Citrus Sinensis ID: 026631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHTPHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWRFRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAVD
Secondary Structure (PSIPRED)
ccHHHHHHHccccccHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccHHEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHcccccEEEEEEccccccccccccccccEccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNIAVKAaifnpqnhFINLRAAlfhstpvlerkrrshwhtphwqeeindddpsssrgtswfkkdygrskqtryqghhgggrrgawineeldedegfvDIEHVFESLFgrrqrshwsftyedntgrrssysygynywdhqnwrsrdrqNWRFRVeedyefeeesessesdmasdrqtlglcasgplkleDVKLAYRVCAlkwhpdrhqgsskAVAEEKFKLCSAAYQSLCDKLAVD
Flexible Loop (DISEMBL)
mniavkaaifnpqnhfINLRAALFHSTPVLERKRrshwhtphwqeeindddpsssrGTSWFKkdygrskqtryqghhgggrrgAWINEELDEDEGFVDIEHVFEslfgrrqrshwsftyedntgrrsSYSYgynywdhqnwrsrdrqnWRFRVEEDYEfeeesessesdmasdrQTLGLCASGPLKLEDVKLAYRVCALkwhpdrhqgsskAVAEEKFKLCSAAYQSLCDKLAVD
Low Complexity Region (SEG)
MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHTPHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQghhgggrrgAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTgrrssysygyNYWDHQNWRSRDRQNWRFRVeedyefeeesessesDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAVD
Disordered region (IsUnstruct)
***AVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWH*****************************************RRGAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWRFRV***********************LGLCASGPLKLEDVKLAYRVCALKWHPD***********EKFKLCSAAYQSLCD*****
Disordered Region (DISOPRED)
************QNHFINLRAALFHST***********************************************************NEELDEDEGFVDIEHVFESLFGRRQRSHW***********************************************************QTLGLCASGP***EDVKLAYRVCALKWHPDRHQ******AEEKFKLCSAAYQSLCDKL***
Disordered Region (DISEMBL)
MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHTPHWQE************TSWFKKDYGR*************RRGAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWRFRVEE******************RQTLGLCASGPLKLEDVKLAYRVCALKWHP**********AEEKFKLCSAAYQSLCDKLAVD
Disordered Region (DISPRO)
*NIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRS**********************************************GAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYE**************************************************ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHTPHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWRFRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q8NHS0	232	DnaJ homolog subfamily B	yes	no	0.246	0.25	0.491	2e-06
Q9QYI7	227	DnaJ homolog subfamily B	yes	no	0.246	0.255	0.459	2e-05
A9BNG6	380	Chaperone protein DnaJ OS	yes	no	0.182	0.113	0.534	3e-05
A1VMG1	380	Chaperone protein DnaJ OS	yes	no	0.182	0.113	0.534	3e-05
Q128K1	380	Chaperone protein DnaJ OS	yes	no	0.182	0.113	0.534	6e-05
Q87BS9	368	Chaperone protein DnaJ OS	yes	no	0.174	0.111	0.534	6e-05
B0U3J7	368	Chaperone protein DnaJ OS	yes	no	0.174	0.111	0.534	6e-05
B2I6F5	368	Chaperone protein DnaJ OS	yes	no	0.174	0.111	0.534	6e-05
Q9PB06	368	Chaperone protein DnaJ OS	yes	no	0.174	0.111	0.534	6e-05
B9KFK6	373	Chaperone protein DnaJ OS	yes	no	0.165	0.104	0.585	7e-05

>sp|Q8NHS0|DNJB8_HUMAN DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)

Query: 170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC 229
           MA+  + LG+ AS     ED+K AYR  AL+WHPD++   +K  AE+KFKL S AY+ L 
Sbjct: 1   MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNP-DNKEEAEKKFKLVSEAYEVLS 57

Query: 230 D 230
           D
Sbjct: 58  D 58

Homo sapiens (taxid: 9606)

>sp|Q9QYI7|DNJB8_MOUSE DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC 229
           MA+  + LG+ +S     ED+K AYR  AL+WHPD++   +K  AE+KFK  S AY+ L 
Sbjct: 1   MANYYEVLGVQSSA--SPEDIKKAYRKLALRWHPDKNP-DNKEEAEKKFKQVSEAYEVLS 57

Query: 230 D 230
           D
Sbjct: 58  D 58

Mus musculus (taxid: 10090)

>sp|A9BNG6|DNAJ_DELAS Chaperone protein DnaJ OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=dnaJ PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +D+K AYR  A+K+HPDR+QG +   AEEKFK    AY+ L D
Sbjct: 19  DDIKKAYRKLAMKYHPDRNQGDAAREAEEKFKEAKEAYEMLSD 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Delftia acidovorans (strain DSM 14801 / SPH-1) (taxid: 398578)

>sp|A1VMG1|DNAJ_POLNA Chaperone protein DnaJ OS=Polaromonas naphthalenivorans (strain CJ2) GN=dnaJ PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           ED+K AYR  A+K HPDR+QG +  V+E+KFK    AY+ L D
Sbjct: 19  EDIKKAYRKLAMKHHPDRNQGDTSKVSEDKFKEAKEAYEMLSD 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044)

>sp|Q128K1|DNAJ_POLSJ Chaperone protein DnaJ OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dnaJ PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +D+K AYR  A+K HPDR+QG    V+EEKFK    AY+ L D
Sbjct: 19  DDIKKAYRKLAMKHHPDRNQGDKSKVSEEKFKEAKEAYEVLSD 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Polaromonas sp. (strain JS666 / ATCC BAA-500) (taxid: 296591)

>sp|Q87BS9|DNAJ_XYLFT Chaperone protein DnaJ OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dnaJ PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +D+K AYR CA+K+HPDR+ G   A AE  FK C  AY+ L D
Sbjct: 19  DDLKKAYRRCAMKYHPDRNPGD--AAAEAAFKECKEAYEVLAD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Xylella fastidiosa (strain Temecula1 / ATCC 700964) (taxid: 183190)

>sp|B0U3J7|DNAJ_XYLFM Chaperone protein DnaJ OS=Xylella fastidiosa (strain M12) GN=dnaJ PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +D+K AYR CA+K+HPDR+ G   A AE  FK C  AY+ L D
Sbjct: 19  DDLKKAYRRCAMKYHPDRNPGD--AAAEAAFKECKEAYEVLAD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Xylella fastidiosa (strain M12) (taxid: 405440)

>sp|B2I6F5|DNAJ_XYLF2 Chaperone protein DnaJ OS=Xylella fastidiosa (strain M23) GN=dnaJ PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +D+K AYR CA+K+HPDR+ G   A AE  FK C  AY+ L D
Sbjct: 19  DDLKKAYRRCAMKYHPDRNPGD--AAAEAAFKECKEAYEVLAD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Xylella fastidiosa (strain M23) (taxid: 405441)

>sp|Q9PB06|DNAJ_XYLFA Chaperone protein DnaJ OS=Xylella fastidiosa (strain 9a5c) GN=dnaJ PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +D+K AYR CA+K+HPDR+ G   A AE  FK C  AY+ L D
Sbjct: 19  DDLKKAYRRCAMKYHPDRNPGD--AAAEAAFKECKEAYEVLAD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Xylella fastidiosa (taxid: 2371)

>sp|B9KFK6|DNAJ_CAMLR Chaperone protein DnaJ OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dnaJ PE=3 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 2/41 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSL 228
           E +K AYR  ALK+HPDR+QG  +  AEEKFKL + AY+ L
Sbjct: 18  ETIKKAYRKMALKYHPDRNQGDKE--AEEKFKLVNEAYEVL 56

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) (taxid: 306263)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
255579747	252	heat shock protein binding protein, puta	0.931	0.869	0.501	4e-57
147790737	338	hypothetical protein VITISV_009634 [Viti	0.948	0.659	0.454	5e-46
359807024	254	uncharacterized protein LOC100807880 [Gl	0.936	0.866	0.479	6e-46
449437573	267	PREDICTED: uncharacterized protein LOC10	0.961	0.846	0.432	8e-46
225441457	261	PREDICTED: uncharacterized protein LOC10	0.944	0.850	0.452	2e-45
297827875	263	DNAJ heat shock N-terminal domain-contai	0.991	0.885	0.426	4e-44
15227500	263	DNAJ heat shock N-terminal domain-contai	0.991	0.885	0.422	1e-43
356500431	241	PREDICTED: uncharacterized protein LOC10	0.859	0.838	0.422	1e-38
186511163	254	DnaJ domain-containing protein [Arabidop	0.940	0.870	0.395	3e-33
297817136	250	predicted protein [Arabidopsis lyrata su	0.927	0.872	0.382	4e-33

>gi|255579747|ref|XP_002530712.1| heat shock protein binding protein, putative [Ricinus communis] gi|223529726|gb|EEF31666.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 158/263 (60%), Gaps = 44/263 (16%)

Query: 1   MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT-------------------- 40
           MN   KAAIF PQ++   LRAALFHSTPVLERKRR+ W                      
Sbjct: 2   MNSGTKAAIFIPQSNCFQLRAALFHSTPVLERKRRNFWDCRSNGYSRRSRNLHGKQSLLR 61

Query: 41  ----------PHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEEL 90
                       W+++ ++DD SSSRGTSWF+K Y +  +    G  G  R G     + 
Sbjct: 62  NVSAYADYLFQSWKDDFDEDDTSSSRGTSWFRKQYSKGSRRNSTGSQGSRRAGRSF--QF 119

Query: 91  DEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWR 150
            EDE  VD+E +F S FG  +  +WSF  E+N   R S +Y  NY++         + WR
Sbjct: 120 CEDE--VDVESIFRSAFGGNRYFYWSFINEENPHWRRSSNYS-NYYE---------RTWR 167

Query: 151 FRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS 210
            R E DY+   ES+S  SD+ASDR  LGL ASGPLK+EDVK AYR CALKWHPDRHQGSS
Sbjct: 168 HRFEHDYDSSPESDSLGSDLASDRLALGLSASGPLKIEDVKNAYRACALKWHPDRHQGSS 227

Query: 211 KAVAEEKFKLCSAAYQSLCDKLA 233
           KA+AEEKFKLCSAAYQSLCDKLA
Sbjct: 228 KAIAEEKFKLCSAAYQSLCDKLA 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790737|emb|CAN63574.1| hypothetical protein VITISV_009634 [Vitis vinifera]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/273 (45%), Positives = 159/273 (58%), Gaps = 50/273 (18%)

Query: 2   NIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWH--------------------TP 41
           N+A+KAA+ N   +  NLR ALFHSTPVL+R+RR+HW+                      
Sbjct: 77  NMAMKAALINXNPNCTNLRXALFHSTPVLDRRRRTHWNFGGGASRNSSQRFNYYARSRKL 136

Query: 42  HWQEEI-------------------NDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRR 82
           H ++ +                   ++DD  SS+G SWF+K Y      R QG+ G   R
Sbjct: 137 HAKQTLLRNVSAYAEYLFQSGQSDHDEDDGFSSKGPSWFRKQYWDKGSKRDQGNAGPQSR 196

Query: 83  GAWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWR 142
            +W   +  ED+   ++E +  S FG  +  +WSF  E+N    SS  Y  NY       
Sbjct: 197 -SWRGFQFCEDD--XEVETILRSAFGGSRTFYWSFINEENPQWGSSSGYRNNY------- 246

Query: 143 SRDRQNWRFRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWH 202
            R   NWR R++E+Y +  +S+SSESD+AS R  LGL  SGPLKLE+VK AYR CALKWH
Sbjct: 247 -RSSWNWRDRMDEEYGYSTDSDSSESDLASHRMALGLSVSGPLKLEEVKNAYRTCALKWH 305

Query: 203 PDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAVD 235
           PDRHQG+SKA+AEEKFKLCSAAYQSLCDKLAVD
Sbjct: 306 PDRHQGASKAIAEEKFKLCSAAYQSLCDKLAVD 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807024|ref|NP_001241336.1| uncharacterized protein LOC100807880 [Glycine max] gi|255636268|gb|ACU18474.1| unknown [Glycine max]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 156/265 (58%), Gaps = 45/265 (16%)

Query: 5   VKAAIF---NPQNHFINLRAALFHSTPVLERKRRSHW------HTPH------------- 42
           + +AIF   N  N   +LRAALFHST  L+RKRR+HW      HT               
Sbjct: 1   MNSAIFKASNSNNLHSSLRAALFHSTSPLQRKRRNHWDSRGSNHTSRRFRRVQAKHRVMN 60

Query: 43  ------------WQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEEL 90
                       W++ I+ DDPSSSRGTSWFKK Y      RY+  + G       +   
Sbjct: 61  SINDYAESLFQSWKQGIDRDDPSSSRGTSWFKKQYSDGASGRYRNSNKGSSHRYRRDPSF 120

Query: 91  DEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWR 150
            ED+   D+E +  S FG  +  +WSF  E+N   R S  +  N+   ++W      +WR
Sbjct: 121 CEDD--FDVETILRSAFGGNRFFYWSFINEENPQWRRSERFS-NF--EKSW------SWR 169

Query: 151 FRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS 210
           +R E DY+   ES+S +SD+ SDR  LGL ASG LKLEDVK AYRVCALKWHPDRHQGSS
Sbjct: 170 YRNENDYDSSSESDSLDSDLVSDRLALGLSASGSLKLEDVKNAYRVCALKWHPDRHQGSS 229

Query: 211 KAVAEEKFKLCSAAYQSLCDKLAVD 235
           KA+AEEKFKLCSAAYQSLCDKLA+D
Sbjct: 230 KAIAEEKFKLCSAAYQSLCDKLALD 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437573|ref|XP_004136566.1| PREDICTED: uncharacterized protein LOC101221203 [Cucumis sativus] gi|449511332|ref|XP_004163928.1| PREDICTED: uncharacterized LOC101221203 [Cucumis sativus]

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/268 (43%), Positives = 150/268 (55%), Gaps = 42/268 (15%)

