Citrus Sinensis ID: 026765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Secondary Structure (PSIPRED)
cccccEEEEEccccEEccccccEEEEEEcccccEEEEccccccEEEEEccccccccEEccccccccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEccccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccHHHHHHHHcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
mgessipfknlhsreytghkkkvhsvawnctgtklasgsvdqtarvwhiephghgkvkdielrghadsvdqlcwdpkhaDLIATASgdktvrlwdarsgkcsqqaelsgeninitykpdgthiavgnrddeltildvrkfkpihrrkfgyeVNEIAWNMTGEMFFLTtgngtvevltypslrpldtvVAHTAGCyciaidpmgryfavgsADSLVSLWDISEMLCVRTFTKLE
Flexible Loop (DISEMBL)
mgessipfknlhsreytghkKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKcsqqaelsgeninitykpdgthiavgnrddeltildvrkfkpihrrkfgyEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Low Complexity Region (SEG)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Disordered region (IsUnstruct)
*******************KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC*****LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT***
Disordered Region (DISOPRED)
*GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT***
Disordered Region (DISEMBL)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Disordered Region (DISPRO)
*GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q29RH4	351	THO complex subunit 3 OS=	yes	no	0.939	0.623	0.533	1e-69
Q8VE80	351	THO complex subunit 3 OS=	yes	no	0.939	0.623	0.533	2e-69
Q96J01	351	THO complex subunit 3 OS=	yes	no	0.939	0.623	0.533	2e-69
P14197	478	WD repeat-containing prot	yes	no	0.961	0.468	0.372	3e-48
Q9USL1	309	Uncharacterized WD repeat	yes	no	0.987	0.744	0.346	2e-38
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.879	0.134	0.347	3e-23
Q00808	1356	Vegetative incompatibilit	yes	no	0.922	0.158	0.292	5e-20
P93107	606	Flagellar WD repeat-conta	N/A	no	0.832	0.320	0.311	1e-19
Q8K450	639	Sperm-associated antigen	no	no	0.905	0.330	0.291	3e-18
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.884	0.163	0.283	7e-18

>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1

 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 155/221 (70%), Gaps = 2/221 (0%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.
Bos taurus (taxid: 9913)

>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 155/221 (70%), Gaps = 2/221 (0%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Mus musculus (taxid: 10090)

>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 155/221 (70%), Gaps = 2/221 (0%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.

Homo sapiens (taxid: 9606)

>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum GN=AAC3 PE=2 SV=2

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 140/247 (56%), Gaps = 23/247 (9%)

Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---------- 57
           F    ++++ G+KKK  SVAWN  GTK+AS   D   RVW+ +P G+             
Sbjct: 153 FSECSTKDFIGNKKKSTSVAWNANGTKIASSGSDGIVRVWNFDPLGNSNNNNNSNNTSSN 212

Query: 58  -------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110
                  + IEL+GH  S++++ W PK+ DL+A+A  DK +++WD + GKC      + E
Sbjct: 213 SKNNNIKETIELKGHDGSIEKISWSPKNNDLLASAGTDKVIKIWDVKIGKCIGTVSTNSE 272

Query: 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTG 169
           NI++ + PDG  I    RDD L ++D+   K +   KF G E+N++ W+  G++  +   
Sbjct: 273 NIDVRWSPDGQFIVACTRDDHLALIDLPTIKTLKIYKFNGEELNQVGWDNNGDLILMANS 332

Query: 170 NGTVEVLTY-----PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224
            G +E   +       ++ L T+  HTA  YC+  DP G+Y A GSADS+VSLWDI +M+
Sbjct: 333 MGNIEAYKFLPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMM 392

Query: 225 CVRTFTK 231
           CV+TF K
Sbjct: 393 CVKTFIK 399

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18B5.10c PE=4 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 133/231 (57%), Gaps = 1/231 (0%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           ES   F  L +R+  G +  + S+ WN +G++LAS S   +  VW+ +        ++  
Sbjct: 7   ESLPKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGN 66

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           RG+   V+QL WDP H+D +      K +R WD RS K   + E + ENI  T+ P G +
Sbjct: 67  RGYG-LVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYENIYATWSPSGNY 125

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
               +RDD L+ +D R+ + +   +   E NE  W+ + ++FF+TTG GTV+++ +PSL+
Sbjct: 126 CCASSRDDMLSFIDARERRIMETFQQPCETNECCWSFSEDLFFMTTGLGTVQIMEWPSLK 185

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
            +  + AH + C+CI   P  R+ A+G AD++ SLWD  E++C R+ T+++
Sbjct: 186 RVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMD 236

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 11/216 (5%)

Query: 18   GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
            GH   V++VA++  G  LASGS DQT R+W I       +    L+GH   V+ + ++P 
Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYI----LQGHTSWVNSVVFNPD 1211

Query: 78   HADLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTIL 135
             + L A+ S D+TVRLW+  S KC  + Q   S  N ++ + PDG+ +A G+ D  + + 
Sbjct: 1212 GSTL-ASGSSDQTVRLWEINSSKCLCTFQGHTSWVN-SVVFNPDGSMLASGSSDKTVRLW 1269

Query: 136  DVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            D+   K +H  + G+   VN +A+N  G M    +G+ TV +    S + L T   HT+ 
Sbjct: 1270 DISSSKCLHTFQ-GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW 1328

Query: 194  CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
               +   P G   A GS D  V LW IS   C+ TF
Sbjct: 1329 VSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTF 1364

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 10   NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
            N  ++   GH   V SVA++  G ++ASGS D+T ++W     G G      L GH  SV
Sbjct: 831  NACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDT-ASGTGTQT---LEGHGGSV 886

Query: 70   DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNR 128
              + + P   + +A+ S DKT+++WDA SG C+Q  E  G  + ++ + PDG  +A G+ 
Sbjct: 887  WSVAFSPDR-ERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSD 945

Query: 129  DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
            D  + I D          +  G  V  +A++  G+     +G+ T+++    S     T+
Sbjct: 946  DHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTL 1005

Query: 188  VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
              H    + +A  P G+  A GS D  + +WD +   C +T 
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTL 1047

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 15/209 (7%)

Query: 16  YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
           +T HK+ + SV ++  G  +ASGS+D T R+W + P G  +   + LRGH DSV+ L W 
Sbjct: 406 FTDHKQAIWSVRFHHLGEVVASGSLDHTVRLWDL-PAGKCR---MALRGHVDSVNDLAWQ 461

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQ-----QAELSGENINITYKPDGTHIAVGNRDD 130
           P  + L ATAS DKTV +WDAR+G C+Q     Q   +G + NI     GT +A  + D 
Sbjct: 462 PFSSSL-ATASSDKTVSVWDARAGLCTQTYYGHQNSCNGVSFNIL----GTQLASTDADG 516

Query: 131 ELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
            + + D R    +     G +  N+  ++ +G++  +   +G V+  +         +  
Sbjct: 517 VVKLWDTRMTAEVATINTGKHPANKSCFDRSGQVLAVACDDGKVKAYSTTDGVLQAELAG 576

Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLW 218
           H      +  DP G+Y     +D+   LW
Sbjct: 577 HEDAVQAVLFDPAGQYLVSCGSDNTFRLW 605

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8K450|SPG16_MOUSE Sperm-associated antigen 16 protein OS=Mus musculus GN=Spag16 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 12/223 (5%)

Query: 2   GESSIPFKNLHSREYT----GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV 57
           G+S+I   +L+  E T    GH   V S  W+  G  +AS S+D T+++W +    + + 
Sbjct: 422 GDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDV----NSER 477

Query: 58  KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITY 116
               L GH DSV+ + + P  ++++ TAS DKT+ +WDAR+GKC Q       ++N  T+
Sbjct: 478 CRYTLYGHTDSVNSIEFFP-FSNILLTASADKTLSVWDARTGKCEQSLYGHMHSVNDATF 536

Query: 117 KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-NEIAWNMTGEMFFLTTGNGTVEV 175
            P G  IA  +      + D RK  PI     G    NE+ ++ +G +    + NG + +
Sbjct: 537 TPRGHIIASCDARGVTKLWDFRKLIPIVSIDVGPSSGNEVNFDQSGRVLAQASANGIIHL 596

Query: 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218
           L   S + +  +V H +  + +    +G     G +D  + LW
Sbjct: 597 LDLKSGQ-IHKLVGHESEVHSVVFSHLGENLYSGGSDGTIRLW 638

Necessary for sperm flagellar function. Plays a role in motile ciliogenesis. May help to recruit STK36 to the cilium or apical surface of the cell to initiate subsequent steps of construction of the central pair apparatus of motile cilia.

Mus musculus (taxid: 10090)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 9/215 (4%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   V  V ++  G  LAS   D+  ++W +      K     L GH   V  + + P 
Sbjct: 682 GHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKT----LTGHEHEVFSVAFHPD 737

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILD 136
             + +A+ASGDKT++LWD + G C Q      + +  + + PDG  +A    D  + + D
Sbjct: 738 -GETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWD 796

Query: 137 VRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
           V + K +   K   G+ V  +A++  G+     +G+ T+++  Y +   L T + HT   
Sbjct: 797 VSQGKCLRTLKSHTGW-VRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSV 855

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           Y IA  P  +    GS D  + LWD    +C++T 
Sbjct: 856 YSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTL 890

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
356527204	313	PREDICTED: THO complex subunit 3-like [G	0.991	0.738	0.939	1e-129
356566273	313	PREDICTED: THO complex subunit 3-like [G	0.991	0.738	0.939	1e-129
225462041	313	PREDICTED: THO complex subunit 3 [Vitis	0.944	0.702	0.935	1e-127
224061651	313	predicted protein [Populus trichocarpa]	0.944	0.702	0.926	1e-126
449463705	314	PREDICTED: THO complex subunit 3-like [C	0.952	0.707	0.905	1e-125
449526353	314	PREDICTED: THO complex subunit 3-like [C	0.948	0.703	0.905	1e-124
357460359	313	THO complex subunit [Medicago truncatula	0.991	0.738	0.909	1e-124
297796487	315	transducin family protein [Arabidopsis l	0.952	0.704	0.862	1e-121
15241134	315	THO complex subunit 3 [Arabidopsis thali	0.952	0.704	0.858	1e-120
294464220	327	unknown [Picea sitchensis]	0.944	0.672	0.865	1e-120

>gi|356527204|ref|XP_003532202.1| PREDICTED: THO complex subunit 3-like [Glycine max]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/231 (93%), Positives = 226/231 (97%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E  IPFKNLHSREY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHIEPHGHGKVKDIEL
Sbjct: 2   EEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEI+WNMTGEMFFLTTGNGTVEVL+YPSLR
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEISWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           PLDT++AHTAGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Sbjct: 182 PLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566273|ref|XP_003551358.1| PREDICTED: THO complex subunit 3-like [Glycine max]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/231 (93%), Positives = 226/231 (97%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E  IPFKNLH+REY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHIEPHGHGKVKDIEL
Sbjct: 2   EEQIPFKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMFFLTTGNGTVEVL+YPSLR
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           PLDT++AHTAGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Sbjct: 182 PLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462041|ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vinifera] gi|147789347|emb|CAN62349.1| hypothetical protein VITISV_004943 [Vitis vinifera] gi|296089987|emb|CBI39806.3| unnamed protein product [Vitis vinifera]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/231 (93%), Positives = 224/231 (96%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E +IPFKNLHSREY GHKKKVHSVAWNCTGTKLASGSVDQTAR+W IE HGHGKVKDIEL
Sbjct: 2   EETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC+QQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           IAVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMFFLTTGNGTVEVL YP+LR
Sbjct: 122 IAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPALR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           PLDT++AHTAGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Sbjct: 182 PLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061651|ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|118482489|gb|ABK93167.1| unknown [Populus trichocarpa] gi|222847844|gb|EEE85391.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/231 (92%), Positives = 224/231 (96%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E +IPFKNLHSREY GHKKKVHSVAWNCTGTKLASGSVDQTARVWHI+ HGHGK+KDIEL
Sbjct: 2   EETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIDLHGHGKIKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ ELSGENINITY+PDGTH
Sbjct: 62  KGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQTELSGENINITYRPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMF LTTGNGTVEVL+YPSL+
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFLLTTGNGTVEVLSYPSLQ 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           PL+TV+AHTAGCYCIAIDP GRYFAVGSADSLVSLWDISEMLCVRTFTKLE
Sbjct: 182 PLETVMAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463705|ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/233 (90%), Positives = 224/233 (96%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M ES+  FKNLHSREY GHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           THIAVGNRDDELTILDVRKFKP+H+RKF YEVNEIAWNMTGEMFFLTTGNGTVEVL YPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           LRP++T++AHTAGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKLE
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526353|ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/232 (90%), Positives = 223/232 (96%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M ES+  FKNLHSREY GHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           THIAVGNRDDELTILDVRKFKP+H+RKF YEVNEIAWNMTGEMFFLTTGNGTVEVL YPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
           LRP++T++AHTAGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKL
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKL 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460359|ref|XP_003600461.1| THO complex subunit [Medicago truncatula] gi|355489509|gb|AES70712.1| THO complex subunit [Medicago truncatula]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/231 (90%), Positives = 220/231 (95%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E    FKNLHSREY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHI+PH HGKVKDIEL
Sbjct: 2   EEQFSFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIDPHAHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKH DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNMTGEMFFLTTGNGTVEVL+YPSLR
Sbjct: 122 VAVGNRDDELTILDVRKFKPMHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           PLDT++AHTAGCYCIAIDP GR+FAVGSADSLVSLW ISEMLCVRTFTKLE
Sbjct: 182 PLDTLMAHTAGCYCIAIDPTGRHFAVGSADSLVSLWVISEMLCVRTFTKLE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796487|ref|XP_002866128.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311963|gb|EFH42387.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/233 (86%), Positives = 220/233 (94%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMAGDFFFLTTGLGTVEVLSYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           L+PLDT+ AHTAGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLE
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLE 233

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241134|ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana] gi|9758633|dbj|BAB09295.1| unnamed protein product [Arabidopsis thaliana] gi|20260442|gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis thaliana] gi|332009341|gb|AED96724.1| THO complex subunit 3 [Arabidopsis thaliana]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/233 (85%), Positives = 219/233 (93%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQ ELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           L+PLDT+ AHTAGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLE
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLE 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464220|gb|ADE77625.1| unknown [Picea sitchensis]

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 220/231 (95%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           +S+  FKNLH+REY  HKKKVHSVAWNCTGTKLASGSVDQTARVW+IEPHGH K KD+EL
Sbjct: 16  DSAPNFKNLHTREYAAHKKKVHSVAWNCTGTKLASGSVDQTARVWNIEPHGHSKAKDLEL 75

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GHADSVDQLCWDPKHA+L+ATASGD+TVRLWDARSGKCSQQ ELSGENINIT+KPDGTH
Sbjct: 76  KGHADSVDQLCWDPKHAELLATASGDRTVRLWDARSGKCSQQVELSGENINITFKPDGTH 135

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           IAVGNRDDELTI+DVRKFKP+H+RKF YEVNEIAWN TGE+FFLTTGNGTVEVL+YPSL+
Sbjct: 136 IAVGNRDDELTIIDVRKFKPLHKRKFSYEVNEIAWNTTGELFFLTTGNGTVEVLSYPSLQ 195

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
            L T+VAHTAGCYCIAIDP+GRYFAVGSAD+LVSLWD+SEMLCVRTFTKLE
Sbjct: 196 ALHTLVAHTAGCYCIAIDPIGRYFAVGSADALVSLWDLSEMLCVRTFTKLE 246

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2161840	315	TEX1 "AT5G56130" [Arabidopsis	1.0	0.739	0.858	3.2e-113
UNIPROTKB|F1NUQ0	381	THOC3 "Uncharacterized protein	0.952	0.582	0.535	3.6e-66
UNIPROTKB|Q29RH4	351	THOC3 "THO complex subunit 3"	0.939	0.623	0.533	2e-65
UNIPROTKB|E2RC43	351	THOC3 "Uncharacterized protein	0.939	0.623	0.533	2e-65
UNIPROTKB|Q96J01	351	THOC3 "THO complex subunit 3"	0.939	0.623	0.533	2e-65
UNIPROTKB|F1S386	351	THOC3 "Uncharacterized protein	0.939	0.623	0.533	2e-65
MGI|MGI:1920916	351	Thoc3 "THO complex 3" [Mus mus	0.939	0.623	0.533	2e-65
RGD|1311669	351	Thoc3 "THO complex 3" [Rattus	0.939	0.623	0.533	2e-65
ZFIN|ZDB-GENE-040808-14	322	thoc3 "THO complex 3" [Danio r	0.961	0.695	0.524	5.2e-65
FB|FBgn0037569	320	tex "tex" [Drosophila melanoga	0.944	0.687	0.513	2.5e-56

TAIR|locus:2161840 TEX1 "AT5G56130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 200/233 (85%), Positives = 219/233 (93%)

Query:     1 MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
             M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct:     1 MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query:    61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
             EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQ ELSGENINITYKPDG
Sbjct:    61 ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query:   121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
             TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct:   121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query:   181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
             L+PLDT+ AHTAGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLE
Sbjct:   181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLE 233

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=IMP

UNIPROTKB|F1NUQ0 THOC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 120/224 (53%), Positives = 156/224 (69%)

Query:    10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
             N  SRE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSV
Sbjct:    17 NTRSREFPAHGAKVHSVAWSCCGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSV 74

Query:    70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             DQLCW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+D
Sbjct:    75 DQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKD 134

Query:   130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
             D +T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ A
Sbjct:   135 DVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPIQSINA 194

Query:   190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
             H + C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   195 HPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 238

GO:0000346 "transcription export complex" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

UNIPROTKB|Q29RH4 THOC3 "THO complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/221 (53%), Positives = 155/221 (70%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RC43 THOC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/221 (53%), Positives = 155/221 (70%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

UNIPROTKB|Q96J01 THOC3 "THO complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/221 (53%), Positives = 155/221 (70%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0000346 "transcription export complex" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

UNIPROTKB|F1S386 THOC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/221 (53%), Positives = 155/221 (70%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

MGI|MGI:1920916 Thoc3 "THO complex 3" [Mus musculus (taxid:10090)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/221 (53%), Positives = 155/221 (70%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

GO:0000346 "transcription export complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

RGD|1311669 Thoc3 "THO complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/221 (53%), Positives = 155/221 (70%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLD 266

GO:0000346 "transcription export complex" evidence=IEA;ISO

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA;ISO

ZFIN|ZDB-GENE-040808-14 thoc3 "THO complex 3" [Danio rerio (taxid:7955)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 119/227 (52%), Positives = 159/227 (70%)

Query:     8 FKNLH-SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
             F+N + SRE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH 
Sbjct:    13 FRNNNKSREFPAHSAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDR--LVKENNYRGHG 70

Query:    67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG 126
             DSVDQLCW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVG
Sbjct:    71 DSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICWSPDGQTIAVG 130

Query:   127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186
             N+DD +T +D +  +P    +F +EVNEI+WN   +MFFLT GNG + +L+YP L+ + +
Sbjct:   131 NKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINILSYPELKLIQS 190

Query:   187 VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
             + AH + C CI  DP G+YFA GSAD+LVSLW++ E++CVR F++L+
Sbjct:   191 INAHPSNCICIKFDPTGKYFATGSADALVSLWNVEELVCVRCFSRLD 237

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0037569 tex "tex" [Drosophila melanogaster (taxid:7227)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 115/224 (51%), Positives = 141/224 (62%)

Query:    12 HS--REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
             HS  RE   H  KVHSV WN  G  LASGS D+T  V+ +E      +K    RGH  SV
Sbjct:    18 HSKIREQRSHMSKVHSVCWNADGRYLASGSFDKTVVVYSLERDRF--LKGNTYRGHTASV 75

Query:    70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             DQLCW   + D  ATASGDKTVR+WD R GKC       GENINI + PDG  IAVGN++
Sbjct:    76 DQLCWHRTNPDQFATASGDKTVRIWDIRVGKCVSVTNTKGENINIAWSPDGKTIAVGNKE 135

Query:   130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
             D +T +D R  K      F +EVNEI+WN T ++FFLT G G + +L+YPSL    T+ A
Sbjct:   136 DLITFIDTRTNKIRVEEPFSFEVNEISWNNTNDLFFLTNGLGCMHILSYPSLEHQMTLKA 195

Query:   190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
             H A C CI   P G+YFA GSAD+ VSLWD +E+ C+R  ++LE
Sbjct:   196 HPANCICIEFGPTGKYFATGSADAQVSLWDANELACLRMISRLE 239

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VE80	THOC3_MOUSE	No assigned EC number	0.5339	0.9399	0.6239	yes	no
Q96J01	THOC3_HUMAN	No assigned EC number	0.5339	0.9399	0.6239	yes	no
Q29RH4	THOC3_BOVIN	No assigned EC number	0.5339	0.9399	0.6239	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033452001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_66, whole genome shotgun sequence); (313 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017292001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (240 aa)					•		•		0.673
	GSVIVG00014829001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (812 aa)					•		•		0.604
	GSVIVG00016529001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (372 aa)					•		•		0.588
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.479
	GSVIVG00014488001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa)			•						0.472
	GSVIVG00003267001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (283 aa)			•						0.452
	GSVIVG00028413001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (519 aa)			•						0.443
	GSVIVG00013153001	SubName- Full=Chromosome undetermined scaffold_444, whole genome shotgun sequence; (459 aa)			•						0.440
	GSVIVG00023185001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (344 aa)			•						0.436
	GSVIVG00028641001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (398 aa)			•						0.430

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-17
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  133 bits (336), Expect = 6e-38
 Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R  TGH   V SVA++  G  L+S S D+T +VW +E    GK     LRGH D V+ + 
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCL-TTLRGHTDWVNSVA 142

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
           + P     +A++S D T++LWD R+GKC          +N + + PDG  +   + D  +
Sbjct: 143 FSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 133 TILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191
            + D+   K +   R     VN +A++  G +    + +GT+ V    +   + T+  HT
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWD 219
                +A  P G+  A GSAD  + +WD
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.9 bits (247), Expect = 7e-25
 Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 51/222 (22%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R   GH   V  VA++  G  LA+GS D T +VW +E           L+GH   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRD 56

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIAVGNR 128
           +         +A+ S DKT+RLWD  +G+C +   L+G    ++   + PDG  ++  +R
Sbjct: 57  VAASA-DGTYLASGSSDKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
           D  + + DV   K +                                          T+ 
Sbjct: 114 DKTIKVWDVETGKCLT-----------------------------------------TLR 132

Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
            HT     +A  P G + A  S D  + LWD+    CV T T
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.1 bits (240), Expect = 3e-23
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            +    L     +GH   V S +++  G+ LASGS D T R+W +            L G
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLR---SSSSLLRTLSG 282

