC----ceeEEeecCcc-ccHHHHHHc----Cc-------cccccccccCCC----CC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKS----WVMNVVPTTAK-NTLGVIYER----GL-------IGIYHDWCEGFS----TY  140 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~----~~~~V~~~D~s-~~L~~~~~R----gl-------~~~~~~~~e~l~----~~  140 (235)
                      +..+|||+|||+|.++..|++...    -...|+++|.+ .++..+.++    |+       +......+....    +.
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  159 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence            457999999999999999887421    12379999999 888877665    31       222222222222    22


Q ss_pred             CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +++||+|+++..++|+         +.++.++|||||.+++.-..
T Consensus       160 ~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          160 LGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEcc
Confidence            3889999998888754         47889999999999998643

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.17  E-value=6.2e-11  Score=104.50  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=86.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-----Cc-----------cccccccccC-CCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-----GL-----------IGIYHDWCEG-FSTYPR  142 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-----gl-----------~~~~~~~~e~-l~~~p~  142 (235)
                      ...+|||+|||+|.++..+++.+  ..+|+++|.+ .+++.+.++     ++           +..++..+.. ++. ++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            35799999999999999998874  4589999999 888887664     22           1112221111 222 68


Q ss_pred             ccceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecC--CCCCCC
Q 026623          143 TYDLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDH--EDGPLM  213 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~  213 (235)
                      +||+|+++... +......  ...++.++.|+|||||.+++...     .+....+.+.++..--.+..+..  +.. .+
T Consensus       152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g  229 (281)
T 1mjf_A          152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-AS  229 (281)
T ss_dssp             CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SS
T ss_pred             CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-Cc
Confidence            89999986543 2211112  26899999999999999999742     23344444444443333333221  222 24


Q ss_pred             CceEEEEEec
Q 026623          214 PEKILIAVKQ  223 (235)
Q Consensus       214 ~e~~l~~~k~  223 (235)
                      .-.+++|.|+
T Consensus       230 ~~~~~~as~~  239 (281)
T 1mjf_A          230 PWAFLVGVKG  239 (281)
T ss_dssp             SEEEEEEEES
T ss_pred             eEEEEEeeCC
Confidence            5678899887

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.17  E-value=1.4e-11  Score=104.52  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=70.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCC-Cccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYP-RTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p-~sFDlV~  148 (235)
                      +...+..+|||+|||+|.++..|++...  ..|+++|.+ .++..+.++    |+  +....... ..++.+ ..||+|+
T Consensus        87 l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii  163 (235)
T 1jg1_A           87 ANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVII  163 (235)
T ss_dssp             HTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEE
T ss_pred             cCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEE
Confidence            4444567999999999999999987532  469999998 888877664    33  22222221 223333 4599999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      ++.+++++.         .++.|+|||||.+++....
T Consensus       164 ~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          164 VTAGAPKIP---------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             ECSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             ECCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence            999998764         3789999999999998754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.17  E-value=1.8e-11  Score=115.27  Aligned_cols=101  Identities=10%  Similarity=0.058  Sum_probs=70.8

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHH-------HHc----Cc----cccccc-cccC-C
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVI-------YER----GL----IGIYHD-WCEG-F  137 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~-------~~R----gl----~~~~~~-~~e~-l  137 (235)
                      ++.....+|||+|||+|.++..|+.. +  ...|+++|.+ .++..+       .++    |+    +..++. ..+. .
T Consensus       238 l~l~~g~~VLDLGCGsG~la~~LA~~~g--~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          238 CQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence            44445679999999999999999874 3  2369999999 777766       433    42    112221 1110 0


Q ss_pred             CC--CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          138 ST--YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       138 ~~--~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++  .+++||+|+++.++. .   .++..+|.|+.|+|||||.+++.+
T Consensus       316 ~~~~~~~~FDvIvvn~~l~-~---~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          316 RVAELIPQCDVILVNNFLF-D---EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HHHHHGGGCSEEEECCTTC-C---HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccCCCCEEEEeCccc-c---ccHHHHHHHHHHhCCCCeEEEEee
Confidence            11  137899999976662 2   267789999999999999999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.16  E-value=1.3e-11  Score=111.49  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=69.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccc-cccccCCCCCCCccceeeehhhhccCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIY-HDWCEGFSTYPRTYDLIHANGVFSLYENT  159 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~-~~~~e~l~~~p~sFDlV~a~~vl~h~~~~  159 (235)
                      ...+|||+|||+|.++..|.+... ...++++|.+.++..+.+..-+... .|..+  + .| .||+|+++++|||+++ 
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~--~-~~-~~D~v~~~~vlh~~~d-  266 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQPQVVGNLTGNENLNFVGGDMFK--S-IP-SADAVLLKWVLHDWND-  266 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECHHHHSSCCCCSSEEEEECCTTT--C-CC-CCSEEEEESCGGGSCH-
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCC-CCeEEEeccHHHHhhcccCCCcEEEeCccCC--C-CC-CceEEEEcccccCCCH-
Confidence            457999999999999999987521 2368888987666544332112222 22222  2 33 4999999999999853 


Q ss_pred             CChHHHHHHHhhhhcC---CcEEEEEe
Q 026623          160 CKPEDILLEMDRILRP---EGAVIFRD  183 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRP---GG~lii~d  183 (235)
                      .+...+|+++.|+|||   ||.++|.|
T Consensus       267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          267 EQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            2244999999999999   99999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.15  E-value=4.5e-11  Score=101.67  Aligned_cols=132  Identities=12%  Similarity=0.083  Sum_probs=85.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCC-------------
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFS-------------  138 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~-------------  138 (235)
                      +..+|||+|||+|.++..|+....-...|+++|.+ .++..+.++    |+.   ....... +.++             
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            35699999999999999998752112479999998 888876665    432   1221111 1111             


Q ss_pred             -CC-C-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC------------hHHHHHHHH----HHhccC
Q 026623          139 -TY-P-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE------------VDALNKVRK----FAEGMR  199 (235)
Q Consensus       139 -~~-p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~------------~~~~~~i~~----~~~~~~  199 (235)
                       |. + ++||+|+++....      +...++.++.|+|||||.+++.+.            ......+++    +...-.
T Consensus       140 ~f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSL  213 (239)
T ss_dssp             TTCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTT
T ss_pred             cccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCC
Confidence             11 2 7899999875443      456899999999999999999861            011222333    334455


Q ss_pred             ceeEeecCCCCCCCCceEEEEEecc
Q 026623          200 WDTKMMDHEDGPLMPEKILIAVKQY  224 (235)
Q Consensus       200 W~~~~~~~~~~~~~~e~~l~~~k~~  224 (235)
                      +.+.....      .+.+.+++|++
T Consensus       214 ~~~~~~p~------~~g~~~~~~~~  232 (239)
T 2hnk_A          214 VDVSLVPI------ADGVSLVRKRL  232 (239)
T ss_dssp             EEEEEECS------TTCEEEEEECC
T ss_pred             eEEEEEEc------CCceEeeeehh
Confidence            66654432      34588888876

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.15  E-value=1.8e-10  Score=101.43  Aligned_cols=143  Identities=14%  Similarity=0.134  Sum_probs=90.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      ..++|||+|||+|.++.++++... +..|+.+|++ .+++.+.+.      ++    +..++..+.. ++..+++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            467999999999999999998721 3579999999 888887664      22    1222322221 333358999999


Q ss_pred             ehhhhccCCC-CCChHHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecC--CCCCCCCceEEEE
Q 026623          149 ANGVFSLYEN-TCKPEDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDH--EDGPLMPEKILIA  220 (235)
Q Consensus       149 a~~vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e~~l~~  220 (235)
                      ++...+..+. .-....++.++.|+|||||.+++...     .+.+..+.+.+++.--.+..+..  +.-+.+.-.+++|
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~a  233 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIG  233 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEe
Confidence            9654322211 00125899999999999999999842     23344444555554333443321  1111235678899


Q ss_pred             Eecc
Q 026623          221 VKQY  224 (235)
Q Consensus       221 ~k~~  224 (235)
                      .|++
T Consensus       234 sk~~  237 (275)
T 1iy9_A          234 SKKY  237 (275)
T ss_dssp             ESSC
T ss_pred             eCCC
Confidence            9874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.14  E-value=7.6e-11  Score=109.13  Aligned_cols=99  Identities=18%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHH----cCc---cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE----RGL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~----Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +...|||+|||+|-++...++.|.  ..|+++|.++++..+.+    .|+   +..++...+.+. .|..||+|++..+-
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-lpe~~DvivsE~~~  159 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE-LPEQVDAIVSEWMG  159 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEECCCCB
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec-CCccccEEEeeccc
Confidence            356899999999988777666663  36999999877765443    355   445565556665 56899999985444


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.+-....+..++...+|.|||||.++-+
T Consensus       160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          160 YGLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccccchhhhHHHHHHhhCCCCceECCc
Confidence            33333346789999999999999998754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.13  E-value=1.6e-10  Score=102.76  Aligned_cols=143  Identities=12%  Similarity=0.014  Sum_probs=85.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccccC-CCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..+++... ..+|+++|++ .+++.+.++-      +    +..++..+.. ++..+++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            357999999999999999998621 3579999999 8888776641      1    1122222111 333458999999


Q ss_pred             ehhhhccCCCCC--ChHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEeecC--CCCCCCCceEEE
Q 026623          149 ANGVFSLYENTC--KPEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKMMDH--EDGPLMPEKILI  219 (235)
Q Consensus       149 a~~vl~h~~~~~--~~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e~~l~  219 (235)
                      ++..-.......  ....++.++.|+|||||.+++....     +....+.+.+++.--.+..+..  ..-+.+...+++
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~  248 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF  248 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence            853321011001  1268999999999999999998422     2233333333333223333221  111224567889


Q ss_pred             EEecc
Q 026623          220 AVKQY  224 (235)
Q Consensus       220 ~~k~~  224 (235)
                      |.|++
T Consensus       249 as~~~  253 (296)
T 1inl_A          249 ASKGI  253 (296)
T ss_dssp             EESSC
T ss_pred             ecCCC
Confidence            99873

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.12  E-value=1e-09  Score=90.49  Aligned_cols=116  Identities=15%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ....+|||+|||+|.++..++..+.  ..|+++|.+ .++..+.++    |+ +..++..++.+   +++||+|+++..+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~D~v~~~~p~  122 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF  122 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc---CCCCCEEEEcCCC
Confidence            3467999999999999999988752  379999999 888887765    22 23334434444   4699999999888


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~  203 (235)
                      ++... .....++.++.|+|  ||.+++.- .......+.+.+....|++.
T Consensus       123 ~~~~~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  170 (207)
T 1wy7_A          123 GSQRK-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVT  170 (207)
T ss_dssp             SSSST-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             ccccC-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence            77643 34468899999999  66655552 44555666777776667654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.12  E-value=2e-10  Score=102.89  Aligned_cols=132  Identities=11%  Similarity=0.055  Sum_probs=80.6

Q ss_pred             CCCCceEeeecc------ccch-HHHHHhcCCCceeEEeecCccccHHHHHHcCcccc-ccccccCCCCCCCccceeeeh
Q 026623           79 TRRYRNVMDMNA------GLGG-FAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGI-YHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        79 ~~~~r~VLD~GC------G~G~-faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~-~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ..+..+|||+||      |+|+ .++.+...   ...|+++|+++.+    + + +.. ++..++.++ ++++||+|+++
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~---~~~V~gvDis~~v----~-~-v~~~i~gD~~~~~-~~~~fD~Vvsn  130 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPT---GTLLVDSDLNDFV----S-D-ADSTLIGDCATVH-TANKWDLIISD  130 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCT---TCEEEEEESSCCB----C-S-SSEEEESCGGGCC-CSSCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHHHHHHHHcCC---CCEEEEEECCCCC----C-C-CEEEEECccccCC-ccCcccEEEEc
Confidence            344679999999      5576 22222221   1369999999542    1 2 233 444445555 35899999997


Q ss_pred             hhhcc--------CCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCc-eeEeecCCCCCCCCceEEEE
Q 026623          151 GVFSL--------YENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRW-DTKMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       151 ~vl~h--------~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W-~~~~~~~~~~~~~~e~~l~~  220 (235)
                      ...+.        ......+..+|.|+.|+|||||.|++.... .....+..+++...| .+... +- .....|.+|++
T Consensus       131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~-as-r~~s~e~~lv~  208 (290)
T 2xyq_A          131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT-NV-NASSSEAFLIG  208 (290)
T ss_dssp             CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE-GG-GTTSSCEEEEE
T ss_pred             CCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE-Ec-CCCchheEEec
Confidence            54321        111112458999999999999999997522 222355666666644 44444 21 12247889988


Q ss_pred             Ee
Q 026623          221 VK  222 (235)
Q Consensus       221 ~k  222 (235)
                      +.
T Consensus       209 ~~  210 (290)
T 2xyq_A          209 AN  210 (290)
T ss_dssp             EE
T ss_pred             CC
Confidence            76

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.11  E-value=4.4e-11  Score=100.79  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             CCceEeeeccccchHHHHHhcC-CC----ceeEEeecCcc-ccHHHHHHc----C-------ccccccccccCCCCCC-C
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KS----WVMNVVPTTAK-NTLGVIYER----G-------LIGIYHDWCEGFSTYP-R  142 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~----~~~~V~~~D~s-~~L~~~~~R----g-------l~~~~~~~~e~l~~~p-~  142 (235)
                      +..+|||+|||+|.++..|++. +.    ....|+++|.+ +++..+.++    |       .+...+..+.. ++.+ +
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  162 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA  162 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence            4579999999999999988763 10    01369999999 888876654    2       12222322222 2233 7


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +||+|+++..++|+.         .++.|+|||||.+++....
T Consensus       163 ~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          163 PYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             SEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred             CccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEec
Confidence            999999999887653         6899999999999998653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.11  E-value=8.6e-12  Score=120.22  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc--cccccccccCC--CCCCCccceeeehhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL--IGIYHDWCEGF--STYPRTYDLIHANGV  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl--~~~~~~~~e~l--~~~p~sFDlV~a~~v  152 (235)
                      ..+|||+|||.|.++..|+..|   .+|+|+|.+ .++.+|..    +|.  +...+..+|.+  ++.+++||+|+|..+
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            4699999999999999999987   479999999 89987654    453  22334444555  334689999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+++... ...+..+.+.|+++|..++..
T Consensus       144 ~ehv~~~~~-~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          144 FHHIVHLHG-IDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             HHHHHHHHC-HHHHHHHHHHHHHHSSEEEEE
T ss_pred             hhcCCCHHH-HHHHHHHHHHhccccceeeEE
Confidence            999974322 234556778899988877663

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.10  E-value=1.6e-10  Score=96.81  Aligned_cols=97  Identities=15%  Similarity=0.081  Sum_probs=68.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCCCC-----CCccce
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFSTY-----PRTYDL  146 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~~~-----p~sFDl  146 (235)
                      ...+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+   +..++..+ +.++..     +++||+
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  148 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  148 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence            35699999999999999998751112479999998 888876654    43   22222211 111111     178999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+++..      ..+...++.++.|+|||||.+++.+
T Consensus       149 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          149 AVVDAD------KENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             EEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCC------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            998543      2356799999999999999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.10  E-value=2.4e-10  Score=97.35  Aligned_cols=96  Identities=13%  Similarity=0.085  Sum_probs=68.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-c---CCCCCC--Ccccee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-E---GFSTYP--RTYDLI  147 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e---~l~~~p--~sFDlV  147 (235)
                      ..+|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+.   ..+...+ +   .++..+  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            5699999999999999998751112479999999 888876654    432   2222211 1   122223  789999


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++....      .+...++.++.|+|||||++++.+
T Consensus       153 ~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          153 FIDADK------RNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             EECSCG------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             EECCCH------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence            986542      256789999999999999999975

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.10  E-value=8.1e-11  Score=106.68  Aligned_cols=117  Identities=18%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccccCCCCC----CCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWCEGFSTY----PRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~e~l~~~----p~sFDlV  147 (235)
                      ...+|||+|||+|.|+..++..+.   .|+++|.+ .++..+.+.    |+.    ..++..+..+...    +++||+|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence            356999999999999999998763   79999999 888876654    432    2233322222111    4689999


Q ss_pred             eehhh----------hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC------hH-HHHHHHHHHhccCceeE
Q 026623          148 HANGV----------FSLYENTCKPEDILLEMDRILRPEGAVIFRDE------VD-ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       148 ~a~~v----------l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~------~~-~~~~i~~~~~~~~W~~~  203 (235)
                      +++--          +++.   .+...++.++.|+|||||++++...      .+ +...+++.++....++.
T Consensus       230 i~dPP~~~~~~~~~~~~~~---~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          230 LTDPPKFGRGTHGEVWQLF---DHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             EECCCSEEECTTCCEEEHH---HHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             EECCccccCCchHHHHHHH---HHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            98432          1111   1457899999999999999777641      11 23444445555555553

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.10  E-value=2.4e-10  Score=100.90  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=70.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccccC-CCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..+++... ..+|+++|++ .+++.+.++-      +    +..++..+.. ++..+++||+|+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            457999999999999999987632 4589999999 8888877641      1    1122222211 222368999999


Q ss_pred             ehhhhccCCCCCCh--HHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKP--EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~--~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++...++.+. ..+  ..++.++.|+|||||.+++..
T Consensus       157 ~d~~~~~~~~-~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          157 VDSSDPIGPA-ETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EECCCTTTGG-GGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcc-hhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            8654332211 122  699999999999999999984

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.09  E-value=1.8e-10  Score=103.87  Aligned_cols=140  Identities=14%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..+++... ...|+.+|++ .+++.+.++      |+    +..++..+.. ++..+++||+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            357999999999999999987632 3589999999 888887764      22    1112221111 222358999999


Q ss_pred             ehhhhccCCCCCCh--HHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecC--CCCCCCCc-eEE
Q 026623          149 ANGVFSLYENTCKP--EDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDH--EDGPLMPE-KIL  218 (235)
Q Consensus       149 a~~vl~h~~~~~~~--~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e-~~l  218 (235)
                      ++.. .+......+  ..++.++.|+|||||.+++...     .+....+.+..+.+-=.+..+..  +..+ ... .++
T Consensus       187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~-~g~~g~~  264 (314)
T 2b2c_A          187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYP-SGSMGYL  264 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSG-GGEEEEE
T ss_pred             EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcC-CCceEEE
Confidence            8553 332111122  6899999999999999999852     12333444444443223332211  1111 122 588


Q ss_pred             EEEec
Q 026623          219 IAVKQ  223 (235)
Q Consensus       219 ~~~k~  223 (235)
                      +|.|.
T Consensus       265 ~ask~  269 (314)
T 2b2c_A          265 ICAKN  269 (314)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            88876

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.09  E-value=2.1e-10  Score=102.70  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=84.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..|++.+. ...|+.+|.+ .+++.+.++      ++    +..++..+.. ++..+++||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            457999999999999999998632 3579999999 888877664      22    1222222221 333458999999


Q ss_pred             ehhhhccCCCC-CChHHHHHHHhhhhcCCcEEEEEe-C----hHHHHHHHHHHhccCceeEeec--CCCCCCCCceEEEE
Q 026623          149 ANGVFSLYENT-CKPEDILLEMDRILRPEGAVIFRD-E----VDALNKVRKFAEGMRWDTKMMD--HEDGPLMPEKILIA  220 (235)
Q Consensus       149 a~~vl~h~~~~-~~~~~~L~Em~RVLRPGG~lii~d-~----~~~~~~i~~~~~~~~W~~~~~~--~~~~~~~~e~~l~~  220 (235)
                      ++...+..+.. -....++.++.|+|||||.+++.. .    .+....+.+..+.+-=.+..+.  ...-+.+.-.+++|
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~a  253 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLC  253 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEE
Confidence            86543221100 012478999999999999999985 2    1233444444443322332221  11111123357888


Q ss_pred             Eec
Q 026623          221 VKQ  223 (235)
Q Consensus       221 ~k~  223 (235)
                      .|.
T Consensus       254 s~~  256 (304)
T 2o07_A          254 SKN  256 (304)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            876

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.08  E-value=1.3e-09  Score=95.74  Aligned_cols=129  Identities=14%  Similarity=0.032  Sum_probs=82.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccccCCCCCCCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      ..++|||+|||+|+++..+.+.+   ..|+.+|.+ .+++.+.++-      +    +..++..+..+.   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence            45799999999999999998873   579999999 7777665431      1    112222222222   88999998


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEeecCCCCC-CCCceEEEEEec
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKMMDHEDGP-LMPEKILIAVKQ  223 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~~~~~~~~-~~~e~~l~~~k~  223 (235)
                      +.        .++..++.++.|+|||||.+++....     +....+.+.+++. +.........-| .+.-.+++|.|+
T Consensus       146 d~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~~  216 (262)
T 2cmg_A          146 LQ--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASFK  216 (262)
T ss_dssp             SS--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEESS
T ss_pred             CC--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeCC
Confidence            51        24457999999999999999997422     2233344444443 332222222222 233457788886


Q ss_pred             c
Q 026623          224 Y  224 (235)
Q Consensus       224 ~  224 (235)
                      +
T Consensus       217 ~  217 (262)
T 2cmg_A          217 T  217 (262)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.07  E-value=4.9e-11  Score=104.46  Aligned_cols=107  Identities=13%  Similarity=0.159  Sum_probs=70.9

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCC----CCCccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFST----YPRTYD  145 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~----~p~sFD  145 (235)
                      +...+..+|||+|||+|+++..|++.-.-...|+++|.+ .++..+.++    |+  +..++..++.++.    .+++||
T Consensus        79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD  158 (274)
T ss_dssp             HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence            344456799999999999998888631112479999999 888876654    44  2233333333432    157899


Q ss_pred             eeeeh------hhhccCC---------CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHAN------GVFSLYE---------NTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~------~vl~h~~---------~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+++      .++.+.+         -......+|.++.|+|||||.+++++
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            99986      2222110         00245789999999999999999985

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.06  E-value=1.8e-10  Score=103.32  Aligned_cols=142  Identities=11%  Similarity=0.067  Sum_probs=88.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------c----cccccccccC-CCCCCCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------L----IGIYHDWCEG-FSTYPRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------l----~~~~~~~~e~-l~~~p~sFDlV  147 (235)
                      ...+|||+|||+|.++..+++... ..+|+++|++ .+++.+.++-       +    +..+...+.. ++..+++||+|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            457999999999999999988631 3579999999 8888776541       1    1122222222 23235899999


Q ss_pred             eehhhhcc---CC-CCCChHHHHHHHhhhhcCCcEEEEEeC------hHHHHHHHHHHhccCceeEeecC--CCCCCCCc
Q 026623          148 HANGVFSL---YE-NTCKPEDILLEMDRILRPEGAVIFRDE------VDALNKVRKFAEGMRWDTKMMDH--EDGPLMPE  215 (235)
Q Consensus       148 ~a~~vl~h---~~-~~~~~~~~L~Em~RVLRPGG~lii~d~------~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e  215 (235)
                      +++...+.   -+ ..-....++.++.|+|||||.+++...      .+....+.+.++..--.+..+..  ... .+.-
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~-~g~~  234 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGF-FLNF  234 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGG-TEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CCeE
Confidence            99765433   11 000036899999999999999999732      12344455555544333332211  111 1234


Q ss_pred             eEEEEEecc
Q 026623          216 KILIAVKQY  224 (235)
Q Consensus       216 ~~l~~~k~~  224 (235)
                      .+++|.|++
T Consensus       235 ~~~~as~~~  243 (314)
T 1uir_A          235 GFLLASDAF  243 (314)
T ss_dssp             EEEEEESSS
T ss_pred             EEEEEECCC
Confidence            678898873

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.06  E-value=6.7e-11  Score=101.16  Aligned_cols=102  Identities=14%  Similarity=0.112  Sum_probs=62.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccC--CCCCC----Cccce
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEG--FSTYP----RTYDL  146 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~--l~~~p----~sFDl  146 (235)
                      ...+|||+|||+|.++..|+.+.. ...|+++|.+ .+++.+.++    |+   +..++..++.  +..++    ++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            356899999999999888876410 2479999999 899877654    43   2333333332  11222    68999


Q ss_pred             eeehhhhccCC-C-----------CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYE-N-----------TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~-~-----------~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+--+++.. +           ......++.++.|+|||||.+.+.+
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~  192 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK  192 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence            99986554332 0           0112356778888888888776553

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.06  E-value=2.1e-10  Score=104.06  Aligned_cols=141  Identities=13%  Similarity=0.123  Sum_probs=96.3

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcC---c---cccc-cccccCCCCCCCccceee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERG---L---IGIY-HDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rg---l---~~~~-~~~~e~l~~~p~sFDlV~  148 (235)
                      .+.....++|+|+|||+|.++.+|+++.. ...++..|.+.+++.+.++-   .   +... +|-   |...+..+|+++
T Consensus       174 ~~~~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~~~D~~~  249 (353)
T 4a6d_A          174 AFDLSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLPEADLYI  249 (353)
T ss_dssp             SSCGGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCT---TTSCCCCCSEEE
T ss_pred             hcCcccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccCHHHHHHHHHhhhhcccCceeeecCcc---ccCCCCCceEEE
Confidence            34455678999999999999999987532 24678888888888776541   1   1111 221   211225689999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------HH-------------------HHHHHHHHhccCcee
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------DA-------------------LNKVRKFAEGMRWDT  202 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------~~-------------------~~~i~~~~~~~~W~~  202 (235)
                      +.++||++++ .+...+|+++.|.|+|||.++|.|..       +.                   ..++++++++--|+.
T Consensus       250 ~~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          250 LARVLHDWAD-GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             EESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred             eeeecccCCH-HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            9999998853 34578999999999999999998621       00                   134667777778876


Q ss_pred             EeecCCCCCCCCceEEEEEecc
Q 026623          203 KMMDHEDGPLMPEKILIAVKQY  224 (235)
Q Consensus       203 ~~~~~~~~~~~~e~~l~~~k~~  224 (235)
                      ...... +  ....+++|+|..
T Consensus       329 v~v~~~-~--~~~~~i~ArKgt  347 (353)
T 4a6d_A          329 FQFKKT-G--AIYDAILARKGT  347 (353)
T ss_dssp             EEEECC-S--SSCEEEEEECCC
T ss_pred             EEEEEc-C--CceEEEEEEecC
Confidence            533222 2  234688999964

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.06  E-value=2.3e-10  Score=100.29  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...+|||+|||+|.|+..++.... ...|+++|.+ .++..+.+.    |+  +..++..++.++ .+++||+|+++...
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-LKDVADRVIMGYVH  196 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-CTTCEEEEEECCCS
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-ccCCceEEEECCcc
Confidence            357999999999999999987521 3479999999 888876553    33  223444444453 36799999885432


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                             +...++.++.|+|||||.+++++.
T Consensus       197 -------~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          197 -------KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             -------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence                   557899999999999999999964

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.05  E-value=2.4e-10  Score=103.06  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=87.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccccC-CCCCCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWCEG-FSTYPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~e~-l~~~p~sFDlV~  148 (235)
                      ...+|||+|||+|.++..+++... ...|+++|.+ .+++.+.++-      +    +..++..+.. ++..+++||+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            357999999999999999998631 3579999999 8998877652      1    1112221111 222358999999


Q ss_pred             ehhhhccCCCCCCh--HHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecC--CCCCCCCceEEE
Q 026623          149 ANGVFSLYENTCKP--EDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDH--EDGPLMPEKILI  219 (235)
Q Consensus       149 a~~vl~h~~~~~~~--~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e~~l~  219 (235)
                      ++.. .++.....+  ..++.++.|+|||||.+++...     .+.+..+.+.++..--.+..+..  +..+.+.-.+++
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~  273 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC  273 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence            8643 221100112  6999999999999999999742     12344444444444334443321  111112234788


Q ss_pred             EEecc
Q 026623          220 AVKQY  224 (235)
Q Consensus       220 ~~k~~  224 (235)
                      |.|++
T Consensus       274 as~~~  278 (321)
T 2pt6_A          274 CSKTD  278 (321)
T ss_dssp             EESST
T ss_pred             eeCCC
Confidence            88874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.04  E-value=8.1e-11  Score=101.81  Aligned_cols=97  Identities=10%  Similarity=0.083  Sum_probs=69.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCCCC------CCccc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFSTY------PRTYD  145 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~~~------p~sFD  145 (235)
                      ..++|||+|||+|.++..|+..-.-...|+++|.+ .++..+.++    |+   +..++..+ +.++..      +++||
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            35799999999999998887641002479999999 888876653    44   22222222 223322      58999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|++...      ..+...++.++.|+|||||.+++.+
T Consensus       159 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          159 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9998543      2356899999999999999999875

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.04  E-value=4.6e-10  Score=102.52  Aligned_cols=116  Identities=10%  Similarity=-0.009  Sum_probs=81.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CCC-CCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FST-YPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~~-~p~sFDlV~a~~  151 (235)
                      ...+|||+| |+|.++..++..+. ...|+++|++ .++..+.++    |+  +..++..... +|. .+++||+|+++.
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            467999999 99999999876542 2479999998 999987665    54  3334444444 664 357999999987


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCc-EEEEEeCh--H---HHHHHHHHHh-ccCcee
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEG-AVIFRDEV--D---ALNKVRKFAE-GMRWDT  202 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG-~lii~d~~--~---~~~~i~~~~~-~~~W~~  202 (235)
                      .+++.    ....+|.++.|+||||| .++++-..  .   .+..+.+.+. .....+
T Consensus       250 p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          250 PETLE----AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             CSSHH----HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             CCchH----HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            76543    25799999999999999 43555333  2   2255666665 555544

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.03  E-value=6e-10  Score=101.04  Aligned_cols=141  Identities=11%  Similarity=0.043  Sum_probs=86.2

Q ss_pred             ceEeeeccccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcC-c-----cccccccccCC-CCC-CCccceeeehhh
Q 026623           83 RNVMDMNAGLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERG-L-----IGIYHDWCEGF-STY-PRTYDLIHANGV  152 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rg-l-----~~~~~~~~e~l-~~~-p~sFDlV~a~~v  152 (235)
                      .+|||+|||+|.++.+|.+ .+.  ..|+.+|++ .+++.+.++- +     +..++..+..+ ..+ +++||+|+++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~--~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQ--SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTT--CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCC--cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            3999999999999999988 442  379999999 8888887652 2     12223322222 223 489999998644


Q ss_pred             hccCCC-CCChHHHHHHHhhhhcCCcEEEEEeC--h--HHHHHHHHHHhccCceeEeecC---CCCCCCCceEEEEEecc
Q 026623          153 FSLYEN-TCKPEDILLEMDRILRPEGAVIFRDE--V--DALNKVRKFAEGMRWDTKMMDH---EDGPLMPEKILIAVKQY  224 (235)
Q Consensus       153 l~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~--~--~~~~~i~~~~~~~~W~~~~~~~---~~~~~~~e~~l~~~k~~  224 (235)
                      .+.... .-.-..++.++.|+|||||.+++...  .  +....+.+.+++.-=.+..+..   ..+....+.|++|.|.-
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~p  248 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTE  248 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSC
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCC
Confidence            332111 00126899999999999999999853  1  2222222222222222333211   12222457889998865


Q ss_pred             c
Q 026623          225 W  225 (235)
Q Consensus       225 w  225 (235)
                      .
T Consensus       249 l  249 (317)
T 3gjy_A          249 F  249 (317)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.01  E-value=3.1e-10  Score=103.14  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=70.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCC-CCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTY-PRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~-p~sFDlV  147 (235)
                      ...+|||+|||+|.++..|++... ...|+++|.+ .++..+.++      |+    +..++..+.. ++.. +++||+|
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            457999999999999999998631 3579999999 888887664      22    1222222221 2223 4899999


Q ss_pred             eehhhhcc-CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSL-YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h-~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +++..... ....-....++.++.|+|||||.+++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            98654211 111001368999999999999999997

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.01  E-value=6.8e-10  Score=104.11  Aligned_cols=126  Identities=13%  Similarity=0.173  Sum_probs=81.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCC-CC-Ccccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFST-YP-RTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~-~p-~sFDlV  147 (235)
                      +...+..+|||+|||+|+++..|+..-.-...|+++|.+ .++..+.++    |+  +...+.....++. ++ ++||+|
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV  334 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEE
Confidence            444456799999999999999988631111469999999 888876655    54  2233333344442 44 789999


Q ss_pred             ee------hhhhccCCC------CCCh-------HHHHHHHhhhhcCCcEEEEEeCh----HHHHHHHHHHhcc-Ccee
Q 026623          148 HA------NGVFSLYEN------TCKP-------EDILLEMDRILRPEGAVIFRDEV----DALNKVRKFAEGM-RWDT  202 (235)
Q Consensus       148 ~a------~~vl~h~~~------~~~~-------~~~L~Em~RVLRPGG~lii~d~~----~~~~~i~~~~~~~-~W~~  202 (235)
                      ++      ..++++.++      ..++       ..+|.++.++|||||.+++++..    +--..++.+++.. .|+.
T Consensus       335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~  413 (450)
T 2yxl_A          335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL  413 (450)
T ss_dssp             EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred             EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence            96      334443321      1122       57899999999999999988631    1223455555543 4544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.00  E-value=2.2e-09  Score=99.86  Aligned_cols=106  Identities=17%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCC--CCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFS--TYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~--~~p~sFDlV~  148 (235)
                      +...+..+|||+|||+|+++..|++... ...|+++|.+ .++..+.++    |+ +..++..+..++  +.+++||+|+
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             cCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEE
Confidence            4445567999999999999999987531 1479999999 888876665    44 222333333333  2237899999


Q ss_pred             e------hhhhccCCC------CCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623          149 A------NGVFSLYEN------TCKP-------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a------~~vl~h~~~------~~~~-------~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +      ..++++.++      ..++       ..+|.++.+.|||||.+++++
T Consensus       321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6      234443321      0111       488999999999999999986

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.99  E-value=9.3e-10  Score=100.72  Aligned_cols=120  Identities=15%  Similarity=0.128  Sum_probs=83.7

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeeh
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      .....+|||+|||+|.++..++..+.+ ..|+++|.+ .++..+.++    |+   +...+...+.+++.+++||+|+++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            445679999999999999999877532 269999999 899876654    44   344555556677556999999997


Q ss_pred             hhhccCC-CCCCh----HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          151 GVFSLYE-NTCKP----EDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       151 ~vl~h~~-~~~~~----~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      --+..-. ....+    ..++.++.|+| +|+.++++.+.+.   +++.+....|++.
T Consensus       294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~~---~~~~~~~~G~~~~  347 (373)
T 3tm4_A          294 LPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEKKA---IEEAIAENGFEII  347 (373)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHHH---HHHHHHHTTEEEE
T ss_pred             CCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCHHH---HHHHHHHcCCEEE
Confidence            6654311 11122    57889999999 6666666665553   3456677778765

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.98  E-value=1.2e-10  Score=102.90  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=66.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      ++.....+|||+|||+|.++..|++.+   ..|+++|.+ .++..+.++    |+   +..++..+..+++  .+||+|+
T Consensus        24 ~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~--~~fD~vv   98 (285)
T 1zq9_A           24 AALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--PFFDTCV   98 (285)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--CCCSEEE
T ss_pred             cCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--hhhcEEE
Confidence            444456799999999999999998864   379999999 888887765    22   2334444443432  4899999


Q ss_pred             eh-----------hhhccCCCCCChH-HHHHHH--hhhhcCCcEEEE
Q 026623          149 AN-----------GVFSLYENTCKPE-DILLEM--DRILRPEGAVIF  181 (235)
Q Consensus       149 a~-----------~vl~h~~~~~~~~-~~L~Em--~RVLRPGG~lii  181 (235)
                      ++           .+|+|.+...... .+-+|+  +|+|||||.++.
T Consensus        99 ~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           99 ANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             EECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             EecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence            97           4444443211110 011455  489999999854

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.97  E-value=5.6e-10  Score=95.59  Aligned_cols=96  Identities=6%  Similarity=0.019  Sum_probs=68.1

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc---cccccc-ccCCCCC------CCcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDW-CEGFSTY------PRTY  144 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~-~e~l~~~------p~sF  144 (235)
                      +.++|||+|||+|..+..|+.. +. ...|+++|.+ .++..+.++    |+.   ..++.. .+.++..      +++|
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPD-DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3579999999999999888764 21 2479999999 888876543    542   222221 1222322      5899


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|++...-      .+...++.++.|+|||||.+++.+
T Consensus       149 D~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          149 DFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEECCch------HHHHHHHHHHHHhcCCCeEEEEec
Confidence            999985322      245789999999999999999975

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.97  E-value=1.7e-09  Score=96.23  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=96.1

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccC-CCCCCCc
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEG-FSTYPRT  143 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~-l~~~p~s  143 (235)
                      |..++..++  ...+|||+|||+|-|+..+..... ...+.++|++ .+++++.++    |+...+ ..++- ....+..
T Consensus       123 Y~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~~~~-~v~D~~~~~p~~~  198 (281)
T 3lcv_B          123 YRELFRHLP--RPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVPHRT-NVADLLEDRLDEP  198 (281)
T ss_dssp             HHHHGGGSC--CCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCCEEE-EECCTTTSCCCSC
T ss_pred             HHHHHhccC--CCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceE-EEeeecccCCCCC
Confidence            444444453  367999999999999999877521 3579999999 999987665    443221 11121 2234599


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-----------HHHHHHHHHHhccCceeEeecCCCCCC
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-----------DALNKVRKFAEGMRWDTKMMDHEDGPL  212 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-----------~~~~~i~~~~~~~~W~~~~~~~~~~~~  212 (235)
                      ||++.+.-+++|+.+..  ...+.++...|+|+|.||-.+..           .+-..++..+..-.|.+.....     
T Consensus       199 ~DvaL~lkti~~Le~q~--kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~-----  271 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQQ--RGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEI-----  271 (281)
T ss_dssp             CSEEEETTCHHHHHHHS--TTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEE-----
T ss_pred             cchHHHHHHHHHhhhhh--hHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeee-----
Confidence            99999999999985321  23444999999999999999861           1345577777777787664333     


Q ss_pred             CCceEEEEEe
Q 026623          213 MPEKILIAVK  222 (235)
Q Consensus       213 ~~e~~l~~~k  222 (235)
                      ..|-+.+.+|
T Consensus       272 ~nEl~y~i~k  281 (281)
T 3lcv_B          272 GNELIYVIQK  281 (281)
T ss_dssp             TTEEEEEEC-
T ss_pred             cCeeEEEecC
Confidence            3566666554

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.95  E-value=3.2e-09  Score=95.63  Aligned_cols=143  Identities=13%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCC----ceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCC-CCCcccee
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKS----WVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFST-YPRTYDLI  147 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~----~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~-~p~sFDlV  147 (235)
                      .....+|||+|||+|+|+..+.+...    -..+++++|.+ .++.++...    |+ +..++.  ..+.. .++.||+|
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~--D~l~~~~~~~fD~I  205 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ--DGLANLLVDPVDVV  205 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES--CTTSCCCCCCEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEEC--CCCCccccCCccEE
Confidence            33567999999999999888765310    12579999999 888876653    44 122222  22322 34899999


Q ss_pred             eehhhhccCCCC--------------CCh-HHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecC
Q 026623          148 HANGVFSLYENT--------------CKP-EDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDH  207 (235)
Q Consensus       148 ~a~~vl~h~~~~--------------~~~-~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~  207 (235)
                      +++--|++++..              .+. ..++.++.+.|||||.+++..+     .+....+.+.+..-.|...+...
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l  285 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL  285 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence            999887665311              011 2589999999999999988862     22245666665555553322221


Q ss_pred             C----CCCCCCceEEEEEec
Q 026623          208 E----DGPLMPEKILIAVKQ  223 (235)
Q Consensus       208 ~----~~~~~~e~~l~~~k~  223 (235)
                      .    .+......+++.+|+
T Consensus       286 p~~~F~~~~~~~~i~vl~k~  305 (344)
T 2f8l_A          286 PETLFKSEQARKSILILEKA  305 (344)
T ss_dssp             CGGGSCC-CCCEEEEEEEEC
T ss_pred             ChhhccCCCCceEEEEEECC
Confidence            1    122245678888774

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.95  E-value=6.1e-10  Score=105.82  Aligned_cols=103  Identities=17%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCC-CCCccceeeeh--
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFST-YPRTYDLIHAN--  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~-~p~sFDlV~a~--  150 (235)
                      +..+|||+|||+|+.+..|++.-.-...|+++|.+ .++..+.++    |+  +...+..+..++. .+++||+|+++  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            56799999999999998888641112369999999 888876654    54  2233444444443 45899999973  


Q ss_pred             ----hhhccCCCCC---C----------hHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 ----GVFSLYENTC---K----------PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ----~vl~h~~~~~---~----------~~~~L~Em~RVLRPGG~lii~d  183 (235)
                          .++.+.++..   .          ...+|.++.|+|||||.+++++
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence                3444322110   0          1478999999999999999985

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.94  E-value=8e-10  Score=104.88  Aligned_cols=126  Identities=14%  Similarity=0.282  Sum_probs=79.9

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCC-CCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFS-TYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~-~~p~sFDlV~a  149 (235)
                      +...+..+|||+|||+|+.+..|++.-.-...|+++|.+ .++..+.++    |+ +...+.....++ +.+++||+|++
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEE
Confidence            344456799999999999998888631112369999999 888876654    44 223333333344 24689999995


Q ss_pred             ------hhhhccCCCC------CCh-------HHHHHHHhhhhcCCcEEEEEeC----hHHHHHHHHHHhcc-Ccee
Q 026623          150 ------NGVFSLYENT------CKP-------EDILLEMDRILRPEGAVIFRDE----VDALNKVRKFAEGM-RWDT  202 (235)
Q Consensus       150 ------~~vl~h~~~~------~~~-------~~~L~Em~RVLRPGG~lii~d~----~~~~~~i~~~~~~~-~W~~  202 (235)
                            ..++.+.++.      .++       ..+|.++.|+|||||.++.++.    .+--..++.+++.. .|++
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l  253 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRL  253 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEE
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEE
Confidence                  2334332211      111       6799999999999999999752    12223345555544 3443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.94  E-value=9e-10  Score=101.42  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=77.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccccC-CCCC---CCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWCEG-FSTY---PRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~e~-l~~~---p~sFDlV  147 (235)
                      ...+|||+|||+|.|+..++..+  ...|+++|.+ .++..+.+.    |+.    ..++..+.. ++..   .++||+|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            35799999999999999998765  3479999999 888876653    432    122322222 2211   3589999