Query: 4   AVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT----------------------- 40
            +K A+ NP      L+ A FHST VL+RKRRS+W +                       
Sbjct: 6   GIKTALLNPHADCFILKTAFFHSTSVLDRKRRSYWDSRCNHYTKSFRRINTKQSLLRNVS 65

Query: 41  -------PHWQEEINDDDPSSSRGTSWFKKDYGR-SKQTRYQGHHGGGRRGAWINEELDE 92
                    W++E+  + PSSS GTSWFK    R SK+ R         R      E  E
Sbjct: 66  AYAEFLFQSWRDEVEANGPSSSSGTSWFKSHSFRGSKRDRTNQKPRCSSRSF----EFTE 121

Query: 93  DEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNY-----WDHQNWRSRDRQ 147
           D+   D+E VF+S FG  +  +WSF  E+N   +SS +   NY     W H +       
Sbjct: 122 DDP--DVETVFKSAFGGNRSYYWSFINEENPQWKSSTNNSNNYRRSWTWQHNSNTYGRSW 179

Query: 148 NWRFRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQ 207
           +W+ RV+EDY+   E E+SE+++ S R  LGL ASGPLKLEDVK AYR CA+KWHPDRHQ
Sbjct: 180 SWQHRVDEDYDSSNEYENSEANLVSHRLALGLQASGPLKLEDVKNAYRACAMKWHPDRHQ 239

Query: 208 GSSKAVAEEKFKLCSAAYQSLCDKLAVD 235
           GSSK +AEEKFK+CS AY+SLC+KLAV+
Sbjct: 240 GSSKVMAEEKFKVCSVAYKSLCNKLAVN 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441457|ref|XP_002279725.1| PREDICTED: uncharacterized protein LOC100250423 [Vitis vinifera] gi|297739831|emb|CBI30013.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/272 (45%), Positives = 156/272 (57%), Gaps = 50/272 (18%)

Query: 3   IAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT---------------------- 40
           +A+KAA+ N   +  NLR ALFHSTPVL+R+RR+HW+                       
Sbjct: 1   MAMKAALINRNPNCTNLRTALFHSTPVLDRRRRTHWNFGGGASRNSSQRFNYYARSRKLH 60

Query: 41  -----------------PHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRG 83
                               Q + ++DD  SS+G SWF+K Y      R QG+ G   R 
Sbjct: 61  AKQTLLRNVSAYAEYLFQSGQSDHDEDDGFSSKGPSWFRKQYWDKGSKRDQGNAGPQSR- 119

Query: 84  AWINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRS 143
           +W   +  ED+   ++E +  S FG  +  +WSF  E+N    SS  Y  NY        
Sbjct: 120 SWRGFQFCEDD--TEVETILRSAFGGSRTFYWSFINEENPQWGSSSGYRNNY-------- 169

Query: 144 RDRQNWRFRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHP 203
           R   NWR R++E+Y +  +S+SSESD+AS R  LGL  SGPLKLE+VK AYR CALKWHP
Sbjct: 170 RSSWNWRDRMDEEYGYSTDSDSSESDLASHRMALGLSVSGPLKLEEVKNAYRTCALKWHP 229

Query: 204 DRHQGSSKAVAEEKFKLCSAAYQSLCDKLAVD 235
           DRHQG+SKA+AEEKFKLCSAAYQSLCDKLAVD
Sbjct: 230 DRHQGASKAIAEEKFKLCSAAYQSLCDKLAVD 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827875|ref|XP_002881820.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327659|gb|EFH58079.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 150/265 (56%), Gaps = 32/265 (12%)

Query: 1   MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT-------------------- 40
           MN A++AAI  PQ++   L+ ALFHSTPVLERKRR+ W +                    
Sbjct: 1   MNAAIRAAILRPQSYSSQLKVALFHSTPVLERKRRTSWESKSNVHKKRFRRMREKQELLR 60

Query: 41  ----------PHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEEL 90
                       W +E +DD PSS + TSWFKK Y +  +      HG    G    +  
Sbjct: 61  NVNAFAANMFTSWHDEFDDDGPSSRKQTSWFKKQYSKEPKGNQNNKHGPYSWGKRNFDFC 120

Query: 91  DEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWR 150
           + DE F D+++VF + FG  +   +SFT+E++  R   +S  ++    ++WRS+ R +  
Sbjct: 121 EVDEDF-DVDYVFRTAFGGSRGFSFSFTHEEDEPRWRHHSSRFSNNSKRSWRSKYRLD-E 178

Query: 151 FRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS 210
              EEDY  +     SE +  S RQ LGL  SGPL L+DVK AYR CALKWHPDRHQGS+
Sbjct: 179 DDEEEDYTSDSSDSESEPNQVSHRQALGLSPSGPLNLKDVKHAYRTCALKWHPDRHQGST 238

Query: 211 KAVAEEKFKLCSAAYQSLCDKLAVD 235
           K  AE KFKLCS AYQSLC+KL+V+
Sbjct: 239 KEAAEAKFKLCSVAYQSLCEKLSVN 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227500|ref|NP_181738.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|1871176|gb|AAB63536.1| unknown protein [Arabidopsis thaliana] gi|22531201|gb|AAM97104.1| unknown protein [Arabidopsis thaliana] gi|25083942|gb|AAN72139.1| unknown protein [Arabidopsis thaliana] gi|330254974|gb|AEC10068.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/265 (42%), Positives = 150/265 (56%), Gaps = 32/265 (12%)

Query: 1   MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT-------------------- 40
           MN A++AAI  PQ++   L+ A FHSTPVLERKRR+ W +                    
Sbjct: 1   MNAAIRAAILRPQSYSSQLKTAFFHSTPVLERKRRTSWESKANVHKKRFRRMREKQELLR 60

Query: 41  ----------PHWQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEEL 90
                       W +E +DD PSS + TSWFKK Y +  +      HG    G    +  
Sbjct: 61  NVNAFAANMFTSWHDEFDDDGPSSRKQTSWFKKQYSKEPKGNQNNKHGPYTWGKRNFDFC 120

Query: 91  DEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWR 150
           + DE F D+++VF + FG  +   +SFT+E++  R   +S  ++   +++WRS+ R +  
Sbjct: 121 EVDEDF-DVDYVFRTAFGGSRGFSFSFTHEEDEPRWRHHSSRFSNNSNRSWRSKYRLD-E 178

Query: 151 FRVEEDYEFEEESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS 210
              EEDY  +     SE +  S RQ LGL  SGPL L+DVK AYR CALKWHPDRHQGS+
Sbjct: 179 DEEEEDYTSDSSDSESEPNQVSHRQALGLSPSGPLNLKDVKHAYRTCALKWHPDRHQGST 238

Query: 211 KAVAEEKFKLCSAAYQSLCDKLAVD 235
           K  AE KFKLCS AYQSLC+KL+V+
Sbjct: 239 KEAAEAKFKLCSVAYQSLCEKLSVN 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500431|ref|XP_003519035.1| PREDICTED: uncharacterized protein LOC100812123 [Glycine max]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 133/244 (54%), Gaps = 42/244 (17%)

Query: 23  LFHSTPVLERKRRS------------------------------HWHTPHWQEEINDDDP 52
            FHSTP+LERK R+                               +    W+E++++D P
Sbjct: 9   FFHSTPLLERKSRTFGESRCNNYSKRFRKLRAKQTLLHDVNAYAQFMCQSWKEDVDEDGP 68

Query: 53  SSSRGTSWFKKDYGRSKQTRYQGHHGGGRRGAWINEELDEDEGFVDIEHVFESLFGRRQR 112
           S S G SWF+K Y      R++  +   +     N E  +D+   D+E VF S FG  + 
Sbjct: 69  SPSLGPSWFRKQYSPKGSGRHRNDNQRSKHQFRRNHEFCKDD--FDVETVFRSAFGGNRS 126

Query: 113 SHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNWRFRVEEDYE-FEEESESSESDMA 171
            +WSF  E+N   R S  +  +    ++W      NWR   E  Y     ES+ S+SD+ 
Sbjct: 127 FYWSFINEENPQWRKSGGFSNH---GKSW------NWRRWSENGYNGTSTESDCSQSDLI 177

Query: 172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           SDR  LG+ ASGPLKLEDVK AYR+CALKWHPDRH GS K +AEEKFK CSAAYQSLCDK
Sbjct: 178 SDRLALGMSASGPLKLEDVKNAYRICALKWHPDRHDGSFKVIAEEKFKHCSAAYQSLCDK 237

Query: 232 LAVD 235
           LA+D
Sbjct: 238 LALD 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511163|ref|NP_191361.2| DnaJ domain-containing protein [Arabidopsis thaliana] gi|19423977|gb|AAL87325.1| unknown protein [Arabidopsis thaliana] gi|332646209|gb|AEE79730.1| DnaJ domain-containing protein [Arabidopsis thaliana]

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 143/268 (53%), Gaps = 47/268 (17%)

Query: 1   MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT-----------PHWQEEIN- 48
           M  A++AAI  PQ+++ +L+ ALFHSTP+L+RK +S+                 +  +N 
Sbjct: 1   MMAAIRAAILKPQDYYSHLKTALFHSTPILQRKHQSNSKARSKRFGRKKAKQDLRRNVNA 60

Query: 49  ----------DDDPSSSRGTSWFKKDYGR-SKQTRYQGHHGGGRRGAWINEELDE----- 92
                     D    S + TSWF+K Y R SK+ R    H        I + LD+     
Sbjct: 61  FAQHLFGIWSDGFDYSGKHTSWFEKQYSRVSKRNRNGKTH--------IPQHLDKRCFDF 112

Query: 93  ---DEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNW 149
              DEG+  IE+  ++  G  +   WS T E  T R   YS  +     ++W SR R + 
Sbjct: 113 SEVDEGY-QIEYFLKTALGGSRGFSWSNTREGGT-RSGRYSNNFR----KSWGSRYRLDE 166

Query: 150 RFRVEEDYEFEEESESS--ESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQ 207
               EE+      +  S  E +  S RQTLGL +SGPL LEDVK+AYR CALKWHPDRH 
Sbjct: 167 EEEEEEEEYEYSSTGVSDTEPNQESHRQTLGLSSSGPLNLEDVKIAYRACALKWHPDRHH 226

Query: 208 GSSKAVAEEKFKLCSAAYQSLCDKLAVD 235
            S+K  AEEKFKLC+ AYQSLC+KLA++
Sbjct: 227 TSTKNEAEEKFKLCTVAYQSLCEKLAMN 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817136|ref|XP_002876451.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322289|gb|EFH52710.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/267 (38%), Positives = 140/267 (52%), Gaps = 49/267 (18%)

Query: 1   MNIAVKAAIFNPQNHFINLRAALFHSTPVLERKRRSHWHT-----------PHWQEEIN- 48
           M  A++AAI   Q++   ++ A FHSTP+L RK +S+                 +  +N 
Sbjct: 1   MMAAIRAAILKRQDYCSYIKTAFFHSTPILLRKHQSNSKARSKRLGRKKAKQDLRRNVNA 60

Query: 49  ----------DDDPSSSRGTSWFKKDYGR-SKQTRYQGHHGGGRRGAWINEELDE----- 92
                     D    S + TSWF+K Y R SK+ R    H        I + LD+     
Sbjct: 61  FAQHLFGIWSDGFDYSGKHTSWFEKQYSRVSKRNRNGKRH--------IPQHLDKRCFDF 112

Query: 93  ---DEGFVDIEHVFESLFGRRQRSHWSFTYEDNTGRRSSYSYGYNYWDHQNWRSRDRQNW 149
              D+G+ +IEH   +  G  +R  WS T+ +   R   YS  +     ++W SR    +
Sbjct: 113 SEVDDGY-EIEHFLRTALGGSRRFSWSNTHGEGGTRSGRYSSNFR----KSWGSR----Y 163

Query: 150 RFRVEEDYEFEE-ESESSESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQG 208
           R   EE  ++   ES  +E +  S RQ LGL +SGPL LEDVK+AYR CALKWHPDRH  
Sbjct: 164 RLDEEEGDKYSSTESSDTEPNQESHRQALGLSSSGPLNLEDVKIAYRACALKWHPDRHHA 223

Query: 209 SSKAVAEEKFKLCSAAYQSLCDKLAVD 235
           S+K  AEEKFKLC+ AYQSLC+KLA++
Sbjct: 224 STKNEAEEKFKLCTVAYQSLCEKLAMN 250

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2064622	263	AT2G42080 "AT2G42080" [Arabido	0.808	0.722	0.417	9.7e-46
TAIR|locus:2095818	254	AT3G58020 [Arabidopsis thalian	0.748	0.692	0.405	1.9e-37
TAIR|locus:504955938	268	AT2G18465 "AT2G18465" [Arabido	0.587	0.514	0.348	1.6e-21
WB|WBGene00001042	249	dnj-24 [Caenorhabditis elegans	0.229	0.216	0.491	5.7e-06
TAIR|locus:2174170	128	AT5G16650 [Arabidopsis thalian	0.174	0.320	0.511	7.4e-06
GENEDB_PFALCIPARUM|PFE0055c	402	PFE0055c "heat shock protein,	0.187	0.109	0.511	2.8e-05
UNIPROTKB|Q8I489	402	PFE0055c "Heat shock protein,	0.187	0.109	0.511	2.8e-05
UNIPROTKB|C9J2C4	228	DNAJB6 "DnaJ homolog subfamily	0.178	0.184	0.534	8.2e-05
UNIPROTKB|Q4R7Y5	241	DNAJB6 "DnaJ homolog subfamily	0.178	0.174	0.534	9.6e-05
UNIPROTKB|Q0III6	242	DNAJB6 "DnaJ homolog subfamily	0.178	0.173	0.534	9.7e-05

TAIR|locus:2064622 AT2G42080 "AT2G42080" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 81/194 (41%), Positives = 108/194 (55%)