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGT 121
           H+ SV  + + P    L+A+ S D TVRLWD  +GK      L G    ++   + PDG+
Sbjct: 283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 122 HIAVGNRDDE-LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
            +  G  DD  + + D+R  KP+   +    V  ++++  G +    + +GTV +    +
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
              L  +  HT+    +   P G+  A GS+D+ + LWD+   L   +F
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.4 bits (233), Expect = 2e-22
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 13/225 (5%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            R   GH + V S+A++  G  LASGS +D T ++W +            L GH D V  
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPVSS 203

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI--TYKPDGTHIAVGNRD 129
           L + P    LIA+ S D T+RLWD  +GK  +   LSG + ++  ++ PDG+ +A G+ D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGSSD 262

Query: 130 DELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEV--LTYPSLRPLD 185
             + + D+R    + R   G    V  +A++  G++    + +GTV +  L    L    
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 186 TVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTF 229
           T+  H      ++  P G     G S D  + LWD+     ++T 
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.6 bits (231), Expect = 4e-22
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 10/221 (4%)

Query: 19  HKKKVHSVAWNCTGTK---LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
           H   V  +A +        LAS S+D T ++W +   G        L GH++SV  L + 
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT---LEGHSESVTSLAFS 164

Query: 76  PKHADLIATASGDKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD-ELT 133
           P    L + +S D T++LWD R+GK  S  A  +    ++ + PDG  +      D  + 
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 134 ILDVRKFKPIHRRKFGYEVNEI-AWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHT 191
           + D+   K +     G+  + + +++  G +    + +GT+ +    S    L T+  H+
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
           +    +A  P G+  A GS+D  V LWD+     + + T  
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.0 bits (193), Expect = 5e-17
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 14/239 (5%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           +S +   +L S    GH+  + S+A++  G  L SGS D T ++W ++    G+     L
Sbjct: 48  DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN---GEKLIKSL 104

Query: 63  RG-HADSVDQLCWDPKHADLIATASG--DKTVRLWDARS-GKCSQQAELSGENIN-ITYK 117
            G H  SV +L       + I  AS   D TV+LWD  + GK  +  E   E++  + + 
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 118 PDGTHIAVGNRDDELTIL-DVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTG-NGTVE 174
           PDG  +A G+  D    L D+R  KP+         V+ +A++  G +   +   +GT+ 
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 175 VLTYPSLRPL-DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRTFTK 231
           +    + + L  T+  H+      +  P G   A GS+D  + LWD+ S    +RT + 
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 18  GHKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHADSVDQ 71
           GH   +  + +N C    LASGS D T RVW I PH    VK+I+     L+GH   +  
Sbjct: 72  GHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHNDESVKEIKDPQCILKGHKKKISI 130

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           + W+P +  ++ ++  D  V +WD  + K + Q  +  +  ++ +   G  ++       
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH 190

Query: 132 LTILDVRK 139
           + I+D RK
Sbjct: 191 MHIIDPRK 198

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
          +   GH   V SVA++  G  LASGS D T ++W 
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
          R   GH   V SVA++  G  LASGS D T RVW 
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           + L T+  HT     +A  P G   A GS D  V +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
           L+GH   V  + + P   +L+A+ S D TVR+WD
Sbjct: 6  TLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           S   L T+  HT     +A  P G+Y A GS D  + LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 15  EYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
              GH KKV  V+++ +    LAS   D    VW +E    GK  ++ ++ H+D +  L 
Sbjct: 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE---RGKAVEV-IKCHSDQITSLE 175

Query: 74  WDPKHADLIATASGDKTVRLWDARSGK--CSQQAELSG 109
           W+     L+ T S DK + + D R G    S +A  S 
Sbjct: 176 WNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
           L+GH   V  + + P     +A+ S D T++LWD
Sbjct: 7  TLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 18  GHKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHG-HGKVKD--IELRGHADSVDQLC 73
           G +  +  VA+N     KL + S D T   W I   G    + D  + L+GH   V  + 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDEL 132
           + P   +++A+A  D  V +WD   GK  +  +  S +  ++ +  DG+ +   ++D +L
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 133 TILDVRK 139
            I+D R 
Sbjct: 193 NIIDPRD 199

Length = 493

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
            +  +GH   V S+AW+  G +LASGS D T R+W
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
                V SV+++  G  ++SGS D T R+W +            L GH   V  L + P 
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST----GSLLRNLDGHTSRVTSLDFSPD 423

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112
               +A+ S D T+RLWD ++   S      G+ +
Sbjct: 424 G-KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG1539	910	consensus WD repeat protein [General function pred	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.8
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG2096	420	consensus WD40 repeat protein [General function pr	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG2055	514	consensus WD40 repeat protein [General function pr	99.76
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
COG2319	466	FOG: WD40 repeat [General function prediction only	99.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.63
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.62
KOG1963	792	consensus WD40 repeat protein [General function pr	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.58
PRK00178	430	tolB translocation protein TolB; Provisional	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.56
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.53
KOG4227	609	consensus WD40 repeat protein [General function pr	99.52
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.52
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.51
KOG1310	758	consensus WD40 repeat protein [General function pr	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
KOG4547	541	consensus WD40 repeat-containing protein [General	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.22
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.2
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.19
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.18
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.18
PRK04043	419	tolB translocation protein TolB; Provisional	99.17
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.15
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.14
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.06
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.06
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.04
KOG2695	425	consensus WD40 repeat protein [General function pr	99.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.98
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.92
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.91
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.86
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.84
KOG2315	566	consensus Predicted translation initiation factor	98.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.77
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.76
KOG1334	559	consensus WD40 repeat protein [General function pr	98.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.72
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.7
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.64
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.58
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.5
KOG2314	698	consensus Translation initiation factor 3, subunit	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.48
PRK02888	635	nitrous-oxide reductase; Validated	98.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.4
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.38
COG3391	381	Uncharacterized conserved protein [Function unknow	98.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.34
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.31
PRK02888	635	nitrous-oxide reductase; Validated	98.29
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
KOG2314	698	consensus Translation initiation factor 3, subunit	98.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.1
COG3391	381	Uncharacterized conserved protein [Function unknow	98.06
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.03
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.02
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.98
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.94
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.93
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.9
KOG3621	726	consensus WD40 repeat-containing protein [General	97.88
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.86
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.82
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.75
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.74
KOG3621	726	consensus WD40 repeat-containing protein [General	97.64
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.61
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.61
KOG2444	238	consensus WD40 repeat protein [General function pr	97.6
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.43
KOG2395	644	consensus Protein involved in vacuole import and d	97.43
PRK13616	591	lipoprotein LpqB; Provisional	97.43
PHA02713	557	hypothetical protein; Provisional	97.29
PRK13616	591	lipoprotein LpqB; Provisional	97.28
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.23
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.12
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.02
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.85
KOG2395	644	consensus Protein involved in vacuole import and d	96.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.67
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.39
PHA02790	480	Kelch-like protein; Provisional	96.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.18
PHA03098	534	kelch-like protein; Provisional	96.1
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.07
KOG2444	238	consensus WD40 repeat protein [General function pr	96.06
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.06
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.85
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.78
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.78
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.55
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.5
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.28
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.22
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.06
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.99
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.79
COG5167	776	VID27 Protein involved in vacuole import and degra	94.7
KOG2247	615	consensus WD40 repeat-containing protein [General	94.64
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.48
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.46
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.32
PHA02713	557	hypothetical protein; Provisional	94.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.17
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.1
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.72
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.42
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.36
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.14
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.12
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.51
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.07
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.02
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.99
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.88
PHA03098	534	kelch-like protein; Provisional	91.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.56
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.52
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.46
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.1
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.01
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.0
PHA02790	480	Kelch-like protein; Provisional	90.95
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.5
KOG2247	615	consensus WD40 repeat-containing protein [General	90.49
COG5167	776	VID27 Protein involved in vacuole import and degra	90.18
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.93
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	89.93
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.76
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.52
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	89.14
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.96
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.93
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.42
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.67
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.57
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.43
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.41
COG4590	733	ABC-type uncharacterized transport system, permeas	85.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	85.81
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.5
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.35
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	84.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	84.58
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.46
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	83.66
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.16
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.08
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.03
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	82.92
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	82.68
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.49
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	81.51
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.91
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	80.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	80.54
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	80.18

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.5e-42  Score=245.97  Aligned_cols=230  Identities=58%  Similarity=1.081  Sum_probs=215.4

Q ss_pred             CCCCCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCE
Q 026765            2 GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL   81 (233)
Q Consensus         2 ~~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   81 (233)
                      -++..+|+.++.+++.+|.+.|.+|+|+.+|..|++|+.|++++||+++...  .......++|.+.|-.++|+|..+.+
T Consensus         2 ~~t~~~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~   79 (313)
T KOG1407|consen    2 EETLPKFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDL   79 (313)
T ss_pred             CccccchhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcc
Confidence            3566679999999999999999999999999999999999999999998642  23445678999999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCC
Q 026765           82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (233)
                      +++++.|+.|++||++.+++.......++.+.+.|+|+|.+++++..|..|.+.|.++.+.....++..+++.+.|+.++
T Consensus        80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n  159 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN  159 (313)
T ss_pred             eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  233 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~  233 (233)
                      +++++..+.|.+.|..++..+++.++.+|.....||.|+|+|+|||+|+.|..+-+||+++.-|++.|..|+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld  231 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD  231 (313)
T ss_pred             CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998774

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.5e-40  Score=250.06  Aligned_cols=217  Identities=24%  Similarity=0.342  Sum_probs=192.9

Q ss_pred             cceeeeCccccEEEEEECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           12 HSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ...+|.||++.|.++.|+|.  +..||||+.||+|++|+++...    ....+.+|...|..++|+|+| ++|+|++.|.
T Consensus       209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~----~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~  283 (459)
T KOG0272|consen  209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET----PLQDLEGHLARVSRVAFHPSG-KFLGTASFDS  283 (459)
T ss_pred             eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc----chhhhhcchhhheeeeecCCC-ceeeeccccc
Confidence            34689999999999999997  5689999999999999987532    233678999999999999985 6889999999


Q ss_pred             eEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765           90 TVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +-++||++++......+ ++..+.+++|.|||..+++|+.|..-+|||+|+++.+.... +..+|..+.|+|+|-.++++
T Consensus       284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg  363 (459)
T KOG0272|consen  284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG  363 (459)
T ss_pred             chhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence            99999999886544333 34567889999999999999999999999999998886654 55689999999999999999


Q ss_pred             eCCCeEEEEecCCceeeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  233 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~  233 (233)
                      ++|++++|||++..+.+..+.+|..-|..|.|+| .|.+|+|+|.|++++||.-.+..+++++++|+
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE  430 (459)
T ss_pred             CCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence            9999999999998888999999999999999999 77899999999999999999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-39  Score=247.49  Aligned_cols=211  Identities=21%  Similarity=0.308  Sum_probs=188.7

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEEEEEC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDA   96 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~iwd~   96 (233)
                      |-+.+|..+.|+.+++.|||||++|.++||+...-    .....+.||+..|.++.|+|. +...++||+.||++++|++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            66899999999999999999999999999997532    234578999999999999998 4668899999999999999


Q ss_pred             CCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee-eeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      .+....+.+..+ ..+..++|+|+|++|++++.|.+-++||+++...+. +.-+..++.+++|+++|..+++|+-|..-+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence            887777766655 345679999999999999999999999998865543 344667899999999999999999999999


Q ss_pred             EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +||+++++++..+.+|..+|.+|+|+|+|..|||||.|++++|||++...++++++.|
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH  386 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH  386 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc
Confidence            9999999999999999999999999999999999999999999999999889988765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.2e-37  Score=219.49  Aligned_cols=215  Identities=19%  Similarity=0.377  Sum_probs=183.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      +..+|.+|++.|+++.|..+|++++|||.||++||||+....    .. +.-.|..+|+++..+|+..+ |++|.++|.|
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~----~q-R~~~~~spVn~vvlhpnQte-Lis~dqsg~i  148 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS----CQ-RNYQHNSPVNTVVLHPNQTE-LISGDQSGNI  148 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc----cc-hhccCCCCcceEEecCCcce-EEeecCCCcE
Confidence            667899999999999999999999999999999999996421    12 23357899999999998665 5699999999


Q ss_pred             EEEECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC------eeeeeee-cCceeeEEEECCCCC
Q 026765           92 RLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKF------KPIHRRK-FGYEVNEIAWNMTGE  162 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-~~~~~~~~~~~~~~~  162 (233)
                      ++||+.+..+.......  ..+.++...|||.+++.+...|.+.+|++-..      ++++.++ +...+..+.++|+++
T Consensus       149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence            99999998777665543  34567899999999999999999999998542      3344333 345688899999999


Q ss_pred             EEEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          163 MFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++++.+.|.+++||+.++. +.-..+.+|...++.++||.+|+||++|+.|+.+++|++..++.++.|+++
T Consensus       229 ~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            9999999999999999887 555667899999999999999999999999999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.6e-38  Score=254.46  Aligned_cols=206  Identities=23%  Similarity=0.371  Sum_probs=185.7

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+++.||.++|+.+.|+|+.++|+|+|.|++||+|.+.+..    ..+.++||..+|-++.|+|. +.++|||+.|++.+
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tAr  518 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTAR  518 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccce----eEEEecCCCcceeeEEecCC-ceEEEecCCCceee
Confidence            35689999999999999999999999999999999997633    55678899999999999998 48899999999999


Q ss_pred             EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +|........+.+..+ ..+-|+.|+|+.+|+++|+.|.++++||..++..+.... +..++.+++++|+|+++++|+.+
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            9999887766666554 456679999999999999999999999998887765433 56689999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      |.|.+||+..++.+..+.+|.+.|+++.|+.+|..||+|+.|..|++||+...
T Consensus       599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999999999999999999999999999999998754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-37  Score=231.54  Aligned_cols=214  Identities=25%  Similarity=0.401  Sum_probs=166.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.||.++|.|++|+|+|++||||+.|.+||+||+.++..    ....++|...|.+++|+|++ +.|+||+.||+|++
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp----~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~l  183 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP----LFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRL  183 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc----ceeecCCccEEEEEEECCCc-chhhccccCCeEEE
Confidence            46789999999999999999999999999999999986442    33578999999999999986 57899999999999


Q ss_pred             EECCCCeeeee-eee-cCCeeEEEEC-----CCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCC-----
Q 026765           94 WDARSGKCSQQ-AEL-SGENINITYK-----PDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMT-----  160 (233)
Q Consensus        94 wd~~~~~~~~~-~~~-~~~~~~~~~~-----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~-----  160 (233)
                      ||-.++++... +.. ...+.+++|.     |..+++++++.||.++|||+.....+... -+..+++++.|.-+     
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS  263 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS  263 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence            99988876442 332 3456678875     46789999999999999998765544332 23345555555322     


Q ss_pred             -----------------------------------------------CC-------------------------EEEEEe
Q 026765          161 -----------------------------------------------GE-------------------------MFFLTT  168 (233)
Q Consensus       161 -----------------------------------------------~~-------------------------~~~~~~  168 (233)
                                                                     ++                         .+++++
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence                                                           22                         245555


Q ss_pred             CCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          169 GNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       169 ~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .|.++.+|+.. +-+++..+.+|..-|+.+.||||++++|+||-|..|++||..+|+.+.+|.+|
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH  408 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH  408 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence            55555555542 22355566778888999999999999999999999999999999999888765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-36  Score=229.66  Aligned_cols=229  Identities=25%  Similarity=0.397  Sum_probs=183.4

Q ss_pred             CCCCCCCCCcc----ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-----------------------
Q 026765            2 GESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-----------------------   54 (233)
Q Consensus         2 ~~~~~~~~~~~----~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-----------------------   54 (233)
                      ++.+.+|+.+.    .++..+|..-|.|++|+|||+.||||+.||+|++||.....+                       
T Consensus       135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~  214 (480)
T KOG0271|consen  135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLV  214 (480)
T ss_pred             CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccC
Confidence            34555665554    356789999999999999999999999999999999643210                       


Q ss_pred             ---------------------CceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCee-
Q 026765           55 ---------------------GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-  112 (233)
Q Consensus        55 ---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~-  112 (233)
                                           .......+.||+.+|+|+.|-.  ..+|+||+.|++|++|+...|.+.+.+..+..-+ 
T Consensus       215 p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN  292 (480)
T KOG0271|consen  215 PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN  292 (480)
T ss_pred             CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence                                 0112234678999999999954  4689999999999999999888776665544322 


Q ss_pred             EE-----------EECCCCC-------------------------eEEEEcCCCcEEEEEcCCCe-eeee-eecCceeeE
Q 026765          113 NI-----------TYKPDGT-------------------------HIAVGNRDDELTILDVRKFK-PIHR-RKFGYEVNE  154 (233)
Q Consensus       113 ~~-----------~~~~~~~-------------------------~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~~  154 (233)
                      .+           +|.|.++                         .+++|+.|.++.+|+....+ ++.. ..+...++.
T Consensus       293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~  372 (480)
T KOG0271|consen  293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH  372 (480)
T ss_pred             eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence            12           3445444                         49999999999999975433 4433 224456999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.|+||++++++++-|..|++|+.++++.+.+|.+|-..|+.++|+.|.++|++||.|.+++|||+++.+..+.++++
T Consensus       373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988877776654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-35  Score=212.49  Aligned_cols=218  Identities=21%  Similarity=0.313  Sum_probs=187.9

Q ss_pred             ceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      .-++.+|++.|+.++..+.+ +.+++++.|+++.+|++...... ......+.||...|..+..++++ ++.+|+++|++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~   86 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGT   86 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccce
Confidence            45789999999999998874 67899999999999999654321 12344688999999999999975 67889999999


Q ss_pred             EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--CceeeEEEECCC--CCEEE
Q 026765           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMT--GEMFF  165 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~  165 (233)
                      +++||+.+++..+.+..+ ..+.+++|+||.+.+++|+.|.+|++|+............  ..=+.++.|+|+  ..+|+
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            999999999888877765 4567899999999999999999999999876554433332  234899999999  67888


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .++.|+++++||+++.+....+.+|.+-++.+++||||...++|+.||.+.+||+++++++++++.
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a  232 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA  232 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence            999999999999999999999999999999999999999999999999999999999999998764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.6e-35  Score=212.94  Aligned_cols=202  Identities=25%  Similarity=0.440  Sum_probs=183.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+++.+|++-+.|+.|-+ ..+|+|+|.|.+..+||++...    +...+.||..-|.++++.|.+++.++||+.|+..+
T Consensus       138 ~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  138 SRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             eeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce----EEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            367899999999999976 7788899999999999998532    44578999999999999997788999999999999


Q ss_pred             EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEEe
Q 026765           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  168 (233)
                      +||++.+.+.+.+..+ ..+..+.|.|+|.-+++|+.|++.++||+|..+.+..+..   ..++++++|+..|+++++|.
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence            9999999999998865 4556799999999999999999999999999887766654   35789999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      .|.++.+||.-.++....+.+|...|.|+..+|||.-+++||-|.++|||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999988899999999999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-35  Score=211.33  Aligned_cols=211  Identities=18%  Similarity=0.261  Sum_probs=175.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.|.||...|..++.+++|++++|+|+|+++|+||+...    ....++.||...|.+++|+|++. .++||+.|++|+
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTik  130 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG----ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIK  130 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCC----cEEEEEEecCCceEEEEecCCCc-eeecCCCcceee
Confidence            5778999999999999999999999999999999999753    23457889999999999999865 578999999999


Q ss_pred             EEECCCCeeeeeeee--cCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765           93 LWDARSGKCSQQAEL--SGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        93 iwd~~~~~~~~~~~~--~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +||............  ..-+.++.|+|+  ..+|++++.|+++++||+++.+..+... +...++.+.++|||...++|
T Consensus       131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG  210 (315)
T KOG0279|consen  131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG  210 (315)
T ss_pred             eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence            999876543222222  234568999998  6789999999999999999877665533 45678999999999999999


Q ss_pred             eCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.||...+||++..+.+..+ .|...|++++|+|+..+|+.+ .+..|+|||+++..++-++.
T Consensus       211 gkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELK  271 (315)
T ss_pred             CCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcc
Confidence            99999999999988886665 477889999999986666555 45559999999998876653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.6e-33  Score=201.94  Aligned_cols=214  Identities=18%  Similarity=0.265  Sum_probs=181.3

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+++.||.+.|+++.|++|+++++|+|.||.+.|||.-+.  .+...+  +-....|-.++|+|.+ +++++|+-|...
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~hai--pl~s~WVMtCA~sPSg-~~VAcGGLdN~C  121 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAI--PLPSSWVMTCAYSPSG-NFVACGGLDNKC  121 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEE--ecCceeEEEEEECCCC-CeEEecCcCcee
Confidence            34789999999999999999999999999999999997542  233333  3346789999999985 689999999999


Q ss_pred             EEEECCCCe------eeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECC-CCC
Q 026765           92 RLWDARSGK------CSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNM-TGE  162 (233)
Q Consensus        92 ~iwd~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~  162 (233)
                      .||++.+..      ..+.+..+ +-.-++.|.+ ...|++++.|.++.+||+++.+.+..+. +...+.++++.| +++
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            999997541      22223222 2334577766 5688899999999999999998887654 556799999999 999


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+++++.|+..++||.+.+...++|.+|...|++|+|.|+|.-+++||+|++.++||++....+..|+.
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence            999999999999999999999999999999999999999999999999999999999999888888764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.2e-33  Score=228.13  Aligned_cols=217  Identities=24%  Similarity=0.418  Sum_probs=186.3

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+++.+|...|++++|+|+++++++|+.|+++||||+...   ......+++|...|++++|+|.+ ++++||+.|++|
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTV  270 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcE
Confidence            34566899999999999999999999999999999999321   12344678999999999999998 899999999999


Q ss_pred             EEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--eeeee-c-Cc-eeeEEEECCCCCEEE
Q 026765           92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRK-F-GY-EVNEIAWNMTGEMFF  165 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~-~-~~-~~~~~~~~~~~~~~~  165 (233)
                      +|||++++++...+..+. .+..++|+++++++++++.|+.+++||+.+...  ..... . .. .+..+.|+|++++++
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence            999999999988887664 556799999999999999999999999998873  22222 1 12 589999999999999


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCcee---EEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCY---CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~---~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++..|+.+++|++...+....+.+|...+.   +...++.++++.+|+.|+.|++||+.++..++.++++
T Consensus       351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            999999999999999999999999887543   3455788999999999999999999998888777665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8e-34  Score=228.98  Aligned_cols=225  Identities=21%  Similarity=0.327  Sum_probs=193.5

Q ss_pred             CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus         9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      +.+..+.+.||+..|.+++...+|.+|+|||.|++|++|.++.............||...|.+++++..+..+++++|.|
T Consensus       354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence            45566788999999999997678899999999999999998543222223335679999999999988888899999999