Q ss_pred             eehhhh-----ccCCC-CCChHHHHHHHhhhhcCCcEEEEEeChH------HHHHHHHHHhccCce
Q 026623          148 HANGVF-----SLYEN-TCKPEDILLEMDRILRPEGAVIFRDEVD------ALNKVRKFAEGMRWD  201 (235)
Q Consensus       148 ~a~~vl-----~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~~~------~~~~i~~~~~~~~W~  201 (235)
                      +++--.     .+..+ ..++..++.++.++|+|||.++++....      +.+.+...+.....+
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            984222     11111 0123457888899999999999996432      344455556666555

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.91  E-value=5.5e-09  Score=90.74  Aligned_cols=133  Identities=13%  Similarity=0.060  Sum_probs=92.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---cccc-ccccCCCCCC-Cccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYH-DWCEGFSTYP-RTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~-~~~e~l~~~p-~sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++.+|+..+. ...|+++|.+ .++..+.+.    |+.   ...+ |..+.+  .+ +.||+|+...
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~--~~~~~~D~IviaG   98 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF--EEADNIDTITICG   98 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--CGGGCCCEEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--ccccccCEEEEeC
Confidence            47899999999999999988742 4579999999 888876654    442   2222 222222  23 4799987544


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      +--.     .+..+|.+..+.|+++|+||++-... ...+.+.+....|.+.....-.....--.++.+.+.
T Consensus        99 mGg~-----lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~  164 (230)
T 3lec_A           99 MGGR-----LIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHG  164 (230)
T ss_dssp             ECHH-----HHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred             CchH-----HHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence            4421     35789999999999999999998653 567888899999998743321111134567777764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.90  E-value=9.2e-10  Score=101.18  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-c---ccccccccCC-CC---CCCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-I---GIYHDWCEGF-ST---YPRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~---~~~~~~~e~l-~~---~p~sFDlV  147 (235)
                      ...+|||+|||+|+|+..++..+  ...|+++|.+ .++..+.+.    |+ .   ..++..+..+ +.   .+++||+|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            35799999999999999999875  3479999999 888876553    44 2   1222222222 11   14689999


Q ss_pred             eehhhhc-----cC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          148 HANGVFS-----LY-ENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       148 ~a~~vl~-----h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +++--..     ++ ........++.++.++|+|||.++++.+.
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9863211     00 01135678999999999999999998643

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.90  E-value=6.3e-09  Score=91.59  Aligned_cols=132  Identities=13%  Similarity=-0.030  Sum_probs=93.2

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCC-CCCCCccceeeehhhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGF-STYPRTYDLIHANGVF  153 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l-~~~p~sFDlV~a~~vl  153 (235)
                      ....+|||+|||+|-|+.++.  +  ...++++|++ .+++++.++    |.... ...|+.. ...+.+||+|.+.-++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~--~~~y~a~DId~~~i~~ar~~~~~~g~~~~-~~v~D~~~~~~~~~~DvvLllk~l  178 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--G--IASVWGCDIHQGLGDVITPFAREKDWDFT-FALQDVLCAPPAEAGDLALIFKLL  178 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--T--CSEEEEEESBHHHHHHHHHHHHHTTCEEE-EEECCTTTSCCCCBCSEEEEESCH
T ss_pred             CCCCeEEEecCCccHHHHHhc--c--CCeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEeecccCCCCCCcchHHHHHHH
Confidence            457799999999999999887  3  3479999999 999987665    32111 1112222 2355899999999888


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-----------HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-----------ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-----------~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      ||+.+..  ...+.++..-|+|+|.+|-.+...           +-..+++.+..-.|.+......     .|-+.+.+|
T Consensus       179 h~LE~q~--~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~-----nEl~~~i~~  251 (253)
T 3frh_A          179 PLLEREQ--AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIG-----TELIYLIKK  251 (253)
T ss_dssp             HHHHHHS--TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEET-----TEEEEEEEE
T ss_pred             HHhhhhc--hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecC-----ceEEEEEec
Confidence            8774322  234448888999999999887221           2456778888889988765443     677888777


Q ss_pred             c
Q 026623          223 Q  223 (235)
Q Consensus       223 ~  223 (235)
                      .
T Consensus       252 ~  252 (253)
T 3frh_A          252 N  252 (253)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.87  E-value=4.9e-11  Score=102.54  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCC-Cccceeeeh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYP-RTYDLIHAN  150 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p-~sFDlV~a~  150 (235)
                      ++.....+|||+|||+|.++..|++.+   .+|+++|.+ .++..+.++-    .+..++...+.+++.+ ++| .|+++
T Consensus        25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n  100 (245)
T 1yub_A           25 LNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGN  100 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEE
T ss_pred             cCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEe
Confidence            444456799999999999999998865   479999999 8887665542    2334455556666443 689 66665


Q ss_pred             h-----------hhccCCCCCChHHHH----HHHhhhhcCCcEEEEEe
Q 026623          151 G-----------VFSLYENTCKPEDIL----LEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~-----------vl~h~~~~~~~~~~L----~Em~RVLRPGG~lii~d  183 (235)
                      -           ++.|.   .....++    .++.|+|||||.+.+..
T Consensus       101 ~Py~~~~~~~~~~~~~~---~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          101 IPYHLSTQIIKKVVFES---RASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             CCSSSCHHHHHHHHHHC---CCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             CCccccHHHHHHHHhCC---CCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            2           22232   1233455    66999999999877654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.86  E-value=6.2e-09  Score=91.21  Aligned_cols=133  Identities=11%  Similarity=0.083  Sum_probs=90.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---ccc-ccccCCCCCCC-ccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IYH-DWCEGFSTYPR-TYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~-~~~e~l~~~p~-sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++.+|+..+. ...|+++|++ .++..+.+.    |+..   ... |..+.+  .++ .||+|+...
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~--~~~~~~D~Iviag   98 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI--EKKDAIDTIVIAG   98 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--CGGGCCCEEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc--CccccccEEEEeC
Confidence            47899999999999999988642 4579999999 888877665    5522   222 222222  234 699988644


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~  223 (235)
                      +--     .-+..+|.+..+.|+|+|+||++-... ...+++.+....|.+.....-.....--.+|.+.+.
T Consensus        99 mGg-----~lI~~IL~~~~~~L~~~~~lIlq~~~~-~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~  164 (244)
T 3gnl_A           99 MGG-----TLIRTILEEGAAKLAGVTKLILQPNIA-AWQLREWSEQNNWLITSEAILREDNKVYEIMVLAPS  164 (244)
T ss_dssp             ECH-----HHHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             Cch-----HHHHHHHHHHHHHhCCCCEEEEEcCCC-hHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence            432     135689999999999999999997643 557788888889987432211001123456676653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.86  E-value=3.1e-09  Score=98.55  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=67.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc-cccccccC-CCCCCCccceeeehhhhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG-IYHDWCEG-FSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~-~~~~~~e~-l~~~p~sFDlV~a~~vl~  154 (235)
                      ..+|||+|||+|+|+.+++..+.   .|+++|.| .++..+.++    |+.. ..+..+.. ++..++.||+|+++--..
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            57999999999999999998762   39999999 888876654    4422 11222221 223354599999853211


Q ss_pred             cCCCC-------CChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          155 LYENT-------CKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       155 h~~~~-------~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      .- ..       .+...++.++.|+|||||++++...
T Consensus       292 ~~-~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          292 VK-RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CS-SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            00 00       1335889999999999999997753

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.86  E-value=3.5e-08  Score=92.01  Aligned_cols=142  Identities=15%  Similarity=0.198  Sum_probs=88.5

Q ss_pred             HHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-C---CC
Q 026623           71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-F---ST  139 (235)
Q Consensus        71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l---~~  139 (235)
                      ..++..++.....+|||+|||+|.|+..|+...   ..|+++|.+ +++..+.++    |+  +..++...+. +   ++
T Consensus       276 ~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~  352 (433)
T 1uwv_A          276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW  352 (433)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred             HHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence            334444544446799999999999999999873   479999999 888876653    33  2233333332 2   22


Q ss_pred             CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE---eecCCCCCCCCce
Q 026623          140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK---MMDHEDGPLMPEK  216 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~---~~~~~~~~~~~e~  216 (235)
                      .+++||+|+++-      .+.....++..+.+ ++|++.++++-+...+.+--..+....|++.   ..|.-....+-|-
T Consensus       353 ~~~~fD~Vv~dP------Pr~g~~~~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~  425 (433)
T 1uwv_A          353 AKNGFDKVLLDP------ARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES  425 (433)
T ss_dssp             GTTCCSEEEECC------CTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEE
T ss_pred             hcCCCCEEEECC------CCccHHHHHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEE
Confidence            347899999731      22233455555544 8999999999887754333333343456553   2333333446676


Q ss_pred             EEEEEe
Q 026623          217 ILIAVK  222 (235)
Q Consensus       217 ~l~~~k  222 (235)
                      +.+-+|
T Consensus       426 v~ll~r  431 (433)
T 1uwv_A          426 MVLFSR  431 (433)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            666554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.85  E-value=7.7e-09  Score=89.50  Aligned_cols=130  Identities=13%  Similarity=0.099  Sum_probs=90.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cc-cccccCCCCCCC-ccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IY-HDWCEGFSTYPR-TYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~-~~~~e~l~~~p~-sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++.+|+..+. ...|+++|.+ .++..+.+.    |+..   .. .|..+.++  ++ .||+|+...
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~--~~~~~D~IviaG   92 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE--ETDQVSVITIAG   92 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC--GGGCCCEEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc--cCcCCCEEEEcC
Confidence            46899999999999999988642 4579999999 888876553    5422   22 22223333  23 799887644


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeec--CCCCCCCCceEEEEEe
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMD--HEDGPLMPEKILIAVK  222 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~--~~~~~~~~e~~l~~~k  222 (235)
                      +--     ..+..+|.+..+.|+|+|+||++-.. -...+.+.+....|.+....  .|++  .--.+|++.+
T Consensus        93 ~Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~~-~~~~vr~~L~~~Gf~i~~e~lv~e~~--~~Yeii~~~~  157 (225)
T 3kr9_A           93 MGG-----RLIARILEEGLGKLANVERLILQPNN-REDDLRIWLQDHGFQIVAESILEEAG--KFYEILVVEA  157 (225)
T ss_dssp             ECH-----HHHHHHHHHTGGGCTTCCEEEEEESS-CHHHHHHHHHHTTEEEEEEEEEEETT--EEEEEEEEEE
T ss_pred             CCh-----HHHHHHHHHHHHHhCCCCEEEEECCC-CHHHHHHHHHHCCCEEEEEEEEEECC--EEEEEEEEEe
Confidence            321     13578999999999999999998763 45677888889999876432  1211  2345677765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.85  E-value=6.4e-10  Score=110.11  Aligned_cols=99  Identities=14%  Similarity=0.258  Sum_probs=71.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccccC-CCCCCCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWCEG-FSTYPRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~e~-l~~~p~sFDlV~a~~  151 (235)
                      ..+|||+|||+|+|+.+++..+.  ..|+++|.| .++..+.+.    |+.    ..++..+.. ++...++||+|+++-
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            56999999999999999887653  469999999 899877654    432    122222222 333458999999843


Q ss_pred             -----------hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          152 -----------VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       152 -----------vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                                 ++.+.   .+...++.++.|+|||||+++++.+.
T Consensus       618 P~f~~~~~~~~~~~~~---~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQ---RDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CSBC-------CCBHH---HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccCCccchhHHHHH---HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence                       12211   14568899999999999999999765

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.85  E-value=5.6e-10  Score=102.30  Aligned_cols=102  Identities=18%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCC-CC---CCCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGF-ST---YPRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l-~~---~p~sFDlV~a  149 (235)
                      ...+|||+|||+|+|+..++..   ...|+++|.+ .++..+.+.    |+  +..++..++.+ +.   .+++||+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            4679999999999999999875   4689999999 888876654    43  22233322222 11   1579999998


Q ss_pred             hhhhccCCCC------CChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          150 NGVFSLYENT------CKPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       150 ~~vl~h~~~~------~~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +--.......      .....++.++.++|+|||.++++...
T Consensus       286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4321110000      13467999999999999999999643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.85  E-value=5.4e-10  Score=102.62  Aligned_cols=118  Identities=10%  Similarity=0.001  Sum_probs=77.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCC-CC---CCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGF-ST---YPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l-~~---~p~sFDlV~  148 (235)
                      ...+|||+|||+|+|+..++..+  ...|+++|.+ .++..+.+.    |+.   ..++..+..+ +.   .+++||+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            35799999999999999999875  3479999999 888876553    432   2233222222 11   147999999


Q ss_pred             ehhh---------hccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH------HHHHHHHHHhccCceeE
Q 026623          149 ANGV---------FSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD------ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       149 a~~v---------l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~------~~~~i~~~~~~~~W~~~  203 (235)
                      ++--         +++.   .+...++.++.++|||||.+++.....      ....+.+.+......+.
T Consensus       295 ~dpP~~~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  361 (396)
T 2as0_A          295 LDPPAFVQHEKDLKAGL---RAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLK  361 (396)
T ss_dssp             ECCCCSCSSGGGHHHHH---HHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEE
T ss_pred             ECCCCCCCCHHHHHHHH---HHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            8422         1111   245689999999999999998885321      23334444444444444

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.82  E-value=9.7e-09  Score=93.67  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC-
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN-  158 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~-  158 (235)
                      ...+|||+|||+|.|+.++.++-.-..+++++|.+ .++..+ .+  +..++......+ .++.||+|+++--+..... 
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~--~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PW--AEGILADFLLWE-PGEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TT--EEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CC--CcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence            34599999999999999998641012479999998 776655 11  122222222222 2379999999622211100 


Q ss_pred             ------------------------CCC-hHHHHHHHhhhhcCCcEEEEEeChH-----HHHHHHHHHhccCceeEee-c-
Q 026623          159 ------------------------TCK-PEDILLEMDRILRPEGAVIFRDEVD-----ALNKVRKFAEGMRWDTKMM-D-  206 (235)
Q Consensus       159 ------------------------~~~-~~~~L~Em~RVLRPGG~lii~d~~~-----~~~~i~~~~~~~~W~~~~~-~-  206 (235)
                                              ..+ ...++..+.++|||||.+++.....     ....+.+.+...++...+. . 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~~  194 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGE  194 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEES
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEECCC
Confidence                                    001 2367889999999999988876443     3456677666556622221 1 


Q ss_pred             CCCCCCCCceEEEEEec
Q 026623          207 HEDGPLMPEKILIAVKQ  223 (235)
Q Consensus       207 ~~~~~~~~e~~l~~~k~  223 (235)
                      .-.+....-.+++.+|.
T Consensus       195 ~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          195 VFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             CSTTCCCCEEEEEEESS
T ss_pred             CCCCCCccEEEEEEEeC
Confidence            11122234456666763

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.81  E-value=5.9e-09  Score=92.93  Aligned_cols=135  Identities=15%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHH-HH---cCc-cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVI-YE---RGL-IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~-~~---Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...+|||+|||+|+++...+.+ +  +..++++|+. ++ ... ..   .|. +......++...+.++.||+|+|....
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~--~~~v~g~dVGvDl-~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKE--VSGVKGFTLGRDG-HEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTT--EEEEEEECCCCTT-CCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcC--CCcceeEEEeccC-cccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence            3568999999999999977654 4  4567777776 32 110 00   111 111232234445445899999998766


Q ss_pred             ccCCCC-CC---hHHHHHHHhhhhcCC-cEEEEEeCh----H---HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEE
Q 026623          154 SLYENT-CK---PEDILLEMDRILRPE-GAVIFRDEV----D---ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAV  221 (235)
Q Consensus       154 ~h~~~~-~~---~~~~L~Em~RVLRPG-G~lii~d~~----~---~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~  221 (235)
                      + .... -|   ...+|..+.++|||| |.|++.--.    +   ++..++...++.+.  .++  -+-....|.++||+
T Consensus       151 n-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~--~KP--aSR~~S~E~Y~V~~  225 (277)
T 3evf_A          151 S-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVI--RNP--LSRNSTHEMYYVSG  225 (277)
T ss_dssp             C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEE--CCT--TSCTTCCCEEEESS
T ss_pred             C-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEE--EeC--CCCCCCCceEEEEe
Confidence            5 2110 01   114578889999999 999997533    2   23344444443332  233  22222589999986


Q ss_pred             ec
Q 026623          222 KQ  223 (235)
Q Consensus       222 k~  223 (235)
                      .+
T Consensus       226 ~r  227 (277)
T 3evf_A          226 AR  227 (277)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.80  E-value=2.9e-09  Score=100.83  Aligned_cols=125  Identities=16%  Similarity=0.221  Sum_probs=78.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCC-CCCCcccee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFS-TYPRTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~-~~p~sFDlV  147 (235)
                      +...+..+|||+|||+|+.+..|+.. +. ...|+++|.+ .++..+.++    |+.  ...+...+.++ .++++||+|
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~-~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~I  179 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKG-KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRI  179 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTT-CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEE
Confidence            34445679999999999998888763 11 2369999999 888876553    542  22333333343 246899999


Q ss_pred             eehh------hhccCC------CCCCh-------HHHHHHHhhhhcCCcEEEEEeC----hHHHHHHHHHHhccCcee
Q 026623          148 HANG------VFSLYE------NTCKP-------EDILLEMDRILRPEGAVIFRDE----VDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       148 ~a~~------vl~h~~------~~~~~-------~~~L~Em~RVLRPGG~lii~d~----~~~~~~i~~~~~~~~W~~  202 (235)
                      +++-      ++.+-+      ...++       ..+|.++.|+|||||.++.++.    .+--.-|+.+++...+++
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l  257 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTI  257 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEE
Confidence            9732      232111      00011       2789999999999999999752    122334555655554443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.79  E-value=1.3e-08  Score=90.51  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=79.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +.+|||+|||+|.|+..++.++.  ..|+++|.+ ..++.+.+.    |+   +..++.++..++ ..+.||.|+++...
T Consensus       126 g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYVV  202 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS
T ss_pred             CCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCCC
Confidence            57999999999999988877652  469999998 777765442    44   233444444443 23899999874322


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-------hHHHHHHHHHHhccCceeEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE-------VDALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-------~~~~~~i~~~~~~~~W~~~~  204 (235)
                             ....+|.+..++|||||++.+-+.       .+..+.++++++...+++..
T Consensus       203 -------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~  253 (278)
T 3k6r_A          203 -------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             -------cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence                   234678888899999999876532       12356778888888887754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.77  E-value=1.5e-09  Score=93.76  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCC-Ccccee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYP-RTYDLI  147 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p-~sFDlV  147 (235)
                      +..++.....+|||+|||+|.++..|++.+   ..|+++|.+ .++..+.++-    -+..++..++.+++.+ ..|+ |
T Consensus        23 ~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-v   98 (244)
T 1qam_A           23 MTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-I   98 (244)
T ss_dssp             HTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-E
T ss_pred             HHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-E
Confidence            333444456799999999999999999875   479999999 8998877652    2344555566677543 4564 4


Q ss_pred             eehh-----------hhccCCCCCChHHHH---HH-HhhhhcCCcEE
Q 026623          148 HANG-----------VFSLYENTCKPEDIL---LE-MDRILRPEGAV  179 (235)
Q Consensus       148 ~a~~-----------vl~h~~~~~~~~~~L---~E-m~RVLRPGG~l  179 (235)
                      +++.           +++|..   ....++   .| ..|+|+|||.+
T Consensus        99 v~nlPy~~~~~~l~~~l~~~~---~~~~~lm~q~e~a~rll~~~G~l  142 (244)
T 1qam_A           99 FGNIPYNISTDIIRKIVFDSI---ADEIYLIVEYGFAKRLLNTKRSL  142 (244)
T ss_dssp             EEECCGGGHHHHHHHHHHSCC---CSEEEEEEEHHHHHHHTCTTSHH
T ss_pred             EEeCCcccCHHHHHHHHhcCC---CCeEEEEEEHHHHHHHhcCCcch
Confidence            4432           222221   112233   35 78888888744

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.75  E-value=7.3e-09  Score=93.50  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||+|||+|.|+.. +. +  ...|+++|.+ .++..+.+.    |+   +..++..+..+.   ++||+|+++--.
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~  268 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK  268 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred             CCEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence            57999999999999999 76 3  3579999999 888876554    43   223344343333   899999984211


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                             ....++.++.++|+|||.+++.+.
T Consensus       269 -------~~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          269 -------FAHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             -------TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -------hHHHHHHHHHHHcCCCCEEEEEEe
Confidence                   224889999999999999998753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.71  E-value=2e-08  Score=89.30  Aligned_cols=95  Identities=15%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      ++.....+|||+|||+|.++..|++.+   ..|+++|.+ .++..+.++    |+  +..++..++.++  ..+||+|++
T Consensus        38 ~~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~--~~~~D~Vv~  112 (299)
T 2h1r_A           38 AKIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV--FPKFDVCTA  112 (299)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC--CCCCSEEEE
T ss_pred             cCCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC--cccCCEEEE
Confidence            333456799999999999999999874   479999999 888877664    33  233444344443  258999999


Q ss_pred             hhhhccCCCCCChHHHH---------------HHHhhhhcCCcE
Q 026623          150 NGVFSLYENTCKPEDIL---------------LEMDRILRPEGA  178 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L---------------~Em~RVLRPGG~  178 (235)
                      +.-++...  ..+..+|               .+..|+++|+|.
T Consensus       113 n~py~~~~--~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          113 NIPYKISS--PLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             ECCGGGHH--HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             cCCccccc--HHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            65443211  1122333               447899999885

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.67  E-value=8.4e-08  Score=89.53  Aligned_cols=145  Identities=16%  Similarity=0.084  Sum_probs=87.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCC------------CceeEEeecCcc-ccHHHHHH----cCcc----cccccccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPK------------SWVMNVVPTTAK-NTLGVIYE----RGLI----GIYHDWCE  135 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~------------~~~~~V~~~D~s-~~L~~~~~----Rgl~----~~~~~~~e  135 (235)
                      +......+|||.|||+|+|+..+.+.-            .-..++.++|.+ .++..+..    +|+.    ...+....
T Consensus       167 l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l  246 (445)
T 2okc_A          167 INPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSL  246 (445)
T ss_dssp             HCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTT
T ss_pred             hCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCC
Confidence            344456789999999999987766420            001358999998 77776654    3442    22333222


Q ss_pred             CCCCCCCccceeeehhhhccCCCCCC--------------hHHHHHHHhhhhcCCcEEEEEeChHH------HHHHHH-H
Q 026623          136 GFSTYPRTYDLIHANGVFSLYENTCK--------------PEDILLEMDRILRPEGAVIFRDEVDA------LNKVRK-F  194 (235)
Q Consensus       136 ~l~~~p~sFDlV~a~~vl~h~~~~~~--------------~~~~L~Em~RVLRPGG~lii~d~~~~------~~~i~~-~  194 (235)
                      ..+ ....||+|+++--|.+......              -..++.++.|.|||||.+++..+...      -..+.+ +
T Consensus       247 ~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L  325 (445)
T 2okc_A          247 EKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL  325 (445)
T ss_dssp             TSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred             CCc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHH
Confidence            222 2258999999987775422111              13789999999999999987764432      234554 4


Q ss_pred             HhccCceeEeecCCC----CCCCCceEEEEEec
Q 026623          195 AEGMRWDTKMMDHED----GPLMPEKILIAVKQ  223 (235)
Q Consensus       195 ~~~~~W~~~~~~~~~----~~~~~e~~l~~~k~  223 (235)
                      .+.......+ ..+.    +....-.|++.+|.
T Consensus       326 ~~~~~l~~ii-~lp~~~F~~t~v~t~Il~~~k~  357 (445)
T 2okc_A          326 LQDFNLHTIL-RLPTGIFYAQGVKANVLFFSKG  357 (445)
T ss_dssp             HHHEEEEEEE-ECCSSSSSSTTCCEEEEEEEES
T ss_pred             HhcCcEEEEE-eCCCCCccCCCCCEEEEEEECC
Confidence            5555554433 2222    22234566777663

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.63  E-value=7.1e-08  Score=90.22  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.|+..|++..   ..|+++|.+ +++..+.++    |+ +..+...++.+.  +.+||+|+++--   
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~--~~~fD~Vv~dPP---  362 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS--VKGFDTVIVDPP---  362 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC--CTTCSEEEECCC---
T ss_pred             CCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcC--ccCCCEEEEcCC---
Confidence            5699999999999999998864   379999999 888876654    33 233343333332  348999998432   


Q ss_pred             CCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHHH
Q 026623          156 YENTCKP-EDILLEMDRILRPEGAVIFRDEVDAL  188 (235)
Q Consensus       156 ~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~~  188 (235)
                         +... ..++..+ +.|+|||.++++-+...+
T Consensus       363 ---r~g~~~~~~~~l-~~l~p~givyvsc~p~tl  392 (425)
T 2jjq_A          363 ---RAGLHPRLVKRL-NREKPGVIVYVSCNPETF  392 (425)
T ss_dssp             ---TTCSCHHHHHHH-HHHCCSEEEEEESCHHHH
T ss_pred             ---ccchHHHHHHHH-HhcCCCcEEEEECChHHH
Confidence               1222 3455555 469999999999877643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.61  E-value=7.9e-08  Score=88.88  Aligned_cols=100  Identities=12%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             CceEeeeccccchHHHHHh--------cC------CCceeEEeecCcc-ccHHHHHHcCcccc-----------------
Q 026623           82 YRNVMDMNAGLGGFAAALE--------SP------KSWVMNVVPTTAK-NTLGVIYERGLIGI-----------------  129 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~--------~~------~~~~~~V~~~D~s-~~L~~~~~Rgl~~~-----------------  129 (235)
                      ..+|+|+|||+|..+..+.        ++      ..-...|.--|.+ +.....+.. |...                 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~-L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQL-LPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHH-SCCBCCCC--CCC---CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhh-hhhhhhhcchhhhccccCCCc
Confidence            4689999999998766651        11      1124678888887 665543332 1100                 


Q ss_pred             --ccccccCC---CCCCCccceeeehhhhccCCCCC-----------------------------------ChHHHHHHH
Q 026623          130 --YHDWCEGF---STYPRTYDLIHANGVFSLYENTC-----------------------------------KPEDILLEM  169 (235)
Q Consensus       130 --~~~~~e~l---~~~p~sFDlV~a~~vl~h~~~~~-----------------------------------~~~~~L~Em  169 (235)
                        +...-.+|   .|.+++||+||++..||++.+..                                   |+..+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000111   12349999999999999886332                                   445679999


Q ss_pred             hhhhcCCcEEEEE
Q 026623          170 DRILRPEGAVIFR  182 (235)
Q Consensus       170 ~RVLRPGG~lii~  182 (235)
                      .|.|||||.++++
T Consensus       212 a~eL~pGG~mvl~  224 (374)
T 3b5i_A          212 AAEVKRGGAMFLV  224 (374)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEE
Confidence            9999999999998

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.49  E-value=5.4e-07  Score=82.92  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             cccccccccchHHHHHHHHHHHHHhh----h--hC--CCCCceEeeeccccchHHHHHhcC---------------CCce
Q 026623           50 GVTGKSYQEDSKLWKKHVNAYKKMNS----L--IG--TRRYRNVMDMNAGLGGFAAALESP---------------KSWV  106 (235)
Q Consensus        50 g~~~~~f~~d~~~W~~~v~~y~~~l~----~--l~--~~~~r~VLD~GCG~G~faa~L~~~---------------~~~~  106 (235)
                      |.-+..|...+..=+..+..-+.++.    .  ..  ....-+|+|+||++|..+..+...               +.-.
T Consensus        12 g~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe   91 (359)
T 1m6e_X           12 GAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPE   91 (359)
T ss_dssp             CTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            44455677777753333333333331    1  11  223467999999999765444332               2336


Q ss_pred             eEEeecCcc-ccHHHHHHcCccc--------cccccccCC---CCCCCccceeeehhhhccCCCCC--------------
Q 026623          107 MNVVPTTAK-NTLGVIYERGLIG--------IYHDWCEGF---STYPRTYDLIHANGVFSLYENTC--------------  160 (235)
Q Consensus       107 ~~V~~~D~s-~~L~~~~~Rgl~~--------~~~~~~e~l---~~~p~sFDlV~a~~vl~h~~~~~--------------  160 (235)
                      ..|.--|.+ +....++.+ |..        .+...-.+|   .|.+++||+||++..||.+.+..              
T Consensus        92 ~~v~~nDLp~NDFntlF~~-L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~  170 (359)
T 1m6e_X           92 YQIFLNDLPGNDFNAIFRS-LPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMAN  170 (359)
T ss_dssp             EEEEEEECTTSCHHHHHTT-TTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCS
T ss_pred             eEEEecCCCchHHHHHHHh-cchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecC
Confidence            789999998 888877655 111        011111221   22349999999999999875322              


Q ss_pred             ----------------ChHHHHHHHhhhhcCCcEEEEE
Q 026623          161 ----------------KPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       161 ----------------~~~~~L~Em~RVLRPGG~lii~  182 (235)
                                      |+..+|.-..|.|+|||.+++.
T Consensus       171 ~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          171 TCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence                            1234588889999999999998

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.35  E-value=6.6e-07  Score=83.02  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=59.9

Q ss_pred             CceEeeeccccchHHHHHhcC----------------CCceeEEeecCcc-ccHHHH------------HHcCc-cc--c
Q 026623           82 YRNVMDMNAGLGGFAAALESP----------------KSWVMNVVPTTAK-NTLGVI------------YERGL-IG--I  129 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~----------------~~~~~~V~~~D~s-~~L~~~------------~~Rgl-~~--~  129 (235)
                      .-+|+|+||++|..+..+...                +.-...|.--|.+ +-....            .+.|. .+  .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            468999999999766544321                1125677788876 433211            11121 00  0


Q ss_pred             ccccccCC---CCCCCccceeeehhhhccCCCCC-ChH-----------------------------------HHHHHHh
Q 026623          130 YHDWCEGF---STYPRTYDLIHANGVFSLYENTC-KPE-----------------------------------DILLEMD  170 (235)
Q Consensus       130 ~~~~~e~l---~~~p~sFDlV~a~~vl~h~~~~~-~~~-----------------------------------~~L~Em~  170 (235)
                      +...-.+|   .|.+++||+||++..||.+.+.. .+.                                   .+|.-..
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111   22349999999999999875432 221                                   1255558


Q ss_pred             hhhcCCcEEEEE
Q 026623          171 RILRPEGAVIFR  182 (235)
Q Consensus       171 RVLRPGG~lii~  182 (235)
                      |.|||||.+++.
T Consensus       213 ~eL~pGG~mvl~  224 (384)
T 2efj_A          213 EELISRGRMLLT  224 (384)
T ss_dssp             HHEEEEEEEEEE
T ss_pred             HHhccCCeEEEE
Confidence            999999999998

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.35  E-value=2.5e-07  Score=85.37  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=74.3

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCC-------------------------------------ceeEEeecCcc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKS-------------------------------------WVMNVVPTTAK  115 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~-------------------------------------~~~~V~~~D~s  115 (235)
                      ++...++.....|||.+||+|+|+..++....                                     ....|+++|.+
T Consensus       187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  266 (385)
T 3ldu_A          187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID  266 (385)
T ss_dssp             HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred             HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence            34445666678999999999998766543210                                     01359999999


Q ss_pred             -ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhhc-cCCCCCChHHHHHHHhhhhcC--CcEEEEEeC
Q 026623          116 -NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVFS-LYENTCKPEDILLEMDRILRP--EGAVIFRDE  184 (235)
Q Consensus       116 -~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~-h~~~~~~~~~~L~Em~RVLRP--GG~lii~d~  184 (235)
                       .++..+.+.    |+   +...+..+..++ .+.+||+|+++-=+. .+.+..++..+..++.++||+  ||.+++-..
T Consensus       267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~-~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          267 EESIDIARENAEIAGVDEYIEFNVGDATQFK-SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEEEEECCGGGCC-CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhcC-cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence             899876654    54   333444444455 357999999965543 121123466788889999998  777776654


Q ss_pred             hH
Q 026623          185 VD  186 (235)
Q Consensus       185 ~~  186 (235)
                      ..
T Consensus       346 ~~  347 (385)
T 3ldu_A          346 YE  347 (385)
T ss_dssp             CT
T ss_pred             CH
Confidence            43

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.34  E-value=4.4e-07  Score=81.22  Aligned_cols=75  Identities=12%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCCCccceeeehh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      ++.....+|||+|||+|.++..|++.+   ..|+++|.+ ++++.+.++    +-+..++.++..+++.+.+||+|+++.
T Consensus        46 l~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~Nl  122 (295)
T 3gru_A           46 ANLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANL  122 (295)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEEC
T ss_pred             cCCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeC
Confidence            344456799999999999999999863   479999999 888877665    234455555555664446899999875


Q ss_pred             hhc
Q 026623          152 VFS  154 (235)
Q Consensus       152 vl~  154 (235)
                      -++
T Consensus       123 Py~  125 (295)
T 3gru_A          123 PYQ  125 (295)
T ss_dssp             CGG
T ss_pred             ccc
Confidence            553

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.34  E-value=2.5e-07  Score=82.58  Aligned_cols=136  Identities=14%  Similarity=0.036  Sum_probs=77.5

Q ss_pred             CCceEeeeccccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHH---cCc-cccccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYE---RGL-IGIYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~---Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      +..+|||+|||+|+|+...+. .+  +..|+++|+. ++......   .|. +......++.+.+.++.||+|.|....+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~g--v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApn  167 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKN--VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGES  167 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTT--EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcC--CCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccC
Confidence            456899999999999997765 34  5678899887 43111100   010 1111211222233358999999988775


Q ss_pred             cCCCC-CC---hHHHHHHHhhhhcCC--cEEEEEeCh----H---HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEE
Q 026623          155 LYENT-CK---PEDILLEMDRILRPE--GAVIFRDEV----D---ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAV  221 (235)
Q Consensus       155 h~~~~-~~---~~~~L~Em~RVLRPG--G~lii~d~~----~---~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~  221 (235)
                       .... -|   ...+|.=+.++||||  |.|++---.    +   ++..++...++...  .++  -+-....|.++||+
T Consensus       168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~--~KP--aSR~~S~E~Y~V~~  242 (282)
T 3gcz_A          168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLV--RVP--LSRNSTHEMYWVSG  242 (282)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEE--CCT--TSCTTCCCEEEETT
T ss_pred             -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEE--EcC--CCcccCcceeEEEe
Confidence             2110 01   113444557899999  999998533    2   33444444443332  233  22222589999986


Q ss_pred             ec
Q 026623          222 KQ  223 (235)
Q Consensus       222 k~  223 (235)
                      .+
T Consensus       243 ~r  244 (282)
T 3gcz_A          243 TR  244 (282)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.31  E-value=1.6e-06  Score=79.02  Aligned_cols=127  Identities=10%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCC-CCCC------------
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGF-STYP------------  141 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l-~~~p------------  141 (235)
                      ..+|||+|||+|.|+..|+...   ..|+++|.+ .++..+.+.    |+  +..++..++.+ +...            
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~  290 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID  290 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred             CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence            3579999999999999998742   479999999 888876543    43  22233222222 1111            


Q ss_pred             ---CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HH-HHHHHHHHhccCceeE---eecCCCCCCC
Q 026623          142 ---RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DA-LNKVRKFAEGMRWDTK---MMDHEDGPLM  213 (235)
Q Consensus       142 ---~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~-~~~i~~~~~~~~W~~~---~~~~~~~~~~  213 (235)
                         .+||+|+++      |.+   ..+..++.+.|+|+|.+++.... .. ...++.+..+  |++.   ..|-=....+
T Consensus       291 ~~~~~fD~Vv~d------PPr---~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~~--y~~~~~~~~D~FP~T~H  359 (369)
T 3bt7_A          291 LKSYQCETIFVD------PPR---SGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQT--HKVERLALFDQFPYTHH  359 (369)
T ss_dssp             GGGCCEEEEEEC------CCT---TCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH--EEEEEEEEECCSTTSSC
T ss_pred             cccCCCCEEEEC------cCc---cccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhhC--cEEEEEEeeccCCCCCc
Confidence               389999862      111   12456778888888888777533 32 3344444433  5543   2333233346


Q ss_pred             CceEEEEEe
Q 026623          214 PEKILIAVK  222 (235)
Q Consensus       214 ~e~~l~~~k  222 (235)
                      -|-+.+-+|
T Consensus       360 vE~v~ll~r  368 (369)
T 3bt7_A          360 MQCGVLLTA  368 (369)
T ss_dssp             CEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            676666554

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.27  E-value=5.1e-07  Score=83.56  Aligned_cols=113  Identities=15%  Similarity=0.158  Sum_probs=71.7

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcC--CC-----------------------------------ceeEEeecCcc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESP--KS-----------------------------------WVMNVVPTTAK  115 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~--~~-----------------------------------~~~~V~~~D~s  115 (235)
                      ++...++.....|||.+||+|+|+...+..  ..                                   -...|+++|.+
T Consensus       193 ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          193 LVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            344456666789999999999986544421  10                                   01359999999


Q ss_pred             -ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhhc-cCCCCCChHHHHHHHhhhhcC--CcEEEEEeC
Q 026623          116 -NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVFS-LYENTCKPEDILLEMDRILRP--EGAVIFRDE  184 (235)
Q Consensus       116 -~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~-h~~~~~~~~~~L~Em~RVLRP--GG~lii~d~  184 (235)
                       .++..+.+.    |+   +...+..+..++ .+.+||+|+++-=+. .+.+..++..+..+|.++||+  ||.+++-..
T Consensus       273 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~-~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          273 ARLIEIAKQNAVEAGLGDLITFRQLQVADFQ-TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSEEEECCGGGCC-CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChHhCC-CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence             899876654    54   233444444555 347999999973331 111112456778888888887  887776654


Q ss_pred             hH
Q 026623          185 VD  186 (235)
Q Consensus       185 ~~  186 (235)
                      ..
T Consensus       352 ~~  353 (393)
T 3k0b_A          352 YE  353 (393)
T ss_dssp             CT
T ss_pred             CH
Confidence            43

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.26  E-value=6.8e-07  Score=80.34  Aligned_cols=135  Identities=17%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH--H-HHcCc-cccccccccCCCCCCCccceeeehhhhcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV--I-YERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~--~-~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      +..+|||+||++|+|+..+.++. -+..|.++|+. ++...  . ...+. +.....-++.+.+.++.||+|.|....+ 
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn-  158 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES-  158 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC-
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC-
Confidence            47899999999999999999752 15678888886 32110  0 00010 1111111222333358999999976654 


Q ss_pred             CCCCCCh-----HHHHHHHhhhhcCC-cEEEEEeCh-------HHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          156 YENTCKP-----EDILLEMDRILRPE-GAVIFRDEV-------DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       156 ~~~~~~~-----~~~L~Em~RVLRPG-G~lii~d~~-------~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      -..+ ..     ..+|.=+.++|||| |.|++---.       +++..++...++...  .++  -+-+...|.++||..
T Consensus       159 sG~~-~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~--~KP--aSR~~S~E~Y~V~~~  233 (300)
T 3eld_A          159 SSNP-LVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIV--RVP--FSRNSTHEMYYISGA  233 (300)
T ss_dssp             CSSH-HHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEE--CCT--TSCTTCCCEEEESSC
T ss_pred             CCCH-HHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEE--EeC--CCCCCChHHeeeccC
Confidence            2110 11     13344447899999 999998533       233444444444332  233  222225899999865

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.23  E-value=3.9e-07  Score=84.01  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=64.4

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc-------------------Cc--cccccccccCC-
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER-------------------GL--IGIYHDWCEGF-  137 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R-------------------gl--~~~~~~~~e~l-  137 (235)
                      ..+|||+|||+|.++..++.. +.  ..|+++|.+ ++++.+.+.                   |+  +..++..+..+ 
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            568999999999999888765 42  359999999 777765542                   43  22233322222 


Q ss_pred             CCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          138 STYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       138 ~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ...++.||+|+++-       .+....+|....|.|||||+++++
T Consensus       126 ~~~~~~fD~I~lDP-------~~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          126 AERHRYFHFIDLDP-------FGSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HHSTTCEEEEEECC-------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-------CCCHHHHHHHHHHhcCCCCEEEEE
Confidence            11246899998631       234578999999999999999887

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.23  E-value=1.3e-06  Score=80.76  Aligned_cols=113  Identities=11%  Similarity=0.102  Sum_probs=73.4

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcC--CC-----------------------------------ceeEEeecCcc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESP--KS-----------------------------------WVMNVVPTTAK  115 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~--~~-----------------------------------~~~~V~~~D~s  115 (235)
                      ++...++.....|||.+||+|+|+...+..  ..                                   ....|+++|.+
T Consensus       186 ll~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid  265 (384)
T 3ldg_A          186 IILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD  265 (384)
T ss_dssp             HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence            344456666789999999999986544421  10                                   01359999999


Q ss_pred             -ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhhc-cCCCCCChHHHHHHHhhhhcC--CcEEEEEeC
Q 026623          116 -NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVFS-LYENTCKPEDILLEMDRILRP--EGAVIFRDE  184 (235)
Q Consensus       116 -~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~-h~~~~~~~~~~L~Em~RVLRP--GG~lii~d~  184 (235)
                       .++..+.+.    |+   +...+..+..++ .+.+||+|+++-=+. .+.+..++..+..+|.++||+  ||.+++-..
T Consensus       266 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~-~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          266 GRMVEIARKNAREVGLEDVVKLKQMRLQDFK-TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHHHHHHHHTTCTTTEEEEECCGGGCC-CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChHHCC-ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence             899876653    54   233444444555 347999999973332 122223567888889999988  888777665


Q ss_pred             hH
Q 026623          185 VD  186 (235)
Q Consensus       185 ~~  186 (235)
                      ..
T Consensus       345 ~~  346 (384)
T 3ldg_A          345 DT  346 (384)
T ss_dssp             CT
T ss_pred             CH
Confidence            43

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.22  E-value=3.8e-06  Score=80.72  Aligned_cols=145  Identities=13%  Similarity=0.092  Sum_probs=85.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC----C-C------------ceeEEeecCcc-ccHHHHHHc----Ccc-------
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP----K-S------------WVMNVVPTTAK-NTLGVIYER----GLI-------  127 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~----~-~------------~~~~V~~~D~s-~~L~~~~~R----gl~-------  127 (235)
                      +......+|||.+||+|+|...+.+.    . .            -..++.++|.+ .++.++...    |+.       
T Consensus       165 l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~  244 (541)
T 2ar0_A          165 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG  244 (541)
T ss_dssp             HCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTB
T ss_pred             hccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccC
Confidence            44445679999999999997666532    1 0            01368999998 777776543    432       