Query:    43 WQEEINDDDPSSSRGTSWFKKDYGRSKQTRYQXXXXXXXXXAWINEELDE-DEGFVDIEH 101
             W +E +DD PSS + TSWFKK Y +  +   Q            N +  E DE F D+++
Sbjct:    73 WHDEFDDDGPSSRKQTSWFKKQYSKEPKGN-QNNKHGPYTWGKRNFDFCEVDEDF-DVDY 130

Query:   102 VFESLFGRRQRSHWSFTYEDNTXXXXXXXXXXNYWDHQNWRSRDRQNWRFRVXXXXXXXX 161
             VF + FG  +   +SFT+E++           +   +++WRS+ R +             
Sbjct:   131 VFRTAFGGSRGFSFSFTHEEDEPRWRHHSSRFSNNSNRSWRSKYRLD-EDEEEEDYTSDS 189

Query:   162 XXXXXXXDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLC 221
                    +  S RQ LGL  SGPL L+DVK AYR CALKWHPDRHQGS+K  AE KFKLC
Sbjct:   190 SDSESEPNQVSHRQALGLSPSGPLNLKDVKHAYRTCALKWHPDRHQGSTKEAAEAKFKLC 249

Query:   222 SAAYQSLCDKLAVD 235
             S AYQSLC+KL+V+
Sbjct:   250 SVAYQSLCEKLSVN 263

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2095818 AT3G58020 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 75/185 (40%), Positives = 97/185 (52%)

Query:    54 SSRGTSWFKKDYGR-SKQTRYQXXXXXXXXXAWINEELDEDEGFVDIEHVFESLFGRRQR 112
             S + TSWF+K Y R SK+ R               +  + DEG+  IE+  ++  G  + 
Sbjct:    76 SGKHTSWFEKQYSRVSKRNRNGKTHIPQHLDKRCFDFSEVDEGY-QIEYFLKTALGGSRG 134

Query:   113 SHWSFTYEDNTXXXXXXXXXXNYWDHQNWRSRDR--QNWRFRVXXXXXXXXXXXXXXXDM 170
               WS T E  T          N+   ++W SR R  +                     + 
Sbjct:   135 FSWSNTREGGTRSGRYSN---NF--RKSWGSRYRLDEEEEEEEEEYEYSSTGVSDTEPNQ 189

Query:   171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
              S RQTLGL +SGPL LEDVK+AYR CALKWHPDRH  S+K  AEEKFKLC+ AYQSLC+
Sbjct:   190 ESHRQTLGLSSSGPLNLEDVKIAYRACALKWHPDRHHTSTKNEAEEKFKLCTVAYQSLCE 249

Query:   231 KLAVD 235
             KLA++
Sbjct:   250 KLAMN 254

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:504955938 AT2G18465 "AT2G18465" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 52/149 (34%), Positives = 71/149 (47%)

Query:    85 WINEELDEDEGFVDIEHVFESLFGRRQRSHWSFTYEDNTXXXXXXXXXXNYWDHQNWRSR 144
             W  E   +D+   D  + FE+    + R  W  T +               W  + W S 
Sbjct:   131 WHREGNPDDDFGTDANNTFEN----KWRERW--TAQSQKASYSKDSTAGFEW-REGW-SW 182

Query:   145 DRQNWRFRVXXXXXXXXXXXXXXXDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPD 204
               Q+ R +                +  S+R  LGL   GP+K++DVK A+R  ALKWHPD
Sbjct:   183 TTQSQRSK---SWNKESFDEPLNVEFRSERIVLGLPLDGPIKVDDVKNAFRSSALKWHPD 239

Query:   205 RHQGSSKAVAEEKFKLCSAAYQSLCDKLA 233
             +HQG S+  A+EKFKLC  AY+SLC  LA
Sbjct:   240 KHQGPSQVAAQEKFKLCVDAYKSLCSALA 268

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

WB|WBGene00001042 dnj-24 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query:   176 TLGLCASGPLKLEDVKLAYRVCALKWHPDRH-QGSSKAVAEEKFKLCSAAYQSLCDK 231
             TLG+ ++    +E +K AYR  ALKWHPD+H    SK  AE+KFK  + AY+ L DK
Sbjct:    11 TLGISSTSD-DVE-IKKAYRKLALKWHPDKHTDDKSKEEAEQKFKKIAQAYEILTDK 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2174170 AT5G16650 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query:   188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
             E ++L YR  ALKWHPD+H+G S A   EKF+  + AY  L D
Sbjct:    25 ELIRLNYRKLALKWHPDKHKGDSAAT--EKFQEINEAYNVLMD 65

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GENEDB_PFALCIPARUM|PFE0055c PFE0055c "heat shock protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query:   188 EDVKLAYRVCALKWHPDRH-QGSSKAVAEEKFKLCSAAYQSLCDK 231
             +D+K AYR  A+KWHPD+H     K  AE KFKL   AY+ L D+
Sbjct:    94 DDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFKLIGEAYEVLSDE 138

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I489 PFE0055c "Heat shock protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query:   188 EDVKLAYRVCALKWHPDRH-QGSSKAVAEEKFKLCSAAYQSLCDK 231
             +D+K AYR  A+KWHPD+H     K  AE KFKL   AY+ L D+
Sbjct:    94 DDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFKLIGEAYEVLSDE 138

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|C9J2C4 DNAJB6 "DnaJ homolog subfamily B member 6" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query:   188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
             ED+K AYR  ALKWHPD++   +K  AE KFK  + AY+ L D
Sbjct:    17 EDIKKAYRKLALKWHPDKNP-ENKEEAERKFKQVAEAYEVLSD 58

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q4R7Y5 DNAJB6 "DnaJ homolog subfamily B member 6" [Macaca fascicularis (taxid:9541)]

 Score = 113 (44.8 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query:   188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
             ED+K AYR  ALKWHPD++   +K  AE KFK  + AY+ L D
Sbjct:    17 EDIKKAYRKLALKWHPDKNP-ENKEEAERKFKQVAEAYEVLSD 58

GO:0030018 "Z disc" evidence=ISS

UNIPROTKB|Q0III6 DNAJB6 "DnaJ homolog subfamily B member 6" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 9.7e-05, P = 9.7e-05
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query:   188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
             ED+K AYR  ALKWHPD++   +K  AE KFK  + AY+ L D
Sbjct:    17 EDIKKAYRKLALKWHPDKNP-ENKEEAERKFKQVAEAYEVLSD 58

GO:0030018 "Z disc" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-11
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-10
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-10
pfam00226	63	pfam00226, DnaJ, DnaJ domain	5e-09
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-08
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	5e-08
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	5e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	5e-07
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	6e-07
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-06
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-06
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-05
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	3e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-05
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	6e-05
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	7e-05
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-05
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	9e-05
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-04
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-04
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-04
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-04
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-04
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	6e-04
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	9e-04
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	0.001
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	0.001
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	0.002

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 177 LGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           LG+     L  +++K AYR  ALK+HPD++ G  K  AEEKFK  + AY+ L D 
Sbjct: 7   LGVPRDASL--DEIKKAYRKLALKYHPDKNPG-DKEEAEEKFKEINEAYEVLSDP 58

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AYR  A K+HPDR+ G     AEEKFK  + AY+ L D
Sbjct: 19  EEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSD 59

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           +++K AYR  A+K+HPDR+ G  +  AEEKFK    AY+ L D 
Sbjct: 19  DEIKKAYRKLAMKYHPDRNPGDKE--AEEKFKEIKEAYEVLSDP 60

Length = 371

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 187 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
            E++K AYR  ALK+HPD++ G     AEEKFK  + AY+ L D 
Sbjct: 14  DEEIKKAYRKLALKYHPDKNPGDPA--AEEKFKEINEAYEVLSDP 56

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 187 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
            E++K AYR  ALK+HPD++       AEEKFK  + AY+ L D
Sbjct: 14  DEEIKKAYRKLALKYHPDKNPD--DPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K A+R  A+K+HPD+++G+ +  AEEKFK  + AYQ L D
Sbjct: 19  DEIKKAFRKLAIKYHPDKNKGNKE--AEEKFKEINEAYQVLSD 59

Length = 380

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AYR  A K+HPDR++      AEEKFK  + AY+ L D
Sbjct: 15  EEIKKAYRKLAKKYHPDRNK---DKEAEEKFKEINEAYEVLSD 54

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 26/43 (60%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           ED+K A+R  A KWHPD H G +KA AEEKFK  S AY+ L D
Sbjct: 18  EDIKKAFRELAKKWHPDLHPG-NKAEAEEKFKEISEAYEVLSD 59

Length = 365

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K +YR  A+K+HPDR+ G  +  AEE FK  + AY+ L D
Sbjct: 19  EEIKKSYRKLAMKYHPDRNPGDKE--AEELFKEAAEAYEVLSD 59

Length = 366

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 8/64 (12%)

Query: 170 MASDR---QTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQ 226
           MA+ R   + LGL  S    +ED+K AYR  A+K+HPD+   + +  AEEKFK  S AY 
Sbjct: 1   MATTRDYYEILGL--SKDASVEDIKKAYRKLAMKYHPDK---NKEPDAEEKFKEISEAYA 55

Query: 227 SLCD 230
            L D
Sbjct: 56  VLSD 59

Length = 377

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AYR  A+K+HPD++ G   A AE++FK  S AY+ L D
Sbjct: 16  EEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSD 56

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AY+    +WHPDRH  + K  AE+KFK    AY+ L D
Sbjct: 19  EEIKRAYKRLVKEWHPDRHPENRKE-AEQKFKEIQEAYEVLSD 60

Length = 369

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AYR  A+K+HPD+++G+ +  +EEKFK  + AY+ L D
Sbjct: 19  EEIKSAYRKLAIKYHPDKNKGNKE--SEEKFKEATEAYEILRD 59

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           E +K +YR  ALK+HPDR+ G  +  AEEKFKL + AY  L D+
Sbjct: 18  ETIKKSYRKLALKYHPDRNAGDKE--AEEKFKLINEAYGVLSDE 59

Length = 369

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 187 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           ++++K AYR  A+++HPD++ G  +  AEEKFK  + AY  L D
Sbjct: 19  VDEIKKAYRKKAIQYHPDKNPGDKE--AEEKFKEAAEAYDVLSD 60

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AYR  A K+HPD ++      AEEKFK  + AYQ L D
Sbjct: 18  EEIKKAYRRLARKYHPDFNKNPE---AEEKFKEINEAYQVLSD 57

Length = 382

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           E++K AYR  A + HPD + G     AEE+FK  S A+  L D 
Sbjct: 24  EEIKKAYRKLARELHPDANPGDPA--AEERFKAVSEAHDVLSDP 65

Length = 392

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E++K AYR  A K+HPD + G  +  AE+KFK  + AY+ L D
Sbjct: 20  EEIKKAYRRLAKKYHPDLNPGDKE--AEQKFKEINEAYEILSD 60

Length = 386

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AYR  AL++HPDR+  + +  AE+KFK  + AY+ L D
Sbjct: 19  DEIKKAYRKLALQYHPDRNPDNPE--AEQKFKEAAEAYEVLRD 59

Length = 373

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AYR  ALK+HPDR++   +  A EKF   + AY  L D
Sbjct: 17  DEIKSAYRKLALKYHPDRNK---EKGAAEKFAQINEAYAVLSD 56

Length = 371

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 189 DVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           ++K AYR  A ++HPD ++G +K  AEE+FK  S AY  L D
Sbjct: 25  EIKKAYRKLAREYHPDANKGDAK--AEERFKEISEAYDVLSD 64

Length = 389

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSL 228
           +++K AYR  ALK+HPD++  + +  AEE FK  + AY+ L
Sbjct: 18  DEIKKAYRKLALKYHPDKNPDNKE--AEEHFKEVNEAYEVL 56

Length = 397

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AYR  A+K+HPD+++G+ +  AE  FK  + AY+ L D
Sbjct: 18  DEIKKAYRKIAIKYHPDKNKGNKE--AESIFKEATEAYEVLID 58

Length = 365

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AYR  A K+HPD    S +  AEEKFK  S AY  L D
Sbjct: 20  KEIKKAYRKLARKYHPDV---SEEEGAEEKFKEISEAYAVLSD 59

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AYR  A K+HPD ++   +  AE++FK  + AY+ L D
Sbjct: 18  DELKRAYRRLARKYHPDVNK---EPGAEDRFKEINRAYEVLSD 57

Length = 374

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 187 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           L+ +K AYR  A K+HPD    S +  AE +FK  + A++ L D
Sbjct: 18  LKTIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVLSD 58

Length = 306

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AYR  + K+HPD ++   +  A+EKFK  S AY+ L D
Sbjct: 19  DEIKKAYRKLSKKYHPDINK---EEGADEKFKEISEAYEVLSD 58

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           +++K AYR  + K+HPD ++   +  AEEK+K    AY++L D 
Sbjct: 19  DEIKKAYRKLSKKYHPDINK---EPGAEEKYKEVQEAYETLSDP 59