Q ss_pred             CeEEEEECCCCeeee---e-------eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEE
Q 026765           89 KTVRLWDARSGKCSQ---Q-------AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAW  157 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~  157 (233)
                      +++++|++...+...   .       ..+...+.+++++|+.+.+++|+.|++.++|+++..+...... +...+.++.|
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence            999999997632111   1       1134566789999999999999999999999999766665543 5668999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  233 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~  233 (233)
                      ++..+.+++.++|.+++||.+.++.++++|.||...|.-++|-.+|+.|++|+.||-|+|||+++.+|++++.+|+
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.9e-34  Score=230.47  Aligned_cols=217  Identities=20%  Similarity=0.382  Sum_probs=186.1

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC---------------------------CCceeeEEEecCcC
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------------HGKVKDIELRGHAD   67 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~---------------------------~~~~~~~~~~~h~~   67 (233)
                      ++..-...++|+.|++|+++||-|-.|-.|++|.+.+..                           .+.....++-||.+
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            444446679999999999999999999999999876311                           01112235789999


Q ss_pred             cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee
Q 026765           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (233)
                      +|+.+.|+|+. ++|+|++.|+++|+|.+++..+......+ .++..+.|+|-|-++++++.|++.++|......+....
T Consensus       453 PVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  453 PVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             ceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            99999999985 68899999999999999998887666544 45677999999999999999999999998776665432


Q ss_pred             e-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          147 K-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      . +-..+.++.|||+.++++.|+.|.++++||..++..++-|.||.++|.+++|||+|++||+|+.||.|+|||+..+..
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc
Confidence            2 345799999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEeeecC
Q 026765          226 VRTFTKL  232 (233)
Q Consensus       226 i~~~~~~  232 (233)
                      +.+|.++
T Consensus       612 v~~l~~H  618 (707)
T KOG0263|consen  612 VKQLKGH  618 (707)
T ss_pred             hhhhhcc
Confidence            8887654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.9e-33  Score=203.78  Aligned_cols=215  Identities=23%  Similarity=0.372  Sum_probs=184.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.+|++.|+.+.|+|+|..|||||.|..|.+|++... .+  ....+++|+++|..+.|.+++ ..++|++.|++++.
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ce--N~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CE--NFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRG  116 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-cc--ceeeeccccceeEeeeeccCC-CEEEEecCCceEEE
Confidence            456799999999999999999999999999999997532 12  234577999999999999986 56789999999999


Q ss_pred             EECCCCeeeeeeeecCCeeE-EEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765           94 WDARSGKCSQQAELSGENIN-ITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ||+++|++...+..+...++ +.-+.-| ..+.+++.|+++++||+|+...++......+++.+.|..++..+++|+-|+
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            99999999887776655544 3212122 356688889999999999988888777778999999999999999999999


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC----cEEEEeeecC
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----MLCVRTFTKL  232 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~----~~~i~~~~~~  232 (233)
                      .+++||++.......+.+|...|+.++.+|+|.++.+-+-|.++++||++.    -.|++.|+++
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            999999999899999999999999999999999999999999999999873    3458888764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=195.94  Aligned_cols=218  Identities=19%  Similarity=0.328  Sum_probs=185.5

Q ss_pred             CCCCCCCCCccc----eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC
Q 026765            2 GESSIPFKNLHS----REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK   77 (233)
Q Consensus         2 ~~~~~~~~~~~~----~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   77 (233)
                      ++-+|+|++.+.    +++..-...|+.+...|+++.||.|+. ..||+||++..+..  ....+.+|+..|..+.|..+
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~t~e~h~kNVtaVgF~~d   94 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVATFEGHTKNVTAVGFQCD   94 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ceeEEeccCCceEEEEEeec
Confidence            455777876643    666645677999999999999999884 88999999865443  34568899999999999976


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEE
Q 026765           78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEI  155 (233)
Q Consensus        78 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~  155 (233)
                       ++.+++|+.||+++|||++...+.+.+....++.++..+|+...|++|..+|.|++||++.....+..-  ....+.++
T Consensus        95 -grWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl  173 (311)
T KOG0315|consen   95 -GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL  173 (311)
T ss_pred             -CeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence             478999999999999999998888888888888899999999999999999999999998654333221  23468899


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCC------ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ...++|..++++...|++++|++..      .+++.++..|..-+..+.+||++++||++|.|.+++||+.+..
T Consensus       174 ~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  174 TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            9999999999999999999999753      4677788899999999999999999999999999999999977

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-33  Score=210.74  Aligned_cols=213  Identities=21%  Similarity=0.350  Sum_probs=191.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +.+.+|.+-|.|+++.|.+.+|+||+.|++++|||+.+.    .....+.||...|..+++++..+ ++++++.|++|+.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKC  219 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKC  219 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCc-eEEEecCCCeeEE
Confidence            678899999999999999999999999999999999752    24457889999999999999876 5679999999999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ||+...+.++....+ ..+++++.+|.-+.|++|+.|..+++||+|+...++.+. +..++..+.+.+....+++++.|+
T Consensus       220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            999988876655443 457889999999999999999999999999988887766 677899999999999999999999


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +|++||+..++.+.++..|...|.+++.+|....+|+++.|. |+-|++..++.++.+.++
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc
Confidence            999999999999999999999999999999999999999886 899999999988876654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.6e-32  Score=195.09  Aligned_cols=210  Identities=26%  Similarity=0.470  Sum_probs=173.9

Q ss_pred             CccceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeE-EEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           10 NLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        10 ~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      ....+.+.+|++.|..++|+|- |..|||||.|+.||+|+... .....+.. .-.+|+..|++++|+|.+ ++|++|+.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSF   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASF   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCC-cEEEEeec
Confidence            3456788999999999999998 88999999999999999863 12222221 224799999999999986 58999999


Q ss_pred             CCeEEEEECCCCe--eeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---eee-eecCceeeEEEECCC
Q 026765           88 DKTVRLWDARSGK--CSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHR-RKFGYEVNEIAWNMT  160 (233)
Q Consensus        88 d~~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~-~~~~~~~~~~~~~~~  160 (233)
                      |.++.||.-..+.  +...++.+ .++.+++|+++|++||+++.|+.+-||.......   +.. ..+...+-.+.|+|.
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            9999999876553  44455443 5678899999999999999999999999864332   222 224567899999999


Q ss_pred             CCEEEEEeCCCeEEEEecC---CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          161 GEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ..++++++-|++|++|...   +.+...++.+|...|++++|+|.|..|++++.|++|+||.+-
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            9999999999999999765   457889999999999999999999999999999999999843

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.8e-31  Score=218.49  Aligned_cols=216  Identities=19%  Similarity=0.298  Sum_probs=170.7

Q ss_pred             eeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ..+.+|.+.|++++|+| ++++|+||+.|++|++|++......   ......+.+|...|.+++|+|.+.++|++|+.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            35789999999999999 7899999999999999998653211   0123467899999999999998777899999999


Q ss_pred             eEEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEECCCCCEEEE
Q 026765           90 TVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  166 (233)
                      .|+|||+++++....+.. ...+.+++|+|++..|++++.|+.|++||+++.+.+......  .....+.|.+++..+++
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            999999998887666553 345778999999999999999999999999988776554422  22446788888887776


Q ss_pred             Ee----CCCeEEEEecCCce-eeeEEeeec-CceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEee
Q 026765          167 TT----GNGTVEVLTYPSLR-PLDTVVAHT-AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       167 ~~----~~~~v~~~~~~~~~-~~~~~~~~~-~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~  229 (233)
                      .+    .|+.+++||.+... ++.....+. ..+....|++++++|++|+ .|+.|++||+.++.++..+
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            54    47899999997653 333333233 3455677999999998887 5999999999988876654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.1e-32  Score=221.77  Aligned_cols=217  Identities=25%  Similarity=0.432  Sum_probs=185.7

Q ss_pred             ceeeeCc-cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H-~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+......  ....++.+|...|++++|+|++ .++++|+.|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~ti  227 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTL  227 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEecCCceE
Confidence            4555555 89999999999999999999999999999843221  1223457999999999999986 588999999999


Q ss_pred             EEEEC-CCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe
Q 026765           92 RLWDA-RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        92 ~iwd~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      +|||+ ..+.+.+.+.. ...+.+++|+|+++.+++|+.|++|++||+++.+...... +...+..++|+++++++++++
T Consensus       228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            99999 44466666654 3567889999999999999999999999999987776655 456899999999999999999


Q ss_pred             CCCeEEEEecCCce--eeeEEeeecCc--eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          169 GNGTVEVLTYPSLR--PLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       169 ~~~~v~~~~~~~~~--~~~~~~~~~~~--v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .|+.+++||..++.  +...+.++...  +.++.|+|++.+|++++.|+.+++||+..+.+++++.++
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~  375 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH  375 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence            99999999999888  45677776665  899999999999999999999999999999999998876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.1e-34  Score=220.01  Aligned_cols=217  Identities=21%  Similarity=0.389  Sum_probs=181.8

Q ss_pred             cceeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ++..|.||+..|+++.|.| .+.+|+||+.|+.|+||++-..   .-+...+.+|..+|.+++|++.+.. ++|++.|+.
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~-fLS~sfD~~  281 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTS-FLSASFDRF  281 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCe-eeeeeccee
Confidence            4468999999999999999 8899999999999999998642   1233468899999999999998765 569999999


Q ss_pred             EEEEECCCCeeeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEe
Q 026765           91 VRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (233)
                      +++||+++|++...+.......++.|+|++ +.+++|+.|+.|+.||+|+++.++.+.. -..++.+.|-++++.+++++
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            999999999999999988889999999998 7888999999999999999988776653 34688999999999999999


Q ss_pred             CCCeEEEEecCCceeee----------------------------------------------EEeeecCc--eeEEEEC
Q 026765          169 GNGTVEVLTYPSLRPLD----------------------------------------------TVVAHTAG--CYCIAID  200 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~----------------------------------------------~~~~~~~~--v~~i~~~  200 (233)
                      .++++++|+.+..-+++                                              .+.+|...  ...+.||
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence            99999999975432221                                              11223221  2357899


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          201 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       201 p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      |||++|++|+.||.+.+||-++...+..++.+
T Consensus       442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             CCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence            99999999999999999999988877776654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.6e-33  Score=200.90  Aligned_cols=201  Identities=23%  Similarity=0.416  Sum_probs=182.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .|+-.|.+++|+.|.++|+||+.++.+||+|++...   ....++.+|++.|..+.|...+ +.|+|+..|++||+||.+
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~---App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~r  173 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK---APPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHR  173 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCC---CCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEec
Confidence            489999999999999999999999999999987432   2345788999999999998765 567788999999999999


Q ss_pred             CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ++..++.+.+..++.++.++++|+++.++ ..+.|.+||..+...+..+++...|++.+.+|+...+++|+.|..++.||
T Consensus       174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD  252 (334)
T ss_pred             cCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence            99999999999999999999999877544 45679999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          178 YPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       178 ~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +.+++.+..+ .+|.++|.|++|+|+|...|+||+||+|+||-+..+
T Consensus       253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            9999988886 789999999999999999999999999999988755

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-33  Score=207.42  Aligned_cols=216  Identities=25%  Similarity=0.417  Sum_probs=186.5

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.+.||++.|..++|+..|++|||++.|=.+++||.+.. ..++  ..+.+|...|.+++|-|.+ ..++|++.|.+|+
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik  218 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIK  218 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHH--HHhcCcccceeeEEEEecC-Ceeeeccccccee
Confidence            5678899999999999999999999999999999998642 2222  2356899999999999986 6788999999999


Q ss_pred             EEECCCCeeeeeeeecCCe-eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee-eeecCceeeEEEECCC----------
Q 026765           93 LWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RRKFGYEVNEIAWNMT----------  160 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~----------  160 (233)
                      .|++.++-|..++..+.+- ..++.+.||..+++++.|.++++|-+.+.+... ...+.+++.+++|.|.          
T Consensus       219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at  298 (406)
T KOG0295|consen  219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT  298 (406)
T ss_pred             EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence            9999999999888766543 457889999999999999999999988764322 2345677888888553          


Q ss_pred             -----CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          161 -----GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       161 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                           ++++.+++.|+++++||..++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||++.+.|+++...+
T Consensus       299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             CCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence                 357889999999999999999999999999999999999999999999999999999999999999987654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=209.91  Aligned_cols=215  Identities=21%  Similarity=0.344  Sum_probs=168.8

Q ss_pred             CCCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEE
Q 026765            4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA   83 (233)
Q Consensus         4 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   83 (233)
                      ..+|+.+.+  .+..|++.|+-+.||++|++||||+.|.+..+|++.....-+ ....+.+|..+|..+.|+|++. +|+
T Consensus       210 ~qip~qt~q--il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k-l~~tlvgh~~~V~yi~wSPDdr-yLl  285 (519)
T KOG0293|consen  210 LQIPSQTWQ--ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK-LKKTLVGHSQPVSYIMWSPDDR-YLL  285 (519)
T ss_pred             ccCCchhhh--hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee-eeeeeecccCceEEEEECCCCC-eEE
Confidence            345555554  788999999999999999999999999999999987644322 2235779999999999999975 566


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe----------eeeeee----
Q 026765           84 TASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFK----------PIHRRK----  147 (233)
Q Consensus        84 sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~----  147 (233)
                      +++.|..+++||+.+|.+.......  ..+.+++|.|||..+++|+.|+.+..||+....          .+....    
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence            8888889999999999876655433  456789999999999999999999999864210          011110    


Q ss_pred             ----------------------------cCceeeEEEECCC---------------------------------------
Q 026765          148 ----------------------------FGYEVNEIAWNMT---------------------------------------  160 (233)
Q Consensus       148 ----------------------------~~~~~~~~~~~~~---------------------------------------  160 (233)
                                                  ...++++...+.+                                       
T Consensus       366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS  445 (519)
T KOG0293|consen  366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS  445 (519)
T ss_pred             CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence                                        0112333333332                                       


Q ss_pred             ------CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCC
Q 026765          161 ------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE  222 (233)
Q Consensus       161 ------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~  222 (233)
                            ..++++|++|+.|+||+..+++++..+.||...|+|++|+|... ++|+||.||+||||-...
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                  34678899999999999999999999999999999999999775 689999999999998764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.9e-32  Score=209.01  Aligned_cols=214  Identities=25%  Similarity=0.417  Sum_probs=184.6

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+|..|+++|.+|+|+..|++|+|++.|+++.+||...+.    ....+.-|..+..++.|..+  .-+++.+.|+.|
T Consensus       268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i  341 (524)
T KOG0273|consen  268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCI  341 (524)
T ss_pred             hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce----EEEeeeeccCCccceEEecC--ceEeecCCCceE
Confidence            346788999999999999999999999999999999986432    22345568888788899754  357899999999


Q ss_pred             EEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCC-------
Q 026765           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE-------  162 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-------  162 (233)
                      +|+.+...++..++.. ++++.++.|.|.+..|++++.|++++||.+......+.+. +..++..+.|+|+|.       
T Consensus       342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            9999988877776664 4677789999999999999999999999987766665543 556788888988754       


Q ss_pred             --EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          163 --MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       163 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                        .+++++.|+++++||...+.++..|..|..+|++++|+|+|+|+|+|+.||.|.||+.+.++.+++++.
T Consensus       422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~  492 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG  492 (524)
T ss_pred             CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence              578888999999999999999999999999999999999999999999999999999999999999875

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.8e-30  Score=212.83  Aligned_cols=214  Identities=18%  Similarity=0.215  Sum_probs=164.6

Q ss_pred             ccceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCc----eeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765           11 LHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      .....+.+|.++|++++|+|+ +.+|||||.|++|+||++.......    .....+.+|...|.+++|+|.+..+|++|
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            345678899999999999997 7899999999999999986432100    01235678999999999999877778899


Q ss_pred             eCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-Ccee-----eEEEECC
Q 026765           86 SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEV-----NEIAWNM  159 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~-----~~~~~~~  159 (233)
                      +.|+.|+|||+++++....+.....+.+++|+|+|..|++++.|+.+++||+++.+.+..... ...+     ....|++
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~  224 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG  224 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC
Confidence            999999999999987666555556678899999999999999999999999998877655442 2122     2234568


Q ss_pred             CCCEEEEEeCCC----eEEEEecCC-ceeeeEEeeec--CceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          160 TGEMFFLTTGNG----TVEVLTYPS-LRPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       160 ~~~~~~~~~~~~----~v~~~~~~~-~~~~~~~~~~~--~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +++++++++.++    .+++||.+. .+++..+..+.  ..+......+++.++++|+.|++|++|++..+.
T Consensus       225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            889998877664    799999984 45555443222  223333345568899999999999999997663

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-31  Score=190.02  Aligned_cols=219  Identities=19%  Similarity=0.319  Sum_probs=182.3

Q ss_pred             CCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      .++...+.+..|.++|+++.|+-+|++.++++.|++||+|++...    ....++.+|...|..++.+.++. .+++|+.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dns-kf~s~Gg   79 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNS-KFASCGG   79 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeecccccccc-ccccCCC
Confidence            344455688899999999999999999999999999999997542    23447889999999999887765 4689999


Q ss_pred             CCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeee------------------
Q 026765           88 DKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRR------------------  146 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------------------  146 (233)
                      |+.+.+||+.+|+..+.+..+ +.+..+.|+.+...+++|+.|.++++||.|+..  |++.+                  
T Consensus        80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv  159 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV  159 (307)
T ss_pred             CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence            999999999999988887765 455679999999999999999999999976421  11100                  


Q ss_pred             ---------------------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCcee--EEEECCCC
Q 026765          147 ---------------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDPMG  203 (233)
Q Consensus       147 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~--~i~~~p~~  203 (233)
                                           .+++++++++++++++..++++-++++++.|-.+++.++.+.+|...-+  ..+++...
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd  239 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD  239 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence                                 1235789999999999999999999999999999999999999987654  34577777


Q ss_pred             CEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          204 RYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       204 ~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .++++||+||.|.+||+.+...+..+..
T Consensus       240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             eeEEeccCCceEEEEEeccceeeeeecc
Confidence            8999999999999999998887776654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-30  Score=190.15  Aligned_cols=217  Identities=23%  Similarity=0.348  Sum_probs=179.0

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce-----------------------------------
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-----------------------------------   57 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~-----------------------------------   57 (233)
                      .+.|..-.+.|+++.|+++|..|++++.|.++++||.....+.+.                                   
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            355666688999999999999999999999999999754321100                                   


Q ss_pred             -----eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcE
Q 026765           58 -----KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL  132 (233)
Q Consensus        58 -----~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  132 (233)
                           ...-++||...|.+++.+|.+ ..++|++.|++|++||++..+|...+...+. ..++|+|+|-++|++.....|
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeE
Confidence                 011367999999999999987 6778999999999999998888766655443 347899999999999988899


Q ss_pred             EEEEcCCCee--eeeee----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCce---eEEEECCCC
Q 026765          133 TILDVRKFKP--IHRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC---YCIAIDPMG  203 (233)
Q Consensus       133 ~i~d~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v---~~i~~~p~~  203 (233)
                      ++||+|+...  .....    ...+.+.+.|+++|+++++++..+.+++.|.-++..+.++..+...-   .+..|+|++
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds  244 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS  244 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence            9999997632  22222    23578999999999999999999999999999999888888776442   577899999


Q ss_pred             CEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          204 RYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       204 ~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +++.+|+.||+|.+|+++++..+..+.+
T Consensus       245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  245 KFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            9999999999999999999999888765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.4e-31  Score=194.18  Aligned_cols=214  Identities=21%  Similarity=0.318  Sum_probs=184.5

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+.+|+++|..+.|++|++.++|+|.|++|+.||+++..    .....++|.+.|+.+.-...+..++.||+.|+++++|
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~  160 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW  160 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce----eeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence            467999999999999999999999999999999998643    3346788999999998666677899999999999999


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeE
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      |+++..+.+.++..-+..++.|..++..+.+|+-|+.|++||++.....+... +..+|+.+..+++|.++.+-+.|.++
T Consensus       161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence            99998888877666677889999999999999999999999999877776554 45679999999999999999999999


Q ss_pred             EEEecCCc----eeeeEEeeec--Cc--eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          174 EVLTYPSL----RPLDTVVAHT--AG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       174 ~~~~~~~~----~~~~~~~~~~--~~--v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++||.+..    +++.-+.+|.  ..  ...++|+|+++.+.+|+.|+.+++||.....+++.++++
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh  307 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH  307 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence            99998753    3455566543  33  346789999999999999999999999998899988775

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1e-32  Score=209.42  Aligned_cols=208  Identities=19%  Similarity=0.345  Sum_probs=177.3

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      +.+|..|.|.|+|..|++|+..|.+-+|+......+    ..+..|.++|+++.|++++ ..++||..+|.|++|+..-.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE----tilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE----TILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHH----HHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchh
Confidence            568999999999999999999999999987432221    2356899999999999875 67889999999999987654


Q ss_pred             eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ........+ ..+.+++|+|++..+++++.|+.|+|||.+..+.... .-++-.+.+++|+|...++++++.|..|++||
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            332222223 4577899999999999999999999999876654433 33567899999999999999999999999999


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .++++++.++.+|...|..+.|+|++++|+++|.|..++++|++.++.+++|.++
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999988877777654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.8e-32  Score=207.09  Aligned_cols=202  Identities=26%  Similarity=0.527  Sum_probs=172.3

Q ss_pred             eeeC-ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           15 EYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        15 ~~~~-H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .+.+ |...|++++|+|....++|+|.|++|+|||......    ...+.||.--|.+++|+|.. .+++|||.|..|++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKl  248 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKL  248 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCcc-ceeEEccCCceeEe
Confidence            4444 559999999999999999999999999999864332    23578999999999999985 58899999999999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC-CEEEEEeCC
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGN  170 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~  170 (233)
                      ||-+++.|..++..+ ..+..+.|.|++++|++++.|..++++|+++.+.+..++ +...+.++.|+|-. .++.+++.|
T Consensus       249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence            999999988766544 456789999999999999999999999999776665554 66789999999975 456778899


Q ss_pred             CeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          171 GTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      |.+..|.....+++..+ .+|...|++++|+|-|.+|++|+.|.++++|...
T Consensus       329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999998866666554 3799999999999999999999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5e-30  Score=185.49  Aligned_cols=211  Identities=20%  Similarity=0.317  Sum_probs=181.9

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      -+.||..+++.+.||.+|.+|+|++.|.++-||-....  +++  =++.||++.|-+++.+-+ ...+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erl--Gty~GHtGavW~~Did~~-s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERL--GTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--cee--eeecCCCceEEEEEecCC-cceeeeccccceeEEE
Confidence            46799999999999999999999999999999976432  222  257899999999998865 5678899999999999


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC-----CcEEEEEcCC-------Ceeeeeee-cCceeeEEEECCCC
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILDVRK-------FKPIHRRK-FGYEVNEIAWNMTG  161 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~-------~~~~~~~~-~~~~~~~~~~~~~~  161 (233)
                      |+.+|++...+.....+..+.|+++|++++....+     +.+.++|++.       .++...+. ....++.+.|.|-+
T Consensus        80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            99999999999988889999999999998877654     4688999873       33344333 23568899999999


