Citrus Sinensis ID: 026765

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---

MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE

cccccEEEEEccccEEccccccEEEEEEcccccEEEEccccccEEEEEccccccccEEccccccccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccCEEEEcccccCEEEEEEcccccEEEEECccccEEEEEccccccEEEEccccccEEEEEEcccccEEEEECccccEEEEEccccEEEccccccc

*GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT***

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
THO complex subunit 3	Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.	probable	Q29RH4
THO complex subunit 3	Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.	probable	Q96J01
THO complex subunit 3	Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.	probable	Q8VE80

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SFZ, chain A
Confidence level:very confident
Coverage over the Query: 10-232
View the alignment between query and template
View the model in PyMOL