Q ss_pred             ccccccccCCC---CCCCccceeeehhhhccCCCC----------CC-hHHHHHHHhhhhcCCcEEEEEeChHHH-----
Q 026623          128 GIYHDWCEGFS---TYPRTYDLIHANGVFSLYENT----------CK-PEDILLEMDRILRPEGAVIFRDEVDAL-----  188 (235)
Q Consensus       128 ~~~~~~~e~l~---~~p~sFDlV~a~~vl~h~~~~----------~~-~~~~L~Em~RVLRPGG~lii~d~~~~~-----  188 (235)
                      ...+.  ..|.   .....||+|+++--|......          .+ -..++..+.+.|||||.+++.-+..++     
T Consensus       245 ~I~~g--DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~  322 (541)
T 2ar0_A          245 AIRLG--NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK  322 (541)
T ss_dssp             SEEES--CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTH
T ss_pred             CeEeC--CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcH
Confidence            12222  2232   123789999998666533210          11 237899999999999998887654432     


Q ss_pred             -HHHHHHHhccCceeEeecCCCCC----CCCceEEEEEec
Q 026623          189 -NKVRKFAEGMRWDTKMMDHEDGP----LMPEKILIAVKQ  223 (235)
Q Consensus       189 -~~i~~~~~~~~W~~~~~~~~~~~----~~~e~~l~~~k~  223 (235)
                       ..|++.+..-++-..+...+.+.    ...--||+.+|.
T Consensus       323 ~~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~  362 (541)
T 2ar0_A          323 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG  362 (541)
T ss_dssp             HHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred             HHHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECC
Confidence             34544433323322222222222    245667888774

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.18  E-value=2.7e-06  Score=76.36  Aligned_cols=104  Identities=12%  Similarity=0.069  Sum_probs=65.2

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC--CCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCC---Ccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYP---RTY  144 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p---~sF  144 (235)
                      +...+..+|||+|||+|+.+..|+..  +  ...|+++|.+ .++..+.++    |+  +..++.....++...   ++|
T Consensus        98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~--~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~f  175 (309)
T 2b9e_A           98 LDPPPGSHVIDACAAPGNKTSHLAALLKN--QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV  175 (309)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             hCCCCCCEEEEeCCChhHHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCC
Confidence            34445679999999999999888763  2  2369999999 888876554    54  233344344444322   589


Q ss_pred             ceeeeh------hhhccCCC--------CCChH-------HHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHAN------GVFSLYEN--------TCKPE-------DILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~------~vl~h~~~--------~~~~~-------~~L~Em~RVLRPGG~lii~d  183 (235)
                      |.|+++      .++.+-++        ..++.       ++|....+.|+ ||.++.+.
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            999963      23332111        12322       46777888887 99999875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.14  E-value=2.1e-06  Score=75.88  Aligned_cols=73  Identities=16%  Similarity=0.086  Sum_probs=53.4

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---ccccccccccCCCCCC-Cccceeeehh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---LIGIYHDWCEGFSTYP-RTYDLIHANG  151 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---l~~~~~~~~e~l~~~p-~sFDlV~a~~  151 (235)
                      ++.... +|||+|||+|.++..|++.+   ..|+++|.+ ++++.+.++-   -+..++.+...+++.+ ..||.|++|.
T Consensus        43 ~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~Nl  118 (271)
T 3fut_A           43 ARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANL  118 (271)
T ss_dssp             HCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEE
T ss_pred             cCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecC
Confidence            344446 99999999999999999875   369999999 9999887762   2344555555565433 3789988865


Q ss_pred             hh
Q 026623          152 VF  153 (235)
Q Consensus       152 vl  153 (235)
                      -+
T Consensus       119 Py  120 (271)
T 3fut_A          119 PY  120 (271)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.12  E-value=2e-06  Score=79.82  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccccC-CC-CCCCccceeeeh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWCEG-FS-TYPRTYDLIHAN  150 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~e~-l~-~~p~sFDlV~a~  150 (235)
                      ..+|||++||+|.|+..++.+..-+..|+++|.+ ..++.+.+.    |+.    ..++..+.. +. ...+.||+|+++
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            5799999999999998887631114579999998 777765442    442    222222221 22 235789999985


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      - +      +....++....+.|+|||+++++-
T Consensus       133 P-~------g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          133 P-F------GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             C-S------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-C------cCHHHHHHHHHHHhCCCCEEEEEe
Confidence            4 1      234678999999999999998873

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.11  E-value=3.6e-05  Score=71.15  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      ++.+|||+||.+||++..|.+++   +.|+++|...|-....+-+.+..+......+.+..+.||+|+|..+.       
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-------  280 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE-------  280 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-------
T ss_pred             CCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC-------
Confidence            36799999999999999999986   46999998766555555444433332222222223689999997765       


Q ss_pred             ChHHHHHHHhhhhcCC
Q 026623          161 KPEDILLEMDRILRPE  176 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPG  176 (235)
                      ++..++.-|.+.|..|
T Consensus       281 ~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          281 KPAKVAALMAQWLVNG  296 (375)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             ChHHhHHHHHHHHhcc
Confidence            4567777787877776

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.11  E-value=2.4e-06  Score=74.64  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=50.5

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCC----CCccce
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTY----PRTYDL  146 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~----p~sFDl  146 (235)
                      .++.....+|||+|||+|.++..|++.+   ..|+++|.+ ++++.+.++    +-+..++.++..+++.    +..|| 
T Consensus        24 ~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-   99 (255)
T 3tqs_A           24 AIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-   99 (255)
T ss_dssp             HHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-
T ss_pred             hcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-
Confidence            3444456799999999999999999875   479999999 899887765    2234455555555531    25688 


Q ss_pred             eeeh
Q 026623          147 IHAN  150 (235)
Q Consensus       147 V~a~  150 (235)
                      |++|
T Consensus       100 vv~N  103 (255)
T 3tqs_A          100 VVGN  103 (255)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5554

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.07  E-value=1.4e-05  Score=69.36  Aligned_cols=60  Identities=10%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccccccccCCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIYHDWCEGFS  138 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~~~~~e~l~  138 (235)
                      ++.....+|||+|||+|.++..|++.+  ...|+++|.+ .+++.+.+++  -+..++.++..++
T Consensus        27 ~~~~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~   89 (249)
T 3ftd_A           27 LNIEEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDASKFP   89 (249)
T ss_dssp             TTCCTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             cCCCCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCC
Confidence            444456799999999999999999875  3579999999 8999887762  1234455555555

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.98  E-value=7.8e-05  Score=71.75  Aligned_cols=141  Identities=18%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             ceEeeeccccchHHHHHhcC-----C---------CceeEEeecCcc-ccHHHHHH----cCcccc---ccccccCCCCC
Q 026623           83 RNVMDMNAGLGGFAAALESP-----K---------SWVMNVVPTTAK-NTLGVIYE----RGLIGI---YHDWCEGFSTY  140 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~-----~---------~~~~~V~~~D~s-~~L~~~~~----Rgl~~~---~~~~~e~l~~~  140 (235)
                      .+|||.+||+|+|.....+.     +         ....++.|+|+. .++.++..    +|+...   .+...-..+.+
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            38999999999997665321     0         002579999998 77776554    343221   22221112323


Q ss_pred             -CCccceeeehhhhcc-------------------------CCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHH------
Q 026623          141 -PRTYDLIHANGVFSL-------------------------YENTCKP-EDILLEMDRILRPEGAVIFRDEVDA------  187 (235)
Q Consensus       141 -p~sFDlV~a~~vl~h-------------------------~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~------  187 (235)
                       +..||+|++|==|..                         ++...+. -.++..+.+.|||||.+++--+..+      
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~  405 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTN  405 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGG
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcc
Confidence             379999999644432                         1111111 2689999999999999777643322      


Q ss_pred             -HHHHHHHHhccCceeEeecCCCC----CCCCceEEEEEec
Q 026623          188 -LNKVRKFAEGMRWDTKMMDHEDG----PLMPEKILIAVKQ  223 (235)
Q Consensus       188 -~~~i~~~~~~~~W~~~~~~~~~~----~~~~e~~l~~~k~  223 (235)
                       -..+++.+-.-++-..+...+.+    ..-.--||+.+|.
T Consensus       406 ~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~  446 (544)
T 3khk_A          406 NEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKD  446 (544)
T ss_dssp             GHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESC
T ss_pred             hHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecC
Confidence             34566654444443333333322    2234567777764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.90  E-value=2.3e-06  Score=79.95  Aligned_cols=99  Identities=16%  Similarity=0.049  Sum_probs=61.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc--cccccccccC-CCCC-CCccceeeeh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL--IGIYHDWCEG-FSTY-PRTYDLIHAN  150 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl--~~~~~~~~e~-l~~~-p~sFDlV~a~  150 (235)
                      ..+|||+|||+|.++.+|+..+   ..|+++|.+ .++..+.+.      |+  +..++..+.. ++.. +++||+|+++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            5799999999999999998875   479999999 888876654      54  3334433333 2322 2689999985


Q ss_pred             hhhcc-----CCCCCChHHHHHHHhhhhcC-CcEEEEEe
Q 026623          151 GVFSL-----YENTCKPEDILLEMDRILRP-EGAVIFRD  183 (235)
Q Consensus       151 ~vl~h-----~~~~~~~~~~L~Em~RVLRP-GG~lii~d  183 (235)
                      =-...     +-.-.+...-+.++.+.|+. +..+++--
T Consensus       171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~  209 (410)
T 3ll7_A          171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKL  209 (410)
T ss_dssp             CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEE
T ss_pred             CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEc
Confidence            22110     00111223456677776654 44555543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.89  E-value=8.8e-06  Score=70.88  Aligned_cols=73  Identities=10%  Similarity=0.101  Sum_probs=47.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCC-----Cccce
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYP-----RTYDL  146 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p-----~sFDl  146 (235)
                      ++.....+|||+|||+|.++. |...+  ...|+++|.+ +++..+.++-    -+..++.+...+++.+     +..|.
T Consensus        17 ~~~~~~~~VLEIG~G~G~lt~-l~~~~--~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~   93 (252)
T 1qyr_A           17 INPQKGQAMVEIGPGLAALTE-PVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLR   93 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHH-HHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEE
T ss_pred             cCCCCcCEEEEECCCCcHHHH-hhhCC--CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceE
Confidence            344456789999999999999 75421  1139999999 8999887763    2334455445555211     23467


Q ss_pred             eeehhh
Q 026623          147 IHANGV  152 (235)
Q Consensus       147 V~a~~v  152 (235)
                      |++|.-
T Consensus        94 vvsNlP   99 (252)
T 1qyr_A           94 VFGNLP   99 (252)
T ss_dssp             EEEECC
T ss_pred             EEECCC
Confidence            776543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.88  E-value=3.4e-06  Score=75.55  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-----ccccccccccCCCCC----C-Ccc
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-----LIGIYHDWCEGFSTY----P-RTY  144 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-----l~~~~~~~~e~l~~~----p-~sF  144 (235)
                      .+...+..+|||+|||+|+++.+|++... ...|+++|.+ .++..+.++-     -+..++...+.++.+    . ++|
T Consensus        21 ~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~   99 (301)
T 1m6y_A           21 FLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV   99 (301)
T ss_dssp             HHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             hcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCC
Confidence            34444567999999999999999987521 2479999999 9999887752     123344444444311    1 589


Q ss_pred             ceeeehh
Q 026623          145 DLIHANG  151 (235)
Q Consensus       145 DlV~a~~  151 (235)
                      |.|+++.
T Consensus       100 D~Vl~D~  106 (301)
T 1m6y_A          100 DGILMDL  106 (301)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEcC
Confidence            9998754

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.87  E-value=2.6e-05  Score=76.66  Aligned_cols=124  Identities=13%  Similarity=0.129  Sum_probs=74.0

Q ss_pred             ccccccccchHHHHHHHHHHHHHhh-hh--------CCCCCceEeeeccccchH---HHHHhcCCCceeEEeecCccccH
Q 026623           51 VTGKSYQEDSKLWKKHVNAYKKMNS-LI--------GTRRYRNVMDMNAGLGGF---AAALESPKSWVMNVVPTTAKNTL  118 (235)
Q Consensus        51 ~~~~~f~~d~~~W~~~v~~y~~~l~-~l--------~~~~~r~VLD~GCG~G~f---aa~L~~~~~~~~~V~~~D~s~~L  118 (235)
                      .+.|.|+.|.-.    ...|.+-+. .|        .......|||+|||+|-+   +..-.++..-...|.+++.+.+.
T Consensus       322 ~tYevFEkD~vK----y~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A  397 (637)
T 4gqb_A          322 QTYEVFEKDPIK----YSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA  397 (637)
T ss_dssp             HHHHHHTTCHHH----HHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH
T ss_pred             hhhhhhcCChhh----HHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH
Confidence            356779888653    333444221 11        122345799999999976   22222222223467888887444


Q ss_pred             HH----HHHcCc---cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623          119 GV----IYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVI  180 (235)
Q Consensus       119 ~~----~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~li  180 (235)
                      ..    ..+.|+   +..++...|.+. .|+..|+|++-.+=+.+ ..+.+..+|.-.+|.|||||.++
T Consensus       398 ~~a~~~v~~N~~~dkVtVI~gd~eev~-LPEKVDIIVSEwMG~fL-l~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          398 VVTLENWQFEEWGSQVTVVSSDMREWV-APEKADIIVSELLGSFA-DNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHHHTTGGGEEEEESCTTTCC-CSSCEEEEECCCCBTTB-GGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHhccCCCeEEEEeCcceecc-CCcccCEEEEEcCcccc-cccCCHHHHHHHHHhcCCCcEEc
Confidence            33    333344   556677777765 56899999983221111 11245578888899999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.86  E-value=6.7e-06  Score=72.78  Aligned_cols=62  Identities=15%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCc-eeEEeecCcc-ccHHHHHHc--CccccccccccCCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSW-VMNVVPTTAK-NTLGVIYER--GLIGIYHDWCEGFS  138 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~-~~~V~~~D~s-~~L~~~~~R--gl~~~~~~~~e~l~  138 (235)
                      ++.....+|||+|||+|.++..|++...- ...|+++|.+ ++++.+.++  .-+..++.++..++
T Consensus        38 ~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           38 IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFD  103 (279)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCC
T ss_pred             cCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCC
Confidence            44445679999999999999999875321 0239999999 999988776  22334555555565

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.84  E-value=7e-05  Score=75.51  Aligned_cols=142  Identities=11%  Similarity=0.040  Sum_probs=82.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCC--ceeEEeecCcc-ccHHHHHHc----------Ccc--ccccccccCCCCC-CCcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKS--WVMNVVPTTAK-NTLGVIYER----------GLI--GIYHDWCEGFSTY-PRTY  144 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~--~~~~V~~~D~s-~~L~~~~~R----------gl~--~~~~~~~e~l~~~-p~sF  144 (235)
                      ...+|||.|||+|+|+.+++.+-.  -..++.++|+. .++..+..|          |+.  ....+........ ...|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            356899999999999988876421  11358899998 777776222          111  1111111111122 3789


Q ss_pred             ceeeehhhhccC-------------------------CCCCC-hHHHHHHHhhhhcCCcEEEEEeChHHH-------HHH
Q 026623          145 DLIHANGVFSLY-------------------------ENTCK-PEDILLEMDRILRPEGAVIFRDEVDAL-------NKV  191 (235)
Q Consensus       145 DlV~a~~vl~h~-------------------------~~~~~-~~~~L~Em~RVLRPGG~lii~d~~~~~-------~~i  191 (235)
                      |+|++|==+...                         ....+ ...++..+.+.|||||.+++--+...+       ..+
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkL  480 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAF  480 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHH
Confidence            999995433110                         00112 345788899999999999888655544       346


Q ss_pred             HHH-HhccCceeEeecCCC-CCC----CCceEEEEEec
Q 026623          192 RKF-AEGMRWDTKMMDHED-GPL----MPEKILIAVKQ  223 (235)
Q Consensus       192 ~~~-~~~~~W~~~~~~~~~-~~~----~~e~~l~~~k~  223 (235)
                      ++. ++...-. .+.+.+. .-+    ..-.||+.+|.
T Consensus       481 Rk~LLe~~~I~-aIIdLP~~~~F~~asv~T~ILIlrK~  517 (878)
T 3s1s_A          481 REFLVGNFGLE-HIFLYPREGLFEEVIKDTVVFVGRKG  517 (878)
T ss_dssp             HHHHTTTTCEE-EEEECCBCCSSCSCBCCEEEEEEETT
T ss_pred             HHHHHhCCCeE-EEEECCCccccCCCCCcEEEEEEEcC
Confidence            665 4444443 3333332 111    34557777775

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.78  E-value=1.1e-05  Score=70.86  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=55.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH-------HHHc----C-c---cccccccccC-CCCCCCccc
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV-------IYER----G-L---IGIYHDWCEG-FSTYPRTYD  145 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~-------~~~R----g-l---~~~~~~~~e~-l~~~p~sFD  145 (235)
                      .+|||++||+|.++..|+..+.   .|+++|.+ .+..+       +.+.    | +   +..++...+. ++..+++||
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD  166 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence            7999999999999999987753   59999998 44222       2111    1 1   2233333333 454556799


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCc
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEG  177 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG  177 (235)
                      +|+++-.|.+- .  . ..++.+.-|+||+.+
T Consensus       167 vV~lDP~y~~~-~--~-saavkk~~~~lr~l~  194 (258)
T 2oyr_A          167 VVYLDPMFPHK-Q--K-SALVKKEMRVFQSLV  194 (258)
T ss_dssp             EEEECCCCCCC-C--C------HHHHHHHHHS
T ss_pred             EEEEcCCCCCc-c--c-chHHHHHHHHHHHhh
Confidence            99998888552 2  1 267777888998866

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.78  E-value=6.1e-06  Score=72.06  Aligned_cols=73  Identities=15%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccc--------cHHHHHHc----Cc---cccccccccC-CCCCC---
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKN--------TLGVIYER----GL---IGIYHDWCEG-FSTYP---  141 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~--------~L~~~~~R----gl---~~~~~~~~e~-l~~~p---  141 (235)
                      ...+|||+|||+|.++..|+..+   ..|+++|.+.        ++..+.+.    |+   +..++...+. ++.++   
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~  159 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ  159 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence            45689999999999999998875   3589999975        23333221    22   2233333333 23233   


Q ss_pred             CccceeeehhhhccC
Q 026623          142 RTYDLIHANGVFSLY  156 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~  156 (235)
                      ++||+|+++-.|.|.
T Consensus       160 ~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          160 GKPDIVYLDPMYPER  174 (258)
T ss_dssp             CCCSEEEECCCC---
T ss_pred             CCccEEEECCCCCCc
Confidence            799999998888653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.72  E-value=3.4e-05  Score=76.33  Aligned_cols=114  Identities=8%  Similarity=0.030  Sum_probs=67.6

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcC-----C-C---------c--------------------------eeEEee
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESP-----K-S---------W--------------------------VMNVVP  111 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-----~-~---------~--------------------------~~~V~~  111 (235)
                      ++...++.....|||.+||+|+|+...+..     + .         |                          ...+++
T Consensus       182 ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G  261 (703)
T 3v97_A          182 IVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYG  261 (703)
T ss_dssp             HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred             HHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEE
Confidence            344455666789999999999986443321     0 0         0                          136999


Q ss_pred             cCcc-ccHHHHHHc----Ccc---ccccccccCCCC-CC-Cccceeeehhhhc-cCCCCCChHHHHH---HHhhhhcCCc
Q 026623          112 TTAK-NTLGVIYER----GLI---GIYHDWCEGFST-YP-RTYDLIHANGVFS-LYENTCKPEDILL---EMDRILRPEG  177 (235)
Q Consensus       112 ~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~-~p-~sFDlV~a~~vl~-h~~~~~~~~~~L~---Em~RVLRPGG  177 (235)
                      +|.+ .++..+.+.    |+.   ...+..+..+.. .+ ++||+|++|==+. .+.+..++..+..   |+.|.+.|||
T Consensus       262 ~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~  341 (703)
T 3v97_A          262 SDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGW  341 (703)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCC
Confidence            9999 888876553    553   333444444431 22 4899999973221 1112223444444   4445556899


Q ss_pred             EEEEEeChH
Q 026623          178 AVIFRDEVD  186 (235)
Q Consensus       178 ~lii~d~~~  186 (235)
                      .+++-....
T Consensus       342 ~~~ilt~~~  350 (703)
T 3v97_A          342 NLSLFSASP  350 (703)
T ss_dssp             EEEEEESCH
T ss_pred             eEEEEeCCH
Confidence            998887654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.71  E-value=0.00032  Score=67.51  Aligned_cols=143  Identities=15%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             CCceEeeeccccchHHHHHhcC--CCceeEEeecCcc-ccHHHHHH----cCcc----ccccccccCC--CCC-CCccce
Q 026623           81 RYRNVMDMNAGLGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYE----RGLI----GIYHDWCEGF--STY-PRTYDL  146 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~----Rgl~----~~~~~~~e~l--~~~-p~sFDl  146 (235)
                      ...+|||.+||+|+|...+.+.  ..-..++.|+|.. .++.++..    +|+.    ...+...-..  |.. +..||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            4679999999999997776543  0013579999998 77776543    3541    1223222112  323 388999


Q ss_pred             eeehhhhcc-------------------CCCCCCh-HHHHHHHhhhhc-CCcEEEEEeChHHH------HHHHHHHhccC
Q 026623          147 IHANGVFSL-------------------YENTCKP-EDILLEMDRILR-PEGAVIFRDEVDAL------NKVRKFAEGMR  199 (235)
Q Consensus       147 V~a~~vl~h-------------------~~~~~~~-~~~L~Em~RVLR-PGG~lii~d~~~~~------~~i~~~~~~~~  199 (235)
                      |++|==|..                   ++...+. -.++..+.+.|| |||.+.+--+..++      ..+++.+-.-+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~  380 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEG  380 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTT
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCC
Confidence            998622210                   1111111 248999999999 99998776544432      34666644434


Q ss_pred             ceeEeecCCCC----CCCCceEEEEEec
Q 026623          200 WDTKMMDHEDG----PLMPEKILIAVKQ  223 (235)
Q Consensus       200 W~~~~~~~~~~----~~~~e~~l~~~k~  223 (235)
                      +-..+...+.+    ..-+--||+.+|.
T Consensus       381 ~l~~II~LP~~lF~~t~i~t~Ilvl~K~  408 (542)
T 3lkd_A          381 AIDTVIGLPANIFFNTSIPTTVIILKKN  408 (542)
T ss_dssp             CEEEEEECCSSCSSSCCCCEEEEEECSS
T ss_pred             ceeEEEEccccccCCCCCcEEEEEEecC
Confidence            43333333322    2234556777664

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.58  E-value=9.9e-05  Score=65.27  Aligned_cols=130  Identities=12%  Similarity=0.059  Sum_probs=67.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeE----EeecCccccHHHHHH-cCc--cccc--cccccCCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMN----VVPTTAKNTLGVIYE-RGL--IGIY--HDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~----V~~~D~s~~L~~~~~-Rgl--~~~~--~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+|+|+||+.|+.+.+.+++.. +..    ++++|.+ .+++... .|.  +...  .|..+ +  .+..+|+|.|..
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~-vg~V~G~vig~D~~-~~P~~~~~~Gv~~i~~~~G~Df~~-~--~~~~~DvVLSDM  147 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKN-VQEVRGYTKGGPGH-EEPMLMQSYGWNIVTMKSGVDVFY-K--PSEISDTLLCDI  147 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTT-EEEEEEECCCSTTS-CCCCCCCSTTGGGEEEECSCCGGG-S--CCCCCSEEEECC
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcC-CCCceeEEEccccc-cCCCcccCCCceEEEeeccCCccC-C--CCCCCCEEEeCC
Confidence            367999999999999988887521 223    4455521 1111000 121  1111  01112 2  246899999865


Q ss_pred             hhccCCCCCCh-----HHHHHHHhhhhcCCc-EEEEEeC----hHHHH---HHHHHHhccCceeEeecCCCCCCCCceEE
Q 026623          152 VFSLYENTCKP-----EDILLEMDRILRPEG-AVIFRDE----VDALN---KVRKFAEGMRWDTKMMDHEDGPLMPEKIL  218 (235)
Q Consensus       152 vl~h~~~~~~~-----~~~L~Em~RVLRPGG-~lii~d~----~~~~~---~i~~~~~~~~W~~~~~~~~~~~~~~e~~l  218 (235)
                      .=. -.++ ..     ..+|.=+.++|+||| .|++---    .++.+   .++....+..  ++.+-+-+.  ..|.++
T Consensus       148 APn-SG~~-~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk--vk~paSR~~--S~E~Yl  221 (269)
T 2px2_A          148 GES-SPSA-EIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL--VRVPLSRNS--NHEMYW  221 (269)
T ss_dssp             CCC-CSCH-HHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE--ECCTTSCTT--CCCEEE
T ss_pred             CCC-CCcc-HHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE--EECCCCCCC--CccEEE
Confidence            442 1110 11     123433448999999 8888632    33433   4444444433  222222222  578998


Q ss_pred             EEE
Q 026623          219 IAV  221 (235)
Q Consensus       219 ~~~  221 (235)
                      ++.
T Consensus       222 Va~  224 (269)
T 2px2_A          222 VSG  224 (269)
T ss_dssp             ETT
T ss_pred             Eec
Confidence            874

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.47  E-value=0.00015  Score=66.50  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---c-Cc--------cccccccccCCC-CCCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---R-GL--------IGIYHDWCEGFS-TYPR  142 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---R-gl--------~~~~~~~~e~l~-~~p~  142 (235)
                      |+..++.+||||+||.||=+.+|++... ...|++.|.+ ..+..+.+   | |.        +.........++ ..++
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~  222 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD  222 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence            5666788999999999998888877542 3469999998 65554333   2 22        111111122222 2348


Q ss_pred             ccceeee----hh----hhccCCC---CCC------h----HHHHHHHhhhhcCCcEEEEEe
Q 026623          143 TYDLIHA----NG----VFSLYEN---TCK------P----EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       143 sFDlV~a----~~----vl~h~~~---~~~------~----~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .||.|.+    +.    ++..-++   +..      +    ..+|....+.|||||.++-++
T Consensus       223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            9999995    33    2211110   000      0    267788889999999999984

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.44  E-value=5.3e-05  Score=75.28  Aligned_cols=124  Identities=12%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             cccccccchHHHHHHHHHHHHHh-hhh----CC-CCCceEeeeccccchHHH----HH--hc------CCCceeEEeecC
Q 026623           52 TGKSYQEDSKLWKKHVNAYKKMN-SLI----GT-RRYRNVMDMNAGLGGFAA----AL--ES------PKSWVMNVVPTT  113 (235)
Q Consensus        52 ~~~~f~~d~~~W~~~v~~y~~~l-~~l----~~-~~~r~VLD~GCG~G~faa----~L--~~------~~~~~~~V~~~D  113 (235)
                      +.+.|+.|.-.    ...|.+.+ ..+    .. .....|||+|||+|-+..    +.  +.      ...-...|.+++
T Consensus       378 tYe~fekD~vR----y~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVE  453 (745)
T 3ua3_A          378 VYNTFEQDQIK----YDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVE  453 (745)
T ss_dssp             HHHHHHHCHHH----HHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEE
T ss_pred             HHHHHcCChhh----HHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEe
Confidence            45678877653    33344422 111    11 224579999999998742    11  11      000124688998


Q ss_pred             ccc-cH---HHHHHcCc---cccccccccCCCCC-----CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623          114 AKN-TL---GVIYERGL---IGIYHDWCEGFSTY-----PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVI  180 (235)
Q Consensus       114 ~s~-~L---~~~~~Rgl---~~~~~~~~e~l~~~-----p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~li  180 (235)
                      .+. ..   +.....|+   +..++...|.+...     +...|+|++-.+=+.+ +.+-....|.-++|.|||||.+|
T Consensus       454 knp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl-~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          454 KNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFG-DNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTB-GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             CChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEecccccc-chhccHHHHHHHHHhCCCCcEEE
Confidence            873 22   22222343   55667667766532     6899999984442221 22344578888899999999865

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.42  E-value=0.0026  Score=56.85  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc-----cccccccc-cCCCCCCCccc
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL-----IGIYHDWC-EGFSTYPRTYD  145 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl-----~~~~~~~~-e~l~~~p~sFD  145 (235)
                      ....++||=+|-|.|+.+.++.+.+. +..|+-+++. ..++++.+-      |.     +..+.+++ +-+...+++||
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            34578999999999999999988642 3467777776 555554332      11     11122221 22222348999


Q ss_pred             eeeehhhhccCCCC-CChHHHHHHHhhhhcCCcEEEEE
Q 026623          146 LIHANGVFSLYENT-CKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       146 lV~a~~vl~h~~~~-~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+....=..-+.. ---..++..+.|+|+|||.++..
T Consensus       160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            99974321110000 00148999999999999999997

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.30  E-value=0.00027  Score=63.84  Aligned_cols=133  Identities=14%  Similarity=0.098  Sum_probs=73.8

Q ss_pred             CCCceEeeecc------ccchHHHH-HhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNA------GLGGFAAA-LESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GC------G~G~faa~-L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      ....+|||+||      -.|++... +...+   .-|+++|+.++...   ..  ..+..+|..+.. .+.||+|++...
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g---~~VVavDL~~~~sd---a~--~~IqGD~~~~~~-~~k~DLVISDMA  178 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTG---TLLVDSDLNDFVSD---AD--STLIGDCATVHT-ANKWDLIISDMY  178 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTT---CEEEEEESSCCBCS---SS--EEEESCGGGEEE-SSCEEEEEECCC
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCC---cEEEEeeCcccccC---CC--eEEEcccccccc-CCCCCEEEecCC
Confidence            45789999996      88885333 22222   24788888644321   11  224444554332 388999998544


Q ss_pred             hc---cCC-C---CCChHHHHHHH-hhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          153 FS---LYE-N---TCKPEDILLEM-DRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       153 l~---h~~-~---~~~~~~~L~Em-~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      =.   +.. +   -..+.....|+ .++|+|||.|++--.... -+.+.++.+.+.+..... ...-....|.+|+++.
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~VK~fK-~ASRa~SsEvYLVG~g  256 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFV-TNVNASSSEAFLIGAN  256 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEE-EGGGTTSSCEEEEEEE
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCeEEEEC-CCCCCCCeeEEEEeee
Confidence            32   110 0   11244555555 558999999999842211 123444555554433332 2222336899999965

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.28  E-value=0.00039  Score=60.68  Aligned_cols=73  Identities=18%  Similarity=0.225  Sum_probs=43.9

Q ss_pred             ccceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEE
Q 026623          143 TYDLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~  220 (235)
                      .||+|+.. .|+--.+. +  -..+|.+|.|+|||||.|+.-.....   +.+-+..-.+.+...   .|...+-.++.+
T Consensus       173 ~~D~iflD-~fsp~~~p-~lw~~~~l~~l~~~L~pGG~l~tysaa~~---vrr~L~~aGF~v~~~---~g~~~kr~m~~a  244 (257)
T 2qy6_A          173 KVDAWFLD-GFAPAKNP-DMWTQNLFNAMARLARPGGTLATFTSAGF---VRRGLQEAGFTMQKR---KGFGRKREMLCG  244 (257)
T ss_dssp             CEEEEEEC-SSCTTTCG-GGCCHHHHHHHHHHEEEEEEEEESCCBHH---HHHHHHHHTEEEEEE---CCSTTCCCEEEE
T ss_pred             eEEEEEEC-CCCcccCh-hhcCHHHHHHHHHHcCCCcEEEEEeCCHH---HHHHHHHCCCEEEeC---CCCCCCCceEEE
Confidence            79999974 34311110 1  15899999999999999986433332   333344445555432   223345678888


Q ss_pred             Eec
Q 026623          221 VKQ  223 (235)
Q Consensus       221 ~k~  223 (235)
                      .|.
T Consensus       245 ~~~  247 (257)
T 2qy6_A          245 VME  247 (257)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            775

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.25  E-value=0.00058  Score=57.90  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=54.7

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCc-----cccccccccC---------------
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGL-----IGIYHDWCEG---------------  136 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl-----~~~~~~~~e~---------------  136 (235)
                      .++||++|||+.  +..|+...  ...|+.+|.. +..+.+.    +.|+     +..++..+..               
T Consensus        31 a~~VLEiGtGyS--Tl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           31 AEVILEYGSGGS--TVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             CSEEEEESCSHH--HHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCEEEEECchHH--HHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            579999999753  33444432  2468888887 5555433    2354     3333333211               


Q ss_pred             CCC-------CC--CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          137 FST-------YP--RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       137 l~~-------~p--~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++-       .+  ++||+|+...-        .....+.+..+.|||||.+++-+
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~--------k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGR--------FRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSS--------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCC--------CchhHHHHHHHhcCCCeEEEEeC
Confidence            221       22  78999998442        22466777789999999996654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.06  E-value=0.0025  Score=51.91  Aligned_cols=101  Identities=20%  Similarity=0.243  Sum_probs=61.9

Q ss_pred             cccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc-hHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccc
Q 026623           56 YQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG-GFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHD  132 (235)
Q Consensus        56 f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G-~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~  132 (235)
                      -+..+++|...+. |..  +...  ...+|||+|||.| ..|..|++ .+   .+|+++|++ ..+.         .+.|
T Consensus        15 ~~~~~~m~e~Lae-YI~--~~~~--~~~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~---------~v~d   77 (153)
T 2k4m_A           15 VPRGSHMWNDLAV-YII--RCSG--PGTRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG---------IVRD   77 (153)
T ss_dssp             CCCCCHHHHHHHH-HHH--HHSC--SSSEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT---------EECC
T ss_pred             ccchhhHHHHHHH-HHH--hcCC--CCCcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc---------eEEc
Confidence            3445566655444 332  1122  2359999999999 69999986 65   479999998 5554         1211


Q ss_pred             cccCCC-CCC--CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          133 WCEGFS-TYP--RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       133 ~~e~l~-~~p--~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                        .-|. ...  +.||+|.+      ++...++...+.++.+-.  |.-++|..
T Consensus        78 --DiF~P~~~~Y~~~DLIYs------irPP~El~~~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           78 --DITSPRMEIYRGAALIYS------IRPPAEIHSSLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             --CSSSCCHHHHTTEEEEEE------ESCCTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred             --cCCCCcccccCCcCEEEE------cCCCHHHHHHHHHHHHHc--CCCEEEEc
Confidence              1122 111  48999976      233456777777777644  45666663

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.90  E-value=0.0058  Score=55.08  Aligned_cols=109  Identities=14%  Similarity=0.116  Sum_probs=61.2

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH-----HHHHcCccccccc-cccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG-----VIYERGLIGIYHD-WCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~-----~~~~Rgl~~~~~~-~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...+|||+||++|+|..+.+.... +..|.++|.- ..-.     .-+.-.++..... ....++  +..+|+|+|.-. 
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~--~~~~D~ivcDig-  169 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRP--SECCDTLLCDIG-  169 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSC--CCCCSEEEECCC-
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCC--CCCCCEEEEECc-
Confidence            345999999999999996665432 5689999996 3000     0000011111100 011233  367999999777 


Q ss_pred             ccCCCCCChH-----HHHHHHhhhhcCC-cEEEEEeCh----HHHHHHHHH
Q 026623          154 SLYENTCKPE-----DILLEMDRILRPE-GAVIFRDEV----DALNKVRKF  194 (235)
Q Consensus       154 ~h~~~~~~~~-----~~L~Em~RVLRPG-G~lii~d~~----~~~~~i~~~  194 (235)
                      +--++. .++     .+|.=+.+.|++| |-|+|---.    ++++.++.+
T Consensus       170 eSs~~~-~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~l  219 (321)
T 3lkz_A          170 ESSSSA-EVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELL  219 (321)
T ss_dssp             CCCSCH-HHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHH
T ss_pred             cCCCCh-hhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHH
Confidence            322210 111     2444446888999 999987533    344454444

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.66  E-value=0.0012  Score=61.25  Aligned_cols=115  Identities=13%  Similarity=0.137  Sum_probs=68.6

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc---------------ccccccc----CCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG---------------IYHDWCE----GFST  139 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~---------------~~~~~~e----~l~~  139 (235)
                      .+.++||=+|-|.|+.++++.+.+.  ..|+.+++. ..++++.+- +..               .+.+++-    ....
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~y-fp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKY-MRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHH-CCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhh-chhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            3468999999999999999998764  467777777 666665442 110               1111110    0010


Q ss_pred             CCCccceeeehhhhccCCCCCC---------hHHHHHHHhhhhcCCcEEEEEeC----hHHHHHHHHHHhccC
Q 026623          140 YPRTYDLIHANGVFSLYENTCK---------PEDILLEMDRILRPEGAVIFRDE----VDALNKVRKFAEGMR  199 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~---------~~~~L~Em~RVLRPGG~lii~d~----~~~~~~i~~~~~~~~  199 (235)
                      -.+.||+|+... +.... ..+         -..++..+.|+|+|||.++..-.    .+....+.+.++++-
T Consensus       281 ~~~~yDvIIvDl-~D~~~-s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF  351 (381)
T 3c6k_A          281 EGREFDYVINDL-TAVPI-STSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY  351 (381)
T ss_dssp             HTCCEEEEEEEC-CSSCC-CCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSS
T ss_pred             ccCceeEEEECC-CCCcc-cCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhC
Confidence            126799999742 21100 001         13678889999999999998632    233444555555553

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.57  E-value=0.00098  Score=74.13  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             CCceEeeeccccchHHHHHhc----CCCceeEEeecCcc-ccHHHHHHc--Cc-ccc-ccccccCCCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALES----PKSWVMNVVPTTAK-NTLGVIYER--GL-IGI-YHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~----~~~~~~~V~~~D~s-~~L~~~~~R--gl-~~~-~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +..+||.+|+|+|+.+..+.+    .+....+.+-.|.| .....+.++  .+ +.. ..+..+.-++.+.+||+|+++.
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            356899999999986554332    22223456667777 444333333  11 000 0010011133457899999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ++|-.+   ++...|..++++|||||++++.+.
T Consensus      1320 vl~~t~---~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1320 ALATLG---DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             C-----------------------CCEEEEEEC
T ss_pred             cccccc---cHHHHHHHHHHhcCCCcEEEEEec
Confidence            997543   677899999999999999999864

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.49  E-value=0.011  Score=52.30  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             cCCCCCC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC---hHHHHHHHHHHhccCceeEeec
Q 026623          135 EGFSTYP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE---VDALNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       135 e~l~~~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~---~~~~~~i~~~~~~~~W~~~~~~  206 (235)
                      |.||..+ ++||+||...-.  +.   .....|..+.+.|+|||++++-|-   ......+.++.+...+.+.+..
T Consensus       200 etL~~~~~~~~d~vfIDaD~--y~---~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i~~~i~~  270 (282)
T 2wk1_A          200 DTLPTAPIDTLAVLRMDGDL--YE---STWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDIADELIT  270 (282)
T ss_dssp             HHSTTCCCCCEEEEEECCCS--HH---HHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTCCSCCEE
T ss_pred             HHHhhCCCCCEEEEEEcCCc--cc---cHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence            3466555 899999985422  10   124778899999999999888873   3346677788777777765443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.31  E-value=0.037  Score=48.58  Aligned_cols=129  Identities=14%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHH----HHHHcCc--cccccc-cccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLG----VIYERGL--IGIYHD-WCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~----~~~~Rgl--~~~~~~-~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...+|||+||++|++..+.+.... +..|.++|.-.+=.    ....-|-  +..... +-..++  +..+|.|.|...=
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDIge  154 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDIGE  154 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECCCC
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEecCC
Confidence            356999999999999996665432 56899999852100    0011121  111110 001233  4679999996655


Q ss_pred             ccCCCCCChH-----HHHHHHhhhhcCCcEEEEEe----ChHHHHHHHHHHhccCceeE---eecCCCCCCCCceEEE
Q 026623          154 SLYENTCKPE-----DILLEMDRILRPEGAVIFRD----EVDALNKVRKFAEGMRWDTK---MMDHEDGPLMPEKILI  219 (235)
Q Consensus       154 ~h~~~~~~~~-----~~L~Em~RVLRPGG~lii~d----~~~~~~~i~~~~~~~~W~~~---~~~~~~~~~~~e~~l~  219 (235)
                      +.- + ..++     .+|.=+.+.|++ |.|+|--    .+++++.++++-+.  |...   .+.+-+.  ..|.+++
T Consensus       155 Ss~-~-~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~--fgg~lVR~P~SRns--ThEMY~V  225 (267)
T 3p8z_A          155 SSP-S-PTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRK--HGGMLVRNPLSRNS--THEMYWI  225 (267)
T ss_dssp             CCS-C-HHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHH--HCCEEECCTTSCTT--CCCEEEE
T ss_pred             CCC-C-hhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHH--hCCEeEeCCCCCCC--cceEEEE
Confidence            321 1 0111     244444678888 7888864    23344555444322  3332   3332222  3677776

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.17  E-value=0.0042  Score=54.53  Aligned_cols=42  Identities=19%  Similarity=-0.022  Sum_probs=35.7

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER  124 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R  124 (235)
                      .....|||.+||+|.++.+....+   .+++++|.+ .++..+.+|
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKER  276 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence            346799999999999988888765   479999999 888888776

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=95.94  E-value=0.0027  Score=56.60  Aligned_cols=76  Identities=13%  Similarity=0.019  Sum_probs=50.8

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--CccccccccccCCCC----CC-Cccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--GLIGIYHDWCEGFST----YP-RTYD  145 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--gl~~~~~~~~e~l~~----~p-~sFD  145 (235)
                      +..+...+...++|.+||.|+.+.+|++++   ..|+++|.. .++..+.+-  +-+..+|+..+.++.    .. +.||
T Consensus        15 le~L~~~~gg~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~vD   91 (285)
T 1wg8_A           15 LDLLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVD   91 (285)
T ss_dssp             HHHHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             HHhhCCCCCCEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCcC
Confidence            334444456799999999999999999873   369999999 888877651  112344544444431    12 5688


Q ss_pred             eeeehhh
Q 026623          146 LIHANGV  152 (235)
Q Consensus       146 lV~a~~v  152 (235)
                      .|.++..
T Consensus        92 gIL~DLG   98 (285)
T 1wg8_A           92 GILADLG   98 (285)
T ss_dssp             EEEEECS
T ss_pred             EEEeCCc
Confidence            8886433

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.43  E-value=0.17  Score=48.29  Aligned_cols=144  Identities=17%  Similarity=0.123  Sum_probs=77.3

Q ss_pred             CCCceEeeeccccchHHHHHhc----CCC--------ceeEEeecCcc-ccHHHHHH----cCcc--ccccccccCCCC-
Q 026623           80 RRYRNVMDMNAGLGGFAAALES----PKS--------WVMNVVPTTAK-NTLGVIYE----RGLI--GIYHDWCEGFST-  139 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~----~~~--------~~~~V~~~D~s-~~L~~~~~----Rgl~--~~~~~~~e~l~~-  139 (235)
                      ....+|+|-.||+|+|.....+    ...        ...++.|.|.. .+..++.-    +|..  ...+...-..|. 
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR  295 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence            4566899999999999654432    110        01257888887 55555432    3431  222222211221 