Q ss_pred             CEEEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          162 EMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++++++.++|.+.+||.+++ +.+.....|...|+.+.++|+..++++||.|.+.++||+.+.+++++|.
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            99999999999999999986 4555567799999999999999999999999999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.4e-29  Score=194.52  Aligned_cols=212  Identities=28%  Similarity=0.478  Sum_probs=181.5

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +++.+|.++|++++|+|++++|++++.|+.|++|++....    ....+.+|...+..+.|.|++ ..+++++.|+.|++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRL   77 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEE
Confidence            5677999999999999999999999999999999987532    223567888999999999975 57889999999999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ||+..++....+..+ ..+.++.|+|++..+++++.++.+.+||+++.+...... +...+.++.|+++++++++++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence            999887655555443 356789999998888888889999999998777666554 445699999999988888888899


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+.+|+.+..+.+..+..|...+.+++|+|+++.+++++.|+.|++||+..+..++++.
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  216 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR  216 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh
Confidence            99999999888888888898899999999999999999999999999999888887774

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-31  Score=215.82  Aligned_cols=216  Identities=20%  Similarity=0.325  Sum_probs=178.4

Q ss_pred             eeee-CccccEEEEEECcCCCEEEEEeCCCCEEEEecccC----------------------------CC----C-----
Q 026765           14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH----------------------------GH----G-----   55 (233)
Q Consensus        14 ~~~~-~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~----------------------------~~----~-----   55 (233)
                      +++. +|.+.|+++.|++||++|||||.|+.||||.+...                            ..    .     
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3455 89999999999999999999999999999987430                            00    0     


Q ss_pred             -------c------------eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEE
Q 026765           56 -------K------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY  116 (233)
Q Consensus        56 -------~------------~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  116 (233)
                             .            ....++.||.+.|.++.|+.+  ++|+|++.|++||+|++....|...+.+..-+.|++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence                   0            000146799999999999975  5888999999999999999999999999999999999


Q ss_pred             CC-CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee--e---
Q 026765          117 KP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--H---  190 (233)
Q Consensus       117 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~---  190 (233)
                      +| |.+|+++|+-|++++||++...+.+.=.....-|+.+++.|+|++.++|+-+|.+++|+....+.......  |   
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            99 77899999999999999997766654444456799999999999999999999999999987766554432  2   


Q ss_pred             ---cCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          191 ---TAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       191 ---~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                         ...|+.+.|.|... .++..++|..|||||.++...+..|.+
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG  542 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG  542 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence               23799999998554 477788999999999988777777664

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=3.7e-30  Score=208.54  Aligned_cols=212  Identities=18%  Similarity=0.319  Sum_probs=180.9

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      -...||...+++++++|||+++|||+.||.|||||...    ..+...+..|+..|+.+.|+..+ +.++|++-||+|+.
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S----gfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRA  418 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS----GFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRA  418 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC----ceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEe
Confidence            34469999999999999999999999999999999753    45677899999999999999874 67889999999999


Q ss_pred             EECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCC-cEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765           94 WDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      ||+...++-+++..+.+.  .+++..|.|..+++|+.|. .|.+|++.+++.+..+. +..+|.+++|+|.+..+++++-
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence            999988887777665543  4788999999999999886 49999999998876544 5678999999999999999999


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      |.+|++|+.-.......-..+...+..++|.|+|+.||.+.-||.|.+||.+++..+.+++
T Consensus       499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence            9999999985543333333467789999999999999999999999999999887665543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.1e-29  Score=221.33  Aligned_cols=215  Identities=16%  Similarity=0.286  Sum_probs=174.9

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC----CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG----HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      +.+|.+.|++++|+|+|++||||+.|++|+||+.....    ........+. +...+.+++|++....+|++++.|+.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            34599999999999999999999999999999975311    0011112233 346789999998767789999999999


Q ss_pred             EEEECCCCeeeeeeee-cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEEC-CCCCEEEEEe
Q 026765           92 RLWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN-MTGEMFFLTT  168 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  168 (233)
                      ++||+.+++....+.. ...+.+++|+| ++.+|++|+.|+.+++||+++...+........+.++.|+ ++++.+++++
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence            9999998877665543 35677899996 7889999999999999999987777666655678888884 5799999999


Q ss_pred             CCCeEEEEecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC------cEEEEeeecC
Q 026765          169 GNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKL  232 (233)
Q Consensus       169 ~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~------~~~i~~~~~~  232 (233)
                      .||.+++||.+..+ ++..+.+|...|.+++|. ++.+|++++.|++|+|||+..      ..++++|.++
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh  707 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH  707 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence            99999999997654 566778999999999997 678999999999999999974      3567777654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=6.8e-31  Score=193.81  Aligned_cols=218  Identities=22%  Similarity=0.397  Sum_probs=181.4

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc-------------CCCCc-eeeEEEecCcCcEEEEEEcCCCC
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-------------HGHGK-VKDIELRGHADSVDQLCWDPKHA   79 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~-------------~~~~~-~~~~~~~~h~~~v~~~~~~~~~~   79 (233)
                      ..++.|+.++++.+|+|||.++||||.|.+|||.|++.             ..+.. .....+-.|.+.|+++.|+|.. 
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence            46789999999999999999999999999999999861             00111 1223466899999999999985 


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeee---eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee----eecCcee
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFGYEV  152 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~  152 (233)
                      .+|+||+.|++|+++|.......+   .+.-..++.++.|+|.|.++++|.....+++||+.+.+..-.    .++...+
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            688999999999999987653222   233345677899999999999999999999999988765432    2345579


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecC-ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +++.+++++++.++++.||.|++||--+.+++.++. .|++ .|-+..|..+++|+.+.+.|..|++|.+.++.++++|.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            999999999999999999999999988888888765 5654 57788899999999999999999999999999999997


Q ss_pred             cC
Q 026765          231 KL  232 (233)
Q Consensus       231 ~~  232 (233)
                      +.
T Consensus       345 GA  346 (430)
T KOG0640|consen  345 GA  346 (430)
T ss_pred             cC
Confidence            64

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=8.9e-31  Score=215.43  Aligned_cols=214  Identities=21%  Similarity=0.324  Sum_probs=181.6

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+..|.+|.++|+.++|+|++.+++|||.|-+||||+...+.    +...+.||-+.|+.+.||+.-+ .|+|+|.|.+|
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr----clftL~GHlDYVRt~~FHheyP-WIlSASDDQTI  117 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR----CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTI  117 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce----ehhhhccccceeEEeeccCCCc-eEEEccCCCeE
Confidence            345688999999999999999999999999999999987532    4457889999999999999876 67799999999


Q ss_pred             EEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee---------------------------
Q 026765           92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---------------------------  143 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------------------------  143 (233)
                      +|||..+++|+..+..+. -+.|.+|+|....+++++-|.+|++||+...+.-                           
T Consensus       118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence            999999999988877654 4678899999999999999999999997422100                           


Q ss_pred             -eeee--cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          144 -HRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       144 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                       ....  +...++-++|+|+-..+++|+.|..|++|.....+  ...+..+|...|.++-|+|...++.+.|+|++|+||
T Consensus       198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence             0000  12347778999999999999999999999875433  345667999999999999999999999999999999


Q ss_pred             ecCCcEEEEeee
Q 026765          219 DISEMLCVRTFT  230 (233)
Q Consensus       219 d~~~~~~i~~~~  230 (233)
                      |+....++++|.
T Consensus       278 Dm~kRt~v~tfr  289 (1202)
T KOG0292|consen  278 DMTKRTSVQTFR  289 (1202)
T ss_pred             ecccccceeeee
Confidence            999999999984

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=6.2e-30  Score=197.44  Aligned_cols=206  Identities=29%  Similarity=0.494  Sum_probs=180.1

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      +..|++|+|+.+|+.||+|+.||.+|+|+....     ....+..|+.+|.++.|+..+ .+|++++-|+++.+||..++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCc
Confidence            467999999999999999999999999997531     122567899999999999875 57789999999999999999


Q ss_pred             eeeeeeeecCCe-eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          100 KCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       100 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ...+.+.++..+ ..+.|..+ ..+++++.|+.|+++.+....|+.... +..+|..+.|+|.+.++++++.|+++++|.
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             eEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence            999988887665 66888644 578889999999999998777776544 556899999999999999999999999999


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCC---------EEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~---------~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ......+..+.+|...|+.+.|+|.|.         .|++++.|++|++||+.++.|+.+|-++
T Consensus       388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH  451 (524)
T KOG0273|consen  388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH  451 (524)
T ss_pred             cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence            888888889999999999999999773         7999999999999999999999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=3e-31  Score=205.16  Aligned_cols=202  Identities=24%  Similarity=0.446  Sum_probs=167.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ..++|.||+.+|.+++|+++|..++|+|.|+.+|+||++++.  .+    .+.|. ..++++.|+|++++++++|+.|+.
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~--~~----~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ--VL----SRFHLDKVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce--EE----EEEecCCCceeeecCCCCCcEEEEecCCCc
Confidence            457899999999999999999999999999999999998632  11    12243 467899999999899999999999


Q ss_pred             EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee----------------------
Q 026765           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----------------------  147 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------  147 (233)
                      |+.||+++++.+++...+ +.+..+.|-++++++++.+.|+.++||+.+...++....                      
T Consensus       324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ  403 (503)
T KOG0282|consen  324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ  403 (503)
T ss_pred             EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence            999999999877665444 456679999999999999999999999865322111100                      


Q ss_pred             ----------------c-------Cc----eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765          148 ----------------F-------GY----EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID  200 (233)
Q Consensus       148 ----------------~-------~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~  200 (233)
                                      .       ++    -...+.|+|||.++++|+++|.+.+||+++-+.+..+.+|.+.+..+.|+
T Consensus       404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wH  483 (503)
T KOG0282|consen  404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWH  483 (503)
T ss_pred             ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEec
Confidence                            0       00    12357899999999999999999999999999999999999999999999


Q ss_pred             CCCC-EEEEeeCCCcEEEEe
Q 026765          201 PMGR-YFAVGSADSLVSLWD  219 (233)
Q Consensus       201 p~~~-~las~s~dg~v~iwd  219 (233)
                      |... .+|+|+-||.|++||
T Consensus       484 P~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  484 PVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCcceeEecccCceeEecC
Confidence            9764 699999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=8.9e-32  Score=201.22  Aligned_cols=216  Identities=23%  Similarity=0.368  Sum_probs=171.7

Q ss_pred             CCCCCCCCccceee---eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC
Q 026765            3 ESSIPFKNLHSREY---TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA   79 (233)
Q Consensus         3 ~~~~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   79 (233)
                      |++++........+   +.-...|+|+++  |...++||..|++|+|||.+...    +...+.||++.|.|+.|..   
T Consensus       177 dsNWr~Gr~~~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~----c~~~L~GHtGSVLCLqyd~---  247 (499)
T KOG0281|consen  177 ESNWRCGRHLLQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE----CLKILTGHTGSVLCLQYDE---  247 (499)
T ss_pred             hcchhccceeeeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHH----HHHhhhcCCCcEEeeeccc---
Confidence            34444444433333   234678999996  57889999999999999986422    3335789999999999953   


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee--e--cCceeeE
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--K--FGYEVNE  154 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~--~~~~~~~  154 (233)
                      ++|+||+.|.+|+|||.+++++......+- .+.-+.|+.  .++++++.|.++.+||+.....+...  .  +...++.
T Consensus       248 rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv  325 (499)
T KOG0281|consen  248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  325 (499)
T ss_pred             eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence            589999999999999999999877665543 344567753  58999999999999999865533211  1  2235666


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  233 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~  233 (233)
                      +.|  +.++++++++|.++++|+..+.+.+.++.+|..+|.|+.+  .++++++||.|.+|++||+..|.|++.+++++
T Consensus       326 Vdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  326 VDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             ecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence            665  6789999999999999999999999999999999999887  57899999999999999999999999888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=4.6e-29  Score=195.05  Aligned_cols=204  Identities=22%  Similarity=0.388  Sum_probs=163.9

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc---------------------ee------------------
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---------------------VK------------------   58 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~---------------------~~------------------   58 (233)
                      +|++.|++|+|+||+++++|+|.|+++||||+.......                     +.                  
T Consensus       233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~  312 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV  312 (603)
T ss_pred             CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence            899999999999999999999999999999986432100                     00                  


Q ss_pred             eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee-------------------------------eee--
Q 026765           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS-------------------------------QQA--  105 (233)
Q Consensus        59 ~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-------------------------------~~~--  105 (233)
                      ...+.||...|+++..+|++ ..|+||+.||.|.-||+..+..-                               +..  
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             hheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence            01356999999999999987 78889999999999998644210                               000  


Q ss_pred             -----------eec----------C----------------------------CeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765          106 -----------ELS----------G----------------------------ENINITYKPDGTHIAVGNRDDELTILD  136 (233)
Q Consensus       106 -----------~~~----------~----------------------------~~~~~~~~~~~~~l~~~~~d~~i~i~d  136 (233)
                                 .+.          .                            ...+++++|++..+++|+.|+++++|.
T Consensus       392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys  471 (603)
T KOG0318|consen  392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYS  471 (603)
T ss_pred             ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEE
Confidence                       000          0                            012467889999999999999999999


Q ss_pred             cCCCeee---eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee-ecCceeEEEECCCCCEEEEeeCC
Q 026765          137 VRKFKPI---HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       137 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      +......   ....+..+++.++++|++.+++++...+.+.+|+..+.+....... |...|+|++|+|++.++|+||-|
T Consensus       472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  472 LSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             ecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence            9765433   3344567899999999999999999999999999988776444444 99999999999999999999999


Q ss_pred             CcEEEEecCC
Q 026765          213 SLVSLWDISE  222 (233)
Q Consensus       213 g~v~iwd~~~  222 (233)
                      ..|.||+++.
T Consensus       552 t~Viiysv~k  561 (603)
T KOG0318|consen  552 TNVIIYSVKK  561 (603)
T ss_pred             ceEEEEEccC
Confidence            9999999974

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8e-30  Score=208.67  Aligned_cols=210  Identities=19%  Similarity=0.336  Sum_probs=175.9

Q ss_pred             CCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765            7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus         7 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .|...+..+|.||.+.|..|.|+. +.+|+|+|.|+|||+|++...     .++....|.+.|+|++|+|.+.++++||+
T Consensus       356 ~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvDDryFiSGS  429 (712)
T KOG0283|consen  356 VFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVDDRYFISGS  429 (712)
T ss_pred             cccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccCCCcEeecc
Confidence            366677788999999999999985 678999999999999998743     23345579999999999999999999999


Q ss_pred             CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---------CceeeEEEE
Q 026765           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---------GYEVNEIAW  157 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~~~~~~~  157 (233)
                      -|+.||||++...+..........+.+++|.|||++.++|+.+|.+++|+.+..+.......         +..|+.+.+
T Consensus       430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~  509 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF  509 (712)
T ss_pred             cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence            99999999999888877777778888999999999999999999999999887665433221         236999998


Q ss_pred             CCCCC-EEEEEeCCCeEEEEecCCceeeeEEeeecCc--eeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          158 NMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       158 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      .|... .+++.+.|..|+|||.++...+..|.++...  =...+|+.+|++|++|++|..|+||++.+
T Consensus       510 ~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            86543 5899999999999999877777777765432  24568999999999999999999999843

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.6e-28  Score=214.08  Aligned_cols=203  Identities=19%  Similarity=0.347  Sum_probs=169.5

Q ss_pred             ccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      +...|.+++|++. +.+|+|++.|++|++||+...    .....+.+|...|.+++|+|.++.+|++|+.|+.|++||++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            4568999999874 789999999999999998642    12345779999999999998667789999999999999999


Q ss_pred             CCeeeeeeeecCCeeEEEE-CCCCCeEEEEcCCCcEEEEEcCCCe-eeee-eecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           98 SGKCSQQAELSGENINITY-KPDGTHIAVGNRDDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ++.+...+.....+.++.| .+++.++++|+.|+.|++||++..+ ++.. ..+...+..+.|. ++..+++++.|+.++
T Consensus       607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik  685 (793)
T PLN00181        607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK  685 (793)
T ss_pred             CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence            8887776665566777888 4579999999999999999998754 2322 2344578899996 788999999999999


Q ss_pred             EEecCC------ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          175 VLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       175 ~~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      +||.+.      ..++..+.+|...+.+++|+|++++||+|+.|+.|+||+.....++
T Consensus       686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            999864      3567788899999999999999999999999999999998765444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3e-29  Score=189.06  Aligned_cols=202  Identities=25%  Similarity=0.448  Sum_probs=169.5

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC---------------------CCceeeEEEecCcCcEEEEEEc
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------HGKVKDIELRGHADSVDQLCWD   75 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~---------------------~~~~~~~~~~~h~~~v~~~~~~   75 (233)
                      .||.+.|-++..+++|.+++|||+|.+++||+.....                     ..+.....+.||.++|.++.|+
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS  269 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence            4999999999999999999999999999999932110                     0112234678999999999998


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeeee--cCce
Q 026765           76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRK--FGYE  151 (233)
Q Consensus        76 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~--~~~~  151 (233)
                      +  ...++|+++|.+|+.||+.++++...........++.++|..+.|++|+.|..+++||.|+..  .+....  +..=
T Consensus       270 d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  270 D--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             C--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            7  357789999999999999999988887777778899999999999999999999999998753  222222  2234


Q ss_pred             eeEEEECCCCCE-EEEEeCCCeEEEEecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          152 VNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       152 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +..+.|+|...+ +++++.|+++++||.++.+ ++..+.+|...|.++.|+. +.++++|+.|.+|+|+.-.
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            788999998876 5677889999999999877 9999999999999999974 6799999999999998654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.1e-27  Score=184.04  Aligned_cols=214  Identities=30%  Similarity=0.534  Sum_probs=181.6

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|...+..+.|+|+++.+++++.|+.|++|++....    ....+..|...+.++.|+|+ ..++++++.|+.+.
T Consensus        44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~  118 (289)
T cd00200          44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIK  118 (289)
T ss_pred             EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEE
Confidence            35677899999999999999999999999999999987421    22356688889999999987 46777887899999


Q ss_pred             EEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +||+++++....+.. ...+.++.++|++.++++++.++.+.+||++..+....... ...+.++.|+++++.+++++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence            999997776665553 34567899999988888888899999999987766655443 3478999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.+.+|+.+..+....+..|...+.+++|+|++.++++++.||.|++||+.++.++..+..
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence            9999999998888888878999999999999988999998899999999998888887764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=2e-28  Score=191.49  Aligned_cols=214  Identities=22%  Similarity=0.402  Sum_probs=174.2

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-CC--
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DK--   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d~--   89 (233)
                      ...|.+|..+++...|+|.|.++|||...|+|||||...  .+.+...+++.-.++|.+++|++++.+++++|-. ++  
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~--~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ--KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC--cceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            356899999999999999999999999999999999753  2445555777778899999999998887777733 33  


Q ss_pred             eEEEEECCCCeeeeeeeecCC-eeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEE
Q 026765           90 TVRLWDARSGKCSQQAELSGE-NINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  166 (233)
                      .+.+||.  +.....+..+.. +.++.|.|.. -++++|+.|+.+.+|+-..++--.. ..+..-++++.++|||+++++
T Consensus       130 ~~F~~DS--G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  130 HVFLWDS--GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             EEEEecC--CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence            3455664  444455444433 4468888865 4688999999999998544332222 223446999999999999999


Q ss_pred             EeCCCeEEEEecCCceeeeEEe---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          167 TTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+.||++.+||-.+++.+..+.   +|.+.|++++|+||++.++++|.|.++||||+.+.++++++.
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~  274 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP  274 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence            9999999999999999999888   899999999999999999999999999999999999999975

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=5.2e-29  Score=187.82  Aligned_cols=223  Identities=18%  Similarity=0.240  Sum_probs=178.4

Q ss_pred             CCCccceeeeCccccEEEEEECcC---CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765            8 FKNLHSREYTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      .+....+.+.||.++|.+++|--.   ...|+|||.|+++++|..+............+||.+.|.+++..+++ ..++|
T Consensus       132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~S  210 (423)
T KOG0313|consen  132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCS  210 (423)
T ss_pred             cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEe
Confidence            455677889999999999998433   34699999999999998876443222222345999999999999876 46789


Q ss_pred             EeCCCeEEEEECCCC-------------------------eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           85 ASGDKTVRLWDARSG-------------------------KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        85 g~~d~~i~iwd~~~~-------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      |+.|..|+||+....                         .++..+..+ ..+..+.|++ ...+.+++.|.+|+.||+.
T Consensus       211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence            999999999993211                         011112112 2345678877 6788999999999999999


Q ss_pred             CCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc---eeeeEEeeecCceeEEEECCCCC-EEEEeeCCCc
Q 026765          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSL  214 (233)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~  214 (233)
                      +.+....+..+...+++..++..+++++|+.|..+++||.+++   -...++.+|...|.++.|+|... +|++|+.|++
T Consensus       290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t  369 (423)
T KOG0313|consen  290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT  369 (423)
T ss_pred             cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence            9988888888889999999999999999999999999998754   34567889999999999999876 5899999999


Q ss_pred             EEEEecCCcE-EEEeeecC
Q 026765          215 VSLWDISEML-CVRTFTKL  232 (233)
Q Consensus       215 v~iwd~~~~~-~i~~~~~~  232 (233)
                      +++||+++.. +++.+..+
T Consensus       370 ~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  370 VKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             EEEEEeccCCCcceeeccC
Confidence            9999999877 78877665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=6.2e-29  Score=200.91  Aligned_cols=209  Identities=19%  Similarity=0.299  Sum_probs=180.4

Q ss_pred             ccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCc-ee----eEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765           11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK-VK----DIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~-~~----~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      .......+|++.|.+++++.-+ ..|+|+|.|+++|+|++....... ..    +..-..|...|++++++|++ +++++
T Consensus       402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT  480 (775)
T KOG0319|consen  402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIAT  480 (775)
T ss_pred             hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEe
Confidence            3445678999999999997755 689999999999999985411111 01    11224799999999999985 69999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCC
Q 026765           85 ASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE  162 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  162 (233)
                      ||.|++.+||++...+....+..+ ..+.++.|+|....+++++.|.+++||.+.++..+.... +...|..+.|-.+++
T Consensus       481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~  560 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK  560 (775)
T ss_pred             cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence            999999999999977766666554 456889999999999999999999999999998888776 677899999999999


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      .+++++.||.+++|+..+.++..++..|...|++++.+|.+.+++||+.||.|.+|.=
T Consensus       561 qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  561 QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            9999999999999999999999999999999999999999999999999999999963