Length = 380

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.8
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK14288	369	chaperone protein DnaJ; Provisional	99.67
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.66
PRK14296	372	chaperone protein DnaJ; Provisional	99.64
PRK14279	392	chaperone protein DnaJ; Provisional	99.63
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.62
PRK14286	372	chaperone protein DnaJ; Provisional	99.61
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.59
PRK14285	365	chaperone protein DnaJ; Provisional	99.59
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PRK14295	389	chaperone protein DnaJ; Provisional	99.58
PRK14282	369	chaperone protein DnaJ; Provisional	99.58
PRK14277	386	chaperone protein DnaJ; Provisional	99.57
PRK14287	371	chaperone protein DnaJ; Provisional	99.57
PRK14297	380	chaperone protein DnaJ; Provisional	99.57
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PRK14301	373	chaperone protein DnaJ; Provisional	99.56
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.56
PRK14278	378	chaperone protein DnaJ; Provisional	99.56
PRK14276	380	chaperone protein DnaJ; Provisional	99.56
PRK14294	366	chaperone protein DnaJ; Provisional	99.55
PRK14283	378	chaperone protein DnaJ; Provisional	99.55
PRK14299	291	chaperone protein DnaJ; Provisional	99.55
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.55
PRK14298	377	chaperone protein DnaJ; Provisional	99.55
PRK14284	391	chaperone protein DnaJ; Provisional	99.55
PRK14281	397	chaperone protein DnaJ; Provisional	99.55
PRK10767	371	chaperone protein DnaJ; Provisional	99.55
PRK14291	382	chaperone protein DnaJ; Provisional	99.54
PRK14280	376	chaperone protein DnaJ; Provisional	99.54
PRK14292	371	chaperone protein DnaJ; Provisional	99.52
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PRK14290	365	chaperone protein DnaJ; Provisional	99.51
PRK14289	386	chaperone protein DnaJ; Provisional	99.5
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.5
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.49
PRK14300	372	chaperone protein DnaJ; Provisional	99.48
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.46
PRK14293	374	chaperone protein DnaJ; Provisional	99.46
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.45
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.42
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.41
PRK05014	171	hscB co-chaperone HscB; Provisional	99.38
PRK01356	166	hscB co-chaperone HscB; Provisional	99.36
PRK03578	176	hscB co-chaperone HscB; Provisional	99.31
PRK00294	173	hscB co-chaperone HscB; Provisional	99.31
PHA03102	153	Small T antigen; Reviewed	99.31
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.29
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.23
PTZ00100	116	DnaJ chaperone protein; Provisional	99.23
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.14
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.06
PRK01773	173	hscB co-chaperone HscB; Provisional	99.05
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.04
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.0
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.98
PHA02624	647	large T antigen; Provisional	98.97
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.77
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.67
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.66
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.32
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.28
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.89
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.71
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.0
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.65
KOG0431	453	consensus Auxilin-like protein and related protein	96.61
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.39
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	90.68
PF13446	62	RPT: A repeated domain in UCH-protein	86.59

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.8e-20  Score=172.02  Aligned_cols=60  Identities=40%  Similarity=0.552  Sum_probs=57.2

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  ++|+++|++|++||+||+||+|+
T Consensus         4 ~dyYeiLGV~k~A--s~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eKR   63 (371)
T COG0484           4 RDYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEKR   63 (371)
T ss_pred             cchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHHH
Confidence            5999999999999  999999999999999999999964  68999999999999999999885

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.5e-18  Score=159.92  Aligned_cols=61  Identities=36%  Similarity=0.466  Sum_probs=58.2

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+|||+||||+++|  +.+|||+|||+||++|||||++++  +.|.++|+.|+.||+||+||.++
T Consensus        15 ~rDfYelLgV~k~A--sd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekR   75 (336)
T KOG0713|consen   15 GRDFYELLGVPKNA--SDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKR   75 (336)
T ss_pred             CCCHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHH
Confidence            37999999999999  999999999999999999999987  78999999999999999999874

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=5.3e-17  Score=152.06  Aligned_cols=60  Identities=42%  Similarity=0.555  Sum_probs=55.7

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  ++|+++|++|++||+||+||.++
T Consensus         3 ~dyY~vLgv~~~A--s~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR   62 (369)
T PRK14288          3 LSYYEILEVEKHS--NQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKR   62 (369)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHH
Confidence            5999999999999  999999999999999999999753  46899999999999999999874

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.66  E-value=2.6e-16  Score=109.79  Aligned_cols=60  Identities=42%  Similarity=0.626  Sum_probs=55.3

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .+||+||||++++  +.++|++||+++++++|||++++. .+.+++.|+.|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~--~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDA--SLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCCC
Confidence            3799999999999  999999999999999999999864 46799999999999999999864

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.2e-16  Score=148.09  Aligned_cols=59  Identities=25%  Similarity=0.347  Sum_probs=55.2

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++   +.|+++|++|++||+||+||.|+
T Consensus         4 ~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR   62 (372)
T PRK14296          4 KDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKR   62 (372)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHh
Confidence            4999999999999  99999999999999999999875   36899999999999999999875

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.6e-16  Score=147.58  Aligned_cols=60  Identities=35%  Similarity=0.479  Sum_probs=56.3

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  +.|+++|++|++||++|+||.|+
T Consensus         9 ~Dyy~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR   68 (392)
T PRK14279          9 KDFYKELGVSSDA--SAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKR   68 (392)
T ss_pred             cCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhh
Confidence            5999999999999  999999999999999999999764  57899999999999999999885

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.62  E-value=1.3e-15  Score=104.39  Aligned_cols=55  Identities=42%  Similarity=0.604  Sum_probs=51.7

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD  230 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsD  230 (235)
                      +||+||||++.+  +.++|+++||+|++++|||+.++.  +.+.+.|+.|++||++|+|
T Consensus         1 ~~y~vLgl~~~~--~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            689999999999  999999999999999999999864  5789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=5.5e-16  Score=145.37  Aligned_cols=60  Identities=40%  Similarity=0.583  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  ++|+++|++|++||+||+||.++
T Consensus         4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR   63 (372)
T PRK14286          4 RSYYDILGVSKSA--NDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKR   63 (372)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHH
Confidence            4999999999999  999999999999999999998754  56899999999999999999874

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.59  E-value=9.5e-16  Score=108.72  Aligned_cols=59  Identities=37%  Similarity=0.549  Sum_probs=54.6

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      +||+||||++++  +.++|+++|+++++++|||+.++.. ..+++.|..|++||++|++|.+
T Consensus         1 ~~y~iLgl~~~~--~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~   59 (64)
T PF00226_consen    1 NPYEILGLPPDA--SDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPER   59 (64)
T ss_dssp             HHHHHCTSTTTS--SHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHH
T ss_pred             ChHHHCCCCCCC--CHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHH
Confidence            589999999999  9999999999999999999988763 4689999999999999999865

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.6e-15  Score=141.88  Aligned_cols=60  Identities=35%  Similarity=0.555  Sum_probs=55.9

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  +.|+++|++|++||++|+||.++
T Consensus         3 ~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr   62 (365)
T PRK14285          3 RDYYEILGLSKGA--SKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKR   62 (365)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchh
Confidence            5999999999999  999999999999999999998764  56889999999999999999875

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=9.4e-16  Score=142.23  Aligned_cols=58  Identities=40%  Similarity=0.534  Sum_probs=54.9

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ...+|+||||.++|  +.+|||+|||+||++|||||+++     +.++|++|..||+||+||+|+
T Consensus         3 ~~~~y~il~v~~~A--s~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr   60 (337)
T KOG0712|consen    3 NTKLYDILGVSPDA--SEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKR   60 (337)
T ss_pred             ccccceeeccCCCc--CHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHH
Confidence            35899999999999  99999999999999999999997     789999999999999999875

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=142.70  Aligned_cols=60  Identities=37%  Similarity=0.517  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  ++|+++|++|++||++|+||.++
T Consensus         9 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r   68 (389)
T PRK14295          9 KDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKR   68 (389)
T ss_pred             cCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhH
Confidence            5999999999999  999999999999999999998754  46899999999999999999864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=141.62  Aligned_cols=61  Identities=34%  Similarity=0.566  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++. ++.|+++|++|++||++|+||.++
T Consensus         4 ~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR   64 (369)
T PRK14282          4 KDYYEILGVSRNA--TQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKR   64 (369)
T ss_pred             CChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhH
Confidence            4999999999999  999999999999999999998753 246899999999999999999874

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.1e-15  Score=142.01  Aligned_cols=60  Identities=37%  Similarity=0.488  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  +.|+++|++|++||++|+||.++
T Consensus         5 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr   64 (386)
T PRK14277          5 KDYYEILGVDRNA--TEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKR   64 (386)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHH
Confidence            5999999999999  999999999999999999999854  56899999999999999999864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.4e-15  Score=141.09  Aligned_cols=59  Identities=36%  Similarity=0.517  Sum_probs=55.0

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||+++.   +.|+++|++|++||++|+||.++
T Consensus         4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR   62 (371)
T PRK14287          4 RDYYEVLGVDRNA--SVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKK   62 (371)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHH
Confidence            4999999999999  99999999999999999999874   46889999999999999999874

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3e-15  Score=140.60  Aligned_cols=60  Identities=38%  Similarity=0.566  Sum_probs=55.9

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||++++.  ++|+++|++|++||++|+||.++
T Consensus         4 ~d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r   63 (380)
T PRK14297          4 KDYYEVLGLEKGA--SDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKK   63 (380)
T ss_pred             CChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhh
Confidence            4999999999999  999999999999999999999764  57899999999999999999875

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.4e-15  Score=143.36  Aligned_cols=64  Identities=28%  Similarity=0.432  Sum_probs=58.4

Q ss_pred             CCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          168 SDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       168 ~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..+..||+||||...+  +..+||++||+|||+||||++++. .++|+++|+.|+.||+||+||..+
T Consensus         5 ~~~~c~YE~L~v~~~a--~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR   68 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDA--DDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQER   68 (508)
T ss_pred             hhhhHHHHHhcccccC--CHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhh
Confidence            3457999999999999  999999999999999999998864 478999999999999999999754

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=3.3e-15  Score=140.18  Aligned_cols=60  Identities=35%  Similarity=0.532  Sum_probs=55.9

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||++++.  ++|+++|++|++||+||+||.++
T Consensus         4 ~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr   63 (373)
T PRK14301          4 RDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKR   63 (373)
T ss_pred             CChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhh
Confidence            5999999999999  999999999999999999999764  56899999999999999999874

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.2e-15  Score=134.58  Aligned_cols=62  Identities=34%  Similarity=0.486  Sum_probs=58.2

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccCC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAVD  235 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~~  235 (235)
                      -.++|+||||++++  +.++||+|||+|+++||||++++.  +++..+|++||.||+||+||.+++
T Consensus        30 ~~~LYdVLgl~k~a--t~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~   91 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTA--TKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRN   91 (279)
T ss_pred             hhHHHHHhCCCccc--chHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhh
Confidence            37999999999999  999999999999999999999986  689999999999999999998863

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=3.6e-15  Score=140.16  Aligned_cols=59  Identities=34%  Similarity=0.399  Sum_probs=55.1

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||++++   ++|+++|++|++||++|+||.++
T Consensus         3 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r   61 (378)
T PRK14278          3 RDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKR   61 (378)
T ss_pred             CCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhh
Confidence            4899999999999  99999999999999999999974   47899999999999999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=3.2e-15  Score=140.49  Aligned_cols=59  Identities=32%  Similarity=0.492  Sum_probs=55.1

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++   +.|+++|++|++||++|+||.++
T Consensus         4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR   62 (380)
T PRK14276          4 TEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKR   62 (380)
T ss_pred             CCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhh
Confidence            5999999999999  99999999999999999999975   35899999999999999999874

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=3.9e-15  Score=139.25  Aligned_cols=60  Identities=37%  Similarity=0.552  Sum_probs=55.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  ++++++|++|++||++|+||.++
T Consensus         4 ~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r   63 (366)
T PRK14294          4 RDYYEILGVTRDA--SEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKR   63 (366)
T ss_pred             CChHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHH
Confidence            5999999999999  999999999999999999999764  46899999999999999999764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=3.8e-15  Score=139.83  Aligned_cols=59  Identities=37%  Similarity=0.457  Sum_probs=55.1

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++   +.|+++|++|++||++|+||.++
T Consensus         5 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR   63 (378)
T PRK14283          5 RDYYEVLGVDRNA--DKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKR   63 (378)
T ss_pred             CChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHH
Confidence            4999999999999  99999999999999999999875   46899999999999999999874

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=4e-15  Score=135.32  Aligned_cols=59  Identities=32%  Similarity=0.432  Sum_probs=54.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||+++.   +.++++|++|++||++|+||.++
T Consensus         4 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr   62 (291)
T PRK14299          4 KDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKR   62 (291)
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHH
Confidence            5999999999999  99999999999999999999874   46899999999999999998763

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.55  E-value=2.6e-15  Score=143.19  Aligned_cols=56  Identities=36%  Similarity=0.445  Sum_probs=52.1

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||+||||+++|  +.+|||+|||+||++||||++++      .++|++|++||++|+||.|+
T Consensus        28 ~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR   83 (421)
T PTZ00037         28 EKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKR   83 (421)
T ss_pred             hhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHH
Confidence            5999999999999  99999999999999999999753      48999999999999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=4.1e-15  Score=139.85  Aligned_cols=59  Identities=42%  Similarity=0.589  Sum_probs=55.0

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||+++.   +.++++|++|++||++|+||.++
T Consensus         5 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR   63 (377)
T PRK14298          5 RDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKR   63 (377)
T ss_pred             CCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhh
Confidence            4999999999999  99999999999999999999874   46889999999999999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=4.4e-15  Score=140.03  Aligned_cols=59  Identities=39%  Similarity=0.595  Sum_probs=55.2

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      |||+||||+++|  +.+|||+|||+||++||||++++.  +.|+++|++|++||++|+||.++
T Consensus         2 d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR   60 (391)
T PRK14284          2 DYYTILGVSKTA--SPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKR   60 (391)
T ss_pred             CHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHH
Confidence            899999999999  999999999999999999999864  56899999999999999999764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=5.3e-15  Score=139.85  Aligned_cols=60  Identities=35%  Similarity=0.531  Sum_probs=55.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||++++.  +.|+++|++|++||++|+||.++
T Consensus         3 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r   62 (397)
T PRK14281          3 RDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKR   62 (397)
T ss_pred             CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhh
Confidence            4999999999999  999999999999999999999764  46889999999999999999864