Q ss_pred             --CC-Cccceeeehhhhcc---------CC---CCCCh-HHHHHHHhhhhc-------CCcEEEEEeChHHH------HH
Q 026623          140 --YP-RTYDLIHANGVFSL---------YE---NTCKP-EDILLEMDRILR-------PEGAVIFRDEVDAL------NK  190 (235)
Q Consensus       140 --~p-~sFDlV~a~~vl~h---------~~---~~~~~-~~~L~Em~RVLR-------PGG~lii~d~~~~~------~~  190 (235)
                        .+ ..||+|++|==|.-         ++   ...+. ..++.-|.+.||       |||.+.+--+..++      .+
T Consensus       296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~  375 (530)
T 3ufb_A          296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISAR  375 (530)
T ss_dssp             GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHH
T ss_pred             hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHH
Confidence              12 57999999655531         10   01111 135566777776       79998877554432      34


Q ss_pred             HHHHHhccCceeEeecCCCCCC-----CCceEEEEEec
Q 026623          191 VRKFAEGMRWDTKMMDHEDGPL-----MPEKILIAVKQ  223 (235)
Q Consensus       191 i~~~~~~~~W~~~~~~~~~~~~-----~~e~~l~~~k~  223 (235)
                      |++.+-.-++--.+...+.+-+     -+--|||.+|.
T Consensus       376 iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~  413 (530)
T 3ufb_A          376 IKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRS  413 (530)
T ss_dssp             HHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESS
T ss_pred             HHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECC
Confidence            6665444455433444333322     34468888875

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.22  E-value=0.13  Score=46.03  Aligned_cols=136  Identities=20%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-Cccceeeeh---hhhccC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHAN---GVFSLY  156 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~---~vl~h~  156 (235)
                      ..+|+|+-||.|++...+...+.  -.+..+|.. ..+...... .....+.+...+.... ..+|+|+++   .-|+..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N-~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~a   87 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMN-FGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSIS   87 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHH-HSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHH-cCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcchh
Confidence            35899999999999999988773  346778876 444432221 1111111112222111 358999974   233321


Q ss_pred             C-------CCCChHHHHHHHhhhhcCCcEEEEEeChH---------HHHHHHHHHhc----cCceeEeecCCCCCCCCce
Q 026623          157 E-------NTCKPEDILLEMDRILRPEGAVIFRDEVD---------ALNKVRKFAEG----MRWDTKMMDHEDGPLMPEK  216 (235)
Q Consensus       157 ~-------~~~~~~~~L~Em~RVLRPGG~lii~d~~~---------~~~~i~~~~~~----~~W~~~~~~~~~~~~~~e~  216 (235)
                      .       .+..+-.-+.++-+.+||-  +++-++..         .+..|.+.+++    +.|.+.....=.-|+.+++
T Consensus        88 g~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R  165 (327)
T 2c7p_A           88 GKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRER  165 (327)
T ss_dssp             SCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEE
T ss_pred             cccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceE
Confidence            1       1222333344444457894  45554322         23334333333    4455432111135667777


Q ss_pred             EEE-EEe
Q 026623          217 ILI-AVK  222 (235)
Q Consensus       217 ~l~-~~k  222 (235)
                      +++ +.+
T Consensus       166 ~~iv~~~  172 (327)
T 2c7p_A          166 IYMICFR  172 (327)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEEe
Confidence            755 443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.90  E-value=0.036  Score=48.47  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             hHHHHHHHhhhhcCCcEEEEE
Q 026623          162 PEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +..++.|+.|+|||||.+++.
T Consensus        76 l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           76 LDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEE
Confidence            346889999999999999886

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.09  E-value=0.043  Score=49.04  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=59.6

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC-CCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS-TYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~-~~p~sFDlV~a  149 (235)
                      +.....+||-+|||. |.++..+++. +.  ..|+.+|.+ +.++.+.+.|....+.    ++.+.+. ..++.||+|+-
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid  264 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALE  264 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEE
Confidence            334567999999986 6677777653 32  247788877 7788887777532221    0111110 01236898874


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ..         .-...+.+..+.|||||.+++.
T Consensus       265 ~~---------g~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          265 ST---------GSPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             CS---------CCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CC---------CCHHHHHHHHHHHhcCCEEEEe
Confidence            11         1246789999999999999875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.94  E-value=0.079  Score=47.07  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             CCccceeeehhhhcc-----CCC------CCChHHHHHHHhhhhcCCcEEEEE
Q 026623          141 PRTYDLIHANGVFSL-----YEN------TCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       141 p~sFDlV~a~~vl~h-----~~~------~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +++||+|+++==+..     +.+      .+.+..+|.|+.|+|||||.+++.
T Consensus        31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            478999988522210     100      013678999999999999999996

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=93.81  E-value=0.22  Score=44.65  Aligned_cols=79  Identities=15%  Similarity=0.044  Sum_probs=52.1

Q ss_pred             cCCCCCC-CccceeeehhhhccCCCCCCh----HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCC
Q 026623          135 EGFSTYP-RTYDLIHANGVFSLYENTCKP----EDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHED  209 (235)
Q Consensus       135 e~l~~~p-~sFDlV~a~~vl~h~~~~~~~----~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~  209 (235)
                      +.|+..+ ..||+++- +.|+-   ..++    +.++.+|.|.++|||.|+--....   .|++-+....+.|....   
T Consensus       177 ~~l~~l~~~~~Da~fl-DgFsP---~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag---~VRR~L~~aGF~V~k~~---  246 (308)
T 3vyw_A          177 KRIKEVENFKADAVFH-DAFSP---YKNPELWTLDFLSLIKERIDEKGYWVSYSSSL---SVRKSLLTLGFKVGSSR---  246 (308)
T ss_dssp             HHGGGCCSCCEEEEEE-CCSCT---TTSGGGGSHHHHHHHHTTEEEEEEEEESCCCH---HHHHHHHHTTCEEEEEE---
T ss_pred             HHHhhhcccceeEEEe-CCCCc---ccCcccCCHHHHHHHHHHhCCCcEEEEEeCcH---HHHHHHHHCCCEEEecC---
Confidence            3355444 57999986 34552   2233    599999999999999998655554   45666777888887543   


Q ss_pred             CCCCCceEEEEEec
Q 026623          210 GPLMPEKILIAVKQ  223 (235)
Q Consensus       210 ~~~~~e~~l~~~k~  223 (235)
                      |...+-..+++.++
T Consensus       247 G~g~KReml~A~~~  260 (308)
T 3vyw_A          247 EIGRKRKGTVASLK  260 (308)
T ss_dssp             CC---CEEEEEESS
T ss_pred             CCCCCCceeEEecC
Confidence            33345567888764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.61  E-value=0.071  Score=47.17  Aligned_cols=90  Identities=13%  Similarity=0.056  Sum_probs=59.6

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhcc
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      +.....+||-+|||. |.++..|++.-  ..+|+.++.+ +.++.+.+.|....+. .-+.+   .+.||+|+-.     
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa~~v~~-~~~~~---~~~~D~vid~-----  241 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALSMGVKHFYT-DPKQC---KEELDFIIST-----  241 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHHTTCSEEES-SGGGC---CSCEEEEEEC-----
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcCCCeecC-CHHHH---hcCCCEEEEC-----
Confidence            444567899999875 66777776532  2368888888 8888888877543331 11222   2378988741     


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ...    ...+.+..+.|||||.+++.
T Consensus       242 ~g~----~~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          242 IPT----HYDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             CCS----CCCHHHHHTTEEEEEEEEEC
T ss_pred             CCc----HHHHHHHHHHHhcCCEEEEE
Confidence            111    13577888999999999986

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.41  E-value=0.17  Score=43.26  Aligned_cols=21  Identities=10%  Similarity=0.048  Sum_probs=19.2

Q ss_pred             hHHHHHHHhhhhcCCcEEEEE
Q 026623          162 PEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +..+|.|+.|+|+|||.+++.
T Consensus        53 ~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A           53 TYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCeEEEEE
Confidence            468899999999999999998

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.35  E-value=0.23  Score=44.04  Aligned_cols=95  Identities=15%  Similarity=0.066  Sum_probs=60.0

Q ss_pred             hCCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c-----ccccCCC-CCCCccc
Q 026623           77 IGTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H-----DWCEGFS-TYPRTYD  145 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~-----~~~e~l~-~~p~sFD  145 (235)
                      .+.....+||-+|||. |.++..|++. +.  ..|+.+|.+ +.++.+.+.|....+  .     ++.+.+. ..++.||
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D  244 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGA--AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPE  244 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCC
Confidence            3444567899999975 6777777653 31  268888877 778888777753222  1     0111110 0014689


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+-..         .-...+.+..+.|||||.+++.
T Consensus       245 ~vid~~---------g~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          245 VTIECT---------GAEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             EEEECS---------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECC---------CChHHHHHHHHHhcCCCEEEEE
Confidence            887411         1246788999999999999875

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=93.19  E-value=0.22  Score=44.71  Aligned_cols=136  Identities=15%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-CccccccccccCCCC--CC-Cccceeeehhh---hc
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GLIGIYHDWCEGFST--YP-RTYDLIHANGV---FS  154 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl~~~~~~~~e~l~~--~p-~sFDlV~a~~v---l~  154 (235)
                      .+|+|+-||.|+++..+...+.-.-.|.++|.. ..++..... +-...++.....+..  .+ ..+|+|+++.=   |+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            479999999999999998766322357888887 555543332 111111211122221  11 26899997432   33


Q ss_pred             cCCCC---CC-hHHHHHHHhhhh---c--CCcEEEEEeCh------HHHHHHHHHHhccCceeE--eecCC--CCCCCCc
Q 026623          155 LYENT---CK-PEDILLEMDRIL---R--PEGAVIFRDEV------DALNKVRKFAEGMRWDTK--MMDHE--DGPLMPE  215 (235)
Q Consensus       155 h~~~~---~~-~~~~L~Em~RVL---R--PGG~lii~d~~------~~~~~i~~~~~~~~W~~~--~~~~~--~~~~~~e  215 (235)
                      ..-.+   .+ -..++.|+.|++   |  |-  +++-++.      .....+.+.++.+...+.  +.+..  .-|+.++
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~  160 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL  160 (343)
T ss_dssp             -------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCC
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccccCHHHHHHHHHHHHHCCCeeEEEEEEHHHCCCCCccc
Confidence            21101   11 113555555555   4  64  3333322      234445555555544433  22222  2566777


Q ss_pred             eEEEE
Q 026623          216 KILIA  220 (235)
Q Consensus       216 ~~l~~  220 (235)
                      ++++.
T Consensus       161 R~~iv  165 (343)
T 1g55_A          161 RYFLI  165 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77655

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.75  E-value=0.11  Score=45.15  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=59.2

Q ss_pred             hhhCCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehh
Q 026623           75 SLIGTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        75 ~~l~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      ...+.....+||=.|||. |.++..|++. +   ..|+.++ + +.++.+.+-|....+.+ .+.+   .+.||+|+-..
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G---a~Vi~~~-~~~~~~~~~~lGa~~v~~d-~~~v---~~g~Dvv~d~~  207 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG---YVVDLVS-ASLSQALAAKRGVRHLYRE-PSQV---TQKYFAIFDAV  207 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT---CEEEEEC-SSCCHHHHHHHTEEEEESS-GGGC---CSCEEEEECC-
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEE-ChhhHHHHHHcCCCEEEcC-HHHh---CCCccEEEECC
Confidence            333445578999999963 6677777653 4   3688888 6 88888888776444433 4444   67899987311


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                                =...+.+..+.|||||.+++.
T Consensus       208 ----------g~~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          208 ----------NSQNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ----------------TTGGGEEEEEEEEEE
T ss_pred             ----------CchhHHHHHHHhcCCCEEEEE
Confidence                      112346778999999999886

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.37  E-value=0.13  Score=41.32  Aligned_cols=92  Identities=16%  Similarity=0.102  Sum_probs=55.5

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccc-----cCCC--CCCCccce
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC-----EGFS--TYPRTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~-----e~l~--~~p~sFDl  146 (235)
                      +....++||-.|+  |.|..++.+.. .+   .+|+.++.+ +.++.+.+.|....+ +..     +.+.  +..+.+|+
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~D~  110 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGYGVDV  110 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHcCCCEEe-eCCcHHHHHHHHHHhCCCCCeE
Confidence            3345679999995  55666555554 34   357777777 666666655532111 110     1010  11246899


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+.+..          ...+.+..+.|||||.+++.-
T Consensus       111 vi~~~g----------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          111 VLNSLA----------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             EEECCC----------THHHHHHHHTEEEEEEEEECS
T ss_pred             EEECCc----------hHHHHHHHHHhccCCEEEEEc
Confidence            875221          257889999999999998764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.95  E-value=0.11  Score=46.97  Aligned_cols=101  Identities=20%  Similarity=0.130  Sum_probs=61.2

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccc-cCC-----C-CCC-Cccce
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC-EGF-----S-TYP-RTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~-e~l-----~-~~p-~sFDl  146 (235)
                      +.....+||-+|||. |.++..|++. +.  ..|+.+|.+ +.++.+.+.|.. .+ +.- +.+     . ..+ +.||+
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~-~i-~~~~~~~~~~~~~~~~~g~g~Dv  257 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGA--ACVIVGDQNPERLKLLSDAGFE-TI-DLRNSAPLRDQIDQILGKPEVDC  257 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHTTTCE-EE-ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCc-EE-cCCCcchHHHHHHHHhCCCCCCE
Confidence            334567999999986 7777777763 31  268888877 788888777752 22 111 111     0 012 36999


Q ss_pred             eeehhhhccCCC-----CCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYEN-----TCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~-----~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+-...-.....     ..+....+.+..+.|||||.+++.
T Consensus       258 vid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          258 GVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             EEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            875322110000     001235789999999999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.87  E-value=0.21  Score=43.87  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             HHHHhhhhCCCCCceEeeeccc--cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC----C--C
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAG--LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF----S--T  139 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG--~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l----~--~  139 (235)
                      |..+....+.....+||=.|||  .|.+++.+++. +   .+|+.++.+ +.++.+.+-|....+....+.+    -  +
T Consensus       133 ~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~  209 (340)
T 3gms_A          133 WVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILN---FRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELT  209 (340)
T ss_dssp             HHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHh
Confidence            3333333344456899999987  56777777653 4   368888877 7888887766432221000111    0  1


Q ss_pred             CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ..+.||+|+-+..          ...+.+..+.|||||.+++.
T Consensus       210 ~~~g~Dvvid~~g----------~~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          210 NGIGADAAIDSIG----------GPDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             TTSCEEEEEESSC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCCcEEEECCC----------ChhHHHHHHHhcCCCEEEEE
Confidence            1257999875211          23345556899999999876

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=91.82  E-value=0.5  Score=43.03  Aligned_cols=111  Identities=19%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehh
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +++.+... ..+||++|-+.|-++..|...    .+++.+.-| -........|+.....   ......+..||+|..  
T Consensus        38 l~~~~~~~-~~~~l~~n~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~d~v~~--  107 (381)
T 3dmg_A           38 LQKTVEPF-GERALDLNPGVGWGSLPLEGR----MAVERLETSRAAFRCLTASGLQARLA---LPWEAAAGAYDLVVL--  107 (381)
T ss_dssp             HHTTCCCC-SSEEEESSCTTSTTTGGGBTT----BEEEEEECBHHHHHHHHHTTCCCEEC---CGGGSCTTCEEEEEE--
T ss_pred             HHHHHHHh-CCcEEEecCCCCccccccCCC----CceEEEeCcHHHHHHHHHcCCCcccc---CCccCCcCCCCEEEE--
Confidence            34445443 358999999999888787632    234444334 2233344456543211   112224589999874  


Q ss_pred             hhccCCC-CC--ChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHHHh
Q 026623          152 VFSLYEN-TC--KPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKFAE  196 (235)
Q Consensus       152 vl~h~~~-~~--~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~~~  196 (235)
                         .+|. +.  ..+..|.++.+.|+|||.+++. ++.+-++.+.+.++
T Consensus       108 ---~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~  153 (381)
T 3dmg_A          108 ---ALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEAR  153 (381)
T ss_dssp             ---ECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHH
T ss_pred             ---ECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHH
Confidence               3332 22  3578999999999999998876 45555555555544

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.77  E-value=0.075  Score=46.78  Aligned_cols=93  Identities=12%  Similarity=0.033  Sum_probs=60.1

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC----CCCCCccceeeeh
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF----STYPRTYDLIHAN  150 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l----~~~p~sFDlV~a~  150 (235)
                      +.....+||-.|||. |.++..+++. +   ..|+.+|.+ +.++.+.+.|....+...-+.+    --..+.+|+|+-.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~  239 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMG---LRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVT  239 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEES
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEe
Confidence            334567899999975 7777777763 4   368888887 8888888877533221000110    0001257877631


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .         .-...+.+..+.|||||.+++.
T Consensus       240 ~---------g~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          240 A---------VSPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             S---------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             C---------CCHHHHHHHHHHhccCCEEEEe
Confidence            1         1257889999999999999886

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=91.74  E-value=0.31  Score=43.64  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=60.5

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC----CCCCccce
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS----TYPRTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~----~~p~sFDl  146 (235)
                      +.....+||=.|+|. |.++..|++. +.  ..|+.++.+ +.++.+.+.|....+.    ++.+.+.    ..++.||+
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGA--TTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCE
Confidence            334467899999875 6666666653 42  268888888 7788888877533221    1111110    12347999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+-.         ..-...+.+..+.|||||.+++.
T Consensus       257 vid~---------~G~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          257 VIEC---------AGVAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEEC---------SCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEC---------CCCHHHHHHHHHHhccCCEEEEE
Confidence            8741         11247889999999999999886

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.58  E-value=0.12  Score=46.46  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=57.5

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCCCCCCccceeeehh
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +.....+||-+|+|. |.++..|++.-  ...|+.++.+ +.++.+.+-|....+  .  ++.+.+.   +.||+|+-..
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~  265 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTV  265 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECC
Confidence            334567899999975 66777776532  1358888877 788888776742221  1  1112222   5789987421


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .-         ...+.+..+.|||||.+++.
T Consensus       266 g~---------~~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          266 AA---------PHNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             SS---------CCCHHHHHTTEEEEEEEEEC
T ss_pred             CC---------HHHHHHHHHHhccCCEEEEe
Confidence            11         13467788999999998875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.58  E-value=0.18  Score=44.64  Aligned_cols=94  Identities=14%  Similarity=0.142  Sum_probs=59.3

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIH  148 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~  148 (235)
                      +.....+||=+|||. |.++..+++. +.  ..|+.+|.+ +.++.+.+.|....+.    ++.+.+-  +..+.||+|+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGA--GRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTC--SSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEE
Confidence            334467899999875 6677777664 32  247788887 7788888877533221    0111110  1225799987


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      -..         .-...+.+..+.|||||.+++.
T Consensus       241 d~~---------g~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          241 IAG---------GDVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             ECS---------SCTTHHHHHHHHEEEEEEEEEC
T ss_pred             ECC---------CChHHHHHHHHHHhcCCEEEEe
Confidence            411         1125788999999999999865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.44  E-value=0.36  Score=42.63  Aligned_cols=93  Identities=16%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccc-cCCC------CC---CCcc
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC-EGFS------TY---PRTY  144 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~-e~l~------~~---p~sF  144 (235)
                      +.....+||-.|||. |.++..|++. +   ..|+.++.+ +.++.+.+.|....+.... +.+.      +.   .+.|
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~  241 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP  241 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCC
Confidence            334467899999875 6667777653 4   347888877 7788887777532221000 1110      01   2468


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+|+-+.         .-...+.+..+.|||||.+++.
T Consensus       242 D~vid~~---------g~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          242 NVTIDCS---------GNEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             SEEEECS---------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CEEEECC---------CCHHHHHHHHHHHhcCCEEEEE
Confidence            9887411         1245788999999999999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=90.96  E-value=0.27  Score=43.81  Aligned_cols=93  Identities=10%  Similarity=0.007  Sum_probs=58.1

Q ss_pred             CCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCccceee
Q 026623           79 TRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLIH  148 (235)
Q Consensus        79 ~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV~  148 (235)
                      .....+||-.|||. |.++..+++. +.  ..|+.++.+ +.++.+.+-|....+  .+    +.+.+. ..++.||+|+
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vi  266 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGA--ARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSF  266 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEE
Confidence            34467899999875 5666666653 32  258888877 788888777753222  10    111110 0124689887


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      -.         ..-...+.+..+.|||| |.+++.
T Consensus       267 d~---------~g~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          267 EV---------IGRLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             EC---------SCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             EC---------CCCHHHHHHHHHHhhcCCcEEEEe
Confidence            41         11246788999999999 998875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=90.94  E-value=0.2  Score=44.54  Aligned_cols=94  Identities=9%  Similarity=-0.077  Sum_probs=58.7

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV  147 (235)
                      +.....+||-.|+|. |.++..|++. +.  ..|+.++.+ +.++.+.+-|....+  .+    +.+.+. ..++.||+|
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~v  264 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA--SRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYS  264 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEE
Confidence            334567899999875 5666666653 31  258888877 788888777753222  11    111110 012368988


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +-..         .-...+.+..+.|||| |.+++.
T Consensus       265 id~~---------g~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          265 FECI---------GNVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             EECS---------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EECC---------CcHHHHHHHHHhhccCCcEEEEE
Confidence            7411         1246789999999999 999875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=90.83  E-value=0.34  Score=44.17  Aligned_cols=49  Identities=14%  Similarity=0.086  Sum_probs=36.8

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI  121 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~  121 (235)
                      ++..|...+...++|..||.|+-+.+|++.-.-...|+++|.. .++..+
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A   98 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA   98 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            3444555556789999999999999998751112469999998 788776

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.82  E-value=0.16  Score=43.44  Aligned_cols=42  Identities=14%  Similarity=0.018  Sum_probs=33.9

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER  124 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R  124 (235)
                      .....|||..||+|+.+.+....+   .+++++|.+ .....+.+|
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r  253 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFV  253 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence            346799999999999887777665   478899998 777777766

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.74  E-value=0.23  Score=44.25  Aligned_cols=94  Identities=9%  Similarity=-0.026  Sum_probs=58.5

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV  147 (235)
                      +.....+||-.|||. |.++..+++. +.  ..|+.++.+ +.++.+.+-|....+  .+    +.+.+. ..++.||+|
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~v  266 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA--KRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFS  266 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEE
Confidence            334467899999865 5666666653 32  258888877 788888777753222  10    101010 011368988


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +-..         .-...+.+..+.|||| |.+++.
T Consensus       267 id~~---------g~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          267 LECV---------GNVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             EECS---------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EECC---------CCHHHHHHHHHHhhcCCcEEEEE
Confidence            7411         1246788999999999 998875

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=90.72  E-value=0.37  Score=43.26  Aligned_cols=100  Identities=9%  Similarity=0.029  Sum_probs=66.2

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcC--------------------------cc-c
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERG--------------------------LI-G  128 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rg--------------------------l~-~  128 (235)
                      .....|+.+|||..+.+-.|..... ...+..+|.++++..    +.+.+                          ++ .
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            3468999999999999989876311 246889999876663    22211                          01 0


Q ss_pred             cc--cccc----cCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          129 IY--HDWC----EGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       129 ~~--~~~~----e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+  .+|-    +..+ -++...++++-.+|.+++ ......+|..+.+.+ |+|.+++-|
T Consensus       175 DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          175 DLNDITETTRLLDVCT-KREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             CTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             CCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEEEEe
Confidence            11  1342    2233 237788999999999985 345667777777766 888887665

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=90.48  E-value=0.25  Score=43.99  Aligned_cols=94  Identities=10%  Similarity=-0.023  Sum_probs=58.9

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV  147 (235)
                      +.....+||=+|||. |.++..|++. +.  ..|+.++.+ +.++.+.+-|....+  .+    +.+.+. ..++.||+|
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvv  265 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYA  265 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence            334467899999875 5666666653 31  258888877 788888877753222  10    111110 012468998


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +-.         ..-...+.+..+.|||| |.+++.
T Consensus       266 id~---------~g~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          266 VEC---------AGRIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             EEC---------SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEC---------CCCHHHHHHHHHHHhcCCCEEEEE
Confidence            741         11246788999999999 998875

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=90.31  E-value=0.96  Score=40.43  Aligned_cols=139  Identities=17%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEE-eecCcc-ccHHHHHHcCccc-cccccccCCCC--CC-Cccceeeehhh---
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNV-VPTTAK-NTLGVIYERGLIG-IYHDWCEGFST--YP-RTYDLIHANGV---  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V-~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~--~p-~sFDlV~a~~v---  152 (235)
                      .-+|+|+-||.|++...|...+.-.--+ .++|.. .... .++.-... .++.....+..  .+ ..+|+++++.=   
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~-ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~   88 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANK-IYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQP   88 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHH-HHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHH-HHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccC
Confidence            3589999999999999998776311235 588887 3333 33332211 11111122221  12 26899996422   


Q ss_pred             h--ccC---CCCCCh-HHHHHHHhh-hh-----cCCcEEEEEeChH------HHHHHHHHHhccCceeE--eecCC--CC
Q 026623          153 F--SLY---ENTCKP-EDILLEMDR-IL-----RPEGAVIFRDEVD------ALNKVRKFAEGMRWDTK--MMDHE--DG  210 (235)
Q Consensus       153 l--~h~---~~~~~~-~~~L~Em~R-VL-----RPGG~lii~d~~~------~~~~i~~~~~~~~W~~~--~~~~~--~~  210 (235)
                      |  +..   ....+. ..++.|+.| ++     ||  .+++-|+..      ..+.|.+.++.+...+.  +.+..  .-
T Consensus        89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P--~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGv  166 (327)
T 3qv2_A           89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP--KHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGI  166 (327)
T ss_dssp             CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC--SEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTC
T ss_pred             cccccCCCCCCCccccchhHHHHHHHHHHHhccCC--CEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCC
Confidence            3  211   111232 267888888 66     45  456665432      34445555555544443  22222  25


Q ss_pred             CCCCceEE-EEEec
Q 026623          211 PLMPEKIL-IAVKQ  223 (235)
Q Consensus       211 ~~~~e~~l-~~~k~  223 (235)
                      |+.+++++ ++.+.
T Consensus       167 PQ~R~R~fivg~r~  180 (327)
T 3qv2_A          167 PNSRTRYYVMARLT  180 (327)
T ss_dssp             SBCCCEEEEEEESS
T ss_pred             CccceEEEEEEEeC
Confidence            66778776 55444

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=90.26  E-value=0.35  Score=42.21  Aligned_cols=91  Identities=14%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccccccc--C----CC-CCCCccce
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE--G----FS-TYPRTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e--~----l~-~~p~sFDl  146 (235)
                      +....++||-.||  |.|.+++.++. .+   .+|+.+|.+ +.++.+.+.|.... .+..+  .    +. ...+.+|+
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~  217 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKG---CKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDC  217 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHhcCCcEE-EecCCHHHHHHHHHHHhCCCCeE
Confidence            3345689999998  56666666654 44   367788876 77776655553111 11111  0    00 01246898


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+.+..          ...+.+..+.|||||.+++.
T Consensus       218 vi~~~g----------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          218 YFDNVG----------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             EEESSC----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEECCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            875222          24588889999999999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.25  E-value=0.27  Score=43.88  Aligned_cols=94  Identities=7%  Similarity=-0.083  Sum_probs=58.5

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV  147 (235)
                      +.....+||=+|||. |.++..|++. +.  ..|+.+|.+ +.++.+.+-|....+  .+    +.+.+. ..++.||+|
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvv  269 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA--SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS  269 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEE
Confidence            334467899999874 5667677653 32  258888877 788888777753222  10    111110 011368888


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +-.     .    .-...+.+..+.|||| |.+++.
T Consensus       270 id~-----~----G~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          270 LDC-----A----GTAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             EES-----S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEC-----C----CCHHHHHHHHHHhhcCCCEEEEE
Confidence            631     1    1246789999999999 998864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=89.78  E-value=0.17  Score=44.65  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=58.0

Q ss_pred             CCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc--c---ccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H---DWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~---~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...+||-+|+|. |.++..|++.-.....|+.++.+ +.++.+.+.|....+  .   ++.+.+. ..+.||+|+-..  
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid~~--  246 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAIDLV--  246 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEESS--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEECC--
Confidence            568999999974 55666666521001358888877 778888777742221  1   1111121 124799987421  


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                             .-...+.+..+.|||||.+++.
T Consensus       247 -------g~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          247 -------GTEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             -------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             -------CChHHHHHHHHHhhcCCEEEEe
Confidence                   1245889999999999998875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=89.53  E-value=0.62  Score=42.19  Aligned_cols=94  Identities=13%  Similarity=0.211  Sum_probs=58.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCc--c-ccHHH-HHHcCccccccccccCCCCCCCccceeeehhhhccC-
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA--K-NTLGV-IYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLY-  156 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~--s-~~L~~-~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~-  156 (235)
                      ..+||.+|.++|.++..|...+++.  +  .|.  + ..+.. ....|+......+...+...+..||+|+.     .+ 
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~~~~~--~--~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~lp  109 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEHKPYS--I--GDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLI-----KVP  109 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGGCCEE--E--ESCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSEEEE-----ECC
T ss_pred             CCCEEEECCCCCHHHHhhccCCceE--E--EhHHHHHHHHHHHHHHcCCCccceEecccccccccCCCEEEE-----EcC
Confidence            3579999999999999988665432  2  232  1 12222 22235533211122334445689999875     33 


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ++...+...|.++...|+||+.+++...
T Consensus       110 k~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          110 KTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence            2333466888899999999999987753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=89.47  E-value=0.38  Score=42.85  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             hHHHHHHHhhhhcCCcEEEEEe
Q 026623          162 PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +...|.|+.|+|+|||.+++.-
T Consensus        85 ~~~~l~~~~rvLk~~G~i~i~~  106 (319)
T 1eg2_A           85 AKRWLAEAERVLSPTGSIAIFG  106 (319)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEc
Confidence            4688999999999999999974

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.43  E-value=0.67  Score=41.58  Aligned_cols=99  Identities=20%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc--c---cccCCC--CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH--D---WCEGFS--TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~--~---~~e~l~--~~p~sFDlV  147 (235)
                      +.....+||-+|||. |.++..|++. +.  ..|+.+|.+ +.++.+.+-|.. .+.  +   +.+.+.  +..+.||+|
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga--~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvv  258 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNPARLAHAKAQGFE-IADLSLDTPLHEQIAALLGEPEVDCA  258 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHcCCc-EEccCCcchHHHHHHHHhCCCCCCEE
Confidence            334567899999876 6777777663 42  257888887 788888887753 211  0   011111  112468998


Q ss_pred             eehhhhc---------cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFS---------LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~---------h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +-...-.         |.+   +....+.+..+.|||||.+++.
T Consensus       259 id~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          259 VDAVGFEARGHGHEGAKHE---APATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             EECCCTTCBCSSTTGGGSB---CTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCCccccccccccccc---chHHHHHHHHHHHhcCCEEEEe
Confidence            7533211         111   2346889999999999999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=89.32  E-value=0.51  Score=42.13  Aligned_cols=94  Identities=11%  Similarity=-0.002  Sum_probs=59.1

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV  147 (235)
                      +.....+||=+|||. |.++..+++. +.  ..|+.+|.+ +.++.+.+-|....+  .+    +.+.+- ..++.||+|
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~v  267 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGA--SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYS  267 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTC--SCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEE
Confidence            334567899999874 6677676653 32  258888877 888888877753322  10    001000 112468988


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +-.         ..-...+.+..+.|||| |.+++.
T Consensus       268 id~---------~g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          268 FEC---------IGNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             EEC---------SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEC---------CCCHHHHHHHHHHhhccCCEEEEE
Confidence            741         12246889999999997 998875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.14  E-value=0.42  Score=41.74  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHH-HHcCccccccccccCC----C-CCCCcccee
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVI-YERGLIGIYHDWCEGF----S-TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~-~~Rgl~~~~~~~~e~l----~-~~p~sFDlV  147 (235)
                      +.....+||-.||  |.|..+..++. .+   .+|+.++.+ +.++.+ .+-|....+....+.+    - ...+.||+|
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v  222 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKG---CRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVF  222 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEE
Confidence            3445689999998  56777777765 34   368888877 777776 5556422111000110    0 013568988


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.+.         . ...+.+..+.|||||.+++.
T Consensus       223 i~~~---------g-~~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          223 FDNV---------G-GEILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EESS---------C-HHHHHHHHTTEEEEEEEEEC
T ss_pred             EECC---------C-cchHHHHHHHHhhCCEEEEE
Confidence            7521         1 35788999999999999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=89.10  E-value=0.12  Score=46.05  Aligned_cols=92  Identities=15%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             CCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c---ccccCCCCCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H---DWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~---~~~e~l~~~p~sFDlV~a  149 (235)
                      +.....+||-+|+|. |.++..+++. +   ..|+.++.+ +.++.+.+-|....+  .   ++.+.+.   +.||+|+-
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G---a~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~---~~~D~vid  249 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMG---AETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF---DTFDLIVV  249 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHT---CEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC---SCEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh---cCCCEEEE
Confidence            334467999999864 5566666653 3   358888877 788888776743222  1   1112222   47899875


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ...-.   .    ...+.+..+.|||||.+++.
T Consensus       250 ~~g~~---~----~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          250 CASSL---T----DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             CCSCS---T----TCCTTTGGGGEEEEEEEEEC
T ss_pred             CCCCC---c----HHHHHHHHHHhcCCCEEEEe
Confidence            32210   0    13456678899999998864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=88.79  E-value=0.61  Score=41.53  Aligned_cols=91  Identities=12%  Similarity=0.213  Sum_probs=59.1

Q ss_pred             CCceEeeec-cc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc---ccccCCC-CCCCccceeeehhh
Q 026623           81 RYRNVMDMN-AG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH---DWCEGFS-TYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~G-CG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~---~~~e~l~-~~p~sFDlV~a~~v  152 (235)
                      ...+||=.| +| .|.++..|++. +  ...|+.++.+ +.++.+.+-|....+.   ++.+.+- ...+.||+|+-.  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~--g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~--  246 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT--DLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFST--  246 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEEC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEEC--
Confidence            467899888 44 47777777763 3  2468888887 7888887777422221   1111111 123679988741  


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                             ..-...+.+..+.|||||.+++.
T Consensus       247 -------~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          247 -------THTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -------SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             -------CCchhhHHHHHHHhcCCCEEEEE
Confidence                   12246889999999999999876

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=87.44  E-value=0.45  Score=42.10  Aligned_cols=88  Identities=15%  Similarity=0.083  Sum_probs=55.1

Q ss_pred             ceEeeecccc-chHH-HHHh-cC-CCceeEEeecCcc-c---cHHHHHHcCccc-ccc--ccccCCCCCCCccceeeehh
Q 026623           83 RNVMDMNAGL-GGFA-AALE-SP-KSWVMNVVPTTAK-N---TLGVIYERGLIG-IYH--DWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        83 r~VLD~GCG~-G~fa-a~L~-~~-~~~~~~V~~~D~s-~---~L~~~~~Rgl~~-~~~--~~~e~l~~~p~sFDlV~a~~  151 (235)
                      .+||=+|+|. |.++ ..++ +. +.  ..|+.++.+ +   .++.+.+.|... .+.  ++.+ +.-.++.||+|+-. 
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga--~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~-  249 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGY--ENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEA-  249 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCC--CEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEEC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCC--cEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEEC-
Confidence            7899999854 5666 7777 53 32  238888887 6   788887777422 111  1111 10002368888631 


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                          .    .-...+.+..+.|||||.+++.
T Consensus       250 ----~----g~~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          250 ----T----GFPKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             ----S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ----C----CChHHHHHHHHHHhcCCEEEEE
Confidence                1    1245788999999999999875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.30  E-value=0.33  Score=43.21  Aligned_cols=93  Identities=18%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             hCCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCC--CCCCcccee
Q 026623           77 IGTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFS--TYPRTYDLI  147 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~--~~p~sFDlV  147 (235)
                      .+.....+||=+|||. |.++..+++. +   .+|+.++.+ +.++.+.+.|....+..    +.+.+-  +..+.||+|
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~v  261 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKATG---AEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI  261 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence            3344567899999875 5566666653 4   368888887 78888877775332210    000000  112479998


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +-...          ...+.+..+.|||||.+++.
T Consensus       262 id~~g----------~~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          262 LEIAG----------GAGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEETT----------SSCHHHHHHHEEEEEEEEEE
T ss_pred             EECCC----------hHHHHHHHHHhhcCCEEEEE
Confidence            75322          13467788899999999976

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=87.23  E-value=5.4  Score=34.51  Aligned_cols=134  Identities=13%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCCCCC-Cccceeeeh---hhhccC-
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFSTYP-RTYDLIHAN---GVFSLY-  156 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~~p-~sFDlV~a~---~vl~h~-  156 (235)
                      +|+|+=||.|+|...|...|.-  -+.++|.. .... .++.-... .++.+...+...+ ...|++++.   .-||.. 
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~--~v~a~e~d~~a~~-ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag   78 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFR--IICANEYDKSIWK-TYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG   78 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCE--EEEEEECCTTTHH-HHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred             eEEEeCcCccHHHHHHHHCCCE--EEEEEeCCHHHHH-HHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence            7999999999999999887742  35567776 3333 22321111 1111112233222 468888863   344421 


Q ss_pred             --CCCCCh-HHHHHHHhhh---hcCCcEEEEEeCh---------HHHHHHHHHHh----ccCceeEeecCCCCCCCCceE
Q 026623          157 --ENTCKP-EDILLEMDRI---LRPEGAVIFRDEV---------DALNKVRKFAE----GMRWDTKMMDHEDGPLMPEKI  217 (235)
Q Consensus       157 --~~~~~~-~~~L~Em~RV---LRPGG~lii~d~~---------~~~~~i~~~~~----~~~W~~~~~~~~~~~~~~e~~  217 (235)
                        +...|. ..++.|+.|+   +||-  +++-|+.         ..+..+...++    .+.|.+.....=.-|+.++++
T Consensus        79 ~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rv  156 (331)
T 3ubt_Y           79 SLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRV  156 (331)
T ss_dssp             EECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEE
T ss_pred             CccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceE
Confidence              111222 2455555555   6894  4555432         22333333333    455554322222356678886


Q ss_pred             E-EEEe
Q 026623          218 L-IAVK  222 (235)
Q Consensus       218 l-~~~k  222 (235)
                      + |+.+
T Consensus       157 fivg~r  162 (331)
T 3ubt_Y          157 FYIGFR  162 (331)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            5 4544

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=87.18  E-value=0.33  Score=42.54  Aligned_cols=91  Identities=14%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHH-HcCcccccccccc--CCC-----CCCCccc
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIY-ERGLIGIYHDWCE--GFS-----TYPRTYD  145 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~-~Rgl~~~~~~~~e--~l~-----~~p~sFD  145 (235)
                      +.....+||-.||  |.|.+++.++. .+   .+|+.++.+ +.++.+. +-|....+ +..+  .+.     ..++.+|
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G---~~V~~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMG---CYVVGSAGSKEKVDLLKTKFGFDDAF-NYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTSCCSEEE-ETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHcCCceEE-ecCCHHHHHHHHHHHhCCCCc
Confidence            3345679999998  56777777665 34   368888877 7777776 44542111 1111  110     0124689


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+.+.         . ...+.+..+.|||||.+++.
T Consensus       228 ~vi~~~---------g-~~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          228 IYFENV---------G-GKMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEEESS---------C-HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECC---------C-HHHHHHHHHHHhcCCEEEEE
Confidence            887521         1 25788899999999999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=87.13  E-value=0.77  Score=40.29  Aligned_cols=92  Identities=17%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             CCCCCceEeeeccc-cchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccc-cCCC----CCCCccceeee
Q 026623           78 GTRRYRNVMDMNAG-LGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC-EGFS----TYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG-~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~-e~l~----~~p~sFDlV~a  149 (235)
                      +.....+||-.|+| .|.++..+++ .+   .+|+.++.+ +.++.+.+-|....+ +.. +.+.    -..+.||+|+-
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~lGa~~~~-d~~~~~~~~~~~~~~~~~d~vid  236 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG---LNVVAVDIGDEKLELAKELGADLVV-NPLKEDAAKFMKEKVGGVHAAVV  236 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHTTCSEEE-CTTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHCCCCEEe-cCCCccHHHHHHHHhCCCCEEEE
Confidence            33446789999986 3666666665 34   368888877 778877766642221 100 1000    00035888864


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.         .....+.+..+.|||||.+++.
T Consensus       237 ~~---------g~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          237 TA---------VSKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             SS---------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CC---------CCHHHHHHHHHHhhcCCEEEEe
Confidence            21         1246788999999999998875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=86.90  E-value=0.72  Score=40.27  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=57.0

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC------CCCCcccee
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS------TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~------~~p~sFDlV  147 (235)
                      +.....+||=.|+  |.|.++..+++. +   .+|+.++.+ +.++.+.+-|....+....+.+.      +..+.||+|
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~v  221 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG---AHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDAS  221 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEE
Confidence            3445689999995  455666666553 4   368888887 77887777664222100001110      123569998


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +-+..          ...+.+..+.|||||.+++.
T Consensus       222 id~~g----------~~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          222 FDSVG----------KDTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             EECCG----------GGGHHHHHHHEEEEEEEEEC
T ss_pred             EECCC----------hHHHHHHHHHhccCCEEEEE
Confidence            75221          14577888999999999885

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.89  E-value=0.49  Score=41.66  Aligned_cols=91  Identities=15%  Similarity=0.095  Sum_probs=56.3

Q ss_pred             CCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCC--CCCCccceeeehh
Q 026623           81 RYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFS--TYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~--~~p~sFDlV~a~~  151 (235)
                      ...+||-+|+|. |.++..+++ .+.  ..|+.++.+ +.++.+.+.|....+  .  ++.+.+.  +..+.||+|+-..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga--~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~  244 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGA--YPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFS  244 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC--CSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence            567899999964 556666655 332  147778877 777777776642221  1  0001110  1124689987421


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                               .-...+.+..+.|||||.+++.
T Consensus       245 ---------g~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          245 ---------GAPKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             ---------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ---------CCHHHHHHHHHHHhcCCEEEEE
Confidence                     1246788999999999998875