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.8e-28  Score=175.02  Aligned_cols=202  Identities=20%  Similarity=0.428  Sum_probs=160.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..++.||.+.|.|++|+++|.+|||++.|++|-||.+.... +--+...+.+|+.-|--+.|||. ..+|+|+++|.+|+
T Consensus        98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIK  175 (312)
T ss_pred             EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccccccccEEEEcCC-cceeEEeccCCeEE
Confidence            45789999999999999999999999999999999987322 22233357899999999999997 46899999999999


Q ss_pred             EEECC-CC--eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe
Q 026765           93 LWDAR-SG--KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        93 iwd~~-~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      +|.-. ..  .+.+++..+ ..+.+++|++.|..|++++.|++++||-+...-   ...+..++..+.|.  ...|++++
T Consensus       176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~g  250 (312)
T KOG0645|consen  176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGG  250 (312)
T ss_pred             EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEecc
Confidence            99866 33  455655543 367789999999999999999999999865211   11233467788887  56899999


Q ss_pred             CCCeEEEEecCCc--ee----e-eEEeeecCceeEEEECCC-CCEEEEeeCCCcEEEEecC
Q 026765          169 GNGTVEVLTYPSL--RP----L-DTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       169 ~~~~v~~~~~~~~--~~----~-~~~~~~~~~v~~i~~~p~-~~~las~s~dg~v~iwd~~  221 (233)
                      +|+.++++.....  ++    + ..-..|...|++++|+|. .+.|++|+.||.|++|.+.
T Consensus       251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999975431  11    1 123468889999999995 6789999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.1e-29  Score=179.10  Aligned_cols=211  Identities=23%  Similarity=0.357  Sum_probs=170.1

Q ss_pred             CCCCCccceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765            6 IPFKNLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus         6 ~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      .+++..+++.|..|...|.++.|++- +..++++|+|++||+|+.+...    ....+.||...|+...|+|..++++++
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas  165 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----SVQTFNGHNSCIYQAAFSPHIPNLFAS  165 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----ceEeecCCccEEEEEecCCCCCCeEEE
Confidence            34566678889999999999999985 5668888999999999986532    223588999999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCe-eeeee-ecCceeeEEEECCC
Q 026765           85 ASGDKTVRLWDARSGKCSQQAELS-GENINITYKP-DGTHIAVGNRDDELTILDVRKFK-PIHRR-KFGYEVNEIAWNMT  160 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~  160 (233)
                      ++.|+.+++||++.......++.+ .++.++.|+. +.+.+++|+.|+.|+.||+++.+ ++..+ .++..|..+.|+|-
T Consensus       166 ~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph  245 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH  245 (311)
T ss_pred             ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence            999999999999876544445444 4778888876 56678899999999999998755 33332 35678999999987


Q ss_pred             CC-EEEEEeCCCeEEEEecCCce-eeeEEeeecCceeEEEECCC-CCEEEEeeCCCcEEEEec
Q 026765          161 GE-MFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       161 ~~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~-~~~las~s~dg~v~iwd~  220 (233)
                      .. .+++++-|=++++|+..... .+.+..-|.+-|..+.||+. ..++|+.+-|+.++||+.
T Consensus       246 ~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  246 HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            64 56777889999999987543 34455678888999999985 468999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5e-28  Score=177.80  Aligned_cols=212  Identities=22%  Similarity=0.348  Sum_probs=165.9

Q ss_pred             CccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           18 GHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        18 ~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .-.+.|.+|+|||. ..+++.+|+|++||+|+++..+....  .....|..+|.+++|+.++ ..+++|+.|+++++||+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEc
Confidence            34778999999995 45666889999999999976422111  1234688999999999876 56789999999999999


Q ss_pred             CCCeeeeeeeecCCeeEEEECCCCC--eEEEEcCCCcEEEEEcCCCeeeeeeecC-------------------------
Q 026765           97 RSGKCSQQAELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFG-------------------------  149 (233)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------  149 (233)
                      .+++..+...+..++..+.|-+...  .|++|+.|++|+.||+|...++....+.                         
T Consensus       102 ~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  102 ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY  181 (347)
T ss_pred             cCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence            9998777777777888888866555  7899999999999999876655444322                         


Q ss_pred             -----------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecC---------ceeEEEECC
Q 026765          150 -----------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTA---------GCYCIAIDP  201 (233)
Q Consensus       150 -----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~---------~v~~i~~~p  201 (233)
                                       ..+.+++..++.+..++|+-+|.+.+.....+  +.-..|..|..         .|++|+|+|
T Consensus       182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence                             12446666677777889999999988877664  44445667753         367899999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          202 MGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       202 ~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ....|+|++.||+..+||-+....+++++.+
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~  292 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETH  292 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhhccCcC
Confidence            9999999999999999999988888776654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.5e-28  Score=187.12  Aligned_cols=212  Identities=20%  Similarity=0.377  Sum_probs=179.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.++.|-.++|++++|.++++++++++.|+.+++|+++...    ...++.||++.|+++.|...... +++|+.|.+|
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r----~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRti  285 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR----LRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTI  285 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh----hhhhhcccccceeeehhhccccc-eeeccccchh
Confidence            345678889999999999999999999999999999987422    12257899999999999875433 7899999999


Q ss_pred             EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ++||+....|..+..+......+...  ...+++|..|++|++||.++.........+..++++..++++..+++.+.|.
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             hhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence            99999998887776555444445444  4578899999999999999999988888888999999999999999999999


Q ss_pred             eEEEEecCCceeeeEEeeec----CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          172 TVEVLTYPSLRPLDTVVAHT----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++.++|.++.+....+.+-+    ...+.+.|||++.|+|+||.||.|+||++.++++.+.+.
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~  426 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS  426 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence            99999999988877766422    236778999999999999999999999999999877654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=6.2e-27  Score=190.02  Aligned_cols=217  Identities=22%  Similarity=0.382  Sum_probs=185.6

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ++|.||...|.++.|+.|.++|++||.|.++|+|.++....  .....+.+|+++|...-|..+. .-+++-+.||.+.+
T Consensus       139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~--~~~~~l~gHkd~VvacfF~~~~-~~l~tvskdG~l~~  215 (893)
T KOG0291|consen  139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN--LFTYALNGHKDYVVACFFGANS-LDLYTVSKDGALFV  215 (893)
T ss_pred             eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc--cceEeccCCCcceEEEEeccCc-ceEEEEecCceEEE
Confidence            58899999999999999999999999999999999975432  3345678999999999888764 55789999999999


Q ss_pred             EECCCC-----------------------ee---------eeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           94 WDARSG-----------------------KC---------SQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        94 wd~~~~-----------------------~~---------~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      |.....                       +.         .....+   +..+.+.+|++.-+.+++|-..|...+|++.
T Consensus       216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP  295 (893)
T KOG0291|consen  216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP  295 (893)
T ss_pred             EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence            976510                       00         000001   1345578899999999999999999999999


Q ss_pred             CCeeeeeeecC-ceeeEEEECCCCCEEEEEeCC-CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          139 KFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN-GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       139 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      ....++....+ .++..++|+..|+.++.++.. |.+.+|++.+-..+.+..+|...+++++++|||+++|+|++||+|+
T Consensus       296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK  375 (893)
T KOG0291|consen  296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK  375 (893)
T ss_pred             CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence            99999988765 789999999999999999875 9999999998888888999999999999999999999999999999


Q ss_pred             EEecCCcEEEEeeecCC
Q 026765          217 LWDISEMLCVRTFTKLE  233 (233)
Q Consensus       217 iwd~~~~~~i~~~~~~~  233 (233)
                      |||..++.|+.||.++.
T Consensus       376 vWn~~SgfC~vTFteHt  392 (893)
T KOG0291|consen  376 VWNTQSGFCFVTFTEHT  392 (893)
T ss_pred             EEeccCceEEEEeccCC
Confidence            99999999999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-28  Score=175.94  Aligned_cols=201  Identities=19%  Similarity=0.279  Sum_probs=163.6

Q ss_pred             cccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           20 KKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        20 ~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      .+.+..++|++.. +++++++.||++|+||......   ....++.|...|.++.|++.....++++++|++|++|+...
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            6678899999864 6789999999999999643222   22357789999999999998888888999999999999988


Q ss_pred             CeeeeeeeecC-CeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC-CEEEEEeCCCeEE
Q 026765           99 GKCSQQAELSG-ENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGNGTVE  174 (233)
Q Consensus        99 ~~~~~~~~~~~-~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~v~  174 (233)
                      ++.++++..+. -++..+|+|. ++.+++++.|+.+++||++.......++ +..++.++.|++-. +.+++++.|+.++
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence            87777765543 3456889984 6788999999999999998654333333 45689999998754 5567788899999


Q ss_pred             EEecCCc-eeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCc
Q 026765          175 VLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~  223 (233)
                      .||++.. .++..+.+|+-.|..++|||.. ..||+++.|-+++|||....
T Consensus       217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            9999864 4788889999999999999976 57999999999999999733

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=3.7e-28  Score=182.31  Aligned_cols=211  Identities=18%  Similarity=0.291  Sum_probs=181.1

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ...++.||...|..+++|+-..+|++++.|+.||.||++...  .+  ..+.||-..|++++.+|.- ..|++|+.|.++
T Consensus       185 LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk--vI--R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~  259 (460)
T KOG0285|consen  185 LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK--VI--RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTI  259 (460)
T ss_pred             EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh--hH--HHhccccceeEEEeccccc-eeEEecCCcceE
Confidence            345788999999999999999999999999999999997532  12  2567999999999999975 578999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      ||||+++...+..+..+ ..+..+.+.|-...+++|+.|++|++||++.++...... +...+.+++.+|....+++++.
T Consensus       260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence            99999998877777644 456678888888889999999999999999887665543 4567899999999988888887


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      | .++-|+++.++.+..+.+|..-|++++.+.| .++++|+++|.+..||-+++..-+.+
T Consensus       340 d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  340 D-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             c-cceeccCCccchhhccccccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccc
Confidence            7 6899999999998889999999999999876 48889999999999999999766554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=6.8e-27  Score=175.65  Aligned_cols=203  Identities=22%  Similarity=0.379  Sum_probs=164.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .-++.+|+..|+++.|+.+|.+||||+.+|.|+||++....    ....+......+.-+.|||. ..+|+.|+.||.+.
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~----~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW  173 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG----EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW  173 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc----eEEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence            45778999999999999999999999999999999987532    23344445567888999996 57889999999999


Q ss_pred             EEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----------------------
Q 026765           93 LWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----------------------  148 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------  148 (233)
                      +|.+.++...+.+..+. +..+-.|.|+|++++++..|++|++|++.+.++.+....                       
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            99998865445444433 344567999999999999999999999877665544430                       


Q ss_pred             -------------------------------------------------------------------------CceeeEE
Q 026765          149 -------------------------------------------------------------------------GYEVNEI  155 (233)
Q Consensus       149 -------------------------------------------------------------------------~~~~~~~  155 (233)
                                                                                               ...|..+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL  333 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence                                                                                     0011223


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .|-+ ..++++++.+|.++.||.++++....+.+|...|.+++++|+.++++|+|.|++.+||+..
T Consensus       334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            3433 4577899999999999999999999999999999999999999999999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.8e-28  Score=192.97  Aligned_cols=208  Identities=19%  Similarity=0.298  Sum_probs=176.1

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      +.+.|.--.-+|++.+|-+--+++++|+.|..||||+.++..  +  ...+.+|.+.|++++.||..+. ++|++.|-+|
T Consensus        47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e--k--V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~i  121 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE--K--VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTI  121 (794)
T ss_pred             eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce--e--eEEeeccccceeeeeecCCCCe-EEecCCccEE
Confidence            445666667789999999999999999999999999987532  3  3468899999999999999874 5699999999


Q ss_pred             EEEECCCC-eeeeeeeec-CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC--CEEE
Q 026765           92 RLWDARSG-KCSQQAELS-GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG--EMFF  165 (233)
Q Consensus        92 ~iwd~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~  165 (233)
                      ++||.+.. .|.+.++.+ +-+..++|.|. .+.+++++-|+++++|.+.+..+....+ +...++++.+-+-|  .+++
T Consensus       122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence            99998764 466666654 34678999984 5789999999999999998877665544 45679999986544  6899


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +|+.|.++++||+.+..++.++.+|...|..+.|+|.-.++++||+||+||||+..+=.
T Consensus       202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence            99999999999999999999999999999999999999999999999999999977543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=3e-29  Score=187.71  Aligned_cols=196  Identities=18%  Similarity=0.310  Sum_probs=156.8

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +.+.||++.|.|+.|.  ...++|||+|.+|+|||+++...-    ..+-+|.+.|..+.|+.   .++++++.|.++.+
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l----~tlihHceaVLhlrf~n---g~mvtcSkDrsiaV  301 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL----NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAV  301 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh----hHHhhhcceeEEEEEeC---CEEEEecCCceeEE
Confidence            5678999999999985  569999999999999999864321    23568999999999963   47899999999999


Q ss_pred             EECCCCee---eeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe
Q 026765           94 WDARSGKC---SQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        94 wd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      ||+.....   .+.+..+.. +..+.|  +.+++++++.|.+|++|++.+.+-+.... +...+.++.  ..++++++|+
T Consensus       302 Wdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ--Yr~rlvVSGS  377 (499)
T KOG0281|consen  302 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGS  377 (499)
T ss_pred             EeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehh--ccCeEEEecC
Confidence            99987642   122222222 223455  55699999999999999998876654433 233455554  4789999999


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      .|.++++||...+.++..+.+|.+-|.||.|+  .+.+++|+.||+|+|||+..++
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence            99999999999999999999999999999995  5799999999999999998664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=178.13  Aligned_cols=204  Identities=23%  Similarity=0.358  Sum_probs=176.4

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .++...||.-.|.+++|-|-|.+++|++.|.+|+.|++.+.    .+...+.+|...|.-+..+.++ .++++++.|.++
T Consensus       185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl  259 (406)
T KOG0295|consen  185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTL  259 (406)
T ss_pred             HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCe-eEEEecCCCceE
Confidence            34667899999999999999999999999999999998752    3455789999999999998764 689999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCC---------------CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeE
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPD---------------GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNE  154 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~  154 (233)
                      ++|-+.+++|...+..+ ..+.+++|.|.               +.++.+++.|++|++||+.++..+..+. +..-|..
T Consensus       260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence            99999998776655433 34455666542               2488999999999999999987776544 4556899


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      ++|+|-|+|+++...|+++++||+...++++.+..|..-|++++|+.+-.++++|+-|.++++|..
T Consensus       340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999999999999999999999999999999964

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.3e-26  Score=174.19  Aligned_cols=214  Identities=18%  Similarity=0.226  Sum_probs=172.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..+|..|++.|.+++.+|+.+++||||.|..-.+|+.....    ...++.+|++.|+++.|+.++ .+|++|.-+|.|+
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~  131 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVL  131 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCc-eEEEecCCCccEE
Confidence            45788999999999999999999999999999999987543    345788999999999999875 6899999999999


Q ss_pred             EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ||+..++.....+... ....-+.|+|.+..++.|+.||.+.+|.+.+....+.+. +..++++=.|.|+|+.++.+..|
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence            9999998766655422 345568999999999999999999999987643322222 44567777888999999999999


Q ss_pred             CeEEEEecCCceeeeEEe--------------------------------------------------------------
Q 026765          171 GTVEVLTYPSLRPLDTVV--------------------------------------------------------------  188 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~--------------------------------------------------------------  188 (233)
                      |++++|+..++.++..+.                                                              
T Consensus       212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~  291 (399)
T KOG0296|consen  212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES  291 (399)
T ss_pred             ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence            999999977665543332                                                              


Q ss_pred             ---------------------------------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          189 ---------------------------------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       189 ---------------------------------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                                                       .|..+|..+.|-+ ..+|++++.||+|+.||.++|.++.+|.+|
T Consensus       292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH  367 (399)
T KOG0296|consen  292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH  367 (399)
T ss_pred             cccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence                                             1234566777777 678888888888888888888888888765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2e-27  Score=195.35  Aligned_cols=206  Identities=26%  Similarity=0.404  Sum_probs=177.3

Q ss_pred             ee-eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 RE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~-~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .. +.||.+.|++++|..-+..|+||+.|+++||||.....    +...+.+|...|.++...+   ..+++|+.|.+|+
T Consensus       242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVk  314 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVK  314 (537)
T ss_pred             EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEecCCCceEEEEEccC---ceEeeccCCceEE
Confidence            44 88999999999998878999999999999999976432    3346789999999998764   4678999999999


Q ss_pred             EEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +|++.++.+...+. +...+.++...  +.++++|+.|++|.+||.++.+.+.... +...|.++.+... +.++.|+.|
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D  391 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD  391 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence            99999999988877 55667777776  7799999999999999999888877654 5567888877554 889999999


Q ss_pred             CeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          171 GTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       171 ~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.+++||+++. +++..+.+|.+-|.++.+  .+++|++++.|++|++||.++++|++++.+
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            99999999998 899999999988866555  568999999999999999999999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.9e-27  Score=183.36  Aligned_cols=201  Identities=22%  Similarity=0.290  Sum_probs=169.7

Q ss_pred             eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +.+.+|+.+|+.+.|+|++ ..|++|+.|+.+++||++...   . ..++.+|++.|.+.+|+|...++++|||+||.|+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---E-EEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            4578999999999999976 567888999999999997532   3 5688999999999999999889999999999999


Q ss_pred             EEECCCC-eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee-eeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765           93 LWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        93 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      +||++.. ..+.++....++..+.+.|.|..|++++. ..+++||+-++.. +.... +...++|+.+..++..+++++-
T Consensus       180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL  258 (487)
T KOG0310|consen  180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL  258 (487)
T ss_pred             EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence            9999887 55566667777888999999999988764 4699999985443 33333 6678999999999999999999


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      |+.+++|+..+.+.+..+. ..++|.+++.+|+++.++.|-.||.+-+=+.
T Consensus       259 D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  259 DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            9999999988777766543 6789999999999999999999998876643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.6e-28  Score=186.01  Aligned_cols=211  Identities=19%  Similarity=0.332  Sum_probs=175.4

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +.+......|+++.|-.||++||.|+..|.|+|+|..+    +.....+.+|+.+|..+.|+|.+..++++|+.|+.+++
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~  137 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY  137 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence            44667788999999999999999999999999999643    22233577999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeee-cCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCC-eeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765           94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ||+.+......+.. ..-+.+.+++|. +..+++|+.||.|++||++.. ..+..+.++.++..+.+=|.|..+++++++
T Consensus       138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn  217 (487)
T KOG0310|consen  138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN  217 (487)
T ss_pred             EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence            99988764222222 234667888885 457889999999999999987 677778899999999999999888888766


Q ss_pred             CeEEEEecCCcee-eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          171 GTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       171 ~~v~~~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                       .+++||+..+.. +..+..|...|+|+++.-++..|.+||-|+.|+|||..+-+.++.+
T Consensus       218 -~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  218 -SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             -eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence             799999985544 4444459999999999999999999999999999998877776654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-27  Score=172.22  Aligned_cols=210  Identities=23%  Similarity=0.369  Sum_probs=169.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-------ce-----------------------------
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-------KV-----------------------------   57 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-------~~-----------------------------   57 (233)
                      -+|.||++.|+|++.+.+.+.|+||++|.++++||++...+.       .+                             
T Consensus        46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence            478999999999999999999999999999999998653210       00                             


Q ss_pred             -------------eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeee-ecCCeeEEEECCCCCe
Q 026765           58 -------------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQAE-LSGENINITYKPDGTH  122 (233)
Q Consensus        58 -------------~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~  122 (233)
                                   ....++.+...++.+-|.|-+ +.|++|..||.|.+||++++.. +.... +...+..++++|+..+
T Consensus       126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~  204 (327)
T KOG0643|consen  126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY  204 (327)
T ss_pred             EccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence                         011234566778888999875 6788999999999999999753 33323 3345667999999999


Q ss_pred             EEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC--------------CceeeeEEe
Q 026765          123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP--------------SLRPLDTVV  188 (233)
Q Consensus       123 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~~  188 (233)
                      +++++.|.+-++||+++.+.+..+....++++.+++|..+.++++++...--+=...              .-+.+..+.
T Consensus       205 FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk  284 (327)
T KOG0643|consen  205 FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK  284 (327)
T ss_pred             EEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence            999999999999999999999999989999999999999888888765443332211              123566778


Q ss_pred             eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +|-++|++++|+|+|+..++|++||.|+|.-.++..
T Consensus       285 GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~Y  320 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSNY  320 (327)
T ss_pred             ccccCcceeEECCCCcccccCCCCceEEEEEeccch
Confidence            999999999999999999999999999998776543

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.7e-26  Score=188.53  Aligned_cols=188  Identities=18%  Similarity=0.273  Sum_probs=150.2

Q ss_pred             EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--------eeeee-ec
Q 026765           38 GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--------SQQAE-LS  108 (233)
Q Consensus        38 ~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--------~~~~~-~~  108 (233)
                      |+.++.|++|+....    .....+.+|...|.+++|+|..+.+|+||+.|+.|+|||+.++..        ...+. +.
T Consensus        50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            667889999987532    133467899999999999998678999999999999999976421        11222 23


Q ss_pred             CCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE
Q 026765          109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV  187 (233)
Q Consensus       109 ~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  187 (233)
                      ..+.+++|+|++..+ ++++.|+.+++||+++.+......+...+.+++|+++|+++++++.|+.+++||.++++.+..+
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            456789999998765 6889999999999998877666656667999999999999999999999999999999998889


Q ss_pred             eeecCceeE-----EEECCCCCEEEEeeCCC----cEEEEecCC-cEEEEee
Q 026765          188 VAHTAGCYC-----IAIDPMGRYFAVGSADS----LVSLWDISE-MLCVRTF  229 (233)
Q Consensus       188 ~~~~~~v~~-----i~~~p~~~~las~s~dg----~v~iwd~~~-~~~i~~~  229 (233)
                      .+|.+.+.+     ..|++++.+|++++.|+    .|+|||++. ..+++++
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            999876433     34568999999888764    799999984 5566554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-26  Score=171.27  Aligned_cols=203  Identities=20%  Similarity=0.355  Sum_probs=168.4

Q ss_pred             eeeeCccccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+..|.+.|+++.|.+.-.  .|+||+.||.|.+|++..    ....-.+++|...|+.++.+|.+ ++.++-+.|+.+
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~l  151 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVL  151 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCC-ceEEEEcCCcee
Confidence            34568999999999998765  999999999999999854    33444688999999999999975 688899999999


Q ss_pred             EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ++||+-.|+......+......+.|+|.|.+++++..+ .|-+|.+.+............+.++.| -++..+++|..|+
T Consensus       152 r~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~  229 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATF-LDGSELLVGGDNE  229 (362)
T ss_pred             eeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeee-cCCceEEEecCCc
Confidence            99999999877777777777779999999999888876 588888876544433333333445544 3678899999999