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=5.9e-15  Score=138.10  Aligned_cols=60  Identities=38%  Similarity=0.581  Sum_probs=55.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||++++.  +.|+++|++|++||++|+||.++
T Consensus         4 ~d~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r   63 (371)
T PRK10767          4 RDYYEVLGVSRNA--SEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKR   63 (371)
T ss_pred             CChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhh
Confidence            4999999999999  999999999999999999999754  46899999999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=5.4e-15  Score=139.09  Aligned_cols=59  Identities=39%  Similarity=0.505  Sum_probs=54.9

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||++++   +.|+++|++|++||++|+||.++
T Consensus         3 ~d~Y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR   61 (382)
T PRK14291          3 KDYYEILGVSRNA--TQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKR   61 (382)
T ss_pred             CCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHH
Confidence            4999999999999  99999999999999999999976   36889999999999999999764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=6.2e-15  Score=138.44  Aligned_cols=59  Identities=36%  Similarity=0.502  Sum_probs=55.0

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.++||+|||+||++||||+++..   .|+++|++|++||++|+||.++
T Consensus         4 ~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kr   62 (376)
T PRK14280          4 RDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKEE---GADEKFKEISEAYEVLSDDQKR   62 (376)
T ss_pred             CChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhccHhHH
Confidence            5999999999999  999999999999999999998753   5899999999999999999874

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.7e-14  Score=135.08  Aligned_cols=60  Identities=37%  Similarity=0.529  Sum_probs=55.7

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      |.|||+||||+++|  +.++||+|||+||++||||+++.   +.|+++|++|++||++|+||.++
T Consensus         1 ~~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r   60 (371)
T PRK14292          1 MMDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKR   60 (371)
T ss_pred             CCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhh
Confidence            46999999999999  99999999999999999999974   46899999999999999999874

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.2e-14  Score=133.00  Aligned_cols=60  Identities=35%  Similarity=0.538  Sum_probs=56.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||.||||+..+  +..+|++|||..|++|||||++++  +.|.++|+.|.+||+||+|+.++
T Consensus         5 ~dyY~lLgi~~~a--t~~eIkKaYr~kaL~~HPDKNp~d--P~A~ekFq~L~eAy~VL~D~~~R   64 (296)
T KOG0691|consen    5 TDYYDLLGISEDA--TDAEIKKAYRKKALQYHPDKNPGD--PQAAEKFQELSEAYEVLSDEESR   64 (296)
T ss_pred             chHHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHH
Confidence            5999999999999  999999999999999999999987  56999999999999999998753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1.7e-14  Score=134.98  Aligned_cols=61  Identities=46%  Similarity=0.620  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++. .++|+++|++|++||++|+||.++
T Consensus         3 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r   63 (365)
T PRK14290          3 KDYYKILGVDRNA--SQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKR   63 (365)
T ss_pred             CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhh
Confidence            5999999999999  999999999999999999998754 246899999999999999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=2.4e-14  Score=134.75  Aligned_cols=60  Identities=35%  Similarity=0.580  Sum_probs=55.7

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||++++.  ++|+++|++|++||++|+||.++
T Consensus         5 ~~~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R   64 (386)
T PRK14289          5 RDYYEVLGVSKTA--TVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKR   64 (386)
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHH
Confidence            5999999999999  999999999999999999999864  57999999999999999999753

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.50  E-value=2.1e-14  Score=131.37  Aligned_cols=59  Identities=31%  Similarity=0.447  Sum_probs=54.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||++.+  +.++||+|||+||++||||+++.   +.++++|++|++||++|+||.++
T Consensus         4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr   62 (306)
T PRK10266          4 KDYYAIMGVKPTD--DLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRR   62 (306)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHH
Confidence            5999999999999  99999999999999999999865   36899999999999999999764

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2e-14  Score=137.31  Aligned_cols=66  Identities=35%  Similarity=0.426  Sum_probs=59.5

Q ss_pred             CCCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHHHHHHHccCCccC
Q 026631          167 ESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       167 ~~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~-~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      +.+..++|.+|||+++|  +.+||++|||++++.|||||+.++. ++.|+++|+.|..||+||+||.++
T Consensus         5 e~~e~e~Ya~LNlpkdA--t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kR   71 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDA--TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKR   71 (546)
T ss_pred             ccchhhHHHHhCCCccc--CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            34446999999999999  9999999999999999999998544 667999999999999999999874

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2e-14  Score=131.15  Aligned_cols=58  Identities=34%  Similarity=0.496  Sum_probs=55.5

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      +||+||||+++|  +..|||+||++||++||||.+.+.   .|+++|++|.+||++|+|++|+
T Consensus        44 d~Y~vLgv~~~A--t~~EIK~Af~~LaKkyHPD~n~~~---~a~~kF~eI~~AYEiLsd~eKR  101 (288)
T KOG0715|consen   44 DYYKVLGVSRNA--TLSEIKSAFRKLAKKYHPDVNKDK---EASKKFKEISEAYEILSDEEKR  101 (288)
T ss_pred             chhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCCc---chhhHHHHHHHHHHHhcCHHHH
Confidence            999999999999  999999999999999999999885   7999999999999999999874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.48  E-value=3e-14  Score=133.63  Aligned_cols=59  Identities=36%  Similarity=0.441  Sum_probs=54.5

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||+++|  +.+|||+|||+||++||||+++.   +.++++|++|++||++|+||.++
T Consensus         3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r   61 (372)
T PRK14300          3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKR   61 (372)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHh
Confidence            5999999999999  99999999999999999999874   35889999999999999999764

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=7.2e-14  Score=115.75  Aligned_cols=63  Identities=46%  Similarity=0.663  Sum_probs=57.1

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+.+||+||||++++  +..+|++|||++|++||||+++.... .++++|+.|++||++|+|+.++
T Consensus         4 ~~~~~y~iLgv~~~a--s~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r   66 (237)
T COG2214           4 DLLDYYEILGVPPNA--SLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERR   66 (237)
T ss_pred             hhhhHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHH
Confidence            457999999999999  99999999999999999999997632 5999999999999999998753

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=5.8e-14  Score=131.73  Aligned_cols=59  Identities=34%  Similarity=0.487  Sum_probs=54.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||++++  +.++||+|||+||++||||+++..   .++++|++|++||++|+||.++
T Consensus         3 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~---~a~~~f~~i~~Ay~vL~~~~~R   61 (374)
T PRK14293          3 ADYYEILGVSRDA--DKDELKRAYRRLARKYHPDVNKEP---GAEDRFKEINRAYEVLSDPETR   61 (374)
T ss_pred             CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc---CHHHHHHHHHHHHHHHhchHHH
Confidence            5899999999999  999999999999999999998753   5889999999999999999864

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.8e-14  Score=125.03  Aligned_cols=62  Identities=31%  Similarity=0.433  Sum_probs=57.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .++|+||||.++|  +..+|++||++|++++|||+++...+.+|.++|+.|+.||+||+|.+++
T Consensus        14 ~d~YevLGVer~a--~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR   75 (264)
T KOG0719|consen   14 KDLYEVLGVERDA--TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKR   75 (264)
T ss_pred             cCHHHHhhhcccC--CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            5999999999999  9999999999999999999998766778999999999999999997653

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=2e-13  Score=119.87  Aligned_cols=62  Identities=32%  Similarity=0.468  Sum_probs=56.3

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ...|||+||||++++  +..|||+|||+|++++||||.+..  ...++.|..|.+||+.|+|++.+
T Consensus        97 ~~fDPyEILGl~pga--s~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sr  158 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGA--SEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSR  158 (230)
T ss_pred             hcCCcHHhhCCCCCC--CHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhH
Confidence            346999999999999  999999999999999999999875  36888999999999999998764

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.41  E-value=1.9e-13  Score=139.87  Aligned_cols=59  Identities=24%  Similarity=0.277  Sum_probs=55.4

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||+||||+++|  +..+||+|||+||++||||+++++   .|.++|+.|.+||++|+||.++
T Consensus       573 ~dYYdILGVs~dA--S~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~kR  631 (1136)
T PTZ00341        573 TLFYDILGVGVNA--DMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDKK  631 (1136)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHHH
Confidence            7999999999999  999999999999999999999864   5888999999999999999874

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.38  E-value=8.3e-13  Score=112.22  Aligned_cols=63  Identities=22%  Similarity=0.272  Sum_probs=55.0

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      +||+||||++.+.++..+|+++||++++++|||+..+..   +..+.+.+..|++||++|+||.++
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~R   67 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKR   67 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHH
Confidence            899999999986568999999999999999999987543   234778999999999999999763

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=7.1e-13  Score=112.27  Aligned_cols=65  Identities=26%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~-~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      |.+||+||||++...++..+|+++||+|++++|||+..... +..+.+.+..|++||++|+||.++
T Consensus         1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~R   66 (166)
T PRK01356          1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKR   66 (166)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            46899999999986569999999999999999999987532 223556789999999999999753

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.31  E-value=4e-12  Score=108.68  Aligned_cols=64  Identities=30%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCh---HHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSK---AVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~---~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||+||||++...++..+|+++||+|++++|||+++....   ..+.+.+..||+||++|+||.++
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~R   72 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKR   72 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhH
Confidence            69999999999876699999999999999999999875432   23566789999999999999764

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.31  E-value=4.2e-12  Score=108.36  Aligned_cols=64  Identities=27%  Similarity=0.279  Sum_probs=56.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||++|||++...++..+|+++||+|++++|||++.+..   +..+.+.+..|++||++|+||.++
T Consensus         4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~R   70 (173)
T PRK00294          4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRR   70 (173)
T ss_pred             CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            5899999999998789999999999999999999987543   344788999999999999999764

>PHA03102 Small T antigen; Reviewed

Probab=99.31  E-value=1.8e-12  Score=108.76  Aligned_cols=58  Identities=28%  Similarity=0.316  Sum_probs=51.3

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...+|+||||+++|-.+.++||+|||++|+++|||++++      +++|++|++||++|+|+.+
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------~e~~k~in~Ay~~L~d~~~   61 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------EEKMKELNTLYKKFRESVK   61 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------hHHHHHHHHHHHHHhhHHH
Confidence            357899999999875589999999999999999999653      4799999999999999865

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.29  E-value=4.2e-12  Score=114.72  Aligned_cols=62  Identities=26%  Similarity=0.374  Sum_probs=54.4

Q ss_pred             CCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CChHHHHHHHHHHHHHHHHccCC
Q 026631          168 SDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQG-----SSKAVAEEKFKLCSAAYQSLCDK  231 (235)
Q Consensus       168 ~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~-----~~~~~a~ekF~~I~eAYevLsDp  231 (235)
                      ..+.++|+||||++++  +.++||+|||+|+++||||+..+     ...+.++++|++|++||++|+..
T Consensus       197 ~~~~~ay~vLgv~~~a--s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        197 PTLEDAYKVLGVSESD--DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CcHHhHHHHcCCCCCC--CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4568999999999999  99999999999999999999643     12356899999999999999864

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.25  E-value=7.2e-12  Score=126.05  Aligned_cols=59  Identities=25%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||+||||++++  +.++||+|||+|+++||||++++   +.+.++|++|++||++|+||.++
T Consensus         2 ~DYYeVLGVs~dA--S~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KR   60 (871)
T TIGR03835         2 RDYYEVLGIDRDA--DEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKR   60 (871)
T ss_pred             CChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999999  99999999999999999999876   46888999999999999998763

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.23  E-value=5.6e-12  Score=118.07  Aligned_cols=64  Identities=33%  Similarity=0.414  Sum_probs=59.1

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHHHHHHHccCCccC
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~-~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .-+|||+||||.++|  +..||.+|||++|++||||..++.+ ++.|+.+|..|..|-+||+||+++
T Consensus       392 ~kRDYYKILGVkRnA--sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkR  456 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNA--SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKR  456 (504)
T ss_pred             ccchHHHHhhhcccc--cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHH
Confidence            347999999999999  9999999999999999999998765 667999999999999999999874

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.23  E-value=1.2e-11  Score=99.41  Aligned_cols=52  Identities=17%  Similarity=0.165  Sum_probs=46.8

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC  229 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLs  229 (235)
                      ..++|+||||++++  +.++|+++||+|++++|||+.+      ..+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~A--s~~eIkkaYRrLa~~~HPDkgG------s~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTA--SKERIREAHKQLMLRNHPDNGG------STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHh
Confidence            36999999999999  9999999999999999999853      2468899999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=2.8e-11  Score=105.15  Aligned_cols=61  Identities=43%  Similarity=0.592  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .++|.||||.+.+  +.++|++||+++|++||||+++.. ...++.+|++|.+||++|+|+.++
T Consensus         3 ~d~~~~l~i~~~a--s~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr   63 (306)
T KOG0714|consen    3 KDYYKILGIARSA--SEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKR   63 (306)
T ss_pred             ccHHHHhCccccc--cHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHh
Confidence            5899999999999  888999999999999999998877 667777999999999999999874

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.4e-10  Score=111.11  Aligned_cols=60  Identities=30%  Similarity=0.378  Sum_probs=56.3

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..|+|.||||++++  +.++||+.||++|+..||||+-.   +.|+|.|+.|+.||++|+|+.++
T Consensus       234 ~~daYsvlGl~~d~--sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR  293 (490)
T KOG0720|consen  234 ILDAYSALGLPSDC--SDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKR  293 (490)
T ss_pred             CCCchhhcCCCCCC--CHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhh
Confidence            68999999999999  99999999999999999999984   57999999999999999998764

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.05  E-value=3.5e-10  Score=96.60  Aligned_cols=65  Identities=23%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      |.|||++|||++...++...|+++|+.|.+++|||+....+   +..+.+.-..||+||++|+||.++
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~R   68 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILR   68 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHH
Confidence            56999999999998789999999999999999999987654   234778889999999999999753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.3e-10  Score=110.44  Aligned_cols=61  Identities=36%  Similarity=0.514  Sum_probs=57.5

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      -.++|.||||...+  +..+||+|||++|+.+|||++.+. +.+++.+|++|-+||.+|+||.+
T Consensus       372 Rkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~k  432 (486)
T KOG0550|consen  372 RKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMK  432 (486)
T ss_pred             hhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHH
Confidence            37999999999999  999999999999999999999886 67899999999999999999876