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=86.84  E-value=2.3  Score=38.00  Aligned_cols=135  Identities=13%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccc--cccccccCCCC--CC-Cccceeeehh---hhc
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIG--IYHDWCEGFST--YP-RTYDLIHANG---VFS  154 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~--~~~~~~e~l~~--~p-~sFDlV~a~~---vl~  154 (235)
                      -+|+|+-||.|++...|...+.-.--|.++|........+++-...  .++.....+..  .+ ..+|+++++.   -|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            4799999999999999987653123466888873333333332211  11111122321  12 3689998632   232


Q ss_pred             cC---CCCCCh-HHHHHHHhhhh---c-CCcEEEEEeChH------HHHHHHHHHhccCceeE--eecCC--CCCCCCce
Q 026623          155 LY---ENTCKP-EDILLEMDRIL---R-PEGAVIFRDEVD------ALNKVRKFAEGMRWDTK--MMDHE--DGPLMPEK  216 (235)
Q Consensus       155 h~---~~~~~~-~~~L~Em~RVL---R-PGG~lii~d~~~------~~~~i~~~~~~~~W~~~--~~~~~--~~~~~~e~  216 (235)
                      ..   ....+. ..++.|+.|++   | |  .+++-++..      ..+.|.+.++.+...+.  +.+..  .-|+.+++
T Consensus        84 ~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R  161 (333)
T 4h0n_A           84 RNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLR  161 (333)
T ss_dssp             ETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCE
T ss_pred             hhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceE
Confidence            11   011111 13556666665   4 6  455665432      23445555555544433  22222  25667777


Q ss_pred             EEE
Q 026623          217 ILI  219 (235)
Q Consensus       217 ~l~  219 (235)
                      +++
T Consensus       162 ~fi  164 (333)
T 4h0n_A          162 YYC  164 (333)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=86.47  E-value=0.27  Score=42.42  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=55.1

Q ss_pred             CCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--c---ccccCCCCCCCccceeeeh
Q 026623           80 RRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H---DWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        80 ~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~---~~~e~l~~~p~sFDlV~a~  150 (235)
                      ....+||-.||  |.|.++..+++ .+   .+|+.++.+ +.++.+.+-|....+  .   ++.+.+    +.||+|+- 
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~----~~~d~vid-  195 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW----GGLDLVLE-  195 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT----TSEEEEEE-
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh----cCceEEEE-
Confidence            34679999998  55677777765 34   368888876 777777666642211  1   111222    56888864 


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .     ..     ..+.+..+.|||||.+++.
T Consensus       196 ~-----g~-----~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          196 V-----RG-----KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             C-----SC-----TTHHHHHTTEEEEEEEEEC
T ss_pred             C-----CH-----HHHHHHHHhhccCCEEEEE
Confidence            1     11     3577888999999998864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=86.37  E-value=0.97  Score=39.08  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=55.9

Q ss_pred             eEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccc--ccccccCCCCCCCccceeeehhhhccCC
Q 026623           84 NVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGI--YHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        84 ~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~--~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      +||=.||  |.|.++..|++. +   ..|+.++.+ +.++.+.+-|....  +.+..+......+.+|+|+-.     . 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~G---a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~-----~-  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLG---YQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT-----V-  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEES-----S-
T ss_pred             eEEEECCCcHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEEC-----C-
Confidence            3898887  567777777763 4   358888877 78888877774222  222111011123678887631     1 


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                         . ...+.+..+.|||||.+++.
T Consensus       220 ---g-~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          220 ---G-DKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             ---C-HHHHHHHHHTEEEEEEEEEC
T ss_pred             ---C-cHHHHHHHHHHhcCCEEEEE
Confidence               1 34889999999999999876

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.09  E-value=2.5  Score=37.15  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             HHHHHHHhhhhCCCCCceEeeecccc-c-hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC-CCC
Q 026623           67 VNAYKKMNSLIGTRRYRNVMDMNAGL-G-GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST-YPR  142 (235)
Q Consensus        67 v~~y~~~l~~l~~~~~r~VLD~GCG~-G-~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~-~p~  142 (235)
                      ++++...++.+..-...+|.=+|+|. | .++..|.+.+. ..+|+..|.+ +.++.+.+.|.+....   ..+.- .-.
T Consensus        18 ~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~-~~~V~~~dr~~~~~~~a~~~G~~~~~~---~~~~~~~~~   93 (314)
T 3ggo_A           18 GSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGT---TSIAKVEDF   93 (314)
T ss_dssp             -----------CCCSCSEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEE---SCTTGGGGG
T ss_pred             ccCcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHCCCcchhc---CCHHHHhhc
Confidence            34455544433333356888899885 3 46777777663 2378899988 7888888888643221   21221 124


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC--hHHHHHHHHHHhc
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE--VDALNKVRKFAEG  197 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~--~~~~~~i~~~~~~  197 (235)
                      ..|+|+.+     ++. ..+..++.++...|+||..++-.-.  ...+..+++....
T Consensus        94 ~aDvVila-----vp~-~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~  144 (314)
T 3ggo_A           94 SPDFVMLS-----SPV-RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  144 (314)
T ss_dssp             CCSEEEEC-----SCG-GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             cCCEEEEe-----CCH-HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC
Confidence            57888752     221 2467889999999999876543322  2446666666544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=86.06  E-value=0.81  Score=40.25  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc---ccccCCC--CCCCccceee
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH---DWCEGFS--TYPRTYDLIH  148 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~---~~~e~l~--~~p~sFDlV~  148 (235)
                      +.....+||=.||  |.|.++..+++. +   ..|+.++.+ +.++.+.+-|....+.   ++.+.+-  +..+.||+|+
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvi  232 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMG---AKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVV  232 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEE
Confidence            3345689999997  556777777653 4   368888876 7788877766432221   1111110  1124799987


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      -+..          ...+.+..+.|||||.+++.
T Consensus       233 d~~g----------~~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          233 DPIG----------GPAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             ESCC------------CHHHHHHTEEEEEEEEEC
T ss_pred             ECCc----------hhHHHHHHHhhcCCCEEEEE
Confidence            5221          13577888999999999875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=85.97  E-value=1  Score=39.27  Aligned_cols=94  Identities=13%  Similarity=0.023  Sum_probs=57.8

Q ss_pred             CCCCCceEeeeccccch-HHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceee
Q 026623           78 GTRRYRNVMDMNAGLGG-FAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIH  148 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~-faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~  148 (235)
                      +..+..+||=+|+|.++ +++.++. .+  ...|+.+|.+ +.++.+.+.|....+.    ++.+.+-  +...-+|.++
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~--g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~  237 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF--GAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAI  237 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS--CCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC--CCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence            33456789999999765 4444443 33  3578899988 7788888777533321    1111110  1224455554


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      -.         ..-...+....+.|||||.+++.
T Consensus       238 ~~---------~~~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          238 VC---------AVARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             EC---------CSCHHHHHHHHHTEEEEEEEEEC
T ss_pred             Ee---------ccCcchhheeheeecCCceEEEE
Confidence            31         12257888999999999998876

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=85.86  E-value=0.94  Score=39.78  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=57.2

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccc--cCCC-----CCCCccce
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC--EGFS-----TYPRTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~--e~l~-----~~p~sFDl  146 (235)
                      +.....+||-.||  |.|.+++.++. .+   ..|+.++.+ +.++.+.+.|....+ +..  +.+.     ..++.+|+
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G---a~V~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~D~  241 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMG---YRVLGIDGGEGKEELFRSIGGEVFI-DFTKEKDIVGAVLKATDGGAHG  241 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECSTTHHHHHHHTTCCEEE-ETTTCSCHHHHHHHHHTSCEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCC---CcEEEEcCCHHHHHHHHHcCCceEE-ecCccHhHHHHHHHHhCCCCCE
Confidence            3345679999999  56777666665 44   367777766 677777665542111 111  1110     00125888


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+.+..         ....+.+..+.|+|||.+++.
T Consensus       242 vi~~~g---------~~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          242 VINVSV---------SEAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             EEECSS---------CHHHHHHHTTSEEEEEEEEEC
T ss_pred             EEECCC---------cHHHHHHHHHHHhcCCEEEEE
Confidence            875221         246889999999999999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.70  E-value=0.77  Score=40.54  Aligned_cols=95  Identities=14%  Similarity=-0.035  Sum_probs=56.6

Q ss_pred             hCCCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccc-ccc-------ccccCCC--CCCCc
Q 026623           77 IGTRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIG-IYH-------DWCEGFS--TYPRT  143 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~-------~~~e~l~--~~p~s  143 (235)
                      .+.....+||=.|||. |.++..|++. +.  ..|+.+|.+ +.++.+.+.+-.. .+.       ++.+.+-  +..+.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g  252 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAGA--CPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIE  252 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTTC--CSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCC
Confidence            3444567899899865 6677777653 32  126777777 7777766542100 111       1111110  12367


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ||+|+-..         .-...+.+..+.|||||.+++.
T Consensus       253 ~Dvvid~~---------g~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          253 PAVALECT---------GVESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CSEEEECS---------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECC---------CChHHHHHHHHHhcCCCEEEEE
Confidence            99987411         1245788999999999999986

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=85.16  E-value=1.3  Score=39.28  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             CCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCC--CCCCccceee
Q 026623           79 TRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFS--TYPRTYDLIH  148 (235)
Q Consensus        79 ~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~--~~p~sFDlV~  148 (235)
                      .....+||-.||  |.|.+++.++. .+   ..|+.++.+ +.++.+.+.|....+  .  ++.+.+.  +..+.+|+|+
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi  244 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII  244 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEE
Confidence            345678999997  55666666655 34   368888877 677776665642211  0  0000010  0124689887


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .+..          ...+.+..+.|||||.+++.
T Consensus       245 ~~~G----------~~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          245 EMLA----------NVNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             ESCH----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCC----------hHHHHHHHHhccCCCEEEEE
Confidence            5222          24677889999999999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=84.61  E-value=1.4  Score=38.59  Aligned_cols=92  Identities=9%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             CCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc---ccccCCC--CCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH---DWCEGFS--TYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~---~~~e~l~--~~p~sFDlV~a~~  151 (235)
                      ....+||=.|||. |.++..|++. +  ...|+.+|.+ +.++.+.+.|....+.   ++.+.+-  +..+.||+|+-. 
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g--~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~-  246 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVS--AARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF-  246 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC-
Confidence            3467899999875 6677777653 2  2468888888 8888888877533221   0001000  011368888641 


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                          .    .-...+.+..+.|||||.+++.
T Consensus       247 ----~----G~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          247 ----V----GAQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             ----S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ----C----CCHHHHHHHHHHHhcCCEEEEE
Confidence                1    1245889999999999999886

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=84.24  E-value=1.7  Score=37.90  Aligned_cols=94  Identities=15%  Similarity=0.095  Sum_probs=56.9

Q ss_pred             CCCCCceEeeeccccch-HHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC------CCCCccceee
Q 026623           78 GTRRYRNVMDMNAGLGG-FAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS------TYPRTYDLIH  148 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~-faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~------~~p~sFDlV~  148 (235)
                      +.....+||=.|||..+ ++..+++ .+.  ..++.+|.+ +.++.+.+-|....+...-+..+      +..+-+|+|+
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~--~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~  234 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLIL  234 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCC--cEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccc
Confidence            33456789999998755 4444444 342  246677777 77888888775333211001000      0125577775


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      -.         ..-...+.+..+.|||||.+++.
T Consensus       235 d~---------~G~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          235 ET---------AGVPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             EC---------SCSHHHHHHHHHHCCTTCEEEEC
T ss_pred             cc---------ccccchhhhhhheecCCeEEEEE
Confidence            31         12257788889999999999986

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=83.89  E-value=0.83  Score=40.13  Aligned_cols=92  Identities=12%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             CCCCCceEeeeccc--cchHHHHHhc-C-CCceeEEeecCcc-ccHHHHHHcCccccccccc-cC----CC-CCC-Cccc
Q 026623           78 GTRRYRNVMDMNAG--LGGFAAALES-P-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC-EG----FS-TYP-RTYD  145 (235)
Q Consensus        78 ~~~~~r~VLD~GCG--~G~faa~L~~-~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~-e~----l~-~~p-~sFD  145 (235)
                      +.....+||-.|+|  .|.+++.++. . +   .+|+.+|.+ +.++.+.+.|....+ +.. +.    +. ... +.+|
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G---a~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~d  242 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGVDVREEAVEAAKRAGADYVI-NASMQDPLAEIRRITESKGVD  242 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTC---CEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHHHHhCCCEEe-cCCCccHHHHHHHHhcCCCce
Confidence            33456799999998  5556666554 3 4   358888877 777777665632211 100 11    00 011 4789


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +|+.+.         .-...+.+..+.|||||.+++.
T Consensus       243 ~vi~~~---------g~~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          243 AVIDLN---------NSEKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             EEEESC---------CCHHHHTTGGGGEEEEEEEEEC
T ss_pred             EEEECC---------CCHHHHHHHHHHHhcCCEEEEE
Confidence            887521         1245788899999999999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=83.87  E-value=0.79  Score=40.23  Aligned_cols=90  Identities=14%  Similarity=0.083  Sum_probs=56.0

Q ss_pred             CCCCceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccccccc-----CCC--CCCCcccee
Q 026623           79 TRRYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE-----GFS--TYPRTYDLI  147 (235)
Q Consensus        79 ~~~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e-----~l~--~~p~sFDlV  147 (235)
                      .....+||-.|+  |.|.+++.++. .+   .+|+.++.+ +.++.+.+.|....+ +..+     .+.  +..+.+|+|
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G---~~Vi~~~~~~~~~~~~~~~ga~~~~-d~~~~~~~~~~~~~~~~~~~d~v  239 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFG---ARVIATAGSEDKLRRAKALGADETV-NYTHPDWPKEVRRLTGGKGADKV  239 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHTCSEEE-ETTSTTHHHHHHHHTTTTCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHhcCCCEEE-cCCcccHHHHHHHHhCCCCceEE
Confidence            345679999998  56777777765 34   367788876 777777665532211 1111     010  112479998


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.+..          ...+.+..+.|||||.+++.
T Consensus       240 i~~~g----------~~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          240 VDHTG----------ALYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             EESSC----------SSSHHHHHHHEEEEEEEEES
T ss_pred             EECCC----------HHHHHHHHHhhccCCEEEEE
Confidence            75332          13567788999999998875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=83.62  E-value=0.95  Score=43.64  Aligned_cols=58  Identities=19%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             CccceeeehhhhccCCCCCC-hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623          142 RTYDLIHANGVFSLYENTCK-PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~-~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      ..||+++... |+--.+..- -..++.+|.|.+||||.+.......   .+++.+..-...+.
T Consensus       178 ~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~~---~vr~~L~~aGf~v~  236 (676)
T 3ps9_A          178 QKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG---FVRRGLQDAGFTMQ  236 (676)
T ss_dssp             TCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCCH---HHHHHHHHHTCEEE
T ss_pred             CcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCcH---HHHHHHHhCCeEEE
Confidence            6799987633 442111110 1589999999999999987665443   33444444444444

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=83.36  E-value=2.8  Score=37.07  Aligned_cols=99  Identities=15%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcCc--cc-------cc-cccccCC--CCCC-Ccc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERGL--IG-------IY-HDWCEGF--STYP-RTY  144 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rgl--~~-------~~-~~~~e~l--~~~p-~sF  144 (235)
                      .+.|+++|||.=..+-.|....  ...+.-+|.+..+..    ..+.|.  ..       .+ .+|.+.+  ..++ +.-
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~--~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPT--GTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCT--TCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CCeEEEeCCCCCchhhhccCCC--CcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence            6789999999999877776322  246888888766653    211110  01       11 1232222  1233 444


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      =++++..+|+|++. .+...+|..+...+-||+++++.-
T Consensus       181 t~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~  218 (310)
T 2uyo_A          181 TAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVET  218 (310)
T ss_dssp             EEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEe
Confidence            47888999999864 467789999999889999999984

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=82.76  E-value=6.1  Score=34.65  Aligned_cols=137  Identities=14%  Similarity=0.175  Sum_probs=72.5

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc--cccccccCCCC--CC--Cccceeeeh---
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG--IYHDWCEGFST--YP--RTYDLIHAN---  150 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~--~~~~~~e~l~~--~p--~sFDlV~a~---  150 (235)
                      ...+|+|+=||.|++...|...+.-+..|..+|.. ..... ++.-..+  .+..+...+..  .+  ..+|++++.   
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~t-y~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPC   93 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITV-GMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPC   93 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHH-HHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEECCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHH-HHHhCCCCceeCCChHHccHHHhcccCCcCEEEecCCC
Confidence            45689999999999999998876433235788876 33332 2221111  11111122221  11  368999974   


Q ss_pred             hhhccCC-CC---CC-hHHHHHHHhhhh---cCC-cE----EEEEeChH-H----HHHHHHHHhccCceeE-eecCCCCC
Q 026623          151 GVFSLYE-NT---CK-PEDILLEMDRIL---RPE-GA----VIFRDEVD-A----LNKVRKFAEGMRWDTK-MMDHEDGP  211 (235)
Q Consensus       151 ~vl~h~~-~~---~~-~~~~L~Em~RVL---RPG-G~----lii~d~~~-~----~~~i~~~~~~~~W~~~-~~~~~~~~  211 (235)
                      .-|+-.- .+   .+ -..++.|+.|++   ||- |.    +++-++.. +    -..+..+++. .|.+. ..+.  +|
T Consensus        94 Q~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~gl~~~~~~~~~~~l~~-~~~vl~a~~~--~P  170 (295)
T 2qrv_A           94 NDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLES-NPVMIDAKEV--SA  170 (295)
T ss_dssp             GGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEESSBCHHHHHHHHHHHTS-CCCCEEGGGT--SS
T ss_pred             ccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCcchhhcCccHHHHHHhc-CcEEeecceE--CC
Confidence            3343221 11   11 124555655555   775 31    45555432 1    1224445543 67654 3233  68


Q ss_pred             CCCceEEEEE
Q 026623          212 LMPEKILIAV  221 (235)
Q Consensus       212 ~~~e~~l~~~  221 (235)
                      +.+++++++.
T Consensus       171 Q~R~R~~i~~  180 (295)
T 2qrv_A          171 AHRARYFWGN  180 (295)
T ss_dssp             BCCEEEEEEC
T ss_pred             ccCcEEEEEE
Confidence            8999998864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=82.73  E-value=0.89  Score=39.98  Aligned_cols=90  Identities=16%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             CCceEeeec-cc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc---ccccCCC-CCCCccceeeehhh
Q 026623           81 RYRNVMDMN-AG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH---DWCEGFS-TYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~G-CG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~---~~~e~l~-~~p~sFDlV~a~~v  152 (235)
                      ...+||=.| +| .|.++..+++. +   ..|+.++.+ +.++.+.+-|....+.   ++.+.+- ...+.||+|+-.  
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~--  224 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYG---LRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCT--  224 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEES--
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEEC--
Confidence            467888884 44 45666666653 4   368888887 7888887777422211   1111110 123579988741  


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                             ..-...+.+..+.|||||.++..
T Consensus       225 -------~g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          225 -------FNTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             -------SCHHHHHHHHHHHEEEEEEEEES
T ss_pred             -------CCchHHHHHHHHHhccCCEEEEE
Confidence                   12346778999999999999754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=82.71  E-value=3.6  Score=36.96  Aligned_cols=94  Identities=16%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             CCCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceeee
Q 026623           79 TRRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIHA  149 (235)
Q Consensus        79 ~~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~a  149 (235)
                      .....+||=+|||. |.++..|++. +.  ..|+.+|.+ +.++.+.+-|....+.    ++.+.+-  +..+.||+|+-
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid  288 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGA--SKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLE  288 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence            34567888899864 5566666653 42  268888877 7888888777532221    0101110  11246999874


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhh----cCCcEEEEE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRIL----RPEGAVIFR  182 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVL----RPGG~lii~  182 (235)
                      ..        ......+..+.+.|    ||||.+++.
T Consensus       289 ~~--------g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          289 AT--------GVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CS--------SCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CC--------CCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            11        12223555555566    999999986

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=82.65  E-value=0.9  Score=39.52  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             CCCCCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCcccee
Q 026623           78 GTRRYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV  147 (235)
                      +.....+||=.|+  |.|.++..+++. +   .+|+.++.+ +.++.+.+.|....+.    ++.+.+-  +..+.+|+|
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvv  213 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALG---AKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVV  213 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEE
Confidence            3345678999983  456666666653 4   368888877 7788877766422211    0001000  122579998


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +-+..          ...+.+..+.|||||.+++.
T Consensus       214 id~~g----------~~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          214 YDGVG----------QDTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             EESSC----------GGGHHHHHTTEEEEEEEEEC
T ss_pred             EECCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            75221          14677888999999999986

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=82.45  E-value=3  Score=38.35  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHH-HHhhhhCCCCCceEeeeccccchHHHHHhcC----C--CceeEEeecCccccHHHHHHcCcccc-ccc
Q 026623           61 KLWKKHVNAYK-KMNSLIGTRRYRNVMDMNAGLGGFAAALESP----K--SWVMNVVPTTAKNTLGVIYERGLIGI-YHD  132 (235)
Q Consensus        61 ~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~----~--~~~~~V~~~D~s~~L~~~~~Rgl~~~-~~~  132 (235)
                      ..+...+..+. .....++....-+|+++|+|.|.+++.+.+.    +  .-...+.-++.|..|....+.-|-+. -..
T Consensus        59 ~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~  138 (387)
T 1zkd_A           59 QMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIH  138 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeE
Confidence            34455554432 2333344433457999999999998877531    1  01247888899866665444333221 234


Q ss_pred             cccCCCCCCCccceeeehhhhccCC
Q 026623          133 WCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus       133 ~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      |++.++..|...=+|++|-+|.-+|
T Consensus       139 W~~~l~~lp~~~~~viANE~fDAlP  163 (387)
T 1zkd_A          139 WHDSFEDVPEGPAVILANEYFDVLP  163 (387)
T ss_dssp             EESSGGGSCCSSEEEEEESSGGGSC
T ss_pred             EeCChhhcCCCCeEEEeccccccCc
Confidence            7666544443355778888886544

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=81.66  E-value=18  Score=32.63  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG  119 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~  119 (235)
                      .+|+|+-||.|+++..|...+.  -.+.++|.. ...+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~   38 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAIN   38 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHH
Confidence            3799999999999999987763  236688887 4444

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=81.37  E-value=1.8  Score=38.39  Aligned_cols=90  Identities=18%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             CCCceEeeec--cccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC-CCCCccceeeeh
Q 026623           80 RRYRNVMDMN--AGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS-TYPRTYDLIHAN  150 (235)
Q Consensus        80 ~~~r~VLD~G--CG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~-~~p~sFDlV~a~  150 (235)
                      ....+||=.|  .|.|.++..++.. +   ..|+.++.+ +.++.+.+.|....+.    ++.+.+. ...+.+|+|+-+
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G---a~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~  238 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAK---CHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYES  238 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEEC
Confidence            4467899999  3566677777653 4   368888877 7777777766422211    0001110 012468988742


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ..          ...+.+..+.|||||.+++.
T Consensus       239 ~g----------~~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          239 VG----------GAMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             SC----------THHHHHHHHHEEEEEEEEEC
T ss_pred             CC----------HHHHHHHHHHHhcCCEEEEE
Confidence            11          15788899999999998875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=80.11  E-value=2.6  Score=40.75  Aligned_cols=59  Identities=20%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             CccceeeehhhhccCCCCCC-hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEe
Q 026623          142 RTYDLIHANGVFSLYENTCK-PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~-~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~  204 (235)
                      ..||.++... |+--.+..- -..++.+|.|++||||.+.-.....   .+++-+..-...+..
T Consensus       170 ~~~da~flD~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~~---~vr~~l~~aGf~~~~  229 (689)
T 3pvc_A          170 NQVDAWFLDG-FAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAAG---FVRRGLQQAGFNVTK  229 (689)
T ss_dssp             TCEEEEEECS-SCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCCH---HHHHHHHHTTCEEEE
T ss_pred             CceeEEEECC-CCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCcH---HHHHHHHhCCeEEEe
Confidence            6788887643 431111111 1689999999999999987655443   334444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	3e-04

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 2/128 (1%)

Query: 56  YQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA- 114
           Y+   +  K  ++  +++      R  R V+D+  G G     L      V+ +      
Sbjct: 16  YRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEM 75

Query: 115 -KNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRIL 173
            +       ER L   +         +   +D +       +Y +      +  ++   L
Sbjct: 76  LRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL 135

Query: 174 RPEGAVIF 181
           +P G  I 
Sbjct: 136 KPGGVFIT 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.81
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.81
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.77
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.74
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.74
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.72
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.7
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.7
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.68
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.68
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.67
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.66
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.66
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.66
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.6
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.56
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.54
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.52
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.5
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.47
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.47
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.45
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.44
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.41
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.41
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.4
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.36
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.35
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.35
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.34
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.28
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.23
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.23
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.22
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.21
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.2
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.16
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.05
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.03
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.93
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.88
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.87
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.81
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.78
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.76
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.73
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.7
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.66
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.64
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.61
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.61
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.59
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.59
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.54
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.54
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.48
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.35
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.32
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.31
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.29
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.24
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.22
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.21
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.15
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.04
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.02
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.93
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.92
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.76
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.73
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.67
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.5
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.43
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.42
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.35
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.34
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.33
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.28
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.18
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.17
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.16
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.13
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.93
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.81
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.17
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.88
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.72
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.34
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.28
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.13
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.13
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.49
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.28
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.78
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	93.77
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.32
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	93.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.19
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.69
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.16
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.15
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.04
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.95
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.79
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.83
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.12
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.86
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.84
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	89.83
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.79
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.63
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	87.34
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.33
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.75
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	86.64
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	83.73
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	82.45

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.81  E-value=1.9e-20  Score=155.99  Aligned_cols=105  Identities=17%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFD  145 (235)
                      +++.++-.+..+|||+|||+|.++..|++.+   .+|+++|.| +|+..+.++    |+  +..++..++.+|+.+++||
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            3443444456799999999999999999875   369999999 999887554    43  3355677788996679999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|..+|+|++   +++.+|.|+.|+|||||+++|.+
T Consensus        84 ~v~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          84 IVTCRIAAHHFP---NPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence            999999999996   78999999999999999999986

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.6e-20  Score=154.53  Aligned_cols=97  Identities=23%  Similarity=0.372  Sum_probs=85.2

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeee-hhhhccCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHA-NGVFSLYENT  159 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a-~~vl~h~~~~  159 (235)
                      ..+|||+|||+|.++..|++.+   ..|+++|.| .|++.+.+++....+...++.+|+.+++||+|+| ..+++|++  
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~--  117 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE--  117 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS--
T ss_pred             CCEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh--
Confidence            4589999999999999999875   379999999 9999999998766666667889976799999998 57899986  


Q ss_pred             CChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          160 CKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       160 ~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                       ++..+|+|+.|+|||||.++++..
T Consensus       118 -d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         118 -NKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -hHHHHHHHHHhhcCcCcEEEEEEC
Confidence             678999999999999999999863

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=3.2e-20  Score=156.41  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=86.9

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccce
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDL  146 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDl  146 (235)
                      ++.+...+..+|||+|||+|.++..|++++   .+|+++|.| +|++.|.++    |+  +..+...++.+|+.+++||+
T Consensus         9 ~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~   85 (234)
T d1xxla_           9 IKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   85 (234)
T ss_dssp             HHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence            344455557899999999999999999864   479999999 999877554    33  34456667889976799999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|..+|+|++   ++..+|+|+.|+|||||++++.+
T Consensus        86 v~~~~~l~~~~---d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          86 ITCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeceeeccc---CHHHHHHHHHHeeCCCcEEEEEE
Confidence            99999999986   78999999999999999999985

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.1e-19  Score=147.02  Aligned_cols=90  Identities=20%  Similarity=0.304  Sum_probs=79.3

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK  161 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~  161 (235)
                      .+|||+|||+|.++..|..       ++++|.| .|+..+.+|++ ..+.++++.+++.+++||+|+|+.+|+|++   +
T Consensus        38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d  106 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---D  106 (208)
T ss_dssp             SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---C
T ss_pred             CeEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---c
Confidence            4799999999999998863       5789999 99999998864 345666788997789999999999999996   6


Q ss_pred             hHHHHHHHhhhhcCCcEEEEEe
Q 026623          162 PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       162 ~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +..+|.|+.|+|||||.+++.+
T Consensus       107 ~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         107 PERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchhhhhhcCCCCceEEEEe
Confidence            8999999999999999999985

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.76  E-value=3.7e-19  Score=154.13  Aligned_cols=101  Identities=22%  Similarity=0.234  Sum_probs=84.0

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeee
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a  149 (235)
                      +..+..+|||+|||+|.++..|+++.  ..+|+++|.| .++..+.++    |+   +..++..++.+|+.+++||+|+|
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~  141 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS  141 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhc
Confidence            33456899999999999999998753  2479999999 888877665    44   33455666778877799999999


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ..+|+|++   ++..+|.|+.|+|||||+|++.+
T Consensus       142 ~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         142 QDAFLHSP---DKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhcc---CHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999996   67899999999999999999985

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=2.3e-19  Score=147.79  Aligned_cols=99  Identities=21%  Similarity=0.310  Sum_probs=82.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhcc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFSL  155 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h  155 (235)
                      ..+|||+|||+|.++..|++.+   .+|+++|.| +|+..+.++    +. +..+....+.+++.+++||+|+|..+|+|
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            4689999999999999999875   369999999 999988765    32 23345556778877799999999999999


Q ss_pred             CCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          156 YENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +++ .++..+|+|+.|+|||||.++|.+.
T Consensus       115 ~~~-~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         115 FEP-LELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            853 4688999999999999999999864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.2e-18  Score=147.75  Aligned_cols=104  Identities=12%  Similarity=0.183  Sum_probs=82.7

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFD  145 (235)
                      ...++-.+..+|||+|||+|.++..|++..  ...|+++|.| .|++.+.++    |+   +...+...+.+ +.+++||
T Consensus        26 ~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD  102 (245)
T d1nkva_          26 GRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCD  102 (245)
T ss_dssp             HHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEE
T ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCcee
Confidence            334444557899999999999999998753  1368999999 999877665    55   23444444555 3569999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+|..+++|++   ++..+|.|+.|+|||||++++.+
T Consensus       103 ~v~~~~~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         103 VAACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEEEehhhccC---CHHHHHHHHHHHcCcCcEEEEEe
Confidence            999999999996   67899999999999999999986

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.4e-18  Score=146.28  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=85.4

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCc
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRT  143 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~s  143 (235)
                      +..++......+..+|||+|||+|.++..|++++   .+|+++|.| +|+..+.++    ++ +..+....+.++ ++++
T Consensus        30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-~~~~  105 (251)
T d1wzna1          30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNE  105 (251)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSC
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehhhhhcc-cccc
Confidence            3444444455556799999999999999999876   379999999 999987776    33 334455567787 5589


Q ss_pred             cceeeeh-hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          144 YDLIHAN-GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       144 FDlV~a~-~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ||+|+|. .+|+|+ +..++..+|.+++|+|||||++++..
T Consensus       106 fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         106 FDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999986 678887 33467899999999999999999964

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.3e-18  Score=142.48  Aligned_cols=123  Identities=19%  Similarity=0.209  Sum_probs=95.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c--cccccccccCCCCCCCccceeeehhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L--IGIYHDWCEGFSTYPRTYDLIHANGV  152 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l--~~~~~~~~e~l~~~p~sFDlV~a~~v  152 (235)
                      ....+|||+|||+|.++..|+.+..  ..|+++|.| +|+..|.++-    .  +..++...+.+++.+++||+|+|..+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            4457899999999999999876543  379999999 9999887762    2  22345556778866799999999999


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH---------------HHHHHHHHHhccCceeEee
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD---------------ALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---------------~~~~i~~~~~~~~W~~~~~  205 (235)
                      |+|+++ .++..+|.++.|+|||||.+++.+...               ..+.+.++++.--+++...
T Consensus       137 l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~  203 (222)
T d2ex4a1         137 IGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  203 (222)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             cccchh-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence            999964 246789999999999999999985210               2466777877777776543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=9e-18  Score=140.57  Aligned_cols=102  Identities=10%  Similarity=0.113  Sum_probs=79.4

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCC-Cccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYP-RTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p-~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..|++. ..-..+|+++|.| +|++.|.++    +....++..+.....++ ..||+|+|+.++
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            3568999999999999888753 1113589999999 999998775    33333333333333344 899999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+ +..++..+|+||+|+|||||.+++.|
T Consensus       119 ~~~-~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         119 QFL-PPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             GGS-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence            998 44588999999999999999999986

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.70  E-value=5.2e-18  Score=146.25  Aligned_cols=129  Identities=13%  Similarity=0.095  Sum_probs=97.0

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..+......+|||+|||+|.++..|+.+..  .+|+++|.+ .|++.+.++-    .+..++...+.+++.+++||+|+
T Consensus        86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~  163 (254)
T d1xtpa_          86 IASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             HHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             HhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEE
Confidence            3445555677999999999999998876432  369999999 9999887762    23344555567886679999999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH----------------HHHHHHHHHhccCceeEee
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD----------------ALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~----------------~~~~i~~~~~~~~W~~~~~  205 (235)
                      |..+|+|+++ .++..+|.++.|+|||||+++|.++..                ....+++++++-.+++...
T Consensus       164 ~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~  235 (254)
T d1xtpa_         164 IQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             eeccccccch-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence            9999999964 356799999999999999999986321                1345667766666766543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.68  E-value=2.6e-17  Score=138.07  Aligned_cols=95  Identities=20%  Similarity=0.268  Sum_probs=79.1

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ..+|||+|||+|.++..|++.+   .+|+++|.| ++++.+.++.-  +..++...+.++ .+++||+|+|..+|+|++ 
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~-   95 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID-   95 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS-
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC-
Confidence            5589999999999999998875   369999999 89999887743  233444455555 469999999999999995 


Q ss_pred             CCChHHHHHHHh-hhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMD-RILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~-RVLRPGG~lii~d  183 (235)
                        ++..+|.|+. |+|||||.+++..
T Consensus        96 --d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          96 --DPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             --SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --CHHHHHHHHHHHhcCCCceEEEEe
Confidence              7899999997 8999999999984

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.68  E-value=3.4e-17  Score=138.36  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=79.3

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeeh-hhhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHAN-GVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~-~vl~  154 (235)
                      .++|||+|||+|.++..|++.+   .+|+++|.| +||+.|.+|    |+ +..++.....++ .+++||+|+|. .+|+
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLDSTN  113 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTTGGG
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCccceeeccchhhhc-ccccccccceeeeeee
Confidence            4689999999999999999876   379999999 999988775    33 233344344555 36899999985 6888


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+.+..++..+|+++.|.|||||.|++.-
T Consensus       114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            88766678899999999999999999853

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.3e-17  Score=141.86  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=77.3

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccC
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                      .....+|||+|||+|.++..|++... ...++++|.| .|+..+.++.. +......++.+|+.+++||+|++.++++| 
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-  159 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-  159 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH-
Confidence            34567999999999999999987632 2479999999 99999887753 33445567889977899999999777654 


Q ss_pred             CCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          157 ENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                               +.|+.|||||||.+++...
T Consensus       160 ---------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 ---------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ---------HHHHHHHEEEEEEEEEEEE
T ss_pred             ---------HHHHHHHhCCCcEEEEEee
Confidence                     5799999999999999974

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=6.7e-17  Score=141.72  Aligned_cols=114  Identities=12%  Similarity=0.111  Sum_probs=88.2

Q ss_pred             HHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCC
Q 026623           67 VNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYP  141 (235)
Q Consensus        67 v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p  141 (235)
                      .+.+..++..++..++.+|||+|||.|+++.+++++.  ..+|+++|.| +++..+.+|    |+...+.........++
T Consensus        38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~  115 (280)
T d2fk8a1          38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA  115 (280)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred             HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc
Confidence            3446667777777778999999999999999988752  1379999999 888876665    66443322223333356


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++||.|++..+|+|+.+ .+...+++++.|+|||||.++|.+
T Consensus       116 ~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         116 EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence            99999999999999954 367899999999999999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=2e-17  Score=132.56  Aligned_cols=103  Identities=8%  Similarity=0.001  Sum_probs=80.3

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------------------cccccccccCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------------------IGIYHDWCEGF  137 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------------------~~~~~~~~e~l  137 (235)
                      |...+..+|||+|||+|..+.+|+++|   .+|+++|.| +|+..+.++.-                  +..+.+....+
T Consensus        16 l~~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          16 LNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            444457899999999999999999886   369999999 99999887621                  11222333344


Q ss_pred             CCCC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          138 STYP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       138 ~~~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +.++ .+||+|++..+++|++. .+...++.+|.|+|||||.+++..
T Consensus        93 ~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          93 TARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             THHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEE
Confidence            4445 89999999999999853 356799999999999999988763

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=8.7e-17  Score=132.19  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=76.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCCCCCCccceeeehhhhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      ..+|||+|||+|.++.+|++++   ..|+++|.| .+++.+.++    |+..  ......+.++ ++++||+|+|..+|+
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT-FDGEYDFILSTVVMM  106 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC-CCCCEEEEEEESCGG
T ss_pred             CCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc-ccccccEEEEeeeee
Confidence            3489999999999999999886   369999999 899875543    4422  2222223334 469999999999999


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |++. .+..++|.++.|+|||||++++..
T Consensus       107 ~~~~-~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         107 FLEA-QTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             GSCT-THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9953 467899999999999999999974

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.66  E-value=9.9e-17  Score=139.55  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=80.2

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhh
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      .+..+|||+|||+|.++..|++.-.-...|+++|.| .++..+.++    ++ +...+...+.++ ++++||+|+|+.+|
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHAFL  104 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEESCG
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc-ccCCceEEEEehhh
Confidence            446799999999999999998742112479999999 899987665    32 223344456666 46789999999999


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +|++   ++..+|.++.|+|||||++++.|.
T Consensus       105 ~~~~---d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         105 LHMT---TPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence            9996   678999999999999999999863

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.66  E-value=3.7e-17  Score=139.36  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=79.0

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-------cccccccccCCCCC-CCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-------IGIYHDWCEGFSTY-PRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-------~~~~~~~~e~l~~~-p~sFDlV~a~~  151 (235)
                      +..+|||+|||+|+.+..+++.+.  .+|+|+|.| +|++.|.+|..       +..+...+...++. .++||+|+|..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            357999999999999989887653  479999999 99999887621       11233334445543 48999999999


Q ss_pred             hhccCCC-CCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFSLYEN-TCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      ++||+.+ ..++..+|.++.|+|||||+|+++..
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            9999743 23567899999999999999998753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.1e-16  Score=141.36  Aligned_cols=112  Identities=13%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             HHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCccccccccccCCCCCCC
Q 026623           69 AYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGLIGIYHDWCEGFSTYPR  142 (235)
Q Consensus        69 ~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~~~~~~e~l~~~p~  142 (235)
                      .+..++..++..++.+|||+|||.|+++.+++++ +   .+|+++++| +++..+.+    .|+...+...+...++.++
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g---~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~  125 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE  125 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCC
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC---cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccc
Confidence            3555666677777899999999999999999864 4   479999999 77776544    4765544333344565679


Q ss_pred             ccceeeehhhhccCCCC------CChHHHHHHHhhhhcCCcEEEEEe
Q 026623          143 TYDLIHANGVFSLYENT------CKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~------~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +||.|++-.+|+|+.+.      .+...++++++|+|||||.+++.+
T Consensus       126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            99999999999999753      346899999999999999999874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.9e-16  Score=130.84  Aligned_cols=122  Identities=8%  Similarity=0.006  Sum_probs=86.8

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cc-------------------------
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IG-------------------------  128 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~-------------------------  128 (235)
                      ....+|||+|||+|.++..++..+  ..+|+++|+| .|++.+.++--     ..                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            346789999999999987777654  4579999999 99998765410     00                         


Q ss_pred             -------ccccccc---CCCCCCCccceeeehhhhccCCC-CCChHHHHHHHhhhhcCCcEEEEEeChH-----------
Q 026623          129 -------IYHDWCE---GFSTYPRTYDLIHANGVFSLYEN-TCKPEDILLEMDRILRPEGAVIFRDEVD-----------  186 (235)
Q Consensus       129 -------~~~~~~e---~l~~~p~sFDlV~a~~vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~~~-----------  186 (235)
                             ...+...   ..++.+++||+|++..++||+.. ..++..++.+|.|+|||||++++.+...           
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~  207 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF  207 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence                   0000001   12333499999999999999853 2356789999999999999999985211           


Q ss_pred             -----HHHHHHHHHhccCceeE
Q 026623          187 -----ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       187 -----~~~~i~~~~~~~~W~~~  203 (235)
                           ..+.+++++++-.+.+.
T Consensus       208 ~~~~~~~~~~~~~l~~aGf~v~  229 (257)
T d2a14a1         208 SCVALEKGEVEQAVLDAGFDIE  229 (257)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEE
T ss_pred             cccCCCHHHHHHHHHHCCCEEE
Confidence                 25667778777777653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.3e-16  Score=137.07  Aligned_cols=103  Identities=15%  Similarity=0.247  Sum_probs=75.8

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----cccc-----c--cccc---cCCCCCC
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGI-----Y--HDWC---EGFSTYP  141 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~-----~--~~~~---e~l~~~p  141 (235)
                      ++.....+|||+|||+|.++..|++.+   .+|+++|.| +||..|.++.    ....     +  .++.   ..+| +.
T Consensus        52 l~~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  127 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AG  127 (292)
T ss_dssp             HHHTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CT
T ss_pred             hhhcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CC
Confidence            444446799999999999999999886   379999999 9999876642    2110     1  0110   1122 34


Q ss_pred             Cccceeeeh-hhhccCCCC----CChHHHHHHHhhhhcCCcEEEEEe
Q 026623          142 RTYDLIHAN-GVFSLYENT----CKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       142 ~sFDlV~a~-~vl~h~~~~----~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++||+|+|. .+|+|+++.    .++..+|+|+.|+|||||+||+..
T Consensus       128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            899999974 589998642    246689999999999999999964

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=2e-15  Score=132.81  Aligned_cols=111  Identities=15%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCCCcc
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p~sF  144 (235)
                      ...++..++..++.+|||+|||.|+++.++++..  ...|+++++| +++..+.+|    |+...+.-.+..+...|.+|
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            4445666777778999999999999999988752  2479999999 888866554    55443322223333456899


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |.|++-.+|+|+.+ .+...+++++.|+|||||.+++.+
T Consensus       129 D~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         129 DRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             SEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEE
Confidence            99999999999854 367899999999999999999864

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=3.1e-15  Score=123.06  Aligned_cols=139  Identities=14%  Similarity=0.147  Sum_probs=93.5