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEE--CCCCCEEEEeeCCCcEEEEecCCc
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAI--DPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      .+.+||.++..+...+.+|..+|..+.+  +|++.+|+++|.||.|+|||++..
T Consensus       230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9999999888888999999999999883  678899999999999999999865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.2e-28  Score=173.03  Aligned_cols=207  Identities=22%  Similarity=0.357  Sum_probs=167.4

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE-cCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~sg~~d~~i~   92 (233)
                      +.-++|.+.|..+..+-.|++|||||+|++|||+.+....+. ....++.||.++|..++| +|.-+.+|+|++.||.|.
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            345689999999999999999999999999999999765432 345689999999999999 677778999999999999


Q ss_pred             EEECCCCeeeeeee---ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCC-eee-e--eeecCceeeEEEECCC---
Q 026765           93 LWDARSGKCSQQAE---LSGENINITYKPD--GTHIAVGNRDDELTILDVRKF-KPI-H--RRKFGYEVNEIAWNMT---  160 (233)
Q Consensus        93 iwd~~~~~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~~-~--~~~~~~~~~~~~~~~~---  160 (233)
                      ||.-.+++..+...   +...+.+++|.|.  |-.|++++.||.|.+++.+.. ... .  ...+...+++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99998886544332   3455677899886  567889999999999987654 211 1  1224556889999886   


Q ss_pred             C-----------CEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeEEEECCCC----CEEEEeeCCCcEEEEecC
Q 026765          161 G-----------EMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       161 ~-----------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~----~~las~s~dg~v~iwd~~  221 (233)
                      |           +.+++|+.|..+++|.+...  +.-.++.+|...|..++|.|.-    .+||++|.||+|.||-..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            4           56899999999999998764  3445588999999999999965    379999999999999876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.5e-26  Score=160.80  Aligned_cols=207  Identities=20%  Similarity=0.313  Sum_probs=164.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-CceeeEEEecCcCcEEEEEEcCC---CCCEEEEEeC-C
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-GKVKDIELRGHADSVDQLCWDPK---HADLIATASG-D   88 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~sg~~-d   88 (233)
                      +.-..|++.|+|.+|+|.|++++||+.|++||+-..+.... ..-..+++..|.+.|..++|..+   ++.+|++++. |
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            34457999999999999999999999999999976653322 12245678889999999999532   3456666643 5


Q ss_pred             CeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--------CceeeEEEECC
Q 026765           89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------GYEVNEIAWNM  159 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~  159 (233)
                      ..|.+-|-..++..+....+ +.+.. -++=++-.+++|+.|.+|++||++-...+.....        ...+..++..|
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence            55666677777655544433 33333 2344678899999999999999986655443321        24688899999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .|+++++|..|....+||.+-+++++.+..|...|.|+.|+|...||.++|.|.+|++=|+.
T Consensus       242 sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.1e-27  Score=184.61  Aligned_cols=219  Identities=20%  Similarity=0.346  Sum_probs=167.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC-------------C------------Cceee-------
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------------H------------GKVKD-------   59 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~-------------~------------~~~~~-------   59 (233)
                      |-..+.+|+..|.++++.|.|.+|+|||.|-+|++||+..-.             .            ..+..       
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            445688999999999999999999999999999999963100             0            00000       


Q ss_pred             -----------------------EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eeee---c---C
Q 026765           60 -----------------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-QAEL---S---G  109 (233)
Q Consensus        60 -----------------------~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~---~---~  109 (233)
                                             ...+||...+++.+|+|.....+++++.|+++||||+...+... .+..   .   -
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence                                   01368999999999999998899999999999999997764322 1111   1   1


Q ss_pred             CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--eeeee--c--CceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-e
Q 026765          110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRK--F--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-R  182 (233)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  182 (233)
                      .+..++|+|++++||+|..||.|.+|+.++...  ...++  +  +..++++.|+++|+++++-+.|+++++||++.. +
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            345799999999999999999999999865432  22222  2  347999999999999999999999999999865 3


Q ss_pred             eeeEEeee--cCceeEEEECCCCCEEEEeeC------CCcEEEEecCCcEEEEeee
Q 026765          183 PLDTVVAH--TAGCYCIAIDPMGRYFAVGSA------DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       183 ~~~~~~~~--~~~v~~i~~~p~~~~las~s~------dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++....+-  ..+-+.++|||+.++|++|..      .|++.+||..+.+.++++.
T Consensus       399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID  454 (641)
T ss_pred             chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence            44443332  223457899999999999873      4679999999888887753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.4e-26  Score=178.05  Aligned_cols=209  Identities=25%  Similarity=0.439  Sum_probs=167.8

Q ss_pred             eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      -.+.||.+.-+.|+|++.. -.|+||+.|++|.+||++.....   ......+.+|.+.|..++|++....++++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            4788999989999999875 47899999999999999764432   2234468899999999999999999999999999


Q ss_pred             eEEEEECCC--Ceeeeeee-ecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCee-eee-eecCceeeEEEECCCCCE
Q 026765           90 TVRLWDARS--GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKP-IHR-RKFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        90 ~i~iwd~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  163 (233)
                      .+.|||+|+  .++..... ..+++.+++|+|- +..||+|+.|+++.+||+|+.+. ++. ..+..++..+.|+|....
T Consensus       251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et  330 (422)
T KOG0264|consen  251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET  330 (422)
T ss_pred             eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence            999999995  33333332 3467788999995 45678899999999999997543 333 335678999999998765


Q ss_pred             E-EEEeCCCeEEEEecCC--------------ceeeeEEeeecCceeEEEECCCCCE-EEEeeCCCcEEEEecCC
Q 026765          164 F-FLTTGNGTVEVLTYPS--------------LRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISE  222 (233)
Q Consensus       164 ~-~~~~~~~~v~~~~~~~--------------~~~~~~~~~~~~~v~~i~~~p~~~~-las~s~dg~v~iwd~~~  222 (233)
                      + ++++.|+.+.+||+..              .+.+..-.||...|..++|+|+..+ +++.++|+.+.||.+..
T Consensus       331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            4 5567899999999842              2334556689999999999999886 78899999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-26  Score=184.77  Aligned_cols=210  Identities=20%  Similarity=0.253  Sum_probs=180.5

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..++|..|.+-|+|++.+|...+++|+|.|-+||+|+.+.   .+.+...+.||+..|-+++|+|.+.+.++|++-|++|
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            3468899999999999999999999999999999999864   4556678999999999999999999999999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +||.+....+..++..+ ..+.++.+-+  |..++++|+.|..+++||..+-..+.... +...+..+.|+|.-..+++|
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            99999988887777755 3456788865  44699999999999999988766665544 55679999999999999999


Q ss_pred             eCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      ++||++++|+..+.+...++.-..+.|+||+-.+.++.++.|..+|.|.| ++-..++
T Consensus       246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP  302 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEP  302 (794)
T ss_pred             cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCC
Confidence            99999999999998888888888899999999999999999988887654 3433333

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=171.29  Aligned_cols=207  Identities=17%  Similarity=0.223  Sum_probs=156.6

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.||.+.|++++|+.+|+.|||++.|++||||++..........++..-.-+.-+.+.|.|+...++++.-....+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            46789999999999999999999999999999999865332211111111122356778999998888888888889999


Q ss_pred             EECCCCe---eeeeee----------ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECC
Q 026765           94 WDARSGK---CSQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNM  159 (233)
Q Consensus        94 wd~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~  159 (233)
                      |.+...+   ....+.          ....++++-...++.+|++++.|..|.+|+++ ++.+..+..+ ......+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            9874322   111111          11234556667788999999999999999998 5555544433 2345678899


Q ss_pred             CCCEEEEEeCCCeEEEEec---CCc-----eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          160 TGEMFFLTTGNGTVEVLTY---PSL-----RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~---~~~-----~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +|+++++++-.-.+++|..   +.+     .....+.+|.+.|...+|||+.+.+++.|.||+++|||.+
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            9999999988888999964   222     2345678999999999999999999999999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=4.7e-26  Score=167.80  Aligned_cols=206  Identities=19%  Similarity=0.357  Sum_probs=168.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .|.+++++++|.+ ...+++|+.||.||++|++....     ..+..|..+|.++.+.+.. ..+++|++|++|++||.+
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecc
Confidence            5899999999976 67888999999999999986432     2466799999999999764 567899999999999999


Q ss_pred             CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee---eeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      .............+.++..  .++.|++|+.+..+.+||+++.....   ...+...+.++++-|++.-+++++-+|.+.
T Consensus       125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa  202 (323)
T KOG1036|consen  125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVA  202 (323)
T ss_pred             ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEE
Confidence            8655555555556666554  57799999999999999999865443   233467889999999999999999999999


Q ss_pred             EEecCCc----eeeeEEeeecC---------ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          175 VLTYPSL----RPLDTVVAHTA---------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       175 ~~~~~~~----~~~~~~~~~~~---------~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +=.+++.    +.-..|..|..         +|++|+|+|-...||||+.||.|.+||+...+.+++|.+.
T Consensus       203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            8777655    23344666642         5899999999999999999999999999999888888764

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.1e-25  Score=182.88  Aligned_cols=218  Identities=16%  Similarity=0.204  Sum_probs=167.7

Q ss_pred             CCCCccceee--eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC-------CCce--eeEEEecCcCcEEEEEEc
Q 026765            7 PFKNLHSREY--TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------HGKV--KDIELRGHADSVDQLCWD   75 (233)
Q Consensus         7 ~~~~~~~~~~--~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~-------~~~~--~~~~~~~h~~~v~~~~~~   75 (233)
                      +|+.+..+..  ..|-..|+....++++..+++++.+..+..|+.....       .++.  ....+.+|.+.|.+++|+
T Consensus         5 k~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs   84 (493)
T PTZ00421          5 RFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN   84 (493)
T ss_pred             cccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc
Confidence            4666655443  2466778888888898888999988888889753211       0110  012367999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCee-------eeeeee-cCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeee
Q 026765           76 PKHADLIATASGDKTVRLWDARSGKC-------SQQAEL-SGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR  146 (233)
Q Consensus        76 ~~~~~~l~sg~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (233)
                      |.++.+|++|+.|++|++||+.++..       ...+.. ...+.+++|+|++ ++|++++.|+.|++||+++.+.....
T Consensus        85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l  164 (493)
T PTZ00421         85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI  164 (493)
T ss_pred             CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence            95567899999999999999976531       222322 3456779999985 68999999999999999987766554


Q ss_pred             e-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCce-eEEEECCCCCEEEEee----CCCcEEEEec
Q 026765          147 K-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC-YCIAIDPMGRYFAVGS----ADSLVSLWDI  220 (233)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-~~i~~~p~~~~las~s----~dg~v~iwd~  220 (233)
                      . +...+.+++|+++++++++++.|+.+++||.++++.+..+.+|...+ ..+.|.|++..+++++    .|+.|++||+
T Consensus       165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            4 45579999999999999999999999999999998888888887653 4678898887776654    5899999999


Q ss_pred             CCcE
Q 026765          221 SEML  224 (233)
Q Consensus       221 ~~~~  224 (233)
                      ++..
T Consensus       245 r~~~  248 (493)
T PTZ00421        245 RKMA  248 (493)
T ss_pred             CCCC
Confidence            8653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=5.2e-26  Score=190.88  Aligned_cols=211  Identities=21%  Similarity=0.335  Sum_probs=173.1

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC------C--------CceeeEEEecCcCcEEEEEEcCCCCC
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------H--------GKVKDIELRGHADSVDQLCWDPKHAD   80 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~------~--------~~~~~~~~~~h~~~v~~~~~~~~~~~   80 (233)
                      +...|.+.|+|+.|+|||++||+||.|+.|.||+.....      .        .......+.+|...|.+++|+|++ .
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~  142 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-S  142 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-c
Confidence            456899999999999999999999999999999976300      0        012344688999999999999975 6


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-------Ccee
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-------GYEV  152 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~  152 (233)
                      +++|++.|++|.|||.++.++...+..+ +.+..+.|+|-|+++++-+.|+++++|++..+...+.+..       ....
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence            8999999999999999998777666544 5667799999999999999999999999877655544332       2236


Q ss_pred             eEEEECCCCCEEEEEe----CCCeEEEEecCCceeeeEEeeecCceeEEEECCC-----CC------------EEEEeeC
Q 026765          153 NEIAWNMTGEMFFLTT----GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----GR------------YFAVGSA  211 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-----~~------------~las~s~  211 (233)
                      ..+.|+|||+++++..    ....+.|++-.+.+.-..+.+|.+++.+++|+|.     .+            .+|+||.
T Consensus       223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            7789999999998764    3467888888888888899999999999999872     12            5799999


Q ss_pred             CCcEEEEecCCcEEE
Q 026765          212 DSLVSLWDISEMLCV  226 (233)
Q Consensus       212 dg~v~iwd~~~~~~i  226 (233)
                      |++|-||+.....++
T Consensus       303 DrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPL  317 (942)
T ss_pred             CccEEEEecCCCCch
Confidence            999999998776654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=3.7e-26  Score=175.18  Aligned_cols=206  Identities=18%  Similarity=0.302  Sum_probs=176.6

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ...++++...|..+.++||+.|+.+.++|.....    ....++||...|+.+.++|+. ..+++++.|..|+||.....
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q----~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ----ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhh----hhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccc
Confidence            4568888888888899999999999999975421    223589999999999999974 56789999999999998766


Q ss_pred             eeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765          100 KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      .+..... +..++..+..+|.|.|+++++.|+...+.|++++..+.....   ...+++.+|||||..+.+|..|+.+++
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            5444333 345667789999999999999999999999998877655443   356899999999999999999999999


Q ss_pred             EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ||+.+..-...|.+|.++|..|+|+-+|-|||++++|+.|++||++..+..++|+
T Consensus       374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            9999888888899999999999999999999999999999999999888777765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.3e-25  Score=162.24  Aligned_cols=210  Identities=20%  Similarity=0.289  Sum_probs=177.2

Q ss_pred             eeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           15 EYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .+.+|.+.|-.++|+|. .+++++++.|++|++||....  ..+..++.+   ..-.-+.|+|++. .++.++.|..|.+
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~--k~~~~i~~~---~eni~i~wsp~g~-~~~~~~kdD~it~  132 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--KCTARIETK---GENINITWSPDGE-YIAVGNKDDRITF  132 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--cEEEEeecc---CcceEEEEcCCCC-EEEEecCcccEEE
Confidence            56799999999999985 578999999999999998642  223333322   2334578999865 6678999999999


Q ss_pred             EECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCe
Q 026765           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      .|.++.+.....++......+.|+-+++.++.....|++.|..-...+++..++ +.....++.|+|+|+++++|+.|-.
T Consensus       133 id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl  212 (313)
T KOG1407|consen  133 IDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL  212 (313)
T ss_pred             EEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce
Confidence            999998887777777777788998888888888888999999988888887766 4556778899999999999999999


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+||.+..-+.+.+..+.-+|..++||.+|++||+||+|..|-|=++++|..+.+++
T Consensus       213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence            9999999988889999999999999999999999999999999999999998777654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.7e-26  Score=180.59  Aligned_cols=205  Identities=24%  Similarity=0.438  Sum_probs=175.5

Q ss_pred             cceeeeC-ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~-H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      .++++.+ |...|-+++|+  +..+.+|+.|+.|..+|+.....  ... .+.+|...|..++|++++ ..++||+.|+.
T Consensus       251 ~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--~~~-~~~~H~qeVCgLkws~d~-~~lASGgnDN~  324 (484)
T KOG0305|consen  251 KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--VVS-TLQGHRQEVCGLKWSPDG-NQLASGGNDNV  324 (484)
T ss_pred             ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--hhh-hhhcccceeeeeEECCCC-CeeccCCCccc
Confidence            4456777 99999999998  78899999999999999975321  112 377899999999999985 68899999999


Q ss_pred             EEEEECCCCeeeeeee-ecCCeeEEEECCC-CCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           91 VRLWDARSGKCSQQAE-LSGENINITYKPD-GTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                      +.|||.........+. +...+..++|+|- ...||+|+  .|+.|++||..++..+.....+..|..+.|++..+.+++
T Consensus       325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s  404 (484)
T KOG0305|consen  325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS  404 (484)
T ss_pred             eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence            9999996666555443 4466778999994 55677765  589999999999999988888999999999999988887


Q ss_pred             Ee--CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          167 TT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       167 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +.  .++.+.+|++.+.+.+..+.+|...|..++++|+|..+++|+.|.++++|++-.
T Consensus       405 thG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  405 THGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            65  467999999999999999999999999999999999999999999999999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.9e-27  Score=176.95  Aligned_cols=203  Identities=20%  Similarity=0.354  Sum_probs=166.2

Q ss_pred             eeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .+.||...|.|++=+|.. ..+|||+.||.|+|||+....    +...+.+|.+.|..+++..   ..++++++|++|+.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~----~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE----CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----hhheeecccCceeeEEecc---cceEEecCCcceee
Confidence            457999999999999987 789999999999999997532    3446889999999999975   35679999999999


Q ss_pred             EECCCCe---------------------------eeeee-----------eec-CCeeEEEECCCC-CeEEEEcCCCcEE
Q 026765           94 WDARSGK---------------------------CSQQA-----------ELS-GENINITYKPDG-THIAVGNRDDELT  133 (233)
Q Consensus        94 wd~~~~~---------------------------~~~~~-----------~~~-~~~~~~~~~~~~-~~l~~~~~d~~i~  133 (233)
                      |.+....                           .+..+           ... ....++.|+|-. ..|+++++|+.|.
T Consensus       134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence            9743210                           00000           000 112357777754 4567788999999


Q ss_pred             EEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765          134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       134 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      +||++...+++.......-+.++|+|..-.++++.+|..++.+|.+. .+++....+|.+.|.+++|||.|+-+++||.|
T Consensus       214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD  293 (433)
T KOG0268|consen  214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD  293 (433)
T ss_pred             EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence            99999999998888888899999999888899999999999999875 35777788999999999999999999999999


Q ss_pred             CcEEEEecCCcE
Q 026765          213 SLVSLWDISEML  224 (233)
Q Consensus       213 g~v~iwd~~~~~  224 (233)
                      .+|+||.++.+.
T Consensus       294 ksIRIf~~~~~~  305 (433)
T KOG0268|consen  294 KSIRIFPVNHGH  305 (433)
T ss_pred             ceEEEeecCCCc
Confidence            999999998774

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=175.92  Aligned_cols=197  Identities=20%  Similarity=0.364  Sum_probs=166.1

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .+|+||++.|+++.|......+++|+.|.+||.||+.....  ... .++  ...+.+++..   ...++||-.|+.|++
T Consensus       255 ~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C--~kt-~l~--~S~cnDI~~~---~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  255 HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC--SKT-VLP--GSQCNDIVCS---ISDVISGHFDKKVRF  326 (459)
T ss_pred             hhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe--ecc-ccc--cccccceEec---ceeeeecccccceEE
Confidence            57899999999999998888899999999999999964221  111 122  2345555554   346789999999999


Q ss_pred             EECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----cCceeeEEEECCCCCEEEEEe
Q 026765           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      ||++...+.......+.+.++..++++..+.+++.|..+.+.|+++.+..+.+.     ..+.++.+.|+|++.|+++|+
T Consensus       327 wD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  327 WDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             EeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence            999999999998888999999999999999999999999999999877665443     345688999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEEeeecC--ceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                      .||.+++|+..+++..+.+.....  .|++++|+|.|.+|++++.++.+++|
T Consensus       407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999998887777665443  59999999999999999999999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=6.7e-27  Score=173.97  Aligned_cols=224  Identities=19%  Similarity=0.291  Sum_probs=172.2

Q ss_pred             CCCccceee-eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc----eeeEEEecCcCcEEEEEEcCCCCCEE
Q 026765            8 FKNLHSREY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLI   82 (233)
Q Consensus         8 ~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l   82 (233)
                      |+++..+.. .|.+.-+-|..|+|||++|+|||.||-|-||+..+....+    ...-.+--+.++|.|++|+.+ +.++
T Consensus       200 ~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMl  278 (508)
T KOG0275|consen  200 YPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEML  278 (508)
T ss_pred             chHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHh
Confidence            444444333 3567778899999999999999999999999986432111    011234568899999999976 5789


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECC
Q 026765           83 ATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNM  159 (233)
Q Consensus        83 ~sg~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~  159 (233)
                      ++|+.||.|++|.+++|.|.+.+.  ....+.++.|+.|+..+++++.|..+++--+.+++.+.... +..-++...|++
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~  358 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD  358 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC
Confidence            999999999999999999988775  34567889999999999999999999999988887776543 455689999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCceeeeEEeee--c---------------------------------------------C
Q 026765          160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--T---------------------------------------------A  192 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~---------------------------------------------~  192 (233)
                      +|..+++++.||++++|+..+.++..++..-  .                                             +
T Consensus       359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG  438 (508)
T KOG0275|consen  359 DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG  438 (508)
T ss_pred             CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC
Confidence            9999999999999999998765544333211  1                                             1


Q ss_pred             ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       193 ~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .-.+...+|.|.++.+.++|+.++-|...+|..-+++..+
T Consensus       439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence            1224457777888877888888888887777766666544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.3e-25  Score=182.29  Aligned_cols=213  Identities=18%  Similarity=0.278  Sum_probs=174.8

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc-----CCCCceee---EEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-----HGHGKVKD---IELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~-----~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      .+..+|.+.|+.++.+||++.++|||.|++|++|+..-     ..+.+...   ...-.-.+.|.+++++|++ ++|+.+
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVs  526 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVS  526 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEE
Confidence            45568999999999999999999999999999999742     11111100   0111235689999999985 688999


Q ss_pred             eCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCE
Q 026765           86 SGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~  163 (233)
                      --|.+++||-+.+-+.--.+..+ -++.++..+||++.+++|+.|..+++|-+.=+..... ..+...+.++.|-|....
T Consensus       527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~  606 (888)
T KOG0306|consen  527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHL  606 (888)
T ss_pred             eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccccee
Confidence            99999999999886654444433 4678999999999999999999999998865554433 234457899999999999


Q ss_pred             EEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      +.+++.|+.++.||....+.++.+.+|...|+|++.+|+|.+++++|.|..|++|...+-..+.
T Consensus       607 FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~l  670 (888)
T KOG0306|consen  607 FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILIL  670 (888)
T ss_pred             EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceee
Confidence            9999999999999999999999999999999999999999999999999999999987644443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.1e-25  Score=162.13  Aligned_cols=205  Identities=19%  Similarity=0.291  Sum_probs=158.6

Q ss_pred             CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus         9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      .+.+.+.|.||...|+.|+.+|-++.++|+|.|++||+||+........  +    +...-..++|+|+| -++|.|...
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l----~~~~~pi~AfDp~G-LifA~~~~~  161 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--L----NLSGRPIAAFDPEG-LIFALANGS  161 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--E----ecCCCcceeECCCC-cEEEEecCC
Confidence            5667789999999999999999999999999999999999974332211  1    22233456899975 566777766