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2e-10  Score=103.53  Aligned_cols=63  Identities=24%  Similarity=0.344  Sum_probs=56.4

Q ss_pred             CCCCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          166 SESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       166 ~~~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .-+...|.|+||||.+++  +..+|++|||+||+++|||+++++   +..+.|+.|..||++|.|.+.
T Consensus        28 LYCG~enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~~---e~k~~F~~iAtayeilkd~e~   90 (329)
T KOG0722|consen   28 LYCGAENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRDP---ESKKLFVKIATAYEILKDNET   90 (329)
T ss_pred             hcccchhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCCc---hhhhhhhhhhcccccccchhh
Confidence            345568999999999999  999999999999999999999985   466899999999999998653

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.98  E-value=2.4e-10  Score=109.57  Aligned_cols=64  Identities=30%  Similarity=0.413  Sum_probs=58.0

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CChHHHHHHHHHHHHHHHHccCCccC
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQG---SSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~---~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+-|+|+||||..++  +..+||++||+|++|+||||.+.   ..+.+.+++++.|++||..|+|.+.+
T Consensus        96 ~~fDPyEILGI~~~t--s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r  162 (610)
T COG5407          96 RGFDPYEILGIDQDT--SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR  162 (610)
T ss_pred             cCCChHHhhcccCCC--cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            346999999999999  99999999999999999999886   55678999999999999999997653

>PHA02624 large T antigen; Provisional

Probab=98.97  E-value=4.9e-10  Score=111.28  Aligned_cols=58  Identities=26%  Similarity=0.285  Sum_probs=51.5

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ..++|+||||++++-.+.++||+|||++|++||||+.+      .+++|++|++||++|+|+.+
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG------deekfk~Ln~AYevL~d~~k   67 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG------DEEKMKRLNSLYKKLQEGVK   67 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------cHHHHHHHHHHHHHHhcHHH
Confidence            46899999999977558999999999999999999964      35799999999999999765

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.77  E-value=1.3e-08  Score=85.56  Aligned_cols=50  Identities=28%  Similarity=0.414  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          185 LKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       185 ~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ++..+|+++||+|++++|||+.+...   +..+.+.+..|++||++|+||.++
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~R   55 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMR   55 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhh
Confidence            58899999999999999999976543   345889999999999999999864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.67  E-value=3.6e-08  Score=91.82  Aligned_cols=35  Identities=37%  Similarity=0.600  Sum_probs=33.4

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQG  208 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~  208 (235)
                      |||+||||+++|  +.++||+|||+||++||||+++.
T Consensus         1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~   35 (354)
T TIGR02349         1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKD   35 (354)
T ss_pred             ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC
Confidence            699999999999  99999999999999999999973

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.7e-08  Score=87.15  Aligned_cols=61  Identities=23%  Similarity=0.293  Sum_probs=55.7

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCc
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKL  232 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~  232 (235)
                      -..++|+||.|.|..  +.++||+.||+|++..|||+++++ .+.|...|..|..||.+|-|+.
T Consensus        51 fnLNpfeVLqIdpev--~~edikkryRklSilVHPDKN~Dd-~~rAqkAFdivkKA~k~l~n~~  111 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEV--TDEDIKKRYRKLSILVHPDKNPDD-AERAQKAFDIVKKAYKLLENDK  111 (250)
T ss_pred             cccChHHHHhcCCCC--CHHHHHHHHHhhheeecCCCCccc-HHHHHHHHHHHHHHHHHHhCHH
Confidence            348999999999999  999999999999999999999976 3568899999999999998875

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.7e-07  Score=83.39  Aligned_cols=63  Identities=24%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             CccchhhhcCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          169 DMASDRQTLGLCA---SGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       169 ~~~d~YeILGL~~---~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...|+|.+|||+.   -+  +..+|.+|.++.+.+||||+..........+.|++|+.||++|+|+.+
T Consensus        41 k~~DlYa~lgLskyR~ka--~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~  106 (379)
T COG5269          41 KKVDLYALLGLSKYRTKA--IPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKL  106 (379)
T ss_pred             hhhhHHHHhchHhhhcCC--CcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHH
Confidence            3479999999995   34  788899999999999999998432223567899999999999999865

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=9.5e-07  Score=92.00  Aligned_cols=56  Identities=25%  Similarity=0.395  Sum_probs=47.5

Q ss_pred             ccchhhhcCCCCC-CCC-CHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccC
Q 026631          170 MASDRQTLGLCAS-GPL-KLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD  230 (235)
Q Consensus       170 ~~d~YeILGL~~~-a~~-s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsD  230 (235)
                      +.+.|+||.|+-+ .+. ..+.||++|++||++|||||+|.     ..++|..+++||+.|+.
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----GREMFERVNKAYELLSS 1337 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHHHHHHH
Confidence            4789999999853 222 44889999999999999999985     57999999999999983

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=1.8e-05  Score=71.17  Aligned_cols=55  Identities=20%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHH-Hcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQ-SLC  229 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYe-vLs  229 (235)
                      +..+|.||||..++  +.++|+.||..||+++|||.....   ...+.|++|.+||. ||.
T Consensus        46 ~~e~fril~v~e~~--~adevr~af~~lakq~hpdsgs~~---adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   46 IMECFRILGVEEGA--DADEVREAFHDLAKQVHPDSGSEE---ADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             HHHHHHHhcccccC--chhHHHHHHHHHHHHcCCCCCCcc---ccHHHHHHHHHHHHHHHH
Confidence            46799999999999  999999999999999999988753   46688999999998 665

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=6.8e-05  Score=59.79  Aligned_cols=53  Identities=25%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCc
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKL  232 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~  232 (235)
                      ..-.||||.++.  +.+.||.|+|++.+..|||+.+.+      -.-..|++|+++|....
T Consensus        57 EA~lIL~v~~s~--~k~KikeaHrriM~~NHPD~GGSP------YlAsKINEAKdlLe~~~  109 (112)
T KOG0723|consen   57 EAALILGVTPSL--DKDKIKEAHRRIMLANHPDRGGSP------YLASKINEAKDLLEGTS  109 (112)
T ss_pred             HHHHHhCCCccc--cHHHHHHHHHHHHHcCCCcCCCCH------HHHHHHHHHHHHHhccc
Confidence            455899999999  999999999999999999999865      34467999999997543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00057  Score=58.06  Aligned_cols=56  Identities=23%  Similarity=0.359  Sum_probs=48.9

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-----hHHHHHHHHHHHHHHHHc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS-----KAVAEEKFKLCSAAYQSL  228 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~-----~~~a~ekF~~I~eAYevL  228 (235)
                      .+.|.+||+....  ...+|+++|+++...+|||+.....     ...+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~--~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKA--DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhh--hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999  9999999999999999999864322     245899999999999875

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0016  Score=55.23  Aligned_cols=65  Identities=28%  Similarity=0.222  Sum_probs=53.7

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..+||.++|......+.+.-++--|....+++|||+...+.   ...|.+.-..|++||.+|.||.++
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~R   74 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLAR   74 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHH
Confidence            46899999998877778888887899999999999954322   125888999999999999999764

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.61  E-value=0.0027  Score=61.78  Aligned_cols=45  Identities=33%  Similarity=0.467  Sum_probs=35.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCC----hH-HHHHHHHHHHHHHHHcc
Q 026631          185 LKLEDVKLAYRVCALKWHPDRHQGSS----KA-VAEEKFKLCSAAYQSLC  229 (235)
Q Consensus       185 ~s~~eIKkAYRklalk~HPDk~~~~~----~~-~a~ekF~~I~eAYevLs  229 (235)
                      ++.++||+|||+.+|..||||.+...    ++ .+++.|-.+.+|+....
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999987542    12 36777888888887543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.0055  Score=52.06  Aligned_cols=62  Identities=31%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCcc
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      +++.++|+++.+....+.++..|+.+.+.+|||+.....   ...+.+.+..++.||.+|.+|.+
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~   66 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLL   66 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            456677777776667788999999999999999987544   22366789999999999999864

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=90.68  E-value=0.61  Score=38.30  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=34.8

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHcc
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC  229 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLs  229 (235)
                      .+.....||||++..  +.++|.+.|..|-...+|++.+.      .-.--.|..|.+.|.
T Consensus        56 tl~EA~~ILnv~~~~--~~eeI~k~y~~Lf~~Nd~~kGGS------fYLQSKV~rAKErl~  108 (127)
T PF03656_consen   56 TLDEARQILNVKEEL--SREEIQKRYKHLFKANDPSKGGS------FYLQSKVFRAKERLE  108 (127)
T ss_dssp             -HHHHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCcc--CHHHHHHHHHHHHhccCCCcCCC------HHHHHHHHHHHHHHH
Confidence            346888999999977  99999999999999999997653      122234555555543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=86.59  E-value=1.7  Score=30.53  Aligned_cols=29  Identities=14%  Similarity=0.129  Sum_probs=25.7

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCAL  199 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklal  199 (235)
                      ++...|++|||++..  +.+.|-.+|.....
T Consensus         3 ~~~~Ay~~Lgi~~~~--~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    3 DVEEAYEILGIDEDT--DDDFIISAFQSKVN   31 (62)
T ss_pred             CHHHHHHHhCcCCCC--CHHHHHHHHHHHHH
Confidence            346789999999998  99999999988877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		7e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		3e-04
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-04
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-04

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC 229
           MA+  + LG+ AS     ED+K AYR  AL+WHPD++   +K  AE+KFKL S AY+ L 
Sbjct: 8   MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNP-DNKEEAEKKFKLVSEAYEVLS 64
Query: 230 D 230
           D
Sbjct: 65  D 65

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           +D+K AYR  AL+WHPD++   +K  AE+KFK  + AY+ L DK
Sbjct: 17  DDIKKAYRRKALQWHPDKNP-DNKEFAEKKFKEVAEAYEVLSDK 59

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 179 LCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           L  S   +  +++ AY+  A+K+HPDR+QG  +  AE KFK    AY+ L D
Sbjct: 9   LGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLTD 58

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 179 LCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           L  S   +  +++ AY+  A+K+HPDR+QG  +  AE KFK    AY+ L D
Sbjct: 9   LGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLTD 58

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E +K AYR  ALKWHPD++   +K  AE +FK  + AY+ L D
Sbjct: 24  EAIKKAYRKLALKWHPDKNP-ENKEEAERRFKQVAEAYEVLSD 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-11
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-11
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-11
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-10
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-10
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	7e-10
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-09
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-09
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-09
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-09
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-09
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-09
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	5e-09
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	9e-09
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-08
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-08
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	5e-08
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	8e-08
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-08
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-06
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-06
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	9e-06
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-05
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-05
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	6e-05
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	8e-05
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-04
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-04

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           E +K AYR  ALKWHPD++   +K  AE +FK  + AY+ L D 
Sbjct: 24  EAIKKAYRKLALKWHPDKNPE-NKEEAERRFKQVAEAYEVLSDA 66

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           +D+K AYR  AL+WHPD++   +K  AE+KFK  + AY+ L DK
Sbjct: 17  DDIKKAYRRKALQWHPDKNPD-NKEFAEKKFKEVAEAYEVLSDK 59

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           ED+K AYR  AL+WHPD++   +K  AE+KFKL S AY+ L D 
Sbjct: 24  EDIKKAYRKLALRWHPDKNPD-NKEEAEKKFKLVSEAYEVLSDS 66

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 163 SESSESDMASDR---QTLGLC--ASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEK 217
           S S      S       LG+   A+       +K AY      +HPDR+ GS++  A E+
Sbjct: 6   SGSQGDCSYSRTALYDLLGVPSTATQ----AQIKAAYYRQCFLYHPDRNSGSAE--AAER 59

Query: 218 FKLCSAAYQSLCDK 231
           F   S AY  L   
Sbjct: 60  FTRISQAYVVLGSA 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQG-SSKAVAEEKFKLCSAAYQSLCDK 231
           + +  AYR  A K HPDR +    K +AEE+F++ + AY++L D 
Sbjct: 31  QKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 53.0 bits (128), Expect = 7e-10
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           E++K AYR  AL++HPD+++   +  AEEKFK  + AY  L D 
Sbjct: 18  EEIKRAYRRQALRYHPDKNK---EPGAEEKFKEIAEAYDVLSDP 58

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
            +++ AY+  A+K+HPDR+QG  +  AE KFK    AY+ L D 
Sbjct: 18  REIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLTDS 59

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           +D+K +YR  ALK+HPD++  + +  A +KFK  + A+  L D 
Sbjct: 32  DDIKKSYRKLALKYHPDKNPDNPE--AADKFKEINNAHAILTDA 73

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           E +   ++V AL+ HPD+H  + K  A E F+    A + L +
Sbjct: 35  EQILAEFKVRALECHPDKHPENPK--AVETFQKLQKAKEILTN 75

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSL 228
            + K   R   LKWHPD++   +  +A E FK        L
Sbjct: 31  SERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRL 70

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
            ++K AYR  ALK+HPD++         E+FK  S AY+ L D+
Sbjct: 23  NELKKAYRKMALKFHPDKNPD-----GAEQFKQISQAYEVLSDE 61

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           +++K  YR  ALK+HPD+  G       EKFK  S A++ L D 
Sbjct: 23  QELKKGYRKAALKYHPDKPTG-----DTEKFKEISEAFEILNDP 61

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 51.3 bits (123), Expect = 5e-09
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAV----AEEKFKLCSAAYQSLCDK 231
            D+K  Y+   L +HPD+      A       +KF     A++ L ++
Sbjct: 31  SDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 49.9 bits (120), Expect = 9e-09
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
           +++K AY   A K+HPD ++   K  A+EKF   + AY+ L D
Sbjct: 22  KEIKKAYYQLAKKYHPDTNKDDPK--AKEKFSQLAEAYEVLSD 62