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccccCCCCCCCcc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWCEGFSTYPRTY  144 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~e~l~~~p~sF  144 (235)
                      ++.+...+..+|||+|||+|.++.+|++..   .+|+++|.+ .++..+.++    ++.    ...+..+.. +..+++|
T Consensus        45 i~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~f  120 (194)
T d1dusa_          45 VENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKY  120 (194)
T ss_dssp             HHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCE
T ss_pred             HHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCc
Confidence            444555567899999999999999998754   379999999 888877653    332    122222221 3345899


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK  222 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k  222 (235)
                      |+|+|+..+++..  ..++.++.++.|+|||||.+++.... .....+.+.++..-+.+......    .+=+||-++|
T Consensus       121 D~Ii~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K  193 (194)
T d1dusa_         121 NKIITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK  193 (194)
T ss_dssp             EEEEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred             eEEEEcccEEecc--hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence            9999999987643  13578999999999999998876432 22334455555555555433222    2446777776

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.4e-15  Score=127.60  Aligned_cols=99  Identities=12%  Similarity=0.132  Sum_probs=73.2

Q ss_pred             CceEeeeccccchHHHHHhcC-----CCceeEEeecCcc-ccHHHHHHcC-----ccccccccc----c------CCCCC
Q 026623           82 YRNVMDMNAGLGGFAAALESP-----KSWVMNVVPTTAK-NTLGVIYERG-----LIGIYHDWC----E------GFSTY  140 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-----~~~~~~V~~~D~s-~~L~~~~~Rg-----l~~~~~~~~----e------~l~~~  140 (235)
                      .-+|||+|||+|.++..|++.     +.....++++|.| .|+..+.++-     +.....+|.    +      ..+..
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            348999999999987776542     2234578999999 9999887751     111111110    1      12334


Q ss_pred             CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++||+|+|.++|+|++   ++..+|.++.|+|||||.++|..
T Consensus       121 ~~~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEEE
Confidence            59999999999999996   78999999999999999998874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.9e-15  Score=125.84  Aligned_cols=122  Identities=9%  Similarity=-0.012  Sum_probs=87.7

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----------------------ccccccc
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----------------------IGIYHDW  133 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----------------------~~~~~~~  133 (235)
                      +.....+|||+|||+|..+.+|+++|   .+|+++|+| .++..++++--                       +..+...
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d  118 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCS  118 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcc
Confidence            33456799999999999999999987   379999999 89887766521                       1111111


Q ss_pred             ccCCCC-CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC---------hH---HHHHHHHHHhccCc
Q 026623          134 CEGFST-YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE---------VD---ALNKVRKFAEGMRW  200 (235)
Q Consensus       134 ~e~l~~-~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~---------~~---~~~~i~~~~~~~~W  200 (235)
                      ...++. .+++||+|+...+|+|++ ..+.+.++.+|.|+|||||++++...         .+   .-++++++... .|
T Consensus       119 ~~~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~  196 (229)
T d2bzga1         119 IFDLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-IC  196 (229)
T ss_dssp             GGGGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TE
T ss_pred             hhhccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CC
Confidence            122333 349999999999999984 35678999999999999999877731         11   13456777655 47


Q ss_pred             eeEe
Q 026623          201 DTKM  204 (235)
Q Consensus       201 ~~~~  204 (235)
                      ++..
T Consensus       197 ~i~~  200 (229)
T d2bzga1         197 NIRC  200 (229)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.54  E-value=3.3e-15  Score=127.59  Aligned_cols=104  Identities=23%  Similarity=0.341  Sum_probs=77.3

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc----Cccc---cccccccCCCCCCCccceee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER----GLIG---IYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R----gl~~---~~~~~~e~l~~~p~sFDlV~  148 (235)
                      .+.....++|||+|||+|.++..|+++.. ...++.+|.++++..+.++    |+..   .++.  +.+...|.+||+|+
T Consensus        75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~--D~~~~~~~~~D~v~  151 (253)
T d1tw3a2          75 AYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG--DFFEPLPRKADAII  151 (253)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCSSCEEEEE
T ss_pred             hcCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccCHHHHHHHHHHHHHhhcccchhhccc--cchhhcccchhhee
Confidence            34456678999999999999999987532 2468888988777765543    5432   2221  12333457899999


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++++|||+++ .+...+|+++.|+|||||.++|.|
T Consensus       152 ~~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         152 LSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEe
Confidence            9999999853 345689999999999999999986

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.7e-15  Score=125.68  Aligned_cols=98  Identities=11%  Similarity=0.077  Sum_probs=71.3

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccc-cccccCC-CCCCCccceee----
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIY-HDWCEGF-STYPRTYDLIH----  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~-~~~~e~l-~~~p~sFDlV~----  148 (235)
                      .+.+|||+|||+|.++.++++.+  ..+++++|.+ .+++.+.++.-     +..+ .++.+.. ++.+++||+|+    
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            46799999999999999998875  3589999999 99998877642     1111 1111111 22247777776    


Q ss_pred             -ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          149 -ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       149 -a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                       +...++|+.   +.+.++.|+.|+|||||.|++.+
T Consensus       131 ~~~~~~~~~~---~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWHTH---QFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCBGGGTTTH---HHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccccccccc---CHHHHHHHHHHHcCCCcEEEEEe
Confidence             455556654   67899999999999999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.9e-15  Score=125.57  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=85.5

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--cccc-------------------------
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGI-------------------------  129 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~-------------------------  129 (235)
                      +.....+|||+|||+|.+...++...  ..+|+++|.| .|++.+.++-  -.+.                         
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            44457899999999998876555443  4589999999 9999775431  0000                         


Q ss_pred             ----------cccccc-----CCCCCCCccceeeehhhhccCC-CCCChHHHHHHHhhhhcCCcEEEEEeC---------
Q 026623          130 ----------YHDWCE-----GFSTYPRTYDLIHANGVFSLYE-NTCKPEDILLEMDRILRPEGAVIFRDE---------  184 (235)
Q Consensus       130 ----------~~~~~e-----~l~~~p~sFDlV~a~~vl~h~~-~~~~~~~~L~Em~RVLRPGG~lii~d~---------  184 (235)
                                ..|..+     ..++.+++||+|+|.+++||+. ++.++..+|+++.|+|||||+|++.+.         
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~  208 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG  208 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence                      011111     1223347899999999999984 444678999999999999999999841         


Q ss_pred             ------hH-HHHHHHHHHhccCceeE
Q 026623          185 ------VD-ALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       185 ------~~-~~~~i~~~~~~~~W~~~  203 (235)
                            .. ..+.++.+++.--.++.
T Consensus       209 ~~~~~~~~~t~e~v~~~l~~aGf~v~  234 (263)
T d2g72a1         209 EARLTVVPVSEEEVREALVRSGYKVR  234 (263)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             CcccccCCCCHHHHHHHHHHCCCeEE
Confidence                  01 24567777766666654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.47  E-value=2.3e-14  Score=123.14  Aligned_cols=106  Identities=21%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHH----cCcccccc-ccccCCCCCCCccceeeehh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE----RGLIGIYH-DWCEGFSTYPRTYDLIHANG  151 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~----Rgl~~~~~-~~~e~l~~~p~sFDlV~a~~  151 (235)
                      +.....++|||+|||+|.++.+|+++.. ...++.+|.++++..+.+    .|+...+. .-.+.+...|..||+|++.+
T Consensus        77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~  155 (256)
T d1qzza2          77 YDWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF  155 (256)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred             CCCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence            3445678999999999999999987521 357899999877765543    35432110 00122333557899999999


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +|||+++ .+...+|++++|+|||||.++|.|.
T Consensus       156 vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         156 VLLNWSD-EDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccccCc-HHHHHHHHHHHhhcCCcceeEEEEe
Confidence            9999853 3457899999999999999999873

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=3.9e-14  Score=122.58  Aligned_cols=115  Identities=19%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc-ccccccCCCCCCCccceeeehhhhc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI-YHDWCEGFSTYPRTYDLIHANGVFS  154 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~-~~~~~e~l~~~p~sFDlV~a~~vl~  154 (235)
                      +..+|||+|||+|.++.++++.+   ..|+++|.+ .++..+.++    |+... .+...+. .+..++||+|+|+.+.+
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred             ccCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence            35799999999999999988876   369999999 999977653    44221 2221111 12248999999986664


Q ss_pred             cCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEee
Q 026623          155 LYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMM  205 (235)
Q Consensus       155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~  205 (235)
                      +      +..++.++.|+|||||++++++-. +..+.+.+.++...|++...
T Consensus       196 ~------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         196 L------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             H------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             c------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence            3      468899999999999999998642 33566777788888876543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.45  E-value=2.6e-13  Score=113.79  Aligned_cols=141  Identities=14%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccccccccccCCCCCCCccceeee-h
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIGIYHDWCEGFSTYPRTYDLIHA-N  150 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~~~~~~e~l~~~p~sFDlV~a-~  150 (235)
                      |.-.++.+|||+|||+|+++.+|++.-. ...|+++|+| .|+..+.+    ++.+..+...++..+.++..||.+.+ .
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence            4555678999999999999999887411 2369999999 88886544    45555554444544455554444432 1


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh----------HHHHHHHHHHhccCceeE-eecCCCCCCCCceEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV----------DALNKVRKFAEGMRWDTK-MMDHEDGPLMPEKILI  219 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~----------~~~~~i~~~~~~~~W~~~-~~~~~~~~~~~e~~l~  219 (235)
                      +.+.|.   .+...+|.|+.|+|||||.+++.+..          .......+.++. .+++. ..+.  .|.+++-++|
T Consensus       131 ~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~-gf~i~E~i~L--~P~~~~H~~v  204 (209)
T d1nt2a_         131 QDIAQK---NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG-DFKIVKHGSL--MPYHRDHIFI  204 (209)
T ss_dssp             ECCCST---THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEEEC--TTTCTTEEEE
T ss_pred             ecccCh---hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcc--CCCccCcEEE
Confidence            234333   36789999999999999999998521          223332332222 34433 2222  2556777888


Q ss_pred             EEecc
Q 026623          220 AVKQY  224 (235)
Q Consensus       220 ~~k~~  224 (235)
                      .-+.|
T Consensus       205 ~~~r~  209 (209)
T d1nt2a_         205 HAYRF  209 (209)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            76654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=8.6e-14  Score=113.67  Aligned_cols=120  Identities=15%  Similarity=0.201  Sum_probs=88.3

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFD  145 (235)
                      +..+...+..+|||+|||+|.++.+|+...   ..|+++|.+ ++++.+.++    |+   +..++..+..+++...+||
T Consensus        26 l~~l~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HHhcCCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence            444666678899999999999999998763   369999999 999987664    44   2334444444554458999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCcee
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDT  202 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~  202 (235)
                      +|++....+      .+..++.++.+.|||||++++.... +....+.+.++...|..
T Consensus       103 ~v~~~~~~~------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         103 IAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             EEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEeCccc------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCe
Confidence            999876553      4578999999999999999998743 34445556666655543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.41  E-value=3.6e-13  Score=114.62  Aligned_cols=124  Identities=7%  Similarity=-0.016  Sum_probs=86.9

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccC-CCCCCCccceeee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEG-FSTYPRTYDLIHA  149 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~-l~~~p~sFDlV~a  149 (235)
                      .|...++.+|||+|||+|.++..|++... ...|+++|+| .|+..+.++    ..+..++..+.. .++.+.+||++++
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence            44556678999999999999999987521 2479999999 898876664    333333333332 3334478888877


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC----------hHHHHHHHHHHhccCceeE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE----------VDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~----------~~~~~~i~~~~~~~~W~~~  203 (235)
                      .+.++|.   .+.+.++.|+.|+|||||.++|.+.          .....++.+.+++-..++.
T Consensus       148 ~~~~~~~---~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv  208 (230)
T d1g8sa_         148 YEDVAQP---NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV  208 (230)
T ss_dssp             EECCCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred             eccccch---HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            7777665   3678999999999999999999841          1234455555666566654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=3e-13  Score=119.57  Aligned_cols=98  Identities=14%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHH----HcCc---cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIY----ERGL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~----~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..+++.+.  -.|+++|.+.++..+.    +.|+   +..++...+.+++.+++||+|++..++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            457999999999999988888763  3699999987665443    3454   334555667777666999999998888


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVI  180 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~li  180 (235)
                      +++.....++.++.+++|+|||||.++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            877666678999999999999999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=3.5e-13  Score=112.85  Aligned_cols=114  Identities=10%  Similarity=0.095  Sum_probs=79.2

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCcc--ccccccccCCC--CCCCccceeeehhhh
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGLI--GIYHDWCEGFS--TYPRTYDLIHANGVF  153 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl~--~~~~~~~e~l~--~~p~sFDlV~a~~vl  153 (235)
                      ..|||+|||+|.++..|+.... ..+++++|.+ .++..+.    +.|+.  ..++..+..+.  +.+++||.|++.+..
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            4799999999999999987532 3589999998 8877543    44652  23444334343  345999999987766


Q ss_pred             ccCCC-----CCChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHHHhc
Q 026623          154 SLYEN-----TCKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKFAEG  197 (235)
Q Consensus       154 ~h~~~-----~~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~~~~  197 (235)
                      .+...     +---..+|.++.|+|||||.|.|. |..++.+.+......
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~  159 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  159 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence            54321     101158999999999999999875 566666666555443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.5e-13  Score=116.33  Aligned_cols=114  Identities=14%  Similarity=0.104  Sum_probs=81.0

Q ss_pred             HHHHHHHhh-hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH---HHHHcCc---cccccccccCCC
Q 026623           67 VNAYKKMNS-LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG---VIYERGL---IGIYHDWCEGFS  138 (235)
Q Consensus        67 v~~y~~~l~-~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~---~~~~Rgl---~~~~~~~~e~l~  138 (235)
                      .+.|.+.+. .+...+..+|||+|||+|.++..+++.+.  ..|+++|.+ .+..   .+.+.++   +..++...+.++
T Consensus        20 ~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~   97 (311)
T d2fyta1          20 TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH   97 (311)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred             HHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc
Confidence            344555332 23333467899999999999998888763  469999999 4443   2333444   334555567777


Q ss_pred             CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          139 TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       139 ~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.++.||+|++..+.+++.....++.++..++|.|||||.++-.
T Consensus        98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1          98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            66699999999888877654444678888899999999998843

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=7.1e-13  Score=116.68  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=75.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcCc---cccccccccCCCCCCCccceeeehhhh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +..+|||+|||+|.++..+++.+.  ..|+++|.+++...    +...|+   +..++...+.+++.+++||+|++..+.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            457899999999999888887763  36899999844433    333455   334455556677666999999998887


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii  181 (235)
                      +++.+...++.++.+++|+|||||.++-
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            7776656789999999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=3e-13  Score=113.40  Aligned_cols=102  Identities=16%  Similarity=0.015  Sum_probs=72.7

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYD  145 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFD  145 (235)
                      +++.++..+..+|||+|||+|.+++.|++.-.-...|+++|.+ +++..+.++    ++.  ...+.......+.+++||
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD  146 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYD  146 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchh
Confidence            4555566667899999999999998887531112369999998 888877664    221  123333333443458999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+++.+++|++         .++.|.|||||.+++-.
T Consensus       147 ~I~~~~~~~~~p---------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         147 VIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred             hhhhhccHHHhH---------HHHHHhcCCCcEEEEEE
Confidence            999999998775         25678899999999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=1.3e-12  Score=109.26  Aligned_cols=121  Identities=13%  Similarity=0.137  Sum_probs=82.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc--cccccccccCCC-CCC-Cccceeeehhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL--IGIYHDWCEGFS-TYP-RTYDLIHANGV  152 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl--~~~~~~~~e~l~-~~p-~sFDlV~a~~v  152 (235)
                      ...|||+|||+|.++..|+.... ..+++++|.+ .++..+.+    .++  +..++..++.|. .++ .++|.|++.+-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            34799999999999999987522 3589999999 77776544    355  334455455454 344 99999987544


Q ss_pred             hc-----cCCCCCChHHHHHHHhhhhcCCcEEEE-EeChHHHHHHHHHHhccCceeE
Q 026623          153 FS-----LYENTCKPEDILLEMDRILRPEGAVIF-RDEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       153 l~-----h~~~~~~~~~~L~Em~RVLRPGG~lii-~d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      --     |...+---..+|.++.|+|||||.|+| +|..++.+.+........+...
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~  167 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  167 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence            32     211111126899999999999999988 5666666666555555555543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=5.5e-12  Score=107.15  Aligned_cols=140  Identities=10%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             hhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccccccccc---cCCCCCCCccc
Q 026623           75 SLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWC---EGFSTYPRTYD  145 (235)
Q Consensus        75 ~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~---e~l~~~p~sFD  145 (235)
                      ..+...++.+|||+|||+|.++..|++. +. ...|+++|.+ .++..+.++    +.+..+....   +.++.....+|
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence            3455567889999999999999999874 11 2469999999 888866554    3322222222   22233347889


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC----------hHHHHHHHHHHhccCceeE-eecCCCCCC-C
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE----------VDALNKVRKFAEGMRWDTK-MMDHEDGPL-M  213 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~----------~~~~~~i~~~~~~~~W~~~-~~~~~~~~~-~  213 (235)
                      +|++.  +.|.   .+...++.++.|+|||||.++|+..          ..+...++++.+. .++.. ..+.+  |. .
T Consensus       146 ~i~~d--~~~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~--p~~~  217 (227)
T d1g8aa_         146 VIFED--VAQP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE--PYEK  217 (227)
T ss_dssp             EEEEC--CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--TTSS
T ss_pred             EEEEE--cccc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC--CCCC
Confidence            88763  3332   3567899999999999999999731          2234455555443 55543 22222  22 2


Q ss_pred             CceEEEEEec
Q 026623          214 PEKILIAVKQ  223 (235)
Q Consensus       214 ~e~~l~~~k~  223 (235)
                      +--+++++|+
T Consensus       218 ~H~~vv~rK~  227 (227)
T d1g8aa_         218 DHALFVVRKT  227 (227)
T ss_dssp             SEEEEEEECC
T ss_pred             ceEEEEEEeC
Confidence            3356777774

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=1e-11  Score=107.94  Aligned_cols=102  Identities=12%  Similarity=0.018  Sum_probs=74.7

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc------Cc---cccccccccCCCCCCC
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER------GL---IGIYHDWCEGFSTYPR  142 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R------gl---~~~~~~~~e~l~~~p~  142 (235)
                      +..++-.++.+|||+|||+|.++.+|+.. +. ...|+.+|.+ ++++.|.++      +.   +...+......++.++
T Consensus        89 i~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp-~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~  167 (264)
T d1i9ga_          89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGP-AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG  167 (264)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred             HHHhCCCCCCEEEecCcCCcHHHHHHHHhhCC-CcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCC
Confidence            33455566889999999999999999863 11 2369999999 899887653      11   1123333344555569


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +||.|++     |++   ++..++.++.|+|||||.+++...
T Consensus       168 ~fDaV~l-----dlp---~P~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         168 SVDRAVL-----DML---APWEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             CEEEEEE-----ESS---CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CcceEEE-----ecC---CHHHHHHHHHhccCCCCEEEEEeC
Confidence            9999976     454   667999999999999999998753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.23  E-value=5.9e-12  Score=108.59  Aligned_cols=116  Identities=12%  Similarity=0.114  Sum_probs=76.8

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---ccccc-ccccCCCCCCCc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYH-DWCEGFSTYPRT  143 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~-~~~e~l~~~p~s  143 (235)
                      +..++-.++.+|||+|||+|.++.+|+.. +. ...|+++|.+ ++++.|.++    +.   +...+ |.++.  +.+++
T Consensus        78 i~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~~~  154 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQM  154 (250)
T ss_dssp             ---CCCCTTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCC
T ss_pred             HHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--cccce
Confidence            33455566789999999999999888763 11 2369999999 889887764    22   22222 22222  23589


Q ss_pred             cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCc
Q 026623          144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRW  200 (235)
Q Consensus       144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W  200 (235)
                      ||.|++     +++   ++..+|.++.|+|||||.+++.... +.+.++-..++.-.|
T Consensus       155 fD~V~l-----d~p---~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         155 YDAVIA-----DIP---DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             EEEEEE-----CCS---CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred             eeeeee-----cCC---chHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence            999986     233   5678999999999999999987542 333333333343344

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.1e-12  Score=107.44  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=69.7

Q ss_pred             HHhhhh--CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-------cccccccccCC
Q 026623           72 KMNSLI--GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-------IGIYHDWCEGF  137 (235)
Q Consensus        72 ~~l~~l--~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-------~~~~~~~~e~l  137 (235)
                      ++++.|  ...+..+|||+|||+|.+++.|+..-.-...|+++|.+ +++..+.++    ++       +...+..+...
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            344444  33457899999999999887776531012369999998 787766443    22       11223333333


Q ss_pred             CCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          138 STYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       138 ~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      ++..+.||+|+++.++++++         .++.+.|||||.+++-.
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip---------~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVP---------QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred             cchhhhhhhhhhhcchhhcC---------HHHHhhcCCCcEEEEEE
Confidence            43348999999999988764         35778999999999864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=2.1e-11  Score=105.74  Aligned_cols=119  Identities=12%  Similarity=0.067  Sum_probs=79.9

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccccc---cccccCCCCCCCccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIY---HDWCEGFSTYPRTYD  145 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~---~~~~e~l~~~p~sFD  145 (235)
                      +..++-.++.+|||+|||+|+++.+|+..-.-...|+++|.+ ++++.|.++    |+...+   +.... ..+....||
T Consensus        96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~-~~~~~~~~D  174 (266)
T d1o54a_          96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-EGFDEKDVD  174 (266)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG-GCCSCCSEE
T ss_pred             HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc-cccccccee
Confidence            344555668899999999999999997631112479999999 888876554    443222   21111 122337788


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHHhccCce
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFAEGMRWD  201 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~~~~~W~  201 (235)
                      .|+     .|++   ++..+|.++.|+|||||.+++... .+.+.++-+.++...|.
T Consensus       175 ~V~-----~d~p---~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         175 ALF-----LDVP---DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             EEE-----ECCS---CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             eeE-----ecCC---CHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence            775     3554   678999999999999999988653 34444544445555564

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-12  Score=114.89  Aligned_cols=105  Identities=11%  Similarity=0.031  Sum_probs=72.8

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc-----------Cc----ccccccccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER-----------GL----IGIYHDWCE  135 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R-----------gl----~~~~~~~~e  135 (235)
                      ++..++..+...|||+|||+|.++..++.. +  ...++|+|.+ .++..+.+.           |+    +...++...
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~--~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC--CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            444455555779999999999988777653 3  3479999999 887765442           11    334444445


Q ss_pred             CCCCCCCcc--ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          136 GFSTYPRTY--DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       136 ~l~~~p~sF--DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+++.+..|  |+|+++... |.+   ++...|.||.|+|||||.+|+.+
T Consensus       221 ~~~~~~~~~~advi~~~~~~-f~~---~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIANTSVIFVNNFA-FGP---EVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             SHHHHHHHHHCSEEEECCTT-TCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccCcceEEEEccee-cch---HHHHHHHHHHHhCCCCcEEEEec
Confidence            455333445  677765443 433   67899999999999999999875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1e-11  Score=113.93  Aligned_cols=124  Identities=9%  Similarity=0.055  Sum_probs=79.6

Q ss_pred             cccccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC
Q 026623           48 VEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG  125 (235)
Q Consensus        48 ~~g~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg  125 (235)
                      ...++.+.|-+-.-   ..+.+   ++..++-.+..+|||+|||+|.++..++.. +  +..++|+|.+ .++..|.++.
T Consensus       189 Y~~fs~~vYGEl~~---~~i~~---Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g--~~~v~GIDiS~~~i~~Ak~~~  260 (406)
T d1u2za_         189 YKAFSNYVYGELLP---NFLSD---VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQY  260 (406)
T ss_dssp             CCSSGGGCCCCBCH---HHHHH---HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCccccCCH---HHHHH---HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHH
Confidence            44567777754443   23333   344444455689999999999998888764 3  2469999999 8888876642


Q ss_pred             c------------ccc-ccccccCC---CCCC---CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          126 L------------IGI-YHDWCEGF---STYP---RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       126 l------------~~~-~~~~~e~l---~~~p---~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      -            .+. .......+   ++++   ..+|+|+++..+ |.   .++..+|.||.|+|||||.+|+++
T Consensus       261 ~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~-f~---~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         261 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FD---EDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CC---HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             HHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEeccc-Cc---hHHHHHHHHHHHhcCCCcEEEEec
Confidence            1            000 00000111   1112   456788876533 33   368899999999999999999876

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6e-11  Score=105.67  Aligned_cols=101  Identities=16%  Similarity=0.168  Sum_probs=66.6

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----C-------------ccccccccc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----G-------------LIGIYHDWC  134 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----g-------------l~~~~~~~~  134 (235)
                      +..++-.++.+|||+|||+|.++.+|+.. +. ...|+++|.+ +++..|.++    +             .+...|...
T Consensus        91 l~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~-~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di  169 (324)
T d2b25a1          91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  169 (324)
T ss_dssp             HHHHTCCTTCEEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHHhCCCCCCEEEEecccccHHHHHHHHHhCC-CcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence            33455566789999999999999999863 11 2369999999 888876653    1             111222222


Q ss_pred             cCCC-CC-CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          135 EGFS-TY-PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       135 e~l~-~~-p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +... .. +.+||.|+.     .++   ++..+|.++.|+|||||.+++--
T Consensus       170 ~~~~~~~~~~~fD~V~L-----D~p---~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         170 SGATEDIKSLTFDAVAL-----DML---NPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TCCC-------EEEEEE-----CSS---STTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhcccccCCCCcceEee-----cCc---CHHHHHHHHHHhccCCCEEEEEe
Confidence            2222 12 378999976     233   45579999999999999999864

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.03  E-value=1.1e-10  Score=98.91  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=68.0

Q ss_pred             HHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--Cc--cccccccccCCCCCC-Cccc
Q 026623           72 KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--GL--IGIYHDWCEGFSTYP-RTYD  145 (235)
Q Consensus        72 ~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--gl--~~~~~~~~e~l~~~p-~sFD  145 (235)
                      .++..+.-.+..+|||+|||+|.+++.|+...   ..|+++|.+ +.+..+.++  ..  +...+..... ...+ ..||
T Consensus        61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~-g~~~~~pfD  136 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTL-GYEEEKPYD  136 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGG-CCGGGCCEE
T ss_pred             HHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhh-cchhhhhHH
Confidence            35555555667899999999999999888753   468999998 666666554  11  2223322211 1123 7899


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .|+++..+++++         .++.+.|||||.+++-
T Consensus       137 ~Iiv~~a~~~ip---------~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTLL---------CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred             HHHhhcchhhhh---------HHHHHhcCCCCEEEEE
Confidence            999988887764         2345779999999985

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.93  E-value=1.5e-09  Score=89.04  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCCceEeeeccccch----HHHHHhc---CCCceeEEeecCcc-ccHHHHHHcCc---------cc--------------
Q 026623           80 RRYRNVMDMNAGLGG----FAAALES---PKSWVMNVVPTTAK-NTLGVIYERGL---------IG--------------  128 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~----faa~L~~---~~~~~~~V~~~D~s-~~L~~~~~Rgl---------~~--------------  128 (235)
                      .+..+|+++|||+|.    +|..|.+   ...|...|++.|++ ..|+.|.+ |.         ..              
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y~~~~~~~~~~~~~~~yf~~~~~~~  101 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIYRLSELKTLSPQQLQRYFMRGTGPH  101 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-CcccHHHHhhhhHHHHhhceeecCCCc
Confidence            345699999999996    4444443   22345679999999 88876643 21         00              


Q ss_pred             ----------------cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623          129 ----------------IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       129 ----------------~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                                      ..++..+..+...+.||+|+|-+||.++. .....+++..+.+.|+|||+|++...
T Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEecC
Confidence                            00111111111238999999999999984 33457999999999999999999854

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.2e-09  Score=93.29  Aligned_cols=132  Identities=17%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--cccc-cccccCCCCCCCccceeeeh--
Q 026623           82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIY-HDWCEGFSTYPRTYDLIHAN--  150 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~-~~~~e~l~~~p~sFDlV~a~--  150 (235)
                      ..+|||+|||+|-.+..|+.. +  ...|+++|.| ..+..+.+.    |+  +..+ .|+.+.++  .+.||+|+||  
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p--~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP  184 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP  184 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred             ccceeeeehhhhHHHHHHHhhCC--cceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC--CCceeEEEecch
Confidence            457999999999999888763 3  3479999999 888876543    33  2222 33333222  3799999996  


Q ss_pred             -----------hhhccCCCCC---------ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCce-eEe-ecCC
Q 026623          151 -----------GVFSLYENTC---------KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWD-TKM-MDHE  208 (235)
Q Consensus       151 -----------~vl~h~~~~~---------~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~-~~~-~~~~  208 (235)
                                 .++.|.+...         .+..++.+..+.|+|||.+++--.......+.++++.-.|. +.+ .|. 
T Consensus       185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl-  263 (274)
T d2b3ta1         185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY-  263 (274)
T ss_dssp             CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT-
T ss_pred             hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC-
Confidence                       1222322110         12478999999999999999964444456777888777785 332 232 


Q ss_pred             CCCCCCceEEEEE
Q 026623          209 DGPLMPEKILIAV  221 (235)
Q Consensus       209 ~~~~~~e~~l~~~  221 (235)
                         .+.++++++|
T Consensus       264 ---~g~~R~v~~r  273 (274)
T d2b3ta1         264 ---GDNERVTLGR  273 (274)
T ss_dssp             ---TSSEEEEEEE
T ss_pred             ---CCCceEEEEe
Confidence               2688999885

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=4.5e-10  Score=99.18  Aligned_cols=100  Identities=19%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--ccc----ccccCCCCCCCccceeee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYH----DWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~----~~~e~l~~~p~sFDlV~a  149 (235)
                      .+.+|||++||+|+|+.+++..   ...|+++|.+ .+++.+.+.    |+..  .++    ++.+.++...++||+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4679999999999999998753   4689999999 888876543    4421  121    112223334489999997


Q ss_pred             hhhhccCCCCCC-------hHHHHHHHhhhhcCCcEEEEEeC
Q 026623          150 NGVFSLYENTCK-------PEDILLEMDRILRPEGAVIFRDE  184 (235)
Q Consensus       150 ~~vl~h~~~~~~-------~~~~L~Em~RVLRPGG~lii~d~  184 (235)
                      +-=-... ...+       ...++..+.++|||||.++++.+
T Consensus       222 DpP~~~~-~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         222 DPPAFAK-GKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CCCCSCC-STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCcccc-chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            4211100 1112       24688899999999999999864

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.81  E-value=8.1e-10  Score=94.25  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcccc-ccccccCCCCCCCccceeeehhhhccCC
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGI-YHDWCEGFSTYPRTYDLIHANGVFSLYE  157 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~-~~~~~e~l~~~p~sFDlV~a~~vl~h~~  157 (235)
                      ....++|||+|||+|.++.+|+++.. .+.++..|.+..++.+....-+.. .+|..+.+   | ..|++++.++||+++
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~---p-~~D~~~l~~vLh~~~  153 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDLPQVIENAPPLSGIEHVGGDMFASV---P-QGDAMILKAVCHNWS  153 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTCC---C-CEEEEEEESSGGGSC
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecchhhhhccCCCCCeEEecCCccccc---c-cceEEEEehhhhhCC
Confidence            35678999999999999999987522 346788888755432111111111 12222322   3 459999999999985


Q ss_pred             CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          158 NTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       158 ~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      + .+...+|+.+++.|+|||.++|.|
T Consensus       154 d-e~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         154 D-EKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             H-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            3 456799999999999999999997

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.78  E-value=1.4e-09  Score=95.99  Aligned_cols=101  Identities=12%  Similarity=0.100  Sum_probs=68.0

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccccc---ccc----ccCCCCCCCccceeee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIY---HDW----CEGFSTYPRTYDLIHA  149 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~---~~~----~e~l~~~p~sFDlV~a  149 (235)
                      ..+|||++||+|+|+.+++..+.  ..|+++|.+ .++..+.+.    |+...+   +..    .+.++...++||+|++
T Consensus       146 g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            57999999999999999887763  379999999 888876553    442221   111    1112323489999997


Q ss_pred             hhhhccCCCCC-------ChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          150 NGVFSLYENTC-------KPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       150 ~~vl~h~~~~~-------~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +---.- +...       +...++....++|||||.++++.+.
T Consensus       224 DpP~~~-~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         224 DPPAFV-QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             CCCCSC-SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCcccc-CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            322110 0101       2346888899999999999998643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.76  E-value=9.9e-09  Score=90.60  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc----cccccc----cCCCCCCCccceee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG----IYHDWC----EGFSTYPRTYDLIH  148 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~----~~~~~~----e~l~~~p~sFDlV~  148 (235)
                      +++|||+.||+|+|+.+++..+  ...|+.+|.+ ..+..+.+.    |+-.    .+...+    +.+.-..+.||+|+
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            6799999999999998877655  3469999999 788865543    4421    122111    11111237899999


Q ss_pred             ehh-hhcc-CCCCC----ChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623          149 ANG-VFSL-YENTC----KPEDILLEMDRILRPEGAVIFRDEV  185 (235)
Q Consensus       149 a~~-vl~h-~~~~~----~~~~~L~Em~RVLRPGG~lii~d~~  185 (235)
                      +.= .|.. -....    +..+++....++|+|||.++++.+.
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            730 0100 00000    2346888889999999999998643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.73  E-value=6.1e-09  Score=87.70  Aligned_cols=95  Identities=14%  Similarity=0.051  Sum_probs=64.1

Q ss_pred             CCCceEeeeccccchHHHHHhcC----CC-ceeEEeecCcc-ccHHHHHHc---------C--ccccccccccCCCCCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESP----KS-WVMNVVPTTAK-NTLGVIYER---------G--LIGIYHDWCEGFSTYPR  142 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~----~~-~~~~V~~~D~s-~~L~~~~~R---------g--l~~~~~~~~e~l~~~p~  142 (235)
                      .+..+|||+|||+|.+++.|+..    ++ -...|+++|.. +.+..+.++         +  .+...+..+........
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~  158 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA  158 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence            45689999999999998888652    10 01258899988 666665443         1  12233333333222348


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .||.|+++..+.+++         ..+.+.|||||.+++--
T Consensus       159 ~fD~Iiv~~a~~~~p---------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         159 PYNAIHVGAAAPDTP---------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             SEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred             ceeeEEEEeechhch---------HHHHHhcCCCcEEEEEE
Confidence            999999999987665         13568999999999854

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=1.7e-08  Score=86.66  Aligned_cols=113  Identities=14%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      +.+|||+|||+|.|+..++.++.  ..|+++|.+ .+++.+.+.    |+   +..++.++..++ ..+.||.|+++.. 
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p-  183 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-  183 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC-
T ss_pred             ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC-
Confidence            57999999999999988887652  479999999 777765442    44   334455554444 2388999986421 


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-------hHHHHHHHHHHhccCceeEe
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE-------VDALNKVRKFAEGMRWDTKM  204 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-------~~~~~~i~~~~~~~~W~~~~  204 (235)
                            ..-..+|.+..++|||||++.+-+.       .+..+.+.++++...+++..
T Consensus       184 ------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         184 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ------CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence                  1235788899999999999866531       12345677777777776653

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=6.3e-08  Score=83.81  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cc-cccccCCCCCCCccceeeeh--
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IY-HDWCEGFSTYPRTYDLIHAN--  150 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~-~~~~e~l~~~p~sFDlV~a~--  150 (235)
                      ..+|||+|||+|-.+..++..+  ...|+++|.| ..+..+.+.    |+..   .. .+|.+.++...+.||+|+||  
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP  188 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  188 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             ccEEEEeeeeeehhhhhhhhcc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence            4589999999998888887655  3479999999 888876553    4322   12 23444444333799999996  


Q ss_pred             -----hhh----ccCCC------CCChHHHHHH-HhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCC
Q 026623          151 -----GVF----SLYEN------TCKPEDILLE-MDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMP  214 (235)
Q Consensus       151 -----~vl----~h~~~------~~~~~~~L~E-m~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~  214 (235)
                           ..+    -|.|.      ...+ .++++ +.+.|+|||++++--..+..+.++++++...|.   .|.    .+.
T Consensus       189 YI~~~~~l~~~~~~EP~~AL~gg~dGl-~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~~---kDl----~g~  260 (271)
T d1nv8a_         189 YVKSSAHLPKDVLFEPPEALFGGEDGL-DFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVFL---KDS----AGK  260 (271)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSC-HHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEEE---ECT----TSS
T ss_pred             ccCcccccceeeeeccccccccccchH-HHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCEE---ecc----CCC
Confidence                 111    12110      0011 12222 467899999998875555556777777766552   232    278


Q ss_pred             ceEEEEEec
Q 026623          215 EKILIAVKQ  223 (235)
Q Consensus       215 e~~l~~~k~  223 (235)
                      +++++++|+
T Consensus       261 ~R~~~~~k~  269 (271)
T d1nv8a_         261 YRFLLLNRR  269 (271)
T ss_dssp             EEEEEEECC
T ss_pred             cEEEEEEEc
Confidence            999999986

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.64  E-value=4.4e-09  Score=89.08  Aligned_cols=98  Identities=11%  Similarity=0.110  Sum_probs=70.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcc-ccccccccCCCCCCCccceeeehhhhccCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLI-GIYHDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ...++|||+|||+|.++.+|+++-. ...++..|.+..++.+....-+ ...+|..+.+|    ..|++...++||++++
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P----~ad~~~l~~vlh~~~d  154 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIP----KADAVFMKWICHDWSD  154 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCC----CCSCEECSSSSTTSCH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHhhhhcccCCceEEecccccccCC----CcceEEEEEEeecCCH
Confidence            3478999999999999999987522 3468889998665543332211 22344344444    2567777889987743


Q ss_pred             CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                       .+...+|+++.+.|+|||.++|.|
T Consensus       155 -~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         155 -EHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             -HHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             -HHHHHHHHHHHHhcCCCceEEEEE
Confidence             457899999999999999999986

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.61  E-value=6.5e-08  Score=80.09  Aligned_cols=94  Identities=16%  Similarity=0.058  Sum_probs=58.1

Q ss_pred             ccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cc
Q 026623           51 VTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IG  128 (235)
Q Consensus        51 ~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~  128 (235)
                      ..-|.|....+.=...+   + .+...+.-.+++|||+|||+|.++..+...+  ..+|+++|.+ .++..+.+.-- +.
T Consensus        22 ~~leQy~T~~~~a~~~~---~-~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~~~~   95 (197)
T d1ne2a_          22 NYLEQYPTDASTAAYFL---I-EIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVN   95 (197)
T ss_dssp             -----CCCCHHHHHHHH---H-HHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSE
T ss_pred             cccccCCCCHHHHHHHH---H-HHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcccccc
Confidence            34567777776522111   1 2223455567899999999999987777766  3479999999 88887766421 22


Q ss_pred             cccccccCCCCCCCccceeeehhhh
Q 026623          129 IYHDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus       129 ~~~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ...   ..+...++.||+|++|==|
T Consensus        96 ~~~---~D~~~l~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          96 FMV---ADVSEISGKYDTWIMNPPF  117 (197)
T ss_dssp             EEE---CCGGGCCCCEEEEEECCCC
T ss_pred             EEE---EehhhcCCcceEEEeCccc
Confidence            232   2233345899999997444

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.61  E-value=3.2e-07  Score=75.41  Aligned_cols=118  Identities=15%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCCCCCCccceeeeh
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFSTYPRTYDLIHAN  150 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~~~p~sFDlV~a~  150 (235)
                      ++.-.+.+|||+|||+|.++.+++.++.  ..|+++|.+ .++..+.+.    +.. ..+.   .....++..||+|+++
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~---~d~~~~~~~fD~Vi~n  116 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMN  116 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEEC
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEE---CchhhhCCcCcEEEEc
Confidence            4555678999999999999888777763  479999999 888877654    211 1111   1122246889999997


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--eChHHHHHHHHHHhccCceeE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR--DEVDALNKVRKFAEGMRWDTK  203 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d~~~~~~~i~~~~~~~~W~~~  203 (235)
                      -=+.......+.. .+.   +.+.+++.++..  ........++.+.+...|.+.
T Consensus       117 PP~~~~~~~~d~~-~l~---~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~  167 (201)
T d1wy7a1         117 PPFGSQRKHADRP-FLL---KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVT  167 (201)
T ss_dssp             CCCSSSSTTTTHH-HHH---HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             CccccccccccHH-HHH---HHHhhcccchhcccchHHHHHHHHHHHhhcCceEE
Confidence            6554332223322 222   233445554443  233445556777777777654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.59  E-value=1.5e-08  Score=84.94  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=66.3

Q ss_pred             HHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCC
Q 026623           71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPR  142 (235)
Q Consensus        71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~  142 (235)
                      ..+++.+...+..+|||+|||+|.+++-|+.. +   ..|+.+|.. +....+.++    |+.  ...+.....-.....
T Consensus        68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g---~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~  144 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  144 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhccCccceEEEecCCCChhHHHHHHhhC---ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence            34555566666789999999999999888764 2   247788887 555554443    432  223332222121238


Q ss_pred             ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .||.|++...+.+++     ..    +..-|||||.+++-
T Consensus       145 pfD~Iiv~~a~~~ip-----~~----l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         145 PYDVIIVTAGAPKIP-----EP----LIEQLKIGGKLIIP  175 (215)
T ss_dssp             CEEEEEECSBBSSCC-----HH----HHHTEEEEEEEEEE
T ss_pred             cceeEEeecccccCC-----HH----HHHhcCCCCEEEEE
Confidence            999999999998765     22    33469999999985

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=1.1e-08  Score=84.26  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=82.8

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccCCC----CCC-
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEGFS----TYP-  141 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~l~----~~p-  141 (235)
                      ++..+...+...|||++||+|+++.+++++-. ...|+++|.. .|+..+.++.-     +..++.....+.    .+. 
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~   93 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGI   93 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTC
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCC
Confidence            34445556678999999999999999987522 2579999999 99999887631     223343333322    233 


Q ss_pred             Cccceeeehhhhcc--C----CCCCChHHHHHHHhhhhcCCcEEEEEeChHHH-HHHHHHHh
Q 026623          142 RTYDLIHANGVFSL--Y----ENTCKPEDILLEMDRILRPEGAVIFRDEVDAL-NKVRKFAE  196 (235)
Q Consensus       142 ~sFDlV~a~~vl~h--~----~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~-~~i~~~~~  196 (235)
                      ++||.|.....++-  +    +........|.++.++|+|||.+++...+..- .-++++++
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~  155 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR  155 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence            89999987655531  1    11123468999999999999999988765432 23444444