Q ss_pred             CeEEEEECCCCe--eeeeeeec----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc----eeeEEEEC
Q 026765           89 KTVRLWDARSGK--CSQQAELS----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY----EVNEIAWN  158 (233)
Q Consensus        89 ~~i~iwd~~~~~--~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~  158 (233)
                      ..|++||++.-.  +-..+...    .+...+.|+|||++|+.+...+.+.+.|.-.+..........    -.....|+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            699999998642  22333322    234569999999999999999999999987776555444321    12467899


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCceeeeEEee-ecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      |+++++++++.||++.+|+.+++.....+.+ +..++.|+.|+|.-.+++++  +..+.+|=...
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence            9999999999999999999999999998888 78899999999976666655  46688886553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=5.9e-25  Score=168.65  Aligned_cols=203  Identities=21%  Similarity=0.333  Sum_probs=170.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..+|.||+..|+.+.|+|+...+++++.|..|+||.+....    .......|..+|+.+..+|.+ .+|++++.|++..
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~  328 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWA  328 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----CccccccccccceeeeeccCC-cEEEEecCCceEE
Confidence            46789999999999999999999999999999999985432    223456899999999999986 5778999999999


Q ss_pred             EEECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe
Q 026765           93 LWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      +.|++++.+.......   -...+.+|+|||..+.+|..|+.+++||+.....+.... +..+|..++|+.+|-++++++
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            9999999876554443   224578999999999999999999999998766554433 456899999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      .|+.|++||++..+-++++.... .+|.++.|++.|++|++++.|=.|++++-
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEec
Confidence            99999999999888777766433 47999999999999999988877777763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.7e-24  Score=159.71  Aligned_cols=206  Identities=21%  Similarity=0.401  Sum_probs=155.4

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE-cCCCCCEEEEEeCCCeEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~sg~~d~~i~iw   94 (233)
                      -.+|.+-|+++.|++.|.++|||+.|++|+|||.+............+.|.+.|-.+.| +|.-+..+++++.|++++||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35899999999999999999999999999999975444334455578899999999999 66777899999999999999


Q ss_pred             ECCCC-------eeeeeee---ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCC------Ceeeeeee--------c
Q 026765           95 DARSG-------KCSQQAE---LSGENINITYKPD--GTHIAVGNRDDELTILDVRK------FKPIHRRK--------F  148 (233)
Q Consensus        95 d~~~~-------~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~------~~~~~~~~--------~  148 (233)
                      .-...       +......   -.+.+..+.|.|.  |-.+++++.||.++||+.-.      ....+.++        .
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            75321       1111111   2345678999885  67889999999999998532      22223222        2


Q ss_pred             CceeeEEEECCC---CCEEEEEeCC-----CeEEEEecCC----ceeeeEEeeecCceeEEEECCCC----CEEEEeeCC
Q 026765          149 GYEVNEIAWNMT---GEMFFLTTGN-----GTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMG----RYFAVGSAD  212 (233)
Q Consensus       149 ~~~~~~~~~~~~---~~~~~~~~~~-----~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~----~~las~s~d  212 (233)
                      ..+..++.|++.   ..+|++|+.+     +.+.||....    ...+.++.+|+.+|+.|+|.|+-    ..||+|+.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            345678899864   3567777655     5788887643    23556677999999999999964    369999999


Q ss_pred             CcEEEEecCC
Q 026765          213 SLVSLWDISE  222 (233)
Q Consensus       213 g~v~iwd~~~  222 (233)
                      | |+||++..
T Consensus       249 g-v~I~~v~~  257 (361)
T KOG2445|consen  249 G-VRIFKVKV  257 (361)
T ss_pred             c-EEEEEEee
Confidence            9 99999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=2e-25  Score=181.24  Aligned_cols=220  Identities=19%  Similarity=0.319  Sum_probs=182.6

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC---------------------------CceeeE---
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------------------------GKVKDI---   60 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~---------------------------~~~~~~---   60 (233)
                      ...-++.||...|++++++.+...++||+ .+++++|+..+...                           +.+...   
T Consensus       364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  364 TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEee
Confidence            34457789999999999999988888876 58999998753210                           000000   


Q ss_pred             ------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-----Cee--------eeeeeecCCeeEEEECCCCC
Q 026765           61 ------ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-----GKC--------SQQAELSGENINITYKPDGT  121 (233)
Q Consensus        61 ------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~  121 (233)
                            ..++|.+.+-+++..|++. -+++||.|++|++||...     +..        ..++++...+.++.++||++
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence                  2458999999999999865 567999999999998631     111        13455667788999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCeee-eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765          122 HIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID  200 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~  200 (233)
                      +++++--|.++++|-+.+.+-. ..+-+..|+.++..+|+++.+++++.|.+|++|-++-+.+.+.+-+|...|.++.|-
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence            9999999999999998876543 335567899999999999999999999999999999899999999999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          201 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       201 p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      |....+.+++.|+.|+-||...-++++++.++
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH  633 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccc
Confidence            99999999999999999999999999988765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.7e-25  Score=163.29  Aligned_cols=213  Identities=20%  Similarity=0.321  Sum_probs=171.6

Q ss_pred             eCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCC----ce---eeE----EEecCcCcEEEEEEcCCCCCEEEE
Q 026765           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG----KV---KDI----ELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        17 ~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~----~~---~~~----~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      ..|.+.|+++...+ .|.+|+||++||.+.|||++.....    -+   .++    .-.+|+-.|.++.|-|-+..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            57999999999987 6899999999999999999753311    01   111    123688899999999998889999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCC---CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCC
Q 026765           85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT  160 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~  160 (233)
                      ++.|.+++|||..+-+....+..++.++.-+++|=   -..+++|..+..+++-|+.++.-.+.+. +...+..+.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            99999999999999888888888888888777773   3467889999999999999887666554 4568999999999


Q ss_pred             CCEE-EEEeCCCeEEEEecCCc-eeeeE--------------EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          161 GEMF-FLTTGNGTVEVLTYPSL-RPLDT--------------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       161 ~~~~-~~~~~~~~v~~~~~~~~-~~~~~--------------~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      .+++ ++|+.||.+++||.+.. -++..              =..|.+.|+.++|+.++.++++++.|..+++|+..+|+
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            9886 46788999999998643 12222              23477889999999999999999999999999999886


Q ss_pred             E-EEee
Q 026765          225 C-VRTF  229 (233)
Q Consensus       225 ~-i~~~  229 (233)
                      - +++|
T Consensus       280 ntl~~~  285 (397)
T KOG4283|consen  280 NTLREF  285 (397)
T ss_pred             cccccc
Confidence            4 4444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-25  Score=184.79  Aligned_cols=203  Identities=15%  Similarity=0.246  Sum_probs=173.8

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      |...+..|..++|+|...+++++-..|.|++||..-.    +..-++..|.++|+.++|||.++ +++||+.|-.|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEe
Confidence            4556788999999999999999999999999998642    23336788999999999999865 789999999999999


Q ss_pred             CCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeE
Q 026765           96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      ..+.+|..++..+ .-+..+.|++.-.+|++++.|.+|+||+..+.+.+.... +.+-+.+..|+|....+++++-|.+|
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence            9999988776655 345678999999999999999999999998887776543 67889999999999999999999999


Q ss_pred             EEEecCCce----------------------------e-eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          174 EVLTYPSLR----------------------------P-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       174 ~~~~~~~~~----------------------------~-~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ++||..-.+                            . -..+.+|+.+|+.++|+|.-..|++|+.|+.|++|.++..
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence            999963110                            0 1235689999999999999999999999999999999764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.5e-26  Score=182.96  Aligned_cols=214  Identities=17%  Similarity=0.314  Sum_probs=171.5

Q ss_pred             CccccEE---EEEECcC-CCEEEEEeCCCCEEEEecccCCCC--ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           18 GHKKKVH---SVAWNCT-GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        18 ~H~~~V~---~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .|...|.   ++..+.. +++|+|||.||.|++|++......  ......+..|.+.|+++....++ +.|+|++.|-+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTV   97 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTV   97 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceE
Confidence            5666677   6666654 456999999999999998643321  11233566899999999887654 467899999999


Q ss_pred             EEEECCCC--eeeeeeee-cCCeeEEEE-CCCCCeEEEEcCCCcEEEEEcCCCee--eee--------ee--cCceeeEE
Q 026765           92 RLWDARSG--KCSQQAEL-SGENINITY-KPDGTHIAVGNRDDELTILDVRKFKP--IHR--------RK--FGYEVNEI  155 (233)
Q Consensus        92 ~iwd~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~--------~~--~~~~~~~~  155 (233)
                      ++|+...+  -|+..+.. ..-+.++++ .++...+++|+-|+.|.+||+..+..  +..        ..  ....+.++
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            99998776  34444433 345667888 78888999999999999999975521  111        11  12358889


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +-+++|-.++.|+.++.+++||.++.+.+..+.+|..-|.++-.+++|+.+++||.||+|++||+.+..|+.+|..+
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence            99999988999999999999999999999999999999999999999999999999999999999999999999876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=8.2e-25  Score=179.97  Aligned_cols=204  Identities=23%  Similarity=0.381  Sum_probs=174.9

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      |...+.+..|.  ..++++++.|+++++|+...   .......+.||.+.|.++++.. +..++++|+.|+++++||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~---~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN---GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc---ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence            57778888887  78899999999999999754   2333445889999999999975 567889999999999999999


Q ss_pred             CeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ++|...+..+.... .+....+.++++|+.|.++++|++.+...++... +..+|.++..+  +.++++|+.|+.|++|+
T Consensus       281 g~C~~~l~gh~stv-~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  281 GECTHSLQGHTSSV-RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             CcEEEEecCCCceE-EEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            99999887554333 2233445577888999999999999888877766 77889999886  88999999999999999


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc-EEEEeeecC
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKL  232 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~-~~i~~~~~~  232 (233)
                      ..+++++..+.+|...|.++.+.+. .++.+|+.|++|++||+... +|+++|..+
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h  412 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH  412 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence            9999999999999999999988776 89999999999999999999 999988765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.5e-25  Score=164.54  Aligned_cols=211  Identities=18%  Similarity=0.302  Sum_probs=169.0

Q ss_pred             CCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      -...-+++|-.|..+|+++.|+|-...|+||+.|++||++|.......+  .........+|.++.|+|.| .+|+.|..
T Consensus       160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsG-efllvgTd  236 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSG-EFLLVGTD  236 (430)
T ss_pred             cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCC-ceEEEecC
Confidence            4445678899999999999999999999999999999999986422111  11111245689999999975 67788888


Q ss_pred             CCeEEEEECCCCeeeeeeee----cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCC
Q 026765           88 DKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMT  160 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~  160 (233)
                      -.++++||+.+-+|-.....    .+.+.++.+++.++..++++.||.|++||-.+.+.+..+.   -+.++.+..|+.+
T Consensus       237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence            88999999999887554432    3456679999999999999999999999977766654433   2467999999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEee-------------------------------------------------ec
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVA-------------------------------------------------HT  191 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------------------------------~~  191 (233)
                      ++++++.+.|..+++|.+.+++.+..+.+                                                 |.
T Consensus       317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn  396 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHN  396 (430)
T ss_pred             CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCC
Confidence            99999999999999999877766544432                                                 45


Q ss_pred             CceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +.+.++.-||.+.-+.+||.|..+++|--+
T Consensus       397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceEEEeCCCCCceeeecccceeeeeeec
Confidence            667788889999999999999999999654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.8e-25  Score=171.61  Aligned_cols=207  Identities=19%  Similarity=0.282  Sum_probs=169.7

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      -.++|.|++-+|.|.+|+.|.-.+.+.+|.+.++.   . ...+.+|-..|+++.|+.++ .+|+|||.||.|.+|.+-.
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---L-L~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---L-LNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecccc---H-HHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEe
Confidence            47889999999999999999899999999997633   1 22457899999999999775 5788999999999998631


Q ss_pred             ---------CeeeeeeeecC-CeeEEEE--CCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           99 ---------GKCSQQAELSG-ENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        99 ---------~~~~~~~~~~~-~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                               ......+..+. .+..+..  .+...++++++.|.++++||+..+..+....+...+.+++.+|.+..+.+
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI  234 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe
Confidence                     12222232222 3344444  33456899999999999999999998888888899999999999999999


Q ss_pred             EeCCCeEEEEecCCc----------------eeeeEEeeecC--ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          167 TTGNGTVEVLTYPSL----------------RPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~----------------~~~~~~~~~~~--~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      |+.+|.+.+.++...                ..+..+.+|..  .|+|++++-||..|++|+.||+|+|||+.+..|||+
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            999999998876421                23556778887  899999999999999999999999999999999988


Q ss_pred             ee
Q 026765          229 FT  230 (233)
Q Consensus       229 ~~  230 (233)
                      ++
T Consensus       315 l~  316 (476)
T KOG0646|consen  315 LQ  316 (476)
T ss_pred             Hh
Confidence            75

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=179.35  Aligned_cols=218  Identities=21%  Similarity=0.294  Sum_probs=182.0

Q ss_pred             CccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        10 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      +.+...+..|.+-|+.+....+++.|+|+|.|-+|++|+.......  +...+..|.+.|.++++...+..+++|||-|+
T Consensus        63 ~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~--c~stir~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   63 TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF--CMSTIRTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch--hHhhhhcccchheeeeecccCceeEEecCCCc
Confidence            3456778899999999999999999999999999999998754322  22346789999999999444567899999999


Q ss_pred             eEEEEECCCCe--eeeeee----------ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEE
Q 026765           90 TVRLWDARSGK--CSQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIA  156 (233)
Q Consensus        90 ~i~iwd~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~  156 (233)
                      .|.+||+.++.  ....+.          ....+++++..+.|..+++|+-.+.+++||.++.+.+..+. +...|..+.
T Consensus       141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll  220 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL  220 (735)
T ss_pred             cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence            99999999773  222111          12345778889999899999999999999999988776655 445688999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC-cEEEEee
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTF  229 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~-~~~i~~~  229 (233)
                      .+.+|..+++++.||+|++||+...+++.++..|.+.|+++..+|+=.++.+|+.||.|..=|+.. .++...|
T Consensus       221 ~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic  294 (735)
T KOG0308|consen  221 VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC  294 (735)
T ss_pred             EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee
Confidence            999999999999999999999999999999999999999999999999999999999999988876 4444444

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.8e-24  Score=160.22  Aligned_cols=209  Identities=17%  Similarity=0.321  Sum_probs=164.0

Q ss_pred             CCCCccceeeeCc--cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765            7 PFKNLHSREYTGH--KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus         7 ~~~~~~~~~~~~H--~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      ||...++.++.+|  .....|+.||+-|.+||.|+.||.|.|||+.+.+..+    .+.+|..+|.+++|+++| +.|++
T Consensus         8 ~f~~~~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar----~lsaH~~pi~sl~WS~dg-r~Llt   82 (405)
T KOG1273|consen    8 PFGVEYPEELTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR----MLSAHVRPITSLCWSRDG-RKLLT   82 (405)
T ss_pred             cccccChHhhceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhh----hhhccccceeEEEecCCC-CEeee
Confidence            5655666555543  2227899999999999999999999999998755332    477999999999999986 56779


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeeeec-------CceeeEEE
Q 026765           85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKF-------GYEVNEIA  156 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~  156 (233)
                      ++.|..|++||+..|.+.+.+.+..++..+.|+|.....+ +.-.+..-.+.++..  +.+....       .....+..
T Consensus        83 sS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~  160 (405)
T KOG1273|consen   83 SSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGV  160 (405)
T ss_pred             ecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccccccccccc
Confidence            9999999999999999999999999999999999654433 333333344444432  2222111       11233446


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      |++.|+++++|.+.|.+.+++..+.+++..+.... ..|..|.++..|++|+..+.|+.||.|++.+
T Consensus       161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            88999999999999999999999999888877655 6788999999999999999999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=175.00  Aligned_cols=201  Identities=20%  Similarity=0.329  Sum_probs=157.1

Q ss_pred             eCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           17 TGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .||.+.++|.+|+|+. ..++|++.|+++|||+++.... ....+.-   .+..-+++.++|++++ .+||+|+.||.|.
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQ  342 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCCcccCceeeecCCCc-chhhhcccCCcee
Confidence            5999999999999986 4789999999999999975432 1111111   2344578999999986 5689999999999


Q ss_pred             EEECCCCee-----eeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee----eecCceeeEEEECCCCC
Q 026765           93 LWDARSGKC-----SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFGYEVNEIAWNMTGE  162 (233)
Q Consensus        93 iwd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~  162 (233)
                      +|+.+....     +.... ....+.++.|+++|++|++-+.|+++++||++..+.--.    +...++-+.++|+|+.+
T Consensus       343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k  422 (641)
T KOG0772|consen  343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK  422 (641)
T ss_pred             eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence            999754322     11111 123567899999999999999999999999998653221    22234677899999999


Q ss_pred             EEEEEeC------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          163 MFFLTTG------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       163 ~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      ++++|..      .|++.+||..+.+.+..+.-....|..+.|+|.-+.|..|+.||+++||-
T Consensus       423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            9998864      57899999888888777766678889999999999999999999998874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-25  Score=182.18  Aligned_cols=208  Identities=20%  Similarity=0.293  Sum_probs=162.0

Q ss_pred             EEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           23 VHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        23 V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      +..|+|+. +.++|||++..|.|.+||+......+ ....+..|+..+++++|++..+++|+||++||+|++||++..+.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk-~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK-LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccch-hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            44677763 46889999999999999997532211 22346789999999999999999999999999999999998776


Q ss_pred             eeeeeec-CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeee--eeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          102 SQQAELS-GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       102 ~~~~~~~-~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ...+... ..+..|.|+|. +.+++++...|.+.+||+|....-.  ...+..++.++.|+|++.++++|+.|+.++||+
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            5554433 34567999984 6788899999999999999755422  223567899999999999999999999999999


Q ss_pred             cCCceeeeEEeee-cCceeEEEECCCCCE-EEEee--CCCcEEEEecCCcE-EEEeeec
Q 026765          178 YPSLRPLDTVVAH-TAGCYCIAIDPMGRY-FAVGS--ADSLVSLWDISEML-CVRTFTK  231 (233)
Q Consensus       178 ~~~~~~~~~~~~~-~~~v~~i~~~p~~~~-las~s--~dg~v~iwd~~~~~-~i~~~~~  231 (233)
                      ..+.+.......+ ..+|.+++|-|..++ ||+++  .|-.|+|||++.-. +-.+|.+
T Consensus       249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence            9876655444443 467899999998764 78777  57889999997543 2444443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.2e-24  Score=157.20  Aligned_cols=212  Identities=17%  Similarity=0.279  Sum_probs=171.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~d~~   90 (233)
                      +...|..|.++|++|+.  ++.++||||.|.+|+|||+....+    .-.+..|.+.|+++.|.+.-+ ..|+||+.||.
T Consensus        35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCc
Confidence            44678899999999996  599999999999999999965322    223557999999999977532 25679999999


Q ss_pred             EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      |.+|+.....+...+..+ +.+..++.+|.++..++.+.|+.++.||+..++.............+.|.|.|.+++++..
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec
Confidence            999999988777766544 4567799999999999999999999999988887766666667777999999999999887


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      + .|-+|.+++...+..+. ....+.|+.|- ++..|++|..|+.|++||.+++.+..+|..|
T Consensus       189 ~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH  248 (362)
T KOG0294|consen  189 N-KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH  248 (362)
T ss_pred             c-EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc
Confidence            7 57888877655444333 23456677775 5678999999999999999998888777655

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-24  Score=155.44  Aligned_cols=209  Identities=25%  Similarity=0.321  Sum_probs=155.8

Q ss_pred             ccceeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeC
Q 026765           11 LHSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASG   87 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~   87 (233)
                      .+..++.||.++|+.++|-+  .|.+|||+++||.|.||.-+..  ...+..+...|...|++++|.|.+- -+|++|+.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence            34578999999999999976  7999999999999999986543  2334456778999999999998753 46789999


Q ss_pred             CCeEEEEECCCC-eee-ee--eeecCCeeEEEECCC---C-----------CeEEEEcCCCcEEEEEcCCCeeeeee---
Q 026765           88 DKTVRLWDARSG-KCS-QQ--AELSGENINITYKPD---G-----------THIAVGNRDDELTILDVRKFKPIHRR---  146 (233)
Q Consensus        88 d~~i~iwd~~~~-~~~-~~--~~~~~~~~~~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~~~~~~~---  146 (233)
                      ||.|.|.+.+.. ... ..  ..+.-.+.+++|.|.   |           +.|++|+.|..++||+....+.....   
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~  204 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE  204 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence            999999987654 211 11  111223445777765   3           57999999999999998765433222   


Q ss_pred             ecCceeeEEEECCCC----CEEEEEeCCCeEEEEecCC-cee--eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          147 KFGYEVNEIAWNMTG----EMFFLTTGNGTVEVLTYPS-LRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       147 ~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      .+..=+..++|.|.-    .++++++.||++.||..+. .++  ...+......++.++||+.|+.|+.++.|++|++|.
T Consensus       205 ~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  205 GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            122337788998874    4688999999999997642 111  122233456789999999999999999999999997


Q ss_pred             cC
Q 026765          220 IS  221 (233)
Q Consensus       220 ~~  221 (233)
                      -+
T Consensus       285 e~  286 (299)
T KOG1332|consen  285 EN  286 (299)
T ss_pred             eC
Confidence            65

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6e-25  Score=178.91  Aligned_cols=209  Identities=22%  Similarity=0.351  Sum_probs=169.7

Q ss_pred             CCccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765            9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus         9 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      ++.....|..|+..|+++.|++.. .+|+|||.||+||+||+.....    ...+.+....|+++.|+|..++.++++..
T Consensus       122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecC
Confidence            344455789999999999999864 6899999999999999975321    22456788899999999999999999999


Q ss_pred             CCeEEEEECCCCe-eeeee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeeeeeecCceeeEEEECCCCCE
Q 026765           88 DKTVRLWDARSGK-CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        88 d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~  163 (233)
                      .|.+++||++... +...+ .+.+++.++.|+|++.+||+|+.|++++|||+...  .+.+.+....++..+.|-|...+
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            9999999998764 33333 34578899999999999999999999999998754  34556666788999999999887


Q ss_pred             EEEEe---CCCeEEEEecC-CceeeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecC
Q 026765          164 FFLTT---GNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       164 ~~~~~---~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~  221 (233)
                      .++.+   .|-.|++||.+ ..-|..++..|...++.++|.. +...|.+++.||+|..-.++
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            76554   48899999986 4567788899999999999965 34568899999988654443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.2e-24  Score=166.05  Aligned_cols=208  Identities=22%  Similarity=0.341  Sum_probs=163.0

Q ss_pred             eCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCC------ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           17 TGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG------KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      -.|.+.|+.+.+-|+.. .+||++..+.|.|||...+...      ....+.+.||...-++++|++.....|++|+.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            46999999999999875 6677888999999998654321      1223478899998899999998888899999999