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAV----AEEKFKLCSAAYQSLCDK 231
            D+K  Y+   L +HPD+      A       +KF     A++ L ++
Sbjct: 25  SDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
             +K A+   A+K+HPD+++      AE KF+  + AY++L D 
Sbjct: 22  RQIKKAFHKLAMKYHPDKNKSPD---AEAKFREIAEAYETLSDA 62

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           ED+K AYR  ALK+HPD++       A E FK    AY  L + 
Sbjct: 22  EDLKKAYRRLALKFHPDKNHAPG---ATEAFKAIGTAYAVLSNP 62

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           ++V  AYR  A+  HPD+        +E+ FK    A  +L   
Sbjct: 42  DEVNKAYRKLAVLLHPDKCVAPG---SEDAFKAVVNARTALLKN 82

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
            +++ A++  ALK HPD++  +    A   F   + AY+ L D+
Sbjct: 17  REIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDE 58

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
            D+K AY+  A +WHPD+++      AE++F   S AY+ L ++
Sbjct: 32  ADIKKAYKKLAREWHPDKNK---DPGAEDRFIQISKAYEILSNE 72

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 186 KLEDVKLAYRVCALKWHPDRHQG-SSKAVAEEKFKLCSAAYQSLCD 230
           K +++  AYR  AL+WHPD  Q    K  AE+KF   +AA + L D
Sbjct: 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 231
           + +K AYR  A K+HPD  +      AE KFK  + A++ L D+
Sbjct: 43  KTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDE 83

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 168 SDMASDRQ----TLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSA 223
           S M  +       LGL  S    +  ++ AY     ++HPD      K   EEK K  + 
Sbjct: 1   SHMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD------KGGDEEKMKKMNT 54

Query: 224 AYQSLCD 230
            Y+ + D
Sbjct: 55  LYKKMED 61

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSLCDK 231
           E VK  YR   L  HPD+  G   +  A+  F   + A+    ++
Sbjct: 132 EQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 176

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSL 228
           E VK  YR   L  HP +  G   +  A+  F   + A+   
Sbjct: 48  EQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 187 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
             +++ A++  ALK HPD++  +    A   F   + AY+ L D
Sbjct: 35  SREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKD 76

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 175 QTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 230
             LGL  S    +  ++ AY     ++HPD+         EEK K  +  Y+ + D
Sbjct: 15  DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG------DEEKMKKMNTLYKKMED 64

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 188 EDVKLAYRVCALKWHPDRHQGSS-----KAVAEEKFKLCSAAY 225
             V+ +Y+   L  HPD+ Q        K +AE+ F+L   A+
Sbjct: 55  NAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 166 SESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAY 225
           S +D     + L L          ++ AY+  +L  HPD+  G S        +  ++ +
Sbjct: 6   SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK--GGS----HALMQELNSLW 59

Query: 226 QSLCDKL 232
            +   ++
Sbjct: 60  GTFKTEV 66

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 177 LGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCD 230
            GL A   L  + + L ++    ++HPD+    S   +  A ++    + A+Q+L  
Sbjct: 7   FGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.7
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.69
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.69
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.69
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.68
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.68
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.67
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.67
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.67
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.67
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.67
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.65
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.65
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.65
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.64
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.63
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.61
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.59
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.59
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.59
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.59
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.58
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.57
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.56
2guz_A	71	Mitochondrial import inner membrane translocase su	99.56
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.55
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.53
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.53
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.51
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.48
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.42
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.38
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.25
2guz_B	65	Mitochondrial import inner membrane translocase su	98.74
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.24

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.4e-17  Score=123.02  Aligned_cols=64  Identities=38%  Similarity=0.549  Sum_probs=57.7

Q ss_pred             CCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          168 SDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       168 ~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..+.+||+||||++++  +.++||+|||+|+++||||+++.. .+.++++|++|++||++|+||.++
T Consensus         6 ~~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R   69 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQA--SSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKR   69 (82)
T ss_dssp             SSSCCHHHHTTCCTTC--CHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHH
T ss_pred             CCCcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHH
Confidence            3467999999999999  999999999999999999999764 357899999999999999999763

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=121.85  Aligned_cols=61  Identities=31%  Similarity=0.466  Sum_probs=55.6

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...+||+||||++++  +.++||+|||+|+++||||++++.  +.++++|+.|++||++|+||.+
T Consensus         5 ~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~   65 (79)
T 2dn9_A            5 SSGDYYQILGVPRNA--SQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVK   65 (79)
T ss_dssp             CCSCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHH
Confidence            346999999999999  999999999999999999999864  3588999999999999999865

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=125.64  Aligned_cols=59  Identities=25%  Similarity=0.374  Sum_probs=55.0

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||+||||++++  +.++||+|||+|+++||||+++..   .+.++|++|++||++|+||.++
T Consensus        27 ~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~R   85 (90)
T 2ys8_A           27 KDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVAP---GSEDAFKAVVNARTALLKNIKS   85 (90)
T ss_dssp             SSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCCT---THHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCcccc
Confidence            6999999999999  999999999999999999999864   5889999999999999998774

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.8e-17  Score=125.15  Aligned_cols=64  Identities=48%  Similarity=0.708  Sum_probs=57.7

Q ss_pred             CCCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          167 ESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       167 ~~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...+.+||+||||++++  +.++||+|||+|+++||||+++.. .+.++++|++|++||++|+||.+
T Consensus         5 ~~~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~   68 (92)
T 2dmx_A            5 SSGMANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKK   68 (92)
T ss_dssp             CCCCCCHHHHHTCCTTC--CTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCCcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHHH
Confidence            34567999999999999  999999999999999999999864 35789999999999999999865

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-17  Score=122.93  Aligned_cols=60  Identities=32%  Similarity=0.474  Sum_probs=55.7

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...+||+||||++.+  +.++||+|||+|+++||||+++.   +.++++|++|++||++|+||.+
T Consensus         5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~   64 (88)
T 2ctr_A            5 SSGSYYDILGVPKSA--SERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANR   64 (88)
T ss_dssp             CCCSHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHH
T ss_pred             CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHH
Confidence            446999999999999  99999999999999999999985   5789999999999999999975

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-17  Score=125.66  Aligned_cols=60  Identities=32%  Similarity=0.416  Sum_probs=55.5

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ..+||+||||++++  +.++||+|||+|+++||||++++.  +.+.++|++|++||++|+||.+
T Consensus        16 ~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~   75 (99)
T 2yua_A           16 RTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATL   75 (99)
T ss_dssp             SSHHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHHH
T ss_pred             ccCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHH
Confidence            46999999999999  999999999999999999999764  4689999999999999999875

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.67  E-value=4e-17  Score=125.79  Aligned_cols=61  Identities=44%  Similarity=0.650  Sum_probs=56.1

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      |.+||+||||++++  +.++||+|||+|+++||||+++.. .+.++++|++|++||++|+||.+
T Consensus         1 M~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~~   61 (99)
T 2lgw_A            1 MASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHK   61 (99)
T ss_dssp             CCCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHHH
Confidence            56999999999999  999999999999999999999864 35789999999999999999865

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3.7e-17  Score=119.82  Aligned_cols=60  Identities=35%  Similarity=0.490  Sum_probs=55.4

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...+||+||||++++  +.++||+|||+|++++|||+++.   +.+.++|+.|++||++|+||.+
T Consensus         5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~   64 (78)
T 2ctp_A            5 SSGDYYEILGVSRGA--SDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEK   64 (78)
T ss_dssp             CSCCHHHHHTCCTTC--CHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHH
Confidence            346999999999999  99999999999999999999975   4689999999999999999865

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.67  E-value=2.4e-17  Score=124.47  Aligned_cols=64  Identities=22%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHHHHHHHHHHccCCccC
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS----KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~----~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ...+||+||||++++  +.++||+|||+|+++||||+++...    .+.++++|++|++||++|+||.++
T Consensus        14 ~~~~~y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R   81 (94)
T 1wjz_A           14 LKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK   81 (94)
T ss_dssp             SCSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred             CCCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHH
Confidence            347999999999999  9999999999999999999987421    356899999999999999999763

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.67  E-value=3.6e-17  Score=119.56  Aligned_cols=58  Identities=43%  Similarity=0.588  Sum_probs=54.1

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .+||+||||++++  +.++||+|||+|++++|||+++..   .+.+.|+.|++||++|+||.+
T Consensus         3 ~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~~   60 (77)
T 1hdj_A            3 KDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPRK   60 (77)
T ss_dssp             CCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCT---THHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCHHH
Confidence            4899999999999  999999999999999999999864   588999999999999999865

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.3e-17  Score=127.71  Aligned_cols=62  Identities=26%  Similarity=0.349  Sum_probs=56.5

Q ss_pred             CCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          168 SDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       168 ~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ....+||+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.+
T Consensus        17 ~~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~   78 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELS--SVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEES   78 (112)
T ss_dssp             CCCCCHHHHTTCCTTS--CHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHHH
T ss_pred             cCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHH
Confidence            3457999999999999  999999999999999999999854  3689999999999999999875

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=6.8e-17  Score=121.34  Aligned_cols=59  Identities=31%  Similarity=0.518  Sum_probs=54.8

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ..+||+||||++.+  +.++||+|||+|+++||||+++..   .++++|++|++||++|+||.+
T Consensus        16 ~~d~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~   74 (88)
T 2cug_A           16 DFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKDP---GAEDRFIQISKAYEILSNEEK   74 (88)
T ss_dssp             SSCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCCST---THHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCh---hHHHHHHHHHHHHHHHCCHHH
Confidence            36999999999999  999999999999999999999864   588999999999999999865

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1.3e-16  Score=124.59  Aligned_cols=60  Identities=35%  Similarity=0.452  Sum_probs=55.7

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ..+||+||||++++  +.++||+|||+|+++||||++++.  +.+.++|++|++||++|+||.+
T Consensus        16 ~~~~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~   75 (109)
T 2ctw_A           16 GESLYHVLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATK   75 (109)
T ss_dssp             SCCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHHH
Confidence            36999999999999  999999999999999999999864  5789999999999999999875

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.65  E-value=6e-17  Score=122.78  Aligned_cols=63  Identities=22%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             CCCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCc
Q 026631          167 ESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKL  232 (235)
Q Consensus       167 ~~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~  232 (235)
                      .....++|+||||++++  +.++||+|||+|+++||||++++. .+.++++|++|++||++|++..
T Consensus        12 ~~~~~~~y~vLgv~~~a--s~~eIKkaYrkla~~~HPDk~~~~-~~~a~~~F~~I~~AYevL~~~~   74 (88)
T 1iur_A           12 GSILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQA   74 (88)
T ss_dssp             SSCHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhc
Confidence            34457999999999999  999999999999999999998864 3568999999999999999854

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.64  E-value=9.8e-17  Score=116.31  Aligned_cols=56  Identities=36%  Similarity=0.547  Sum_probs=52.3

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .+||+||||++++  +.++||+|||+|++++|||++++.     .++|++|++||++|+||.+
T Consensus         8 ~~~y~iLgl~~~a--~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~~   63 (73)
T 2och_A            8 TGYYDVLGVKPDA--SDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEKK   63 (73)
T ss_dssp             CCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHHH
Confidence            5999999999999  999999999999999999999763     5789999999999999875

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.63  E-value=5.8e-17  Score=125.01  Aligned_cols=59  Identities=36%  Similarity=0.580  Sum_probs=54.5

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .+||+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.+
T Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~   61 (103)
T 1bq0_A            3 QDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQK   61 (103)
T ss_dssp             CCSTTTTSSCSSC--CHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSHH
T ss_pred             CCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHH
Confidence            5899999999999  999999999999999999999864  3588999999999999999975

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.6e-16  Score=119.20  Aligned_cols=56  Identities=38%  Similarity=0.564  Sum_probs=52.2

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .+||+||||++.+  +.++||+|||+|+++||||++++.     .++|++|++||++|+||.+
T Consensus         8 ~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~~   63 (92)
T 2o37_A            8 TKLYDLLGVSPSA--NEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQK   63 (92)
T ss_dssp             CHHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHHH
Confidence            6899999999999  999999999999999999999764     4699999999999999875

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=9.8e-16  Score=125.72  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHHHHHHHHHHccCCccC
Q 026631          168 SDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS----KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       168 ~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~----~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ....+||+||||++++  +.++||+|||+|++++|||+++...    ++.+.++|+.|++||++|+||.++
T Consensus         7 ~~~~~~y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R   75 (155)
T 2l6l_A            7 MPKKDWYSILGADPSA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETK   75 (155)
T ss_dssp             CCCSHHHHHHTCCTTC--CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred             CCCCChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3457999999999999  9999999999999999999998653    245789999999999999999764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.59  E-value=5.1e-16  Score=130.21  Aligned_cols=60  Identities=25%  Similarity=0.389  Sum_probs=55.3

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      +.+||+||||++++  +.++||+|||+|+++||||++++.  +.+.++|+.|++||++|+||.+
T Consensus         1 ~~~~y~~l~~~~~a--~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~~   60 (210)
T 3apq_A            1 IQNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL   60 (210)
T ss_dssp             CCCHHHHHTCCTTC--CHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHHH
Confidence            46899999999999  999999999999999999999764  3688999999999999999875

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.59  E-value=3.7e-16  Score=119.69  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=52.3

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHHHHHHHccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSK-AVAEEKFKLCSAAYQSLCD  230 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~-~~a~ekF~~I~eAYevLsD  230 (235)
                      .++|++|||++.+  +.++||+|||++|++||||++++... ..|+++|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            3789999999999  99999999999999999999986532 3589999999999999975

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.59  E-value=6.6e-16  Score=120.05  Aligned_cols=64  Identities=31%  Similarity=0.473  Sum_probs=56.7