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.54  E-value=1.3e-08  Score=80.10  Aligned_cols=98  Identities=15%  Similarity=0.196  Sum_probs=62.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccC-CCCCCCccceeeehh
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEG-FSTYPRTYDLIHANG  151 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~-l~~~p~sFDlV~a~~  151 (235)
                      .+.+|||+|||+|.++...+.++.  .+|+.+|.+ ++++.+.+.    ++   +..++..+.. +....+.||+|+++-
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP   91 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP   91 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence            467999999999999987776763  489999998 777755442    33   2223333332 233348999999842


Q ss_pred             hhccCCCCCChHHHHHHH--hhhhcCCcEEEEEeC
Q 026623          152 VFSLYENTCKPEDILLEM--DRILRPEGAVIFRDE  184 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em--~RVLRPGG~lii~d~  184 (235)
                      =+..    .....+|..+  .++|+|||.+++...
T Consensus        92 Py~~----~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          92 PYAK----ETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhcc----chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            1110    0123344333  478999999998643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.8e-07  Score=75.85  Aligned_cols=127  Identities=11%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCcc--ccc
Q 026623           60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLI--GIY  130 (235)
Q Consensus        60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~--~~~  130 (235)
                      .+.|.+++.+-...++.+..   .+|+|+|+|.|  |+..++....   .+++.+|.. .-..+    +.+-||.  ..+
T Consensus        47 ~~~~~rHi~DSl~~~~~~~~---~~ilDiGsGaG~PGi~laI~~p~---~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~  120 (207)
T d1jsxa_          47 NEMLVRHILDSIVVAPYLQG---ERFIDVGTGPGLPGIPLSIVRPE---AHFTLLDSLGKRVRFLRQVQHELKLENIEPV  120 (207)
T ss_dssp             -CHHHHHHHHHHHHGGGCCS---SEEEEETCTTTTTHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred             HHHHHHHhcchHhhhhhhcC---CceeeeeccCCceeeehhhhccc---ceEEEEecchHHHHHHHHHHHHcCCcceeee
Confidence            46676666653434555533   48999999999  5555554322   468888886 43332    3334663  456


Q ss_pred             cccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCcee
Q 026623          131 HDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDT  202 (235)
Q Consensus       131 ~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~  202 (235)
                      ++..|.+. ...+||+|+|       +...++..++.-+.+.|+|||.+++--.....++++.+-+  .|+.
T Consensus       121 ~~R~E~~~-~~~~fD~V~s-------RA~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~~--~~~~  182 (207)
T d1jsxa_         121 QSRVEEFP-SEPPFDGVIS-------RAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQV  182 (207)
T ss_dssp             ECCTTTSC-CCSCEEEEEC-------SCSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEE
T ss_pred             ccchhhhc-cccccceehh-------hhhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhhc--CCEE
Confidence            66677654 3478999987       3445788999999999999999999987665566655433  5554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.48  E-value=3.2e-08  Score=84.01  Aligned_cols=98  Identities=11%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccc-cccccCCCCCCCccceeeehhhhccCCC
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIY-HDWCEGFSTYPRTYDLIHANGVFSLYEN  158 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~-~~~~e~l~~~p~sFDlV~a~~vl~h~~~  158 (235)
                      ...++|||+|||+|.++.++.++.. ...++..|.++.++.+....-+..+ +|-.+    ....+|++++.++||++++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~----~~p~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDRPQVVENLSGSNNLTYVGGDMFT----SIPNADAVLLKYILHNWTD  153 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCBTTEEEEECCTTT----CCCCCSEEEEESCGGGSCH
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecCHHHHHhCcccCceEEEecCccc----CCCCCcEEEEEeecccCCh
Confidence            3467899999999999999987522 2478889987654432221112221 22112    1246899999999999853


Q ss_pred             CCChHHHHHHHhhhhcCC---cEEEEEe
Q 026623          159 TCKPEDILLEMDRILRPE---GAVIFRD  183 (235)
Q Consensus       159 ~~~~~~~L~Em~RVLRPG---G~lii~d  183 (235)
                       .+-..+|+.+.+.|+||   |.++|.|
T Consensus       154 -~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         154 -KDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             -HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             -HHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence             34578999999999999   7788875

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=1.7e-07  Score=75.20  Aligned_cols=96  Identities=14%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc-cccccccCC----CCCCCccceeeehh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG-IYHDWCEGF----STYPRTYDLIHANG  151 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~-~~~~~~e~l----~~~p~sFDlV~a~~  151 (235)
                      ..+|||+|||+|.++.+...++.   .++.+|.+ .+++.+.+.    |+.. .....++.+    ......||+|+++=
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            56899999999999988877763   57889999 788765432    3322 111111111    11237899998742


Q ss_pred             hhccCCCCCChHHHHHHH--hhhhcCCcEEEEEeCh
Q 026623          152 VFSLYENTCKPEDILLEM--DRILRPEGAVIFRDEV  185 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em--~RVLRPGG~lii~d~~  185 (235)
                      =+.     -+....+.++  ...|+|||.+++....
T Consensus       119 PY~-----~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         119 PYA-----MDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CTT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             ccc-----cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            111     1233445544  3589999999987544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=2.2e-06  Score=72.76  Aligned_cols=159  Identities=16%  Similarity=0.166  Sum_probs=99.8

Q ss_pred             cchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc-c---cHHH-HHHcCcc--c
Q 026623           58 EDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK-N---TLGV-IYERGLI--G  128 (235)
Q Consensus        58 ~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~---~L~~-~~~Rgl~--~  128 (235)
                      ...+.|.+++.+-..++..+......+|+|+|+|.|  |+..++....   .+++-+|.. .   .|.. +.+=||.  .
T Consensus        47 ~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~---~~v~Lves~~KK~~FL~~v~~~L~L~n~~  123 (239)
T d1xdza_          47 EKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEALQLENTT  123 (239)
T ss_dssp             SHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred             CHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCC---ccceeecchHHHHHHHHHHHHHhCCCCcE
Confidence            345777777765444455454334578999999999  5555554322   368888876 3   3332 3333663  3


Q ss_pred             cccccccCCCC---CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCcee
Q 026623          129 IYHDWCEGFST---YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDT  202 (235)
Q Consensus       129 ~~~~~~e~l~~---~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~  202 (235)
                      .+|...|.+..   +...||+|+|       +....+..++.=....|+|||.+++--....   ++..++..+.+.+++
T Consensus       124 i~~~R~E~~~~~~~~~~~~D~v~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~  196 (239)
T d1xdza_         124 FCHDRAETFGQRKDVRESYDIVTA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL  196 (239)
T ss_dssp             EEESCHHHHTTCTTTTTCEEEEEE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred             EEeehhhhccccccccccceEEEE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence            45766776653   3378999998       3335788999999999999999999975543   445555566777765


Q ss_pred             E---eecCCCCCCCCceEEEEEeccccC
Q 026623          203 K---MMDHEDGPLMPEKILIAVKQYWVG  227 (235)
Q Consensus       203 ~---~~~~~~~~~~~e~~l~~~k~~w~~  227 (235)
                      .   .+..+ .....-.+++.+|.--.|
T Consensus       197 ~~v~~~~lp-~~~~~r~lv~i~K~~~~p  223 (239)
T d1xdza_         197 ENIHSFKLP-IEESDRNIMVIRKIKNTP  223 (239)
T ss_dssp             EEEEEEECT-TTCCEEEEEEEEECSCCC
T ss_pred             EEEEEEeCC-CCCCCEEEEEEEECCCCC
Confidence            4   23222 121233577777654433

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-06  Score=73.49  Aligned_cols=129  Identities=14%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCc---ccccccc-ccCCC-----CCCCccc
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGL---IGIYHDW-CEGFS-----TYPRTYD  145 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl---~~~~~~~-~e~l~-----~~p~sFD  145 (235)
                      +.++||++|||+|.-+.+|+.. +. ...|+.+|.. +....+.+    -|+   +...+.. .+.++     ..+++||
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~-~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCC-CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            4679999999999988888763 21 2368888887 55554433    243   1112211 12222     1358999


Q ss_pred             eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh---------------HHHHH-HHHHHhccCceeEeecCCC
Q 026623          146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV---------------DALNK-VRKFAEGMRWDTKMMDHED  209 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~---------------~~~~~-i~~~~~~~~W~~~~~~~~~  209 (235)
                      +|+..    |  ++......+.++.+.|||||.+++.+..               ..+.+ .+.+.+.-+|.+...-   
T Consensus       138 ~ifiD----~--dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llP---  208 (219)
T d2avda1         138 VAVVD----A--DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP---  208 (219)
T ss_dssp             EEEEC----S--CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC---
T ss_pred             EEEEe----C--CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEee---
Confidence            99873    2  2345678899999999999999998631               11222 3344667788877542   


Q ss_pred             CCCCCceEEEEEe
Q 026623          210 GPLMPEKILIAVK  222 (235)
Q Consensus       210 ~~~~~e~~l~~~k  222 (235)
                         -.+.+++|+|
T Consensus       209 ---igdGl~ia~K  218 (219)
T d2avda1         209 ---LGDGLTLAFK  218 (219)
T ss_dssp             ---STTCEEEEEE
T ss_pred             ---cCCeeEEEEe
Confidence               2346999988

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.29  E-value=8e-07  Score=78.13  Aligned_cols=100  Identities=17%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc----ccccccc----CCCCCCCcccee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG----IYHDWCE----GFSTYPRTYDLI  147 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~----~~~~~~e----~l~~~p~sFDlV  147 (235)
                      +..+|||+.||+|+|+.+++..+   ..|+.+|.| .++..+.+.    |+..    .+++.+-    .+....+.||+|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            36799999999999999998876   369999999 888876653    4322    1221111    011123799999


Q ss_pred             eeh---hhhccC----CCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HAN---GVFSLY----ENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a~---~vl~h~----~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +++   +.-.--    .-..++..++..+.++|+|||.+++..
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            973   111100    000123456677889999999766553

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.24  E-value=1.1e-06  Score=70.91  Aligned_cols=143  Identities=15%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC-CCCccceeeehhhh
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST-YPRTYDLIHANGVF  153 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~-~p~sFDlV~a~~vl  153 (235)
                      .+......+|||.|||+|+|+.++.++..-..++.++|.. ..+..+..-   ...+.  ..+.. ....||+|+++--+
T Consensus        14 l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~---~~~~~--~~~~~~~~~~fd~ii~npP~   88 (223)
T d2ih2a1          14 LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA---EGILA--DFLLWEPGEAFDLILGNPPY   88 (223)
T ss_dssp             HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTE---EEEES--CGGGCCCSSCEEEEEECCCC
T ss_pred             hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccc---eeeee--ehhccccccccceecccCcc
Confidence            3444456799999999999988887532123468888887 433221110   11111  11222 23899999998665


Q ss_pred             ccCC-------------------------CCCCh-HHHHHHHhhhhcCCcEEEEEeChH-----HHHHHHHH-HhccCce
Q 026623          154 SLYE-------------------------NTCKP-EDILLEMDRILRPEGAVIFRDEVD-----ALNKVRKF-AEGMRWD  201 (235)
Q Consensus       154 ~h~~-------------------------~~~~~-~~~L~Em~RVLRPGG~lii~d~~~-----~~~~i~~~-~~~~~W~  201 (235)
                      ....                         ...++ ..++....+.|||||++++--+..     ....+++. ++..+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~  168 (223)
T d2ih2a1          89 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTS  168 (223)
T ss_dssp             CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEE
T ss_pred             ccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEE
Confidence            4221                         11122 255677889999999987764222     12344444 5554444


Q ss_pred             eEeecCC-CCCCCCceEEEEEec
Q 026623          202 TKMMDHE-DGPLMPEKILIAVKQ  223 (235)
Q Consensus       202 ~~~~~~~-~~~~~~e~~l~~~k~  223 (235)
                      +..+..- .+....-.+|+.+|+
T Consensus       169 i~~~~~~F~~~~v~t~i~~~~k~  191 (223)
T d2ih2a1         169 VYYLGEVFPQKKVSAVVIRFQKS  191 (223)
T ss_dssp             EEEEESCSTTCCCCEEEEEEESS
T ss_pred             EEcchhcCCCCCCcEEEEEEEeC
Confidence            4322111 122345567777764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.2e-08  Score=80.66  Aligned_cols=141  Identities=11%  Similarity=0.062  Sum_probs=74.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcccccccc---ccCCC-CCCCccceeeehhhhccC
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDW---CEGFS-TYPRTYDLIHANGVFSLY  156 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~---~e~l~-~~p~sFDlV~a~~vl~h~  156 (235)
                      +..+|||+||++|+|+.++.++-.....++++|...+-.+---.-+.+.+.+.   ..... .....||+|.|.....--
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s  101 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhc
Confidence            36799999999999999887631112357777775432110000001111000   00000 123679999998776321


Q ss_pred             --------CCCCChHHHHHHHhhhhcCCcEEEEE--eChHHHHHHHHHHhccCceeEeecCC-CCCCCCceEEEEEe
Q 026623          157 --------ENTCKPEDILLEMDRILRPEGAVIFR--DEVDALNKVRKFAEGMRWDTKMMDHE-DGPLMPEKILIAVK  222 (235)
Q Consensus       157 --------~~~~~~~~~L~Em~RVLRPGG~lii~--d~~~~~~~i~~~~~~~~W~~~~~~~~-~~~~~~e~~l~~~k  222 (235)
                              ..-.-...+|.=+.++|||||.|++-  +..+. ..+...++..==++.++... +-+...|.+|||+.
T Consensus       102 g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~-~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g  177 (180)
T d1ej0a_         102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF-DEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG  177 (180)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH-HHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred             ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccH-HHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence                    00001125566678999999999997  33222 22333333332233333222 12337899999974

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=3e-07  Score=76.39  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc---ccccccc-ccCCCC----CC-Cccce
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL---IGIYHDW-CEGFST----YP-RTYDL  146 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl---~~~~~~~-~e~l~~----~p-~sFDl  146 (235)
                      +.++||++|||+|..+..|+..-.-...|+.+|.+ +++..+.+    .|+   +..++.. .+.++.    ++ ++||+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            45799999999999988887631012368899988 77776543    354   2222222 122332    23 78999


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+..+--+.+    .....+.|..|.|||||.+++.|
T Consensus       136 ifiD~~~~~~----~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         136 VFLDHWKDRY----LPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             EEECSCGGGH----HHHHHHHHHTTCEEEEEEEEESC
T ss_pred             eeeccccccc----ccHHHHHHHhCccCCCcEEEEeC
Confidence            9975322211    12345788899999999877655

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.15  E-value=2.8e-06  Score=73.55  Aligned_cols=144  Identities=13%  Similarity=0.157  Sum_probs=84.8

Q ss_pred             CCCCCceEeeeccccchHHHHHhc----CCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCC-Cccce
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALES----PKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYP-RTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~----~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p-~sFDl  146 (235)
                      ......+|||.+||+|+|+.++.+    ......++.++|.+ .++..+...    +. ....+.  ..+...+ ..||+
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~  191 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ--DGLANLLVDPVDV  191 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES--CTTSCCCCCCEEE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcc--ccccccccccccc
Confidence            444567899999999999877743    33335679999998 666655433    22 112221  1222223 89999


Q ss_pred             eeehhhhccCC--------------CCCCh-HHHHHHHhhhhcCCcEEEEEeChH-----HHHHHHHHHhccCceeEeec
Q 026623          147 IHANGVFSLYE--------------NTCKP-EDILLEMDRILRPEGAVIFRDEVD-----ALNKVRKFAEGMRWDTKMMD  206 (235)
Q Consensus       147 V~a~~vl~h~~--------------~~~~~-~~~L~Em~RVLRPGG~lii~d~~~-----~~~~i~~~~~~~~W~~~~~~  206 (235)
                      |+++-=+....              ...+. ..++..+.+.|+|||.+++--+..     .-..+++.+..-++-..+.+
T Consensus       192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~  271 (328)
T d2f8la1         192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIK  271 (328)
T ss_dssp             EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEE
Confidence            99975443110              00111 246788999999999876654322     23456666555555444443


Q ss_pred             CCC----CCCCCceEEEEEec
Q 026623          207 HED----GPLMPEKILIAVKQ  223 (235)
Q Consensus       207 ~~~----~~~~~e~~l~~~k~  223 (235)
                      .+.    +...+--+|+.+|+
T Consensus       272 lp~~~F~~~~~~t~ilvl~K~  292 (328)
T d2f8la1         272 LPETLFKSEQARKSILILEKA  292 (328)
T ss_dssp             CCGGGSCC-CCCEEEEEEEEC
T ss_pred             CCccccCCCCCCeEEEEEECC
Confidence            332    22245568888885

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.3e-06  Score=68.92  Aligned_cols=96  Identities=9%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--ccccccc-ccCCCCCCCccceeeehhhh
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDW-CEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~-~e~l~~~p~sFDlV~a~~vl  153 (235)
                      ..+|||++||+|.++...+.+++  ..|+.+|.+ ..++.+.+.    +.  ...+... .+-+......||+|++.==+
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             hhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            45899999999999988777774  369999998 777755432    22  1111111 11223234899999984222


Q ss_pred             ccCCCCCChHHHHHHHh--hhhcCCcEEEEEe
Q 026623          154 SLYENTCKPEDILLEMD--RILRPEGAVIFRD  183 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~--RVLRPGG~lii~d  183 (235)
                      .    ....+.++.-+.  .+|+|+|.+++--
T Consensus       122 ~----~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         122 R----RGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             S----TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             c----cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            1    123455555554  4799999999853

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.2e-05  Score=67.97  Aligned_cols=118  Identities=11%  Similarity=0.035  Sum_probs=75.3

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccc---ccc-ccccCC-C----CCCCccc
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIG---IYH-DWCEGF-S----TYPRTYD  145 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~-~~~e~l-~----~~p~sFD  145 (235)
                      ...+|||+|||+|-.+..|+.+ +.|  +++++|++ .++..|.+-    ++..   ..+ ++.+.+ +    ...++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~--~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGW--YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCc--cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            4568999999999998888764 333  69999999 888876653    3321   111 111111 1    1236899


Q ss_pred             eeeehhhhccCCC----------------------C----------CChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHH
Q 026623          146 LIHANGVFSLYEN----------------------T----------CKPEDILLEMDRILRPEGAVIFRDEV-DALNKVR  192 (235)
Q Consensus       146 lV~a~~vl~h~~~----------------------~----------~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~  192 (235)
                      +|+||==+....+                      .          ..+.+++.|-.+.+++.|++..--.. +.+..|.
T Consensus       139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~  218 (250)
T d2h00a1         139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK  218 (250)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred             EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence            9999754432100                      0          01345678888899999998765543 4566677


Q ss_pred             HHHhccCc
Q 026623          193 KFAEGMRW  200 (235)
Q Consensus       193 ~~~~~~~W  200 (235)
                      ++++....
T Consensus       219 ~~L~~~g~  226 (250)
T d2h00a1         219 EELRIQGV  226 (250)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            77777665

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.93  E-value=1.2e-05  Score=70.23  Aligned_cols=144  Identities=12%  Similarity=0.069  Sum_probs=83.5

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc-----ccccccccc-CCCCCCCccc
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL-----IGIYHDWCE-GFSTYPRTYD  145 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl-----~~~~~~~~e-~l~~~p~sFD  145 (235)
                      ....++||.+|.|.|+.+.++.+.+. +.+|+.+++. +.++++.+.      +.     +..+++.+. -+...++.||
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            34578999999999999999987642 4578888888 777766543      11     111222111 1222458899


Q ss_pred             eeeehhhhccCCC--CCC--hHHHHHHHhhhhcCCcEEEEEe------ChHHHHHHHHHHhccCceeEeecC--CCCCCC
Q 026623          146 LIHANGVFSLYEN--TCK--PEDILLEMDRILRPEGAVIFRD------EVDALNKVRKFAEGMRWDTKMMDH--EDGPLM  213 (235)
Q Consensus       146 lV~a~~vl~h~~~--~~~--~~~~L~Em~RVLRPGG~lii~d------~~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~  213 (235)
                      +|+....=.+..+  ...  -..+++.+.|.|+|||.+++.-      ..++...+.+.+++.=-.+..+..  +.-+ .
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~-~  232 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFF-L  232 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGT-E
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcC-C
Confidence            9996432111000  001  1589999999999999999853      123445565555444444443321  1001 1


Q ss_pred             CceEEEEEecc
Q 026623          214 PEKILIAVKQY  224 (235)
Q Consensus       214 ~e~~l~~~k~~  224 (235)
                      .-.+++|.|..
T Consensus       233 ~w~f~~aS~~~  243 (312)
T d1uira_         233 NFGFLLASDAF  243 (312)
T ss_dssp             EEEEEEEESSS
T ss_pred             CCEeEEEeCCC
Confidence            24578888764

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.92  E-value=2.2e-06  Score=69.20  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---cccccccc-CCCC---CCCccceee
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCE-GFST---YPRTYDLIH  148 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e-~l~~---~p~sFDlV~  148 (235)
                      ...+|||+.||+|.++...+.+|+  ..|+.+|.+ .++..+.+.    +..   ..++..+. .+..   ....||+|+
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence            467999999999999998888874  479999998 777765442    322   12222211 1111   236899998


Q ss_pred             ehhhhccCCCCCChHHHHHHHh--hhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMD--RILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~--RVLRPGG~lii~  182 (235)
                      +.==+    ...+....|..+.  .+|+|+|++|+-
T Consensus       119 lDPPY----~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         119 LDPPY----AKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             ECCCG----GGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             echhh----hhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            73211    1124567777764  479999998874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.76  E-value=5.8e-05  Score=64.54  Aligned_cols=143  Identities=15%  Similarity=0.056  Sum_probs=79.9

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-c---------------cccccccccCCCCCC
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-L---------------IGIYHDWCEGFSTYP  141 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l---------------~~~~~~~~e~l~~~p  141 (235)
                      ..+.++||-+|+|.|+.+.++.+.+.  ..|+.+++. ..++++.+-- +               +..+++.+..+---.
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCC--ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            34578999999999999999888764  357777777 6666654311 1               011121111110014


Q ss_pred             CccceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCCCCCC-C
Q 026623          142 RTYDLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHEDGPL-M  213 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~~~~~-~  213 (235)
                      ++||+|+... +........  -..++..+.|.|+|||.++..-     ..+....+.+.+++.=-.+..+....-+. +
T Consensus       148 ~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~  226 (276)
T d1mjfa_         148 RGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYAS  226 (276)
T ss_dssp             CCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSS
T ss_pred             CCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCC
Confidence            7899999743 321110011  1588999999999999999863     12223333333333323444332211111 3


Q ss_pred             CceEEEEEecc
Q 026623          214 PEKILIAVKQY  224 (235)
Q Consensus       214 ~e~~l~~~k~~  224 (235)
                      ...+++|.|.-
T Consensus       227 ~w~f~~as~~~  237 (276)
T d1mjfa_         227 PWAFLVGVKGD  237 (276)
T ss_dssp             SEEEEEEEESS
T ss_pred             ceEEEEEeCCC
Confidence            45778887753

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.73  E-value=5.6e-05  Score=63.07  Aligned_cols=96  Identities=9%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCccc---cccccc-cCCCC------CCCcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGLIG---IYHDWC-EGFST------YPRTY  144 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl~~---~~~~~~-e~l~~------~p~sF  144 (235)
                      +.++||.+|+++|.-+..|+.. +. ...|+.+|.. +....+.+    -|+..   ..++.+ +.|+.      .+++|
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~-~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCC-CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4679999999999877777642 11 1357788877 54444332    35421   222211 12221      24789


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      |+|+...      +.......+..+.+.|||||.+|+.+
T Consensus       138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            9998742      23456788999999999999999985

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.67  E-value=0.00016  Score=61.47  Aligned_cols=132  Identities=14%  Similarity=0.089  Sum_probs=74.4

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-c--cHHH---HHHcCccccccccccCCC-CCCCccceeeehhhhc
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-N--TLGV---IYERGLIGIYHDWCEGFS-TYPRTYDLIHANGVFS  154 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~--~L~~---~~~Rgl~~~~~~~~e~l~-~~p~sFDlV~a~~vl~  154 (235)
                      ..+|+|+|||.|+++..++.+. -++.|.++++- +  +.+.   .+..+++... . -..+- ..+...|+|+|...-+
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~-~-~~dv~~l~~~~~D~vlcDm~es  143 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQ-S-GVDVFFIPPERCDTLLCDIGES  143 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEE-C-SCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccch-h-hhhHHhcCCCcCCEEEeeCCCC
Confidence            4589999999999999998764 25567766663 1  1110   0111111111 0 01111 2358899999976533


Q ss_pred             cCCCCCCh-----HHHHHHHhhhhcCCcEEEEEe----ChHHHHHHHHHHhccCce-eEeecCCCCCCCCceEEEE
Q 026623          155 LYENTCKP-----EDILLEMDRILRPEGAVIFRD----EVDALNKVRKFAEGMRWD-TKMMDHEDGPLMPEKILIA  220 (235)
Q Consensus       155 h~~~~~~~-----~~~L~Em~RVLRPGG~lii~d----~~~~~~~i~~~~~~~~W~-~~~~~~~~~~~~~e~~l~~  220 (235)
                       -+++ +.     ..+|.=+.+.|+|||.|++--    ..++++.++++-..+.=. ++.+.+-+.  ..|.++|+
T Consensus       144 -s~~~-~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~P~SRns--t~EmY~Vs  215 (257)
T d2p41a1         144 -SPNP-TVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNS--THEMYWVS  215 (257)
T ss_dssp             -CSSH-HHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTT--CCCEEEET
T ss_pred             -CCCc-hhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcCCCCccc--cceeEEee
Confidence             1110 11     155555668899999998874    345666666654443323 234432222  46888885

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.0013  Score=56.65  Aligned_cols=142  Identities=14%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--cccccccc-CCCC--
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCE-GFST--  139 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e-~l~~--  139 (235)
                      |..++..++.....+|||+-||+|.|+..|+++.   ..|++++.+ +.+..+.+.    |+.  ..++...+ .++.  
T Consensus       201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~  277 (358)
T d1uwva2         201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  277 (358)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh
Confidence            5555666666667899999999999999999864   468999998 777755432    432  12222222 2322  


Q ss_pred             -CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeE---eecCCCCCCCC
Q 026623          140 -YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTK---MMDHEDGPLMP  214 (235)
Q Consensus       140 -~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~---~~~~~~~~~~~  214 (235)
                       ....||+|+.    -  |.|.-...++.++.+ ++|.-.++||=++.. ..-++.+.+ -.|++.   ..|-=....+-
T Consensus       278 ~~~~~~d~vil----D--PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l~~i~~~D~FP~T~Hv  349 (358)
T d1uwva2         278 WAKNGFDKVLL----D--PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTGHL  349 (358)
T ss_dssp             GGTTCCSEEEE----C--CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEEEEEEEECCSTTSSCC
T ss_pred             hhhccCceEEe----C--CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeEEEEEecCCCCccE
Confidence             2377999875    1  344556677777776 489999999966554 444555433 346554   33333344466


Q ss_pred             ceEEEEEe
Q 026623          215 EKILIAVK  222 (235)
Q Consensus       215 e~~l~~~k  222 (235)
                      |-+.+-+|
T Consensus       350 E~v~~l~R  357 (358)
T d1uwva2         350 ESMVLFSR  357 (358)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            76665543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=0.0001  Score=59.41  Aligned_cols=126  Identities=14%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCC----CCC-Ccc
Q 026623           73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFS----TYP-RTY  144 (235)
Q Consensus        73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~----~~p-~sF  144 (235)
                      ++..|...+...++|..||.||.+.+|.++.   ..|+++|.- +++..+.++-.  ...+|..+..+.    .+. +.+
T Consensus        10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~v   86 (182)
T d1wg8a2          10 ALDLLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERV   86 (182)
T ss_dssp             HHHHHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCcc
Confidence            3444555567799999999999999999875   369999998 88877766422  233444433332    233 789


Q ss_pred             ceeeehhhhcc--CCCC----CChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCce
Q 026623          145 DLIHANGVFSL--YENT----CKPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWD  201 (235)
Q Consensus       145 DlV~a~~vl~h--~~~~----~~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~  201 (235)
                      |.|.....++-  +.+.    ..+...|.....+|+|||.+++...+.. -..++.+.+.-.++
T Consensus        87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          87 DGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK  150 (182)
T ss_dssp             EEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred             CEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence            99998766652  2110    0123567777899999999998876543 23455555554443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.42  E-value=0.00021  Score=62.34  Aligned_cols=144  Identities=15%  Similarity=0.129  Sum_probs=81.4

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-----------cccccc-cCCCCCCCccc
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-----------IYHDWC-EGFSTYPRTYD  145 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-----------~~~~~~-e~l~~~p~sFD  145 (235)
                      ....++||-+|-|.|+.+.++.+.+. +..|+.+++. +.++++.+- +..           .+++++ +-+...++.||
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~-~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKF-LPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD  181 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHH-CTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhh-chhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence            34578999999999999999998642 4578888887 666665542 110           111110 11112358899


Q ss_pred             eeeehhhhccCC-CCCChHHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecC--CCCCCCCceE
Q 026623          146 LIHANGVFSLYE-NTCKPEDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDH--EDGPLMPEKI  217 (235)
Q Consensus       146 lV~a~~vl~h~~-~~~~~~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e~~  217 (235)
                      +|+....-..-+ ..---..++..+.|+|+|||.++..-.     .+....+.+..++.=..+..+..  +.-+.+.-.+
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f  261 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGY  261 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEE
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCcccee
Confidence            999753321111 000114789999999999999999742     23344444444554344443322  1111123357


Q ss_pred             EEEEecc
Q 026623          218 LIAVKQY  224 (235)
Q Consensus       218 l~~~k~~  224 (235)
                      ++|.|..
T Consensus       262 ~~aSk~~  268 (312)
T d2b2ca1         262 LICAKNA  268 (312)
T ss_dssp             EEEESST
T ss_pred             eEEECCC
Confidence            8887753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00047  Score=58.78  Aligned_cols=107  Identities=16%  Similarity=0.243  Sum_probs=64.7

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccccccccccCCC---CCCCcccee
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIGIYHDWCEGFS---TYPRTYDLI  147 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~~~~~~e~l~---~~p~sFDlV  147 (235)
                      .+......+|||++||.|+=+.+|++... ...|++.|.+ ..+....+    -|+............   ..++.||.|
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEE
Confidence            35666788999999999997766665321 1358899987 55554333    254222111001111   134789999


Q ss_pred             ee------hhhhccCC------CCCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623          148 HA------NGVFSLYE------NTCKP-------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       148 ~a------~~vl~h~~------~~~~~-------~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .+      +.++..-+      +..++       .++|....+.|||||+++-++
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            96      33332211      11111       178888899999999999995

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=0.00052  Score=59.22  Aligned_cols=144  Identities=13%  Similarity=0.021  Sum_probs=80.4

Q ss_pred             CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccc-cCCCCCCCcccee
Q 026623           80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWC-EGFSTYPRTYDLI  147 (235)
Q Consensus        80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~-e~l~~~p~sFDlV  147 (235)
                      ...++||=+|.|.|+.+.++.+.+. +..|+.+|+. +.++++.+--      +    +..+++++ +-+...++.||+|
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            3478999999999999999988642 4567777777 6666654421      0    01111111 1122245889999


Q ss_pred             eehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEeecC--CCCCCCCceEE
Q 026623          148 HANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKMMDH--EDGPLMPEKIL  218 (235)
Q Consensus       148 ~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~~~~--~~~~~~~e~~l  218 (235)
                      ++...-......+.  -..++..+.|.|+|||.+++.-..     +....+.+.+++.=-.+..+..  ..-+.+.=.++
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~  246 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYT  246 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEE
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEE
Confidence            97533221100011  258999999999999999997422     2223333333333323332211  11111223688


Q ss_pred             EEEecc
Q 026623          219 IAVKQY  224 (235)
Q Consensus       219 ~~~k~~  224 (235)
                      +|.|..
T Consensus       247 ~aSk~~  252 (295)
T d1inla_         247 FASKGI  252 (295)
T ss_dssp             EEESSC
T ss_pred             EEeCCC
Confidence            888864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.33  E-value=0.0002  Score=62.05  Aligned_cols=107  Identities=17%  Similarity=0.190  Sum_probs=64.0

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcccc--ccccccCCCCCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIGI--YHDWCEGFSTYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~--~~~~~e~l~~~p~sFDlV~a  149 (235)
                      ++..++.+|||++||.|+=+..|+..-.-...+++.|.+ ..+....+    -|....  .++....++..+..||.|.+
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence            555667899999999998544454311002358888987 55554332    244332  33333334445689999986


Q ss_pred             h------hhhccCCC------CCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623          150 N------GVFSLYEN------TCKP-------EDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       150 ~------~vl~h~~~------~~~~-------~~~L~Em~RVLRPGG~lii~d  183 (235)
                      .      .++..-++      ..++       .++|....+.|||||++|-++
T Consensus       192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            2      23322110      0011       177888999999999999985

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.28  E-value=0.0005  Score=59.05  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=64.8

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----ccccc-ccccCCCCC-CCccc
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYH-DWCEGFSTY-PRTYD  145 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~-~~~e~l~~~-p~sFD  145 (235)
                      ....++||=+|-|.|+.+.++.+.+. +..|+.+|+. +.++++.+--      +    +..+. |-.+-+... .++||
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            34568999999999999999988642 3467778877 6666554421      1    11111 111112223 37999


Q ss_pred             eeeehhhhccC-C-CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLY-E-NTCKPEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~-~-~~~~~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|+... +.-. + ..---..+++.+.|+|+|||.+++.-
T Consensus       157 vIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         157 AVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            999732 2110 0 00001589999999999999999974

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.18  E-value=0.0016  Score=55.26  Aligned_cols=144  Identities=14%  Similarity=0.149  Sum_probs=81.9

Q ss_pred             CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-----Cc-----cccccccccC-CCCCCCccce
Q 026623           79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-----GL-----IGIYHDWCEG-FSTYPRTYDL  146 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-----gl-----~~~~~~~~e~-l~~~p~sFDl  146 (235)
                      ....++||-+|-|.|+.++.+.+.+. +..|+.+|+. +.++++.+-     +.     +..+.+.+-. +...++.||+
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            34468999999999999999988632 3467777776 666655432     11     1112211111 2223588999


Q ss_pred             eeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEeecCC--CCCCCCceE
Q 026623          147 IHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKMMDHE--DGPLMPEKI  217 (235)
Q Consensus       147 V~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~~~~~--~~~~~~e~~  217 (235)
                      |+....-..-+. ..  -..+++.+.|+|+|||.++..-.     .+....+.+.+++.=-.+..+...  .-+.+.-.+
T Consensus       152 Ii~D~~~p~~~~-~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f  230 (274)
T d1iy9a_         152 IMVDSTEPVGPA-VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF  230 (274)
T ss_dssp             EEESCSSCCSCC-CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred             EEEcCCCCCCcc-hhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEE
Confidence            997532211110 11  24889999999999999999742     223344444444433333333211  111123467


Q ss_pred             EEEEecc
Q 026623          218 LIAVKQY  224 (235)
Q Consensus       218 l~~~k~~  224 (235)
                      ++|.|+.
T Consensus       231 ~~aS~~~  237 (274)
T d1iy9a_         231 TIGSKKY  237 (274)
T ss_dssp             EEEESSC
T ss_pred             EEEcCCC
Confidence            7787764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0002  Score=61.60  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC------c----cccccccc-cCCCCCCCccc
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG------L----IGIYHDWC-EGFSTYPRTYD  145 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg------l----~~~~~~~~-e~l~~~p~sFD  145 (235)
                      .....++||=+|-|.|+.+..+.+.+. +..|+.+|+. +.++++.+--      +    +..+++++ +-+-..+++||
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD  153 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence            334568999999999999999998642 3567777777 6666654421      1    11112111 11222358999


Q ss_pred             eeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEe
Q 026623          146 LIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRD  183 (235)
Q Consensus       146 lV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d  183 (235)
                      +|++.. +.-......  -..+++.+.|.|+|||.+++.-
T Consensus       154 vIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         154 VIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            999853 321100001  1378999999999999999974

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.16  E-value=5e-05  Score=64.06  Aligned_cols=77  Identities=13%  Similarity=0.120  Sum_probs=53.5

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..++.....+||++|||+|.++..|++.+   ..|++++.. .+++...++-    .+..+++++..+++....++.|+
T Consensus        22 v~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv   98 (245)
T d1yuba_          22 IKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIV   98 (245)
T ss_dssp             HHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEE
T ss_pred             HHhcCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEe
Confidence            334555567899999999999999998875   368899888 6666554442    24456666666665557777777


Q ss_pred             ehhhh
Q 026623          149 ANGVF  153 (235)
Q Consensus       149 a~~vl  153 (235)
                      ++.=+
T Consensus        99 ~NLPY  103 (245)
T d1yuba_          99 GNIPY  103 (245)
T ss_dssp             EECCS
T ss_pred             eeeeh
Confidence            65544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.00027  Score=56.30  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cc--cccccCCCC--CCCccceeee
Q 026623           82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IY--HDWCEGFST--YPRTYDLIHA  149 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~--~~~~e~l~~--~p~sFDlV~a  149 (235)
                      ..+|||+-||+|.++.+-..+|+  ..|+-+|.+ ..+..+.+-    ++..   .+  .+..+.+..  ....||+|++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            45899999999999999988884  479999998 766654432    2211   11  111111221  2357999987


Q ss_pred             hhhhccCCCCCChHHHHHHHh--hhhcCCcEEEEEe
Q 026623          150 NGVFSLYENTCKPEDILLEMD--RILRPEGAVIFRD  183 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~--RVLRPGG~lii~d  183 (235)
                      .==+.    ....+.+|.-+.  .+|+|+|++++--
T Consensus       122 DPPY~----~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         122 DPPFH----FNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             chhHh----hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            21111    112344444443  5899999999853

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.93  E-value=0.0024  Score=56.77  Aligned_cols=145  Identities=17%  Similarity=0.125  Sum_probs=82.7

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC----CC--------ceeEEeecCcc-ccHHHHHH----cCcc----cccccccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP----KS--------WVMNVVPTTAK-NTLGVIYE----RGLI----GIYHDWCE  135 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~----~~--------~~~~V~~~D~s-~~L~~~~~----Rgl~----~~~~~~~e  135 (235)
                      +.+....+|+|-.||+|+|..+..++    ..        ...++.+.|.. .+..++.-    +|+.    ...+.  .
T Consensus       158 l~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~--d  235 (425)
T d2okca1         158 INPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCE--D  235 (425)
T ss_dssp             HCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEEC--C
T ss_pred             ccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecC--c
Confidence            34455789999999999997665431    10        01236777776 45444332    2321    11111  2


Q ss_pred             CCCCCC-CccceeeehhhhccCCC-------------CCCh-HHHHHHHhhhhcCCcEEEEEeChHH------HHHHHHH
Q 026623          136 GFSTYP-RTYDLIHANGVFSLYEN-------------TCKP-EDILLEMDRILRPEGAVIFRDEVDA------LNKVRKF  194 (235)
Q Consensus       136 ~l~~~p-~sFDlV~a~~vl~h~~~-------------~~~~-~~~L~Em~RVLRPGG~lii~d~~~~------~~~i~~~  194 (235)
                      .+...+ ..||+|+++==|.....             ..+. ..++.-+...|+|||.+++--+..+      -..+++.
T Consensus       236 ~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~  315 (425)
T d2okca1         236 SLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKR  315 (425)
T ss_dssp             TTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHH
T ss_pred             hhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHH
Confidence            233334 88999999766632110             0111 2588899999999998777643322      2355666


Q ss_pred             HhccCceeEeecCCCCCC----CCceEEEEEec
Q 026623          195 AEGMRWDTKMMDHEDGPL----MPEKILIAVKQ  223 (235)
Q Consensus       195 ~~~~~W~~~~~~~~~~~~----~~e~~l~~~k~  223 (235)
                      +-.-++-..+...+.+-+    .+--||+.+|+
T Consensus       316 Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~  348 (425)
T d2okca1         316 LLQDFNLHTILRLPTGIFYAQGVKANVLFFSKG  348 (425)
T ss_dssp             HHHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred             HHHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence            544455444444443222    45668888884

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.81  E-value=0.00083  Score=55.86  Aligned_cols=73  Identities=12%  Similarity=0.057  Sum_probs=47.0

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccccccccCCCCCCCccceee
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIYHDWCEGFSTYPRTYDLIH  148 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~~~~~e~l~~~p~sFDlV~  148 (235)
                      +..++.....+||++|||+|.++..|++.+   ..|++++.. ++.....++..    +..+++++-.+++.......|+
T Consensus        14 v~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv   90 (235)
T d1qama_          14 MTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIF   90 (235)
T ss_dssp             HTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEE
T ss_pred             HHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceee
Confidence            444555567899999999999999999875   368889888 66666665532    2344444434443333333444


Q ss_pred             e
Q 026623          149 A  149 (235)
Q Consensus       149 a  149 (235)
                      +
T Consensus        91 ~   91 (235)
T d1qama_          91 G   91 (235)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.52  E-value=0.0023  Score=53.12  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHh----cCCCceeEEeecCcc-ccHHH-HHHcCccccccccccC---CCCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALE----SPKSWVMNVVPTTAK-NTLGV-IYERGLIGIYHDWCEG---FSTY  140 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~----~~~~~~~~V~~~D~s-~~L~~-~~~Rgl~~~~~~~~e~---l~~~  140 (235)
                      |..++..+++   .+||.+|++.|+-+..++    ..+. ...++++|.. +.... .....-+..+...+..   +...
T Consensus        72 ~~eli~~~KP---k~ILEIGv~~GgS~~~~a~~l~~~~~-~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l  147 (232)
T d2bm8a1          72 YHDMLWELRP---RTIVELGVYNGGSLAWFRDLTKIMGI-DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL  147 (232)
T ss_dssp             HHHHHHHHCC---SEEEEECCTTSHHHHHHHHHHHHTTC-CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG
T ss_pred             HHHHHHHhCC---CEEEEECCCCchHHHHHHHHHHhcCC-CceEEecCcChhhhhhhhccccceeeeecccccHHHHHHH
Confidence            5555655654   489999999998554443    2221 2368888874 22211 1111112222222221   2212