Q ss_pred             eEEEEECCCCee-------eeeeeec-CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCC--Ceeeeee-ecCceeeEEEE
Q 026765           90 TVRLWDARSGKC-------SQQAELS-GENINITYKPD-GTHIAVGNRDDELTILDVRK--FKPIHRR-KFGYEVNEIAW  157 (233)
Q Consensus        90 ~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~~  157 (233)
                      .|++||+.....       ...+..+ ..+..++|++. ...+++++.|+.+.|||+|+  .++.+.. .+..++++++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            999999975432       1112222 33456889885 45678999999999999995  3333332 34678999999


Q ss_pred             CCCCCE-EEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcE
Q 026765          158 NMTGEM-FFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       158 ~~~~~~-~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~  224 (233)
                      +|-+.+ +++++.|+++.+||+++. +++.++.+|...|.+|.|+|.. ..||+++.|+.+.|||+.+..
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            987665 566778999999999864 5778899999999999999975 579999999999999997543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.1e-25  Score=167.57  Aligned_cols=200  Identities=23%  Similarity=0.331  Sum_probs=165.4

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEE-ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .|.-|..+|.|+.|+.|..+||||+.||.|+||.+.+..  ++.  ++ ++|+..|+++.|+.+++. ++|++.|.++++
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~--ClR--rFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRi  332 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ--CLR--RFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRI  332 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch--HHH--HhhhhhccCeeEEEEccCcch-hhcccccceEEE
Confidence            356789999999999999999999999999999997532  221  23 479999999999998765 469999999999


Q ss_pred             EECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-----------------------
Q 026765           94 WDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-----------------------  149 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------------  149 (233)
                      .-+..|++...+..+.. +....|.++|+++++++.|+++++|+..+.+.+...+..                       
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence            99999998887765543 445889999999999999999999997654322111100                       


Q ss_pred             -------------------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC
Q 026765          150 -------------------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR  204 (233)
Q Consensus       150 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  204 (233)
                                               ..--+...+|.|+++.+.++|+.++.+...++..-.++..|...|..++-+|..+
T Consensus       413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN  492 (508)
T ss_pred             CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence                                     0011345688899999999999999999999999899999999999999999999


Q ss_pred             EEEEeeCCCcEEEEe
Q 026765          205 YFAVGSADSLVSLWD  219 (233)
Q Consensus       205 ~las~s~dg~v~iwd  219 (233)
                      .||+-++||.+++|.
T Consensus       493 llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 LLASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhhcccchhhhcC
Confidence            999999999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=2.1e-25  Score=160.40  Aligned_cols=208  Identities=19%  Similarity=0.300  Sum_probs=174.1

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      -+|.||+++|+....+.+..+.||+++|-+-||||.-+...  +.   -..|+..|..++|+.+ .+.|++|+.++.+||
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lh---sf~hkhivk~~af~~d-s~~lltgg~ekllrv  126 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LH---SFEHKHIVKAVAFSQD-SNYLLTGGQEKLLRV  126 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hh---hhhhhheeeeEEeccc-chhhhccchHHHhhh
Confidence            47899999999999999999999999999999999865321  11   2258888999999976 567789999999999


Q ss_pred             EECCCCeeee-ee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765           94 WDARSGKCSQ-QA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        94 wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ||++..+... .+ ...+.+..+.|....+.|++...|+.+++||.+++..++.+....+++++..+++|+++.++.+ +
T Consensus       127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-s  205 (334)
T KOG0278|consen  127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-S  205 (334)
T ss_pred             hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-c
Confidence            9998765322 22 2345566788888888999999999999999999999999999999999999999988777654 4


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .|.+||..+...++.+. ..-.|.+.+++|+...+++|++|..++.||..+++.+-.|
T Consensus       206 sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             eeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence            79999999888877654 3446789999999999999999999999999999887665

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.9e-24  Score=160.59  Aligned_cols=207  Identities=21%  Similarity=0.322  Sum_probs=167.6

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..++|.||+..|+.++-......+.|++.|.+.+||.++...    +...+.||.+.|+++.|++. +.++++|+.|++.
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~----CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA----CLATYTGHTGSVNSIKFHNS-GLLLLTASGDETA  214 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc----ceeeecccccceeeEEeccc-cceEEEccCCcch
Confidence            457899999999999988777899999999999999998643    45678999999999999986 4688999999999


Q ss_pred             EEEE------CCCCe------------e----------------------eeeeeec-CCeeEEEECCCCCeEEEEcCCC
Q 026765           92 RLWD------ARSGK------------C----------------------SQQAELS-GENINITYKPDGTHIAVGNRDD  130 (233)
Q Consensus        92 ~iwd------~~~~~------------~----------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~  130 (233)
                      +||.      +....            +                      ...+..+ ..+.++.|...|..+++++.|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            9996      21100            0                      0000001 1223455777889999999999


Q ss_pred             cEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEE
Q 026765          131 ELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                      +..+||++++++++.+. +..+.+.++-+|+.++++.++.|-+.++||++.. ..+..|.+|...|+++.|.-+ ..+++
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVS  373 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVS  373 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceee
Confidence            99999999999887644 5678889999999999999999999999999743 456678899999999999865 57899


Q ss_pred             eeCCCcEEEEecCCcE
Q 026765          209 GSADSLVSLWDISEML  224 (233)
Q Consensus       209 ~s~dg~v~iwd~~~~~  224 (233)
                      ||.|.+|+|||++.+.
T Consensus       374 gSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMR  389 (481)
T ss_pred             cCCCceEEEeeecccc
Confidence            9999999999998664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=150.39  Aligned_cols=207  Identities=21%  Similarity=0.308  Sum_probs=157.2

Q ss_pred             CCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus         6 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      .|.+...+++|.||...|..++.+.|+..+++|+.|+.|.+||+++..    ...++++|...|+.+.|+.+ ...++||
T Consensus        45 Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNee-sSVv~Sg  119 (307)
T KOG0316|consen   45 NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEE-SSVVASG  119 (307)
T ss_pred             cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCc-ceEEEec
Confidence            356666789999999999999999999999999999999999998643    23368999999999999975 5688899


Q ss_pred             eCCCeEEEEECCCCe--eeeee---------------------------------------eecCCeeEEEECCCCCeEE
Q 026765           86 SGDKTVRLWDARSGK--CSQQA---------------------------------------ELSGENINITYKPDGTHIA  124 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~--~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~  124 (233)
                      +.|..+++||-+...  +++.+                                       .+..++.++.|+++++..+
T Consensus       120 sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~L  199 (307)
T KOG0316|consen  120 SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSL  199 (307)
T ss_pred             cccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEE
Confidence            999999999976542  11110                                       0122445677888888888


Q ss_pred             EEcCCCcEEEEEcCCCeeeeeeecCc---eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEEC
Q 026765          125 VGNRDDELTILDVRKFKPIHRRKFGY---EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAID  200 (233)
Q Consensus       125 ~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~  200 (233)
                      +++.|+.+++.|-.+++.+..++-..   --...+++.....++.+++||.+.+||+.+...+..+..+... |.+++++
T Consensus       200 a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~h  279 (307)
T KOG0316|consen  200 ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCH  279 (307)
T ss_pred             EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecc
Confidence            88888888888877766655444210   1223456666777889999999999999988888888877776 7899999


Q ss_pred             CCCCEEEEeeCCCcEEEE
Q 026765          201 PMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       201 p~~~~las~s~dg~v~iw  218 (233)
                      |.-.-|.++... .+..|
T Consensus       280 p~~~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  280 PTMDDFITATGH-GDLFW  296 (307)
T ss_pred             cCccceeEecCC-ceece
Confidence            988777766533 34444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=162.09  Aligned_cols=192  Identities=26%  Similarity=0.470  Sum_probs=157.0

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeE------------------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDI------------------ELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      |+++|.|..|..|-|||+.-... ....+                  .-.+|+++|.+++|+..-.++|+|||.|++|++
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~-v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDA-VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccc-cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            67999999999999999853211 00111                  123799999999999888899999999999999


Q ss_pred             EECCCCeeeeeeee-cCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeee-eeeecCceeeEEEECCCCC-EEEEEeC
Q 026765           94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGE-MFFLTTG  169 (233)
Q Consensus        94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  169 (233)
                      ||+.++++...+.. .+.+.++.|+|. +.++++|+.|+++.+.|.|..... ...+....+..+.|++... .+++++.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999999888874 466778999885 678899999999999999853222 2345567899999988764 5677889


Q ss_pred             CCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcE
Q 026765          170 NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       170 ~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~  224 (233)
                      ||+++-+|.+.. +++.++..|..+|.++++++.-. +|++++.|+.|++|++....
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            999999999865 89999999999999999998764 68999999999999987543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.4e-23  Score=162.07  Aligned_cols=201  Identities=22%  Similarity=0.349  Sum_probs=158.5

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .+|...|.+++.++||++||||+.|+.|.||+..+..  .+  ..+++|.+.|.+++|-. ++.-+++++.|..|++|++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e--hv--~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~  273 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE--HV--KVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSI  273 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc--hh--hcccccccceeeeeeec-CccceeeeecCCceEEEeh
Confidence            3899999999999999999999999999999986532  22  24789999999999964 4566789999999999999


Q ss_pred             CCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765           97 RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      ..-....++.. +..+..+....-.+.+.+|+.|.++++|++.....+........+.+++|- +..-+++|+.+|.|.+
T Consensus       274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEE
Confidence            86554444333 344555655555677778889999999999544433333344467777774 5667899999999999


Q ss_pred             EecCCceeeeEEe-eec-----------CceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          176 LTYPSLRPLDTVV-AHT-----------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       176 ~~~~~~~~~~~~~-~~~-----------~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      |++...+++.... +|.           ..|++++..|...++|+||.+|.|++|-+.++
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            9998777766543 232           37899999999999999999999999999887

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.4e-25  Score=180.05  Aligned_cols=210  Identities=22%  Similarity=0.384  Sum_probs=180.9

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +++..|...|.++..-..+..+++|+.|..+-+|.+....    ....+.+|..+|.++.|++. ..+|++|+.+|+|++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~   96 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKV   96 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCcceeeecCcc-hhhhcccccCCceee
Confidence            4777899999999987778899999999999999875321    22357899999999999986 568899999999999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ||+...+..+.+..+ .....+.|+|-+.+.+.|+.|..+++||.+.....+.+. +...+..+.|+|+|++++.++.|.
T Consensus        97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen   97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            999988776665544 345678999999999999999999999999777766655 344688899999999999999999


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      .+++||...++.+..|..|...+.++.|+|..-.+++||.|++|++||+++-+.|-.
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            999999999999999999999999999999998999999999999999997665543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=8.1e-24  Score=159.23  Aligned_cols=210  Identities=19%  Similarity=0.351  Sum_probs=164.0

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC------------------------CC-ceeeE-------
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------------------------HG-KVKDI-------   60 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~------------------------~~-~~~~~-------   60 (233)
                      .++|..|.+.|+.|+++.  ..++|+|.|++||.|-++...                        .+ .+..+       
T Consensus       102 ~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~P  179 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNP  179 (433)
T ss_pred             hheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCc
Confidence            467889999999999976  889999999999999742110                        00 00000       


Q ss_pred             --EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           61 --ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        61 --~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                        .+.--.+.+.++.|+|....+|++|+.|+.|.+||+++..+............++|+|.+-.+.++.+|..+..+|++
T Consensus       180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhh
Confidence              111223567888899988889999999999999999999888877777777789999988889999999999999998


Q ss_pred             CCee-eeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765          139 KFKP-IHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (233)
Q Consensus       139 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v  215 (233)
                      ..+. +... .+...+.+++|+|.|+-+++|+-|.+|+||....+.+-..+ ..--..|.|+.||.|.+|+++||.|+.|
T Consensus       260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             hhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcce
Confidence            7543 3222 24457899999999999999999999999988655432221 1122468999999999999999999999


Q ss_pred             EEEecCCcE
Q 026765          216 SLWDISEML  224 (233)
Q Consensus       216 ~iwd~~~~~  224 (233)
                      ++|...-.+
T Consensus       340 RlWka~Ase  348 (433)
T KOG0268|consen  340 RLWKAKASE  348 (433)
T ss_pred             eeeecchhh
Confidence            999986443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=4.9e-23  Score=155.73  Aligned_cols=213  Identities=20%  Similarity=0.333  Sum_probs=164.1

Q ss_pred             CCCccceeeeCccccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCC------------CceeeEEEecCcCcEEEEE
Q 026765            8 FKNLHSREYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGH------------GKVKDIELRGHADSVDQLC   73 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~------------~~~~~~~~~~h~~~v~~~~   73 (233)
                      ++++..+.. +|.+.++.+.-++.++  +.|+-+..|.|+||++.+.-.            .......+.+|...-+.++
T Consensus       140 ~P~~~~~~i-~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld  218 (440)
T KOG0302|consen  140 KPQIEMKSI-PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD  218 (440)
T ss_pred             ccccccccc-ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence            344443333 5888888888877654  556667899999999753210            0112345778999999999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEECCCCeeee---eee-ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCe---eeee
Q 026765           74 WDPKHADLIATASGDKTVRLWDARSGKCSQ---QAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFK---PIHR  145 (233)
Q Consensus        74 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~---~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~---~~~~  145 (233)
                      |+|.....|+||..-+.|++|...++....   .+. ....+..++|+|.. ..|++|+-|++|+|||+|...   .+..
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~  298 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST  298 (440)
T ss_pred             cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence            999665667899888999999988876432   121 23345569999964 578899999999999999863   3344


Q ss_pred             eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC---ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecC
Q 026765          146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~  221 (233)
                      ..++..|+.++|+..-.++++|+.||+++|||++.   ++++..|.-|..+|++|.|+|.. ..|++++.|..|.|||+.
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            45677899999999988999999999999999975   45778899999999999999965 568899999999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.2e-24  Score=167.63  Aligned_cols=200  Identities=21%  Similarity=0.299  Sum_probs=171.9

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ++..-.-..++++.+||.+..++++.||.|+|||+..+    +....++||++.+.|+.+++++.++ -+|+-|.+||.|
T Consensus       504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcW  578 (705)
T KOG0639|consen  504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCW  578 (705)
T ss_pred             hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCcee-ecCCCccceeeh
Confidence            34444567889999999999999999999999999642    2345789999999999999987665 599999999999


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      |+++++..+...+...++++.++|++.++++|.+++.+.+......+....-.+..-|.++.|.+.|+++++.+.|+.+.
T Consensus       579 DlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLn  658 (705)
T KOG0639|consen  579 DLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  658 (705)
T ss_pred             hhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhh
Confidence            99999988888888899999999999999999999999988876655544445566789999999999999999999999


Q ss_pred             EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      .|..+-+..+.... ..+.|.++.+|-++++++|||.|.+..||.+
T Consensus       659 awrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  659 AWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99987777665433 4568999999999999999999999999865

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.9e-23  Score=160.71  Aligned_cols=205  Identities=24%  Similarity=0.452  Sum_probs=161.0

Q ss_pred             eCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           17 TGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      .+|+.+|.+++|+.. .+.|||||.|.+|++||++....    ...+..|...|.+++|+|..+.+|++|+.|++|.+.|
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence            479999999999976 56899999999999999986432    2245578999999999999999999999999999999


Q ss_pred             CCCC-eeeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCC-eeeeeee-cCceeeEEEECCCC-CEEEEEeCC
Q 026765           96 ARSG-KCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGN  170 (233)
Q Consensus        96 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~  170 (233)
                      .|.. .....+.+.+.+..++|.|.. ..++++..||.++-+|+|+. +++...+ +..+|.+++++..- .++++++.+
T Consensus       316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence            9953 334566778888899998865 45678889999999999986 6666554 56789999887654 457778899


Q ss_pred             CeEEEEecCCceeeeEEeeec---CceeEEEECCCCC-EEEEeeCCCcEEEEecCCcEEE
Q 026765          171 GTVEVLTYPSLRPLDTVVAHT---AGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~---~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~i  226 (233)
                      +.+++|++....+-.. ..|.   +...|.++.|+-. +||.|+..+.++|||+.+...+
T Consensus       396 ~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ceEEEEeecCCCCccc-ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            9999999864433111 1121   2345778888765 5788888899999999877654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=9.9e-23  Score=150.08  Aligned_cols=191  Identities=23%  Similarity=0.381  Sum_probs=143.3

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i~   92 (233)
                      +....|.++|.+++|+.||..+++|+.|+.+++||+...     +..++..|..+|..+.|-+.. ..+|++|++|++|+
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-----CeeeeeecccceeEEEEecCCCcceeEeccccccee
Confidence            344579999999999999999999999999999999753     233567899999999997643 24789999999999


Q ss_pred             EEECCCCeeeeeeeecCCeeE------------------------------------------EEECCCCCeEEEEcCCC
Q 026765           93 LWDARSGKCSQQAELSGENIN------------------------------------------ITYKPDGTHIAVGNRDD  130 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~~d~  130 (233)
                      .||.+....+.+..+....++                                          ++..++....+.|+-.|
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG  220 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG  220 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence            999998776665555443332                                          33333444445555555


Q ss_pred             cEEEEEcCCCeeeeeee---c---------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEE
Q 026765          131 ELTILDVRKFKPIHRRK---F---------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA  198 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~  198 (233)
                      ++.+-.+....+.....   +         -+.|++++|+|....+++.++||+..+||-+....+++...|..+|+|.+
T Consensus       221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~  300 (347)
T KOG0647|consen  221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS  300 (347)
T ss_pred             eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence            55554443321111110   0         13578899999999999999999999999887778888888999999999


Q ss_pred             ECCCCCEEEEe
Q 026765          199 IDPMGRYFAVG  209 (233)
Q Consensus       199 ~~p~~~~las~  209 (233)
                      |+.+|.++|-+
T Consensus       301 fn~~G~ifaYA  311 (347)
T KOG0647|consen  301 FNRNGSIFAYA  311 (347)
T ss_pred             ecCCCCEEEEE
Confidence            99999988744

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-22  Score=155.77  Aligned_cols=202  Identities=19%  Similarity=0.281  Sum_probs=169.8

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      .++|+++.|+|....|++|+.|++++||.++......++.+.+  ...+|.+.+|.|+|...+++++..+.+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l--~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL--EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee--ccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            6789999999999999999999999999998655555555544  35689999999998768889999999999999887


Q ss_pred             eeeeeeeecC----CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765          100 KCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus       100 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      +........+    .......+|++++|+..+..|.|.+....+.+.+...+....+..+.|+.+++.+++.+++|.|.+
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            6543222211    223467799999999999999999999999999999998889999999999999999999999999


Q ss_pred             EecCCceeeeEEeeecC-ceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          176 LTYPSLRPLDTVVAHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ||++...++..+...+. .-++++.++++.|||+||..|.|.|||.++.
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            99998888877764332 2367888999999999999999999997654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=9.8e-25  Score=176.59  Aligned_cols=194  Identities=23%  Similarity=0.379  Sum_probs=167.6

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .|.+|..+|.+|.|+++...|+.|+.||+||+||++...    ....+.||...+.++.|+|-+ .+.++|+.|..+++|
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk----~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iw  139 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK----IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIW  139 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh----hhhhhhccccCcceeeeccce-EEeccccccccceeh
Confidence            488999999999999999999999999999999998532    122577999999999999975 567899999999999


Q ss_pred             ECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCe
Q 026765           95 DARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      |++...|......+.. +..+.|+|+|++++++++|..+++||+..++....++ +...+..+.++|..-+++.|+.|++
T Consensus       140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT  219 (825)
T ss_pred             hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence            9997778776654433 3457999999999999999999999998888777666 5567888889998888999999999


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      +++||+++.+.+........+|.+.+|+|+++.+++|..+.
T Consensus       220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            99999999998888777788999999999999999887664

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=1.8e-22  Score=153.57  Aligned_cols=218  Identities=21%  Similarity=0.385  Sum_probs=168.2

Q ss_pred             eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCc---eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ..+.||+++|..++|+|.+ ..+||||.|.+|+||++.......   -...++.||...|.-++|||.-.++|+|++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            3568999999999999975 568999999999999985432211   124578899999999999999899999999999


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-c-CceeeEEEECCCCCEEEEE
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F-GYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  167 (233)
                      +|.+||+.++.....+.+...++++.|+.+|.++++.+.|++|+|||.++.+.+.... + +.....+.|-.+++.+.+|
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999887777767778899999999999999999999999999998887652 2 3345566777788855544


Q ss_pred             e---CCCeEEEEecCCce-eeeEEe-eecCceeEEEECCCCCEEE-EeeCCCcEEEEecCCcE----EEEeeec
Q 026765          168 T---GNGTVEVLTYPSLR-PLDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML----CVRTFTK  231 (233)
Q Consensus       168 ~---~~~~v~~~~~~~~~-~~~~~~-~~~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~~----~i~~~~~  231 (233)
                      -   .+.++.+||....+ ++.... ...++|.-=-|+|+...+. +|-.|+.||-|.+....    .+.+|+.
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S  308 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS  308 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence            3   46889999876533 322211 2344555556788887764 56679999999997654    3555553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2e-22  Score=149.82  Aligned_cols=208  Identities=23%  Similarity=0.360  Sum_probs=163.6

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecc-----cC----------------------------C---CC
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE-----PH----------------------------G---HG   55 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~-----~~----------------------------~---~~   55 (233)
                      +...|.||.+.|++++|++++.+++|++.|++..||...     +.                            .   .-
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti  261 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI  261 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence            345799999999999999999999999999999999620     00                            0   00


Q ss_pred             ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEE
Q 026765           56 KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTI  134 (233)
Q Consensus        56 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i  134 (233)
                      ++...++.+|...|.+..|-.. +..+++|++|.+..+||++++.....+..+.. ..-++-+|..+.+++.+.|.+.++
T Consensus       262 RvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL  340 (481)
T KOG0300|consen  262 RVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL  340 (481)
T ss_pred             eeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEe
Confidence            2234568899999999999764 45678999999999999999998887765533 344777899999999999999999


Q ss_pred             EEcCCC-eeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCcee-eeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          135 LDVRKF-KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       135 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      ||.+.. ..+...+ +...++++.|..+ ..+++++.|.++++||+++++. +.++. -.++++-++.+..++.+|.--.
T Consensus       341 WDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhD  418 (481)
T KOG0300|consen  341 WDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHD  418 (481)
T ss_pred             ccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccC
Confidence            999732 2222222 3346888888754 5688999999999999987664 44433 5678899999998889999999


Q ss_pred             CCcEEEEecCC
Q 026765          212 DSLVSLWDISE  222 (233)
Q Consensus       212 dg~v~iwd~~~  222 (233)
                      ++.|++||++-
T Consensus       419 NRqvRlfDlnG  429 (481)
T KOG0300|consen  419 NRQVRLFDLNG  429 (481)
T ss_pred             CceEEEEecCC