Q ss_pred             CccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHHHHccCCcc
Q 026631          169 DMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQG-SSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       169 ~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~-~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ...+||+||||++++ ++.++||+|||+|++++|||++++ ...+.++++|++|++||++|+||.+
T Consensus        13 ~~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~   77 (109)
T 2qsa_A           13 GLENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA   77 (109)
T ss_dssp             TTSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHH
Confidence            347999999999986 589999999999999999999985 2345689999999999999999875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.58  E-value=3.8e-16  Score=115.73  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             ccchhhhcCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCAS--GPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~--a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ..++|+||||+++  +  +.++||+|||+|++++|||+++.      .++|++|++||++|+|+.+
T Consensus        10 ~~~~y~iLgl~~~~~a--~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~~   67 (79)
T 1faf_A           10 KERLLELLKLPRQLWG--DFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVY   67 (79)
T ss_dssp             HHHHHHHHTCCSSSTT--CHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHHH
Confidence            4689999999999  8  99999999999999999999754      4789999999999998754

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.56  E-value=5.3e-16  Score=121.26  Aligned_cols=60  Identities=23%  Similarity=0.225  Sum_probs=52.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--C---hHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGS--S---KAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~--~---~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .+||+|||++. +  +.++||+|||+|+++|||||+++.  .   +..|+++|+.|++||++|+|+..
T Consensus        41 ~d~Y~vl~~~~-A--s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           41 SGWKPVPLMDM-I--EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             SCCCCCCGGGS-C--SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHcCCCC-C--CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            59999999996 8  999999999999999999998631  1   23579999999999999999864

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.6e-15  Score=110.05  Aligned_cols=56  Identities=20%  Similarity=0.058  Sum_probs=50.1

Q ss_pred             ccchhhhcCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCA-SGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~-~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      +.++|+||||++ ++  +.++||+|||+|++++|||+++.      .++|++|++||++|+++..
T Consensus        13 ~~~~y~iLgl~~~~a--~~~eIk~ayr~l~~~~HPDk~g~------~~~f~~i~~Aye~L~~~~~   69 (71)
T 2guz_A           13 SKEALQILNLTENTL--TKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRGI   69 (71)
T ss_dssp             HHHHHHHTTCCTTTC--CHHHHHHHHHHHHHHHCGGGTCC------HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHhhhhh
Confidence            469999999999 68  99999999999999999999643      4699999999999998754

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.55  E-value=4.1e-16  Score=123.40  Aligned_cols=57  Identities=26%  Similarity=0.271  Sum_probs=51.7

Q ss_pred             ccchhhhcCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKL--EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~--~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..++|+||||++.+  +.  ++||+|||+||+++|||++++      +++|++|++||++|+||.++
T Consensus         7 ~~~~Y~iLgv~~~a--s~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R   65 (114)
T 1gh6_A            7 SLQLMDLLGLERSA--WGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKY   65 (114)
T ss_dssp             HHHHHHHTTCCTTS--CSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHS
T ss_pred             hhhHHHHcCCCCCC--CcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHH
Confidence            36899999999999  66  999999999999999999875      36899999999999998764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.53  E-value=3.6e-15  Score=125.17  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=56.4

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      +||+||||++++.++..+||+|||+|+++||||++++..   +..+.++|+.|++||++|+||.++
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R   67 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMR   67 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            799999999998889999999999999999999998654   234778999999999999999753

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.53  E-value=3.1e-15  Score=127.35  Aligned_cols=62  Identities=23%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSK-AVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~-~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .++|+||||++.+  +.++||+|||+|+++||||++++... ..|+++|++|++||++|+||.++
T Consensus       117 ~d~Y~vLgv~~~A--s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR  179 (182)
T 1n4c_A          117 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK  179 (182)
T ss_dssp             CCCCCCCCGGGGS--SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cchhhcCCCCCCC--CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhh
Confidence            4899999999999  99999999999999999999986542 24899999999999999998775

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.51  E-value=8.9e-15  Score=126.38  Aligned_cols=65  Identities=20%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..+||+||||++.+.++.++||+|||+|+++||||++++..   +..+.++|+.|++||++|+||.++
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R  109 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSR  109 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            36999999999975449999999999999999999998653   234788999999999999999763

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.48  E-value=3e-15  Score=137.22  Aligned_cols=60  Identities=33%  Similarity=0.439  Sum_probs=0.0

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      +.+||+||||+++|  +.++||+|||+||++||||++++.   .|+++|++|++||++|+||.++
T Consensus        27 ~~d~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~---~a~~~f~~i~~Ay~vL~d~~~R   86 (329)
T 3lz8_A           27 LKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEN---DAEAKFKDLAEAWEVLKDEQRR   86 (329)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCCCCCCCh---HHHHHHHHHHHHHHHhhhhhhh
Confidence            47999999999999  999999999999999999998763   6899999999999999999874

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.42  E-value=1.3e-14  Score=122.69  Aligned_cols=57  Identities=25%  Similarity=0.278  Sum_probs=48.5

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .++|+||||++++..+.++||+|||+||+++|||++++.      ++|++|++||++|+||.+
T Consensus        11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~------e~F~~I~~AYevLsdp~k   67 (174)
T 2pf4_E           11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVK   67 (174)
T ss_dssp             HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC------TTTTHHHHHHHHHHHHHH
T ss_pred             ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH------HHHHHHHHHHHHhCCHHH
Confidence            699999999999922379999999999999999998763      689999999999999875

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.38  E-value=7.4e-14  Score=118.34  Aligned_cols=61  Identities=21%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CCCccchhhhc------CCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          167 ESDMASDRQTL------GLCA-SGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       167 ~~~~~d~YeIL------GL~~-~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ...+.+||+||      |+++ ++  +.++||+|||+|+++||||++++     +.++|+.|++||++|+||.++
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~~~a--~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R   74 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPIWTI--DQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRR   74 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCCSCC--CHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHH
T ss_pred             CCCCCCHHHHhccccccCCCCCCC--CHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHH
Confidence            34567999999      4665 67  99999999999999999999986     567899999999999999753

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.25  E-value=4.7e-13  Score=131.77  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=33.4

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .+||+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.++
T Consensus        21 ~~~y~~lg~~~~a--~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~~r   80 (780)
T 3apo_A           21 QNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLR   80 (780)
T ss_dssp             --CHHHHTCCTTC--CHHHHHHHHCC-------------------------CTHHHHHHSHHHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChHHH
Confidence            6999999999999  999999999999999999998754  46889999999999999998753

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.74  E-value=6.4e-09  Score=74.67  Aligned_cols=51  Identities=8%  Similarity=-0.057  Sum_probs=44.6

Q ss_pred             cchhhhcCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHcc
Q 026631          171 ASDRQTLGLCAS---GPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC  229 (235)
Q Consensus       171 ~d~YeILGL~~~---a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLs  229 (235)
                      ...|.||||++.   +  +.++|+++||+|....|||+.+.      ......|++|+++|.
T Consensus         4 ~EA~~ILgv~~~~~~a--~~~~Ik~~yr~Lm~~nhPDkGGS------~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            4 DESCKILNIEESKGDL--NMDKINNRFNYLFEVNDKEKGGS------FYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHTTCCGGGTCC--SHHHHHHHHHHHHHHTCGGGTCC------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcC--CHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHH
Confidence            467899999998   8  99999999999999999999754      366788899998885

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.73  E-value=6.4e-09  Score=91.62  Aligned_cols=62  Identities=35%  Similarity=0.460  Sum_probs=56.0

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~-~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .++|.+||+...+  +.++|+++|+++++++|||+.+... ++.++++|+.|.+||++|+||.++
T Consensus       382 ~~~y~~lg~~~~~--~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          382 RDYYKILGVKRNA--KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             CCSGGGSCSSTTC--CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             hhHHHHhCCCccC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            3899999999999  9999999999999999999987642 356899999999999999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.24  E-value=0.5  Score=45.58  Aligned_cols=45  Identities=20%  Similarity=0.177  Sum_probs=34.9

Q ss_pred             cchhhhcCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 026631          171 ASDRQTLGLCASGPLKL--EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQS  227 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~--~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYev  227 (235)
                      .+||.|||++.+.  ..  .+|++|||+||+..+++          .+++..|..|+.|
T Consensus       629 ~~~~~~lG~~~~~--~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          629 ASTNHILGFPFTS--HGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV  675 (681)
T ss_dssp             CSSSEETTEESSH--HHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCCh--HHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence            4599999997665  33  66999999999965443          4688888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-04
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-04
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	0.004

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 188 EDVKLAYRVCALKWHPDRHQGS-SKAVAEEKFKLCSAAYQSLCDK 231
           E VK  YR   L  HPD+  G   +  A+  F   + A+    ++
Sbjct: 48  EQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 175 QTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAE---EKFKLCSAAYQSLCDK 231
              GL A   L  + + L ++    ++HPD+    S+A      ++    + A+Q+L   
Sbjct: 5   TLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHP 64

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 166 SESDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAY 225
           S +D     + L L          ++ AY+  +L  HPD+        +    +  ++ +
Sbjct: 6   SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQELNSLW 59

Query: 226 QSLCDKL 232
            +   ++
Sbjct: 60  GTFKTEV 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.75
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.68
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.67
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.62
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.6
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.6
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.5

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.1e-19  Score=128.02  Aligned_cols=60  Identities=35%  Similarity=0.559  Sum_probs=55.3

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||++++  +.++||+|||+|+++||||++++.  +.+++.|+.|++||+||+||.++
T Consensus         3 ~dyY~vLgv~~~A--s~~eIk~aYr~l~~~~HPDk~~~~--~~~~~~f~~i~~Ay~vL~d~~~R   62 (75)
T d1xbla_           3 QDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKR   62 (75)
T ss_dssp             CCTTTTTCCSSSC--CHHHHHHHHHHHHHHTCCTTCTTT--CHHHHHHHHHHHHHHHTTSSHHH
T ss_pred             CCHHHHcCCCCCc--CHHHHHHHHHHHHhhhhhhccCCC--hHHHHHHHHHHHHHHhcCCHHHH
Confidence            4899999999999  999999999999999999999865  46888999999999999999763

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9.5e-18  Score=126.62  Aligned_cols=62  Identities=23%  Similarity=0.304  Sum_probs=56.1

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS----KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~----~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||++++  +.++||+||++|+++||||+++...    .+.++++|++|++||++|+||.++
T Consensus        16 ~d~Y~iLgv~~~a--s~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R   81 (94)
T d1wjza_          16 KDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK   81 (94)
T ss_dssp             SCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred             cChHHHcCCCCCc--CHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            6999999999999  9999999999999999999987543    356889999999999999999763

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.67  E-value=3.3e-18  Score=132.87  Aligned_cols=59  Identities=24%  Similarity=0.254  Sum_probs=52.9

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      ..++|+||||+++|..+.++||+|||+||++||||++++.      ++|++|++||+||+||.++
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~------e~F~~I~~AY~vLsd~~kR   65 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKY   65 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT------TTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH------HHHHHHHHHHHHhCCHHHH
Confidence            3689999999999866789999999999999999998754      5799999999999998663

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.8e-17  Score=118.73  Aligned_cols=59  Identities=42%  Similarity=0.567  Sum_probs=54.6

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .|||+||||++++  +.++|++||+++++++|||++..+   .+.++|+.|++||+||+||.++
T Consensus         3 kdyY~iLgv~~~a--s~~eIk~ay~~l~~~~hPD~~~~~---~~~~~~~~i~~Ay~vLsdp~~R   61 (77)
T d1hdja_           3 KDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPRKR   61 (77)
T ss_dssp             CCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCT---THHHHHHHHHHHHHHTTCHHHH
T ss_pred             CChHHHcCCCCCc--CHHHHHHHHHHHHHHhccccccch---hHHHHHHHHHHHHHHhcCHHHH
Confidence            4899999999999  999999999999999999999875   4788999999999999999763

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1e-16  Score=115.93  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=55.3

Q ss_pred             chhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHHHHHHHccCCccC
Q 026631          172 SDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS---KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       172 d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~---~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      |||+||||++.+.++.++|++|||++++++|||+..+..   +..+++.|+.|++||++|+||.++
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R   67 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMR   67 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            799999999987567999999999999999999987544   345889999999999999999763

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-16  Score=118.10  Aligned_cols=63  Identities=22%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             CCccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          168 SDMASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       168 ~~~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      .-+.++|+||||..++  +.++||+|||+|+++||||++++. ...|+++|+.|++||++|.++..
T Consensus        13 ~~~~~~y~iL~v~~~a--s~~eIKkAYrrl~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~~~~~   75 (88)
T d1iura_          13 SILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             SCHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhccccccch-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            3457999999999999  999999999999999999999875 45799999999999999987654

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.60  E-value=1.2e-16  Score=117.55  Aligned_cols=58  Identities=14%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             ccchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHccCCcc
Q 026631          170 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKLA  233 (235)
Q Consensus       170 ~~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~~~~a~ekF~~I~eAYevLsDp~k  233 (235)
                      ..++|+||||++++.++.++||+|||+++++||||+++.      +++|++|++||++|.|+.+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------~e~~~~in~Ay~~L~d~~~   67 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVY   67 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------HHHHHHHHHHHHHHCCHHH
Confidence            368999999999987799999999999999999999754      4789999999999999864

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=4.3e-15  Score=112.85  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=55.8

Q ss_pred             cchhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHHHHHHHccCCccC
Q 026631          171 ASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSS-KAVAEEKFKLCSAAYQSLCDKLAV  234 (235)
Q Consensus       171 ~d~YeILGL~~~a~~s~~eIKkAYRklalk~HPDk~~~~~-~~~a~ekF~~I~eAYevLsDp~k~  234 (235)
                      .++|.+|||...+  +.++||+|||++++++|||++++.. ...+++.|+.|++||++|+||.++
T Consensus        33 ~~~y~~Lgl~~~~--t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R   95 (98)
T d1nz6a_          33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK   95 (98)
T ss_dssp             CCSCCCCCGGGCC--SHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCCeecCCCccC--CHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            4679999999999  9999999999999999999987544 355889999999999999999875