Q ss_pred             -CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH
Q 026623          141 -PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD  186 (235)
Q Consensus       141 -p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~  186 (235)
                       ...||+|+.... |+.    +.+..-.+....|+|||++|+-|...
T Consensus       148 ~~~~~dlIfID~~-H~~----~~v~~~~~~~~lLk~GG~iIveD~i~  189 (232)
T d2bm8a1         148 REMAHPLIFIDNA-HAN----TFNIMKWAVDHLLEEGDYFIIEDMIP  189 (232)
T ss_dssp             SSSCSSEEEEESS-CSS----HHHHHHHHHHHTCCTTCEEEECSCHH
T ss_pred             HhcCCCEEEEcCC-cch----HHHHHHHHHhcccCcCCEEEEEcCCc
Confidence             257899887554 332    11222225678999999999999754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.46  E-value=0.0011  Score=53.30  Aligned_cols=103  Identities=17%  Similarity=0.033  Sum_probs=64.6

Q ss_pred             CCCCCceEeeeccccch-HHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC------CCCCccceee
Q 026623           78 GTRRYRNVMDMNAGLGG-FAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS------TYPRTYDLIH  148 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~-faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~------~~p~sFDlV~  148 (235)
                      +-....+||-+|||..+ +++.+++ .+  ...|+.+|.+ +.++.+.+.|....+..-.+.+.      +-..-+|+++
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g--a~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhc--ccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence            33456799999999955 5555553 34  3468888888 88999999886443311111110      1235678877


Q ss_pred             ehhhhc------cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFS------LYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~------h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      -...+.      +..........|.++-+++||||.+++.
T Consensus       100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2         100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            432211      1111112357999999999999999887

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.17  E-value=0.008  Score=45.94  Aligned_cols=95  Identities=18%  Similarity=0.072  Sum_probs=60.8

Q ss_pred             hCCCCCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccc-ccc--------cCCC-CCCCcc
Q 026623           77 IGTRRYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYH-DWC--------EGFS-TYPRTY  144 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~-~~~--------e~l~-~~p~sF  144 (235)
                      .+.....+||=+|||. |.++..+++..  ..+|+.+|.+ +.++.+.+.|....+. +-.        +.+. ...+.+
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence            3444567899999995 44555555432  2378899988 8888888877533221 100        0010 123568


Q ss_pred             ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+|+-         -..-...+.+..+.|||||.+++.
T Consensus       100 D~vid---------~~g~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2         100 NVTID---------CSGNEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SEEEE---------CSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceeee---------cCCChHHHHHHHHHHhcCCceEEE
Confidence            88863         112357889999999999999987

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.011  Score=50.16  Aligned_cols=71  Identities=14%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcC--CCceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCCCC-C--Ccc
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFSTY-P--RTY  144 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~~~-p--~sF  144 (235)
                      +....+.+|||++||.|+=+.+|++.  +  ...|+++|.+ ..+..+.++    |+..  ..+.....++.. +  +.|
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~--~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f  167 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKN--QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV  167 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcC--CceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence            45556788999999999966666542  2  1258899987 555543332    4422  223322333322 2  679


Q ss_pred             ceeee
Q 026623          145 DLIHA  149 (235)
Q Consensus       145 DlV~a  149 (235)
                      |.|.+
T Consensus       168 D~VL~  172 (293)
T d2b9ea1         168 HYILL  172 (293)
T ss_dssp             EEEEE
T ss_pred             eEEee
Confidence            99986

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.014  Score=53.10  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=80.3

Q ss_pred             hhCCCCCceEeeeccccchHHHHHhc----CCC-------------ceeEEeecCcc-ccHHHHHH----cCccc-cccc
Q 026623           76 LIGTRRYRNVMDMNAGLGGFAAALES----PKS-------------WVMNVVPTTAK-NTLGVIYE----RGLIG-IYHD  132 (235)
Q Consensus        76 ~l~~~~~r~VLD~GCG~G~faa~L~~----~~~-------------~~~~V~~~D~s-~~L~~~~~----Rgl~~-~~~~  132 (235)
                      .+.+....+|+|-.||+|+|..+..+    ...             ...++.+.|.. .+..++.-    +|... ..+.
T Consensus       159 ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~  238 (524)
T d2ar0a1         159 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG  238 (524)
T ss_dssp             HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT
T ss_pred             cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccccccc
Confidence            34555567999999999999765432    110             01146677776 55554432    22211 1111


Q ss_pred             ccc----CCC--C-CCCccceeeehhhhccC----------CCCCCh-HHHHHHHhhhhcCCcEEEEEeChHH------H
Q 026623          133 WCE----GFS--T-YPRTYDLIHANGVFSLY----------ENTCKP-EDILLEMDRILRPEGAVIFRDEVDA------L  188 (235)
Q Consensus       133 ~~e----~l~--~-~p~sFDlV~a~~vl~h~----------~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~------~  188 (235)
                      ...    .+.  . ....||+|++|==|.-.          +...+. ..++.-+.+.|+|||.+.+--+..+      -
T Consensus       239 ~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~  318 (524)
T d2ar0a1         239 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG  318 (524)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred             chhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhh
Confidence            100    011  0 12679999996544311          011111 2578889999999999777754332      2


Q ss_pred             HHHHHHHhccCceeEeecCCCCCC----CCceEEEEEec
Q 026623          189 NKVRKFAEGMRWDTKMMDHEDGPL----MPEKILIAVKQ  223 (235)
Q Consensus       189 ~~i~~~~~~~~W~~~~~~~~~~~~----~~e~~l~~~k~  223 (235)
                      ..+++.+-.-++-..+...+.+-+    -+--||+.+|.
T Consensus       319 ~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~  357 (524)
T d2ar0a1         319 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG  357 (524)
T ss_dssp             HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred             HHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECC
Confidence            345555444445444444443322    45678888874

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.72  E-value=0.023  Score=49.89  Aligned_cols=125  Identities=17%  Similarity=0.265  Sum_probs=71.6

Q ss_pred             ccccccchHHHHHHHHHHHHHhh----hh--CC--CCCceEeeeccccchHH--------HHHhc-------CCCceeEE
Q 026623           53 GKSYQEDSKLWKKHVNAYKKMNS----LI--GT--RRYRNVMDMNAGLGGFA--------AALES-------PKSWVMNV  109 (235)
Q Consensus        53 ~~~f~~d~~~W~~~v~~y~~~l~----~l--~~--~~~r~VLD~GCG~G~fa--------a~L~~-------~~~~~~~V  109 (235)
                      ...|...+..=+..+..-+.++.    .+  ..  .+.-+|.|+||..|.-+        .++.+       .+.-...|
T Consensus        15 ~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qv   94 (359)
T d1m6ex_          15 ENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQI   94 (359)
T ss_dssp             STTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence            44567776654444443333332    11  11  22357999999999643        23321       12235677


Q ss_pred             eecCcc-ccHHHHHHc--------------CccccccccccCCCCCC-CccceeeehhhhccCCCC-C------------
Q 026623          110 VPTTAK-NTLGVIYER--------------GLIGIYHDWCEGFSTYP-RTYDLIHANGVFSLYENT-C------------  160 (235)
Q Consensus       110 ~~~D~s-~~L~~~~~R--------------gl~~~~~~~~e~l~~~p-~sFDlV~a~~vl~h~~~~-~------------  160 (235)
                      .--|.+ +--...+..              |.+|.+++-     .+| +|.|++|++..+|++... |            
T Consensus        95 f~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~r-----LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~  169 (359)
T d1m6ex_          95 FLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGR-----LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMA  169 (359)
T ss_dssp             EEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC-----CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSC
T ss_pred             EeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhh-----cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEc
Confidence            777777 655544432              122333321     245 999999999999987421 0            


Q ss_pred             -----------------ChHHHHHHHhhhhcCCcEEEEE
Q 026623          161 -----------------KPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       161 -----------------~~~~~L~Em~RVLRPGG~lii~  182 (235)
                                       |+..+|+==.+-|+|||.+++.
T Consensus       170 ~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~  208 (359)
T d1m6ex_         170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence                             1123455555667999999997

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.34  E-value=0.0062  Score=47.23  Aligned_cols=102  Identities=11%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHH-HHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCC-CCCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAA-ALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGF-STYP  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa-~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l-~~~p  141 (235)
                      |..++...+..+..+||=+|||.-++++ .+++ .+.  ..|+..|.+ +.++.+.+-|....+.    ++.|.+ ...+
T Consensus        17 ~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~   94 (174)
T d1f8fa2          17 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITD   94 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcC
Confidence            4434443444557789999998776543 3333 232  246677777 7888888877543321    111111 1124


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +.||+|+-         -..-...+.+..++|||+|.+++.
T Consensus        95 gg~D~vid---------~~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          95 GGVNFALE---------STGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             SCEEEEEE---------CSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEE---------cCCcHHHHHHHHhcccCceEEEEE
Confidence            67898873         112367889999999999999885

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.011  Score=45.32  Aligned_cols=94  Identities=17%  Similarity=0.051  Sum_probs=61.5

Q ss_pred             CCCCCceEeeeccccchHHHHHhc--CCCceeEEeecCcc-ccHHHHHHcCccccccccccCC--------CCCCCccce
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALES--PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF--------STYPRTYDL  146 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l--------~~~p~sFDl  146 (235)
                      +..+..+||=+|||..++.+....  .+  ..+|+.+|.+ +.++.+.+-|....+....+..        ..+...||+
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence            334467899999998876544433  34  3478899988 8888888877533221110110        012356888


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+-.         ..-...+......|||||.+++.
T Consensus       101 vid~---------~G~~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2         101 TIEC---------TGAEASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             EEEC---------SCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEec---------cCCchhHHHHHHHhcCCCEEEEE
Confidence            8741         12357888999999999999987

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.015  Score=44.68  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             CCCCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC------CCCCCccceee
Q 026623           79 TRRYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF------STYPRTYDLIH  148 (235)
Q Consensus        79 ~~~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l------~~~p~sFDlV~  148 (235)
                      ..+..+||-.||  |.|.++..+++. +   ..|+.++.+ +.++.+.+.|....+..--+.+      .+.++.||+|+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred             CCCCCEEEEEeccccccccccccccccC---cccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEe
Confidence            345679999997  456666666653 4   356666666 7788888877533321000111      12347799998


Q ss_pred             ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .          |.=...+.+..++|||||.++.-
T Consensus       103 d----------~~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         103 E----------MLANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             E----------SCHHHHHHHHHHHEEEEEEEEEC
T ss_pred             e----------cccHHHHHHHHhccCCCCEEEEE
Confidence            5          12246788889999999999985

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0029  Score=48.87  Aligned_cols=94  Identities=12%  Similarity=0.046  Sum_probs=57.7

Q ss_pred             CCCCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cccccCCCCCCCccceeeehhhh
Q 026623           79 TRRYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HDWCEGFSTYPRTYDLIHANGVF  153 (235)
Q Consensus        79 ~~~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~~~e~l~~~p~sFDlV~a~~vl  153 (235)
                      -.+..+||-+||| .|.++..+++. +   .+|+.+|.+ +.++.+.+-|....+  .+..+......+.||+|+....-
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G---~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMG---AETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHT---CEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhcc---ccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence            3446799999999 45555555543 4   368888888 888888887753322  11111111234789987642111


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .+       ...+....++|||||.+++-
T Consensus       102 ~~-------~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2         102 LT-------DIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             ST-------TCCTTTGGGGEEEEEEEEEC
T ss_pred             Cc-------cchHHHHHHHhhccceEEEe
Confidence            10       11245678999999999887

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.49  E-value=0.011  Score=52.28  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=60.9

Q ss_pred             CceEeeeccccchHHHH-HhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-----------------ccccccccC-C
Q 026623           82 YRNVMDMNAGLGGFAAA-LESPKSWVMNVVPTTAK-NTLGVIYER----GLI-----------------GIYHDWCEG-F  137 (235)
Q Consensus        82 ~r~VLD~GCG~G~faa~-L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-----------------~~~~~~~e~-l  137 (235)
                      ..+|||+.||+|.++.. ..+.+  +..|+..|.+ +.++.+.+.    |+-                 ...+..+-. +
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~--~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCC--CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            45899999999999884 44445  3479999999 788776543    110                 001111100 1


Q ss_pred             CCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          138 STYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       138 ~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ..-.+.||+|...- |      -....+|.-.-|-+|.||++.++
T Consensus       124 ~~~~~~fDvIDiDP-f------Gs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         124 AERHRYFHFIDLDP-F------GSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             HHSTTCEEEEEECC-S------SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhcCcCCcccCCC-C------CCcHHHHHHHHHHhccCCEEEEE
Confidence            11236799998632 1      24578999999999999999998

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.28  E-value=0.026  Score=43.86  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             CCCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC-----C-CCCCccceeeehh
Q 026623           80 RRYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-----S-TYPRTYDLIHANG  151 (235)
Q Consensus        80 ~~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-----~-~~p~sFDlV~a~~  151 (235)
                      .+..+||=+|||. |.++..+++.-. ...|+.+|.+ +.++.+.+-|....+..--+.+     . +..+-||+|+-. 
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~-  103 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA-  103 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC-
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc-
Confidence            3456888899987 666666665321 2358888988 7788888877533321111111     0 123569988641 


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                          .    .-...+.+..++|||||.+++.
T Consensus       104 ----~----g~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         104 ----G----GGSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             ----S----SCTTHHHHHHHHEEEEEEEEEC
T ss_pred             ----c----CCHHHHHHHHHHHhcCCEEEEE
Confidence                1    1135678888999999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.90  E-value=0.092  Score=40.60  Aligned_cols=94  Identities=6%  Similarity=-0.143  Sum_probs=61.3

Q ss_pred             CCCCCceEeeeccccc-hHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-------CCCCcccee
Q 026623           78 GTRRYRNVMDMNAGLG-GFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-------TYPRTYDLI  147 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G-~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-------~~p~sFDlV  147 (235)
                      +..+..+||=+|||.= .++..+++. +  ...|+.+|.+ ..++.+.+-|....+..--+.-.       +.++-+|+|
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~G--a~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~v  102 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS  102 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhC--CceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence            3345678999999984 455555442 3  3468888988 88889988886443311001100       123667888


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +=         -..-..++.+..+.|||| |.+++-
T Consensus       103 ie---------~~G~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         103 LD---------CAGTAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             EE---------SSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EE---------ecccchHHHHHHHHhhcCCeEEEec
Confidence            62         112468899999999996 999887

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.028  Score=43.41  Aligned_cols=92  Identities=23%  Similarity=0.162  Sum_probs=59.6

Q ss_pred             CCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccC-------CC--CCCCcccee
Q 026623           80 RRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG-------FS--TYPRTYDLI  147 (235)
Q Consensus        80 ~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~-------l~--~~p~sFDlV  147 (235)
                      ..+.+||-+|||. |.++..+++. +  ..+|+.+|.+ +.++.+.+-|....+....+.       +.  +..+.||+|
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCCEEEEECCCccchhheecccccc--cccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence            3468999999984 5566666653 4  3478889888 888888887753222111111       11  123568998


Q ss_pred             eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      +-.     .    .-...+.+.-+.|||||.+++-
T Consensus       105 id~-----v----G~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         105 LEA-----T----GDSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEC-----S----SCTTHHHHHHHHEEEEEEEEEC
T ss_pred             eec-----C----CchhHHHHHHHHhcCCCEEEEE
Confidence            741     1    1135788889999999999876

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.023  Score=47.28  Aligned_cols=48  Identities=8%  Similarity=0.183  Sum_probs=36.1

Q ss_pred             hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc
Q 026623           74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER  124 (235)
Q Consensus        74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R  124 (235)
                      ...+.....+.||.+|||+|.++..|++++.   +|++++.. .+.+...++
T Consensus        14 v~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_          14 VSAINPQKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHCCCTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTC
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHH
Confidence            3344555578999999999999999998753   58888887 555655544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.32  E-value=0.14  Score=39.40  Aligned_cols=104  Identities=9%  Similarity=-0.007  Sum_probs=61.8

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-------CCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-------TYP  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-------~~p  141 (235)
                      |..+++..+..+..+||=+|||..++.+....+-.....|+.+|.+ +.++.+.+-|....+..-.++..       +-+
T Consensus        16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~   95 (174)
T d1p0fa2          16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN   95 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence            3333333334456899999999887655443321113579999998 88999998886443311111110       123


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcC-CcEEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRP-EGAVIFR  182 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRP-GG~lii~  182 (235)
                      +-+|+|+-.         ..-...+.+..+.||+ +|.+++-
T Consensus        96 ~G~d~vid~---------~g~~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          96 GGVDYAVEC---------AGRIETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             SCBSEEEEC---------SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCcEEEEc---------CCCchHHHHHHHHHHHhcCceEEE
Confidence            567777631         1235677777776665 5888875

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.052  Score=45.80  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH
Q 026623           77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE  123 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~  123 (235)
                      ++......||++|+|+|.++..|++++.   .|++++.. .+++...+
T Consensus        17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~   61 (278)
T d1zq9a1          17 AALRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHK   61 (278)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHH
Confidence            4445578999999999999999998753   57777776 55554433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.19  E-value=0.028  Score=43.10  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=58.4

Q ss_pred             CCceEeeeccccchHHH-HHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-----CCCCccceeeehhh
Q 026623           81 RYRNVMDMNAGLGGFAA-ALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-----TYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa-~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-----~~p~sFDlV~a~~v  152 (235)
                      +..+||=.|||..++.+ .+++ .+  ...|+.+|.+ +.++.+.+-|....+..-.+...     +..+-+|+|+-   
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g--~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid---  106 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMT--PATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMD---  106 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEE---
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhc--CcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEE---
Confidence            35789999999877553 4433 33  2357888887 77888877775333311111110     12356888873   


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                            -..-...+....+.|||||.+++.
T Consensus       107 ------~~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         107 ------FVGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             ------SSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             ------ecCcchHHHHHHHHHhCCCEEEEE
Confidence                  122357899999999999999985

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.69  E-value=0.64  Score=38.04  Aligned_cols=138  Identities=22%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-Cccceeeehh---hhcc
Q 026623           81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHANG---VFSL  155 (235)
Q Consensus        81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~~---vl~h  155 (235)
                      ...+|||+=||.|++...|...|.-  -+.++|.. ...+. ++.-.....+.....+.... ..+|++++..   -||-
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~--~v~a~e~d~~a~~~-~~~N~~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~   86 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEV-YEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSI   86 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHH-HHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred             CCCeEEEECccccHHHHHHHHCCCe--EEEEEeCCHHHHHH-HHHHCCCCCcCchhcCchhhcceeeeeecccccchhhh
Confidence            3568999999999999999887742  35567776 33332 22211122222223333222 5689988732   3331


Q ss_pred             C-------CCCCChHHHHHHHhhhhcCCcEEEEEeCh---------HHHHHHHHHHh----ccCceeEeecCCCCCCCCc
Q 026623          156 Y-------ENTCKPEDILLEMDRILRPEGAVIFRDEV---------DALNKVRKFAE----GMRWDTKMMDHEDGPLMPE  215 (235)
Q Consensus       156 ~-------~~~~~~~~~L~Em~RVLRPGG~lii~d~~---------~~~~~i~~~~~----~~~W~~~~~~~~~~~~~~e  215 (235)
                      .       .++..+...+.++-+.+||.  +++-++.         +.++.+...++    .+.|.+.....=..|+.++
T Consensus        87 ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~  164 (327)
T d2c7pa1          87 SGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRE  164 (327)
T ss_dssp             TSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCE
T ss_pred             hhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhh
Confidence            1       12334445555666678994  4444322         22333333443    4455443222223566777


Q ss_pred             eE-EEEEec
Q 026623          216 KI-LIAVKQ  223 (235)
Q Consensus       216 ~~-l~~~k~  223 (235)
                      ++ +++.|+
T Consensus       165 R~fivg~r~  173 (327)
T d2c7pa1         165 RIYMICFRN  173 (327)
T ss_dssp             EEEEEEEBG
T ss_pred             hheeeeecc
Confidence            75 556554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.61  E-value=0.23  Score=38.19  Aligned_cols=93  Identities=4%  Similarity=-0.024  Sum_probs=57.7

Q ss_pred             CCCCceEeeeccccchHHHHHhc--CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-------CCCCccceee
Q 026623           79 TRRYRNVMDMNAGLGGFAAALES--PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-------TYPRTYDLIH  148 (235)
Q Consensus        79 ~~~~r~VLD~GCG~G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-------~~p~sFDlV~  148 (235)
                      .....+||=+|||..++.+....  .+  ..+|+.+|.+ +.++.+.+-|-...+..--+.-.       +.++-+|+++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G--~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi  104 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG--ASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTF  104 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC--CceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence            34567899999998775444332  33  3579999998 99999999987544321101111       2346688776


Q ss_pred             ehhhhccCCCCCChHHHHHHHh-hhhcCCcEEEEE
Q 026623          149 ANGVFSLYENTCKPEDILLEMD-RILRPEGAVIFR  182 (235)
Q Consensus       149 a~~vl~h~~~~~~~~~~L~Em~-RVLRPGG~lii~  182 (235)
                      -         -......+.+.. .++|++|.+++.
T Consensus       105 ~---------~~g~~~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2         105 E---------VIGHLETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             E---------CSCCHHHHHHHHTTSCTTTCEEEEC
T ss_pred             E---------eCCchHHHHHHHHHhhcCCeEEEEE
Confidence            3         122345555544 455666888886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.029  Score=42.80  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             CCCCCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-Cccceeeehhhh
Q 026623           78 GTRRYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHANGVF  153 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~~vl  153 (235)
                      +..+..+||=+|||. |.++..+++ .+   ..++.+|.+ +.++.+.+-|....+....+...... +.||+++-... 
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~G---a~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g-  102 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMG---AHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA-  102 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhccc---ccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence            334467888899875 446666665 34   345566666 77788877775433311111111122 67998864211 


Q ss_pred             ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          154 SLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                              -...+....++|+|||.+++.
T Consensus       103 --------~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         103 --------APHNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             --------SCCCHHHHHTTEEEEEEEEEC
T ss_pred             --------cchhHHHHHHHHhcCCEEEEe
Confidence                    123466777899999999986

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.15  E-value=0.14  Score=40.38  Aligned_cols=63  Identities=13%  Similarity=-0.024  Sum_probs=38.9

Q ss_pred             HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEe--e-cCCC--------CCCCCceEEEEEeccc
Q 026623          163 EDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKM--M-DHED--------GPLMPEKILIAVKQYW  225 (235)
Q Consensus       163 ~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~--~-~~~~--------~~~~~e~~l~~~k~~w  225 (235)
                      ...+.|+.|+|+|||.+++.........+...+....|...-  . ....        -....|.+++.+|.-.
T Consensus        54 ~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~k~~~  127 (256)
T d1g60a_          54 YRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKN  127 (256)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEECCCCSCCCCSSSCBCCCEEEEEEESSTT
T ss_pred             HHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceeeeeeEeeecccccccccccccceeeeeccccCcc
Confidence            468999999999999998776655554555555555555431  1 1110        0114577788877643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.04  E-value=0.055  Score=41.02  Aligned_cols=95  Identities=13%  Similarity=0.142  Sum_probs=59.2

Q ss_pred             hCCCCCceEeeecc-c-cchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCC------CCCCCccce
Q 026623           77 IGTRRYRNVMDMNA-G-LGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF------STYPRTYDL  146 (235)
Q Consensus        77 l~~~~~r~VLD~GC-G-~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l------~~~p~sFDl  146 (235)
                      .+..+..+||=+|| | .|.++..+.+ .+  ...|+.++.+ +.++++.+-|....+....+.+      -+.++.||+
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g--~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~  100 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS--GATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDA  100 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT--CCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc--cccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchh
Confidence            34445678999997 4 4444554444 34  2368888877 7888887777422221000110      023467998


Q ss_pred             eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      |+..         ..-...+...-+.|||||.+++.
T Consensus       101 vid~---------~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         101 VIDL---------NNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEES---------CCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             hhcc---------cccchHHHhhhhhcccCCEEEEe
Confidence            8751         12357888899999999999877

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.95  E-value=0.3  Score=36.94  Aligned_cols=104  Identities=8%  Similarity=-0.006  Sum_probs=62.1

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-------CCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-------TYP  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-------~~p  141 (235)
                      |-.++...+..+..+||=+|||.++..+....+......|+.+|.+ +.++.+.+.|....+...-+.-.       +.+
T Consensus        17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (176)
T d2jhfa2          17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN   96 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence            3334433334456789999998766444433322224579999998 88999988886544322111110       133


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPE-GAVIFR  182 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~  182 (235)
                      +-+|+|+-..         .....+....+.+++| |.+++.
T Consensus        97 ~G~D~vid~~---------G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          97 GGVDFSFEVI---------GRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SCBSEEEECS---------CCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCEEEecC---------CchhHHHHHHHHHhcCCcceEEe
Confidence            6788887411         2356777788888886 555555

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.79  E-value=0.33  Score=36.29  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             eEeeecccc-c-hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           84 NVMDMNAGL-G-GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        84 ~VLD~GCG~-G-~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      +|+=+|||. | .+|..|.+.+ +...|++.|.+ +.++.+.+.|.+.......+  .......|+|+..-=.      .
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~dlIila~p~------~   73 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDLGIIDEGTTSIA--KVEDFSPDFVMLSSPV------R   73 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHTTSCSEEESCGG--GGGGTCCSEEEECSCH------H
T ss_pred             EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEECChHHHHHHHHhhcchhhhhhhh--hhhccccccccccCCc------h
Confidence            577789986 4 4777887765 34579999999 89999999987654321111  1112567888752111      1


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEeC--hHHHHHHHHHHh
Q 026623          161 KPEDILLEMDRILRPEGAVIFRDE--VDALNKVRKFAE  196 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d~--~~~~~~i~~~~~  196 (235)
                      ....++.|+...++++-.++-.-.  ....+.+++...
T Consensus        74 ~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~  111 (171)
T d2g5ca2          74 TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (171)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             hhhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence            356889999999988765544332  345556665543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.83  E-value=0.11  Score=38.93  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=57.3

Q ss_pred             CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC----CCC-CCCccceeeehh
Q 026623           78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG----FST-YPRTYDLIHANG  151 (235)
Q Consensus        78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~----l~~-~p~sFDlV~a~~  151 (235)
                      +..+..+||=.|||.-++++....+. +...|+.++.+ +.++.+.+-|....+..--+.    +.. .++-+|+|.+. 
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  101 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA-  101 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS-
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec-
Confidence            33456788889999877654443321 12368888888 888888887753332110011    110 12344555431 


Q ss_pred             hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                               --...+....+.|||||.+++.
T Consensus       102 ---------~~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         102 ---------VSKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             ---------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ---------CCHHHHHHHHHHhccCCceEec
Confidence                     1257899999999999999986

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.12  E-value=0.15  Score=38.72  Aligned_cols=100  Identities=15%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             HHHHhhhhCCCCCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC------C
Q 026623           70 YKKMNSLIGTRRYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS------T  139 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~------~  139 (235)
                      |..+.......+..+||=.|+  |.|.++..|++. +   ..++.++.+ +.++.+.+.|....+....+.+.      +
T Consensus        14 ~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g---~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t   90 (183)
T d1pqwa_          14 WHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT   90 (183)
T ss_dssp             HHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCEEEEECCCCCcccccchhhcccc---ccceeeecccccccccccccccccccCCccCHHHHHHHHh
Confidence            433333223344678887663  455677777654 3   245554444 67788887775333211111111      2


Q ss_pred             CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .++-||+|+...          -...+.+..++|||+|.++..
T Consensus        91 ~~~g~d~v~d~~----------g~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          91 DGYGVDVVLNSL----------AGEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TTCCEEEEEECC----------CTHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCEEEEEecc----------cchHHHHHHHHhcCCCEEEEE
Confidence            347799998611          135788899999999999986

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.86  E-value=0.053  Score=43.64  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             CCccceeeehh----hhccCCCCC----ChHHHHHHHhhhhcCCcEEEEE
Q 026623          141 PRTYDLIHANG----VFSLYENTC----KPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       141 p~sFDlV~a~~----vl~h~~~~~----~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      ++|+|+|+++=    .+.......    .+...+.|+.|+|||||.+++.
T Consensus        21 d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_          21 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            48899998732    221111111    2468899999999999999986

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.84  E-value=0.45  Score=35.57  Aligned_cols=102  Identities=7%  Similarity=-0.133  Sum_probs=60.4

Q ss_pred             HHHHhhhhCCCCCceEeeeccccch-HHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC-------CC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGG-FAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-------ST  139 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~-faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-------~~  139 (235)
                      |..+.+..+-.+..+||=.|||..+ ++..+++. +  ...|+.+|.+ +.++.+.+-|....+...-+.-       .+
T Consensus        17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G--~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~   94 (176)
T d2fzwa2          17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM   94 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHh--cCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHH
Confidence            3333333333456789989988544 44444432 3  2468888887 7788888877544321110000       01


Q ss_pred             CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .++-+|+|+-.         -.-..++......+++||.+++-
T Consensus        95 ~~~g~D~vid~---------~G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          95 TDGGVDYSFEC---------IGNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             TTSCBSEEEEC---------SCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             cCCCCcEeeec---------CCCHHHHHHHHHhhcCCceeEEE
Confidence            34668888741         12357888899999999887654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=89.83  E-value=0.58  Score=37.79  Aligned_cols=132  Identities=11%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCCCCC-Cccceeeeh---hhhccC-
Q 026623           84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFSTYP-RTYDLIHAN---GVFSLY-  156 (235)
Q Consensus        84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~~p-~sFDlV~a~---~vl~h~-  156 (235)
                      +|||+=||.|+|...|...|.-  -+..+|.. ...+ .++.-... .++.....+...+ ...|++++.   .-|+-. 
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~--~~~a~e~d~~a~~-~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag   78 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFR--IICANEYDKSIWK-TYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGG   78 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCE--EEEEEECCHHHHH-HHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSS
T ss_pred             eEEEeCcCcCHHHHHHHHCCCE--EEEEEeCCHHHHH-HHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccc
Confidence            7999999999999998876632  24566666 3333 22322211 1122223343222 468999874   233321 


Q ss_pred             --CCCCChH-HHH---HHHhhhhcCCcEEEEEeChH---------H----HHHHHHHHhccCceeEeecCCCCCCCCceE
Q 026623          157 --ENTCKPE-DIL---LEMDRILRPEGAVIFRDEVD---------A----LNKVRKFAEGMRWDTKMMDHEDGPLMPEKI  217 (235)
Q Consensus       157 --~~~~~~~-~~L---~Em~RVLRPGG~lii~d~~~---------~----~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~  217 (235)
                        ....+.. .++   .++-..+||-  +++.|+..         .    +..+..+-..+.|.+-....=..|+.++++
T Consensus        79 ~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvPQ~R~R~  156 (324)
T d1dcta_          79 SLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRV  156 (324)
T ss_dssp             CCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCSBCCEEE
T ss_pred             ccccccccccchHHHHHHHHHhhCCc--eeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccccCchhhcee
Confidence              1112322 333   3455567894  44444321         1    222333334666665532222467788887


Q ss_pred             EEE
Q 026623          218 LIA  220 (235)
Q Consensus       218 l~~  220 (235)
                      ++.
T Consensus       157 fiv  159 (324)
T d1dcta_         157 FYI  159 (324)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.79  E-value=0.49  Score=35.46  Aligned_cols=103  Identities=7%  Similarity=-0.050  Sum_probs=59.2

Q ss_pred             HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-------CCC
Q 026623           70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-------TYP  141 (235)
Q Consensus        70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-------~~p  141 (235)
                      |..+....+..+..+||=+|||.+++.+....+..-..+|+.+|.+ +.++.+.+-|....+...-+...       +.+
T Consensus        17 y~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~   96 (175)
T d1cdoa2          17 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTN   96 (175)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHT
T ss_pred             HHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhcc
Confidence            4444433344456789999999976544443221123469999998 88999999885443311111111       112


Q ss_pred             CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623          142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIF  181 (235)
Q Consensus       142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii  181 (235)
                      +-+|+|+-         -.--..++......+++||..++
T Consensus        97 ~G~d~vid---------~~G~~~~~~~a~~~~~~g~~~~~  127 (175)
T d1cdoa2          97 GGVDFSLE---------CVGNVGVMRNALESCLKGWGVSV  127 (175)
T ss_dssp             SCBSEEEE---------CSCCHHHHHHHHHTBCTTTCEEE
T ss_pred             CCcceeee---------ecCCHHHHHHHHHHhhCCCccee
Confidence            45777753         11235667777777777654444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.97  E-value=0.58  Score=34.81  Aligned_cols=100  Identities=13%  Similarity=0.017  Sum_probs=64.0

Q ss_pred             eEeeeccc--cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623           84 NVMDMNAG--LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC  160 (235)
Q Consensus        84 ~VLD~GCG--~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~  160 (235)
                      +|.=+|+|  -+.+|..|.+++   .+|++.|.+ +.++.+.++|++....+..+.+    ...|+|+.+     +| ..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g---~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIila-----vp-~~   68 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLC-----TP-IQ   68 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEEC-----SC-HH
T ss_pred             EEEEEeecHHHHHHHHHHHHCC---CEEEEEECCchHHHHHHHhhccceeeeecccc----ccccccccc-----Cc-Hh
Confidence            35556887  345788888776   368899988 8888888998765443222221    577888741     22 12


Q ss_pred             ChHHHHHHHhhhhcCCcEEEEEeC--hHHHHHHHHHHh
Q 026623          161 KPEDILLEMDRILRPEGAVIFRDE--VDALNKVRKFAE  196 (235)
Q Consensus       161 ~~~~~L~Em~RVLRPGG~lii~d~--~~~~~~i~~~~~  196 (235)
                      .++.++.|+...|+|+-+++-.-+  ......++++..
T Consensus        69 ~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~  106 (165)
T d2f1ka2          69 LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (165)
T ss_dssp             HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             hhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence            467899999888888886654432  233444555443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.63  E-value=0.19  Score=37.68  Aligned_cols=94  Identities=12%  Similarity=0.039  Sum_probs=56.5

Q ss_pred             hCCCCCceEeeeccccchH-HHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC----CC-CCCCccceeee
Q 026623           77 IGTRRYRNVMDMNAGLGGF-AAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG----FS-TYPRTYDLIHA  149 (235)
Q Consensus        77 l~~~~~r~VLD~GCG~G~f-aa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~----l~-~~p~sFDlV~a  149 (235)
                      .+..+..+||=+|||.=++ +..+++..  ..+|+.+|.+ +.++.+.+-|....+....+.    +- ...+.+|.|.+
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~  100 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVT  100 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEEC
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccc
Confidence            3344567888899987654 44444432  2468888888 888888887753332110011    00 01233444443


Q ss_pred             hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                                +.-...+.+..+.|||||.+++-
T Consensus       101 ----------~~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         101 ----------AVSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             ----------CSCHHHHHHHHTTEEEEEEEEEC
T ss_pred             ----------cccchHHHHHHHHhcCCcEEEEE
Confidence                      12246788899999999999885

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.34  E-value=1  Score=36.69  Aligned_cols=135  Identities=16%  Similarity=0.186  Sum_probs=62.9

Q ss_pred             ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc--ccccccccCCCC--CC-Cccceeeehh---hh
Q 026623           83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI--GIYHDWCEGFST--YP-RTYDLIHANG---VF  153 (235)
Q Consensus        83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~--~~~~~~~e~l~~--~p-~sFDlV~a~~---vl  153 (235)
                      .+|+|+=||.|+|...|...+.-.--+.++|.. ...+. ++.-..  ..+.+..+.+..  ++ ..+|++++..   -|
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~-~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f   81 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEV-YKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF   81 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHH-HHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHH-HHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence            479999999999998887655311124466665 33332 222111  112222232321  12 3688888743   23


Q ss_pred             ccCCC---CC-ChHHHHHHHhhhh-----cCCcEEEEEeChH------HHHHHHHHHhcc----CceeEeecCCCCCCCC
Q 026623          154 SLYEN---TC-KPEDILLEMDRIL-----RPEGAVIFRDEVD------ALNKVRKFAEGM----RWDTKMMDHEDGPLMP  214 (235)
Q Consensus       154 ~h~~~---~~-~~~~~L~Em~RVL-----RPGG~lii~d~~~------~~~~i~~~~~~~----~W~~~~~~~~~~~~~~  214 (235)
                      |-.-.   .. +...++.|+.|++     ||-  +++-|+..      ..+.|.+.++.+    .|.+.....=.-|+.+
T Consensus        82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R  159 (343)
T d1g55a_          82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSR  159 (343)
T ss_dssp             --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCC
T ss_pred             cccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccc
Confidence            31100   01 1224566666665     574  55555432      233333334444    4544321111356778


Q ss_pred             ceEEEE
Q 026623          215 EKILIA  220 (235)
Q Consensus       215 e~~l~~  220 (235)
                      +++++.
T Consensus       160 ~Rvfiv  165 (343)
T d1g55a_         160 LRYFLI  165 (343)
T ss_dssp             CEEEEE
T ss_pred             eeEEEE
Confidence            887553

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=0.38  Score=36.20  Aligned_cols=91  Identities=12%  Similarity=0.081  Sum_probs=58.7

Q ss_pred             CCCceEeeeccc--cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc----cccccCCC--CCCCccceeeeh
Q 026623           80 RRYRNVMDMNAG--LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY----HDWCEGFS--TYPRTYDLIHAN  150 (235)
Q Consensus        80 ~~~r~VLD~GCG--~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~----~~~~e~l~--~~p~sFDlV~a~  150 (235)
                      .+..+||=.|+|  .|.++..|++.  +...|+.++.+ +.++.+.+-|-...+    .++.+.+-  +-++.+|+|+..
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~  104 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS  104 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeC
Confidence            345788887665  45677777664  23478888888 778888887743222    22222221  235789988751


Q ss_pred             hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .          -...+.+..+.|+|+|.+++.
T Consensus       105 ~----------g~~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         105 V----------GRDTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             S----------CGGGHHHHHHTEEEEEEEEEC
T ss_pred             c----------cHHHHHHHHHHHhcCCeeeec
Confidence            1          124678889999999998776

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.75  E-value=0.69  Score=35.04  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             HHHHHhhhhCCCCCceEeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC------CC
Q 026623           69 AYKKMNSLIGTRRYRNVMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF------ST  139 (235)
Q Consensus        69 ~y~~~l~~l~~~~~r~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l------~~  139 (235)
                      .|..+....+-.+..+||=.|++.  |..+..|++..  ...|+.++.+ +.++.+.+.|-...+...-+.+      -+
T Consensus        17 A~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          17 AYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA   94 (182)
T ss_dssp             HHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHh
Confidence            344443333334467888777744  45666776642  2467777766 7788888877533321111111      12


Q ss_pred             CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                      .++-+|+|+-          |-=...+.+..+.|||||.+++.
T Consensus        95 ~~~Gvd~v~D----------~vG~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          95 SPDGYDCYFD----------NVGGEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CTTCEEEEEE----------SSCHHHHHHHGGGEEEEEEEEEC
T ss_pred             hcCCCceeEE----------ecCchhhhhhhhhccCCCeEEee
Confidence            3467888863          11247889999999999999985

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=86.64  E-value=0.36  Score=39.93  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             ccccchHHHHHHHHH--HHHHhhhh--CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCc----
Q 026623           55 SYQEDSKLWKKHVNA--YKKMNSLI--GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL----  126 (235)
Q Consensus        55 ~f~~d~~~W~~~v~~--y~~~l~~l--~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl----  126 (235)
                      +|......||..-..  -..+...+  +.+...+|||+=||.|.-+..|+..+.   .|+.++-+..+....+.|+    
T Consensus        58 dF~~g~~~~R~~~~~~~~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~~  134 (250)
T d2oyra1          58 DFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGY  134 (250)
T ss_dssp             CSSSHHHHHHHHHSCGGGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHhhhccCcchhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHHH
Confidence            587777777765431  11122233  334345899999999998888887653   5888877633332222221    


Q ss_pred             ------------ccccccc-ccCCCCCCCccceeeehhhhccC
Q 026623          127 ------------IGIYHDW-CEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus       127 ------------~~~~~~~-~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                                  +..++.. .+-|......||+|...=.|.+-
T Consensus       135 ~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         135 ADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred             hCchhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCccc
Confidence                        1122222 23355456789999998888654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=83.73  E-value=0.99  Score=38.44  Aligned_cols=97  Identities=16%  Similarity=0.242  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHH-HHhhhhCCCCCceEeeeccccchHHHHHhcC----C--CceeEEeecCccccHHHHHHcCcccc-cc
Q 026623           60 SKLWKKHVNAYK-KMNSLIGTRRYRNVMDMNAGLGGFAAALESP----K--SWVMNVVPTTAKNTLGVIYERGLIGI-YH  131 (235)
Q Consensus        60 ~~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~----~--~~~~~V~~~D~s~~L~~~~~Rgl~~~-~~  131 (235)
                      +..+...+..+. .+...++.....+|+.+|+|.|.+++.+...    +  .-..++..++.|..|.....+-+... -.
T Consensus        57 s~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i  136 (365)
T d1zkda1          57 SQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNI  136 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccc
Confidence            344555554332 2333455545678999999999998776431    1  01346778888866654444323211 11


Q ss_pred             ccccCCCCCCCccceeeehhhhccC
Q 026623          132 DWCEGFSTYPRTYDLIHANGVFSLY  156 (235)
Q Consensus       132 ~~~e~l~~~p~sFDlV~a~~vl~h~  156 (235)
                      .|.+.++..+...-+|+||-+|--+
T Consensus       137 ~w~~~~~~~~~~~g~iiaNE~fDAl  161 (365)
T d1zkda1         137 HWHDSFEDVPEGPAVILANEYFDVL  161 (365)
T ss_dssp             EEESSGGGSCCSSEEEEEESSGGGS
T ss_pred             eeccChhhcccCCeEEEecccCccc
Confidence            2333333233333466666666543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.45  E-value=0.86  Score=35.06  Aligned_cols=89  Identities=17%  Similarity=0.110  Sum_probs=55.8

Q ss_pred             CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c-ccccC-CCCCCCccceeeehhh
Q 026623           81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H-DWCEG-FSTYPRTYDLIHANGV  152 (235)
Q Consensus        81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~-~~~e~-l~~~p~sFDlV~a~~v  152 (235)
                      ...+||=-|+  |.|.++..|++. +.   .|+....+ +.++.+.+-|....+  . .+-+. ..+-++.||+|+=   
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga---~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid---  104 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVD---  104 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEE---
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCC---ceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEE---
Confidence            3567888875  455788888753 43   46666666 778888777753322  1 11111 1223478998763   


Q ss_pred             hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623          153 FSLYENTCKPEDILLEMDRILRPEGAVIFR  182 (235)
Q Consensus       153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~  182 (235)
                        .+     -...+.+..+.|||||.+++.
T Consensus       105 --~v-----gg~~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2         105 --PV-----GGRTLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             --CS-----TTTTHHHHHHTEEEEEEEEEC
T ss_pred             --cC-----CchhHHHHHHHhCCCceEEEe
Confidence              11     125688999999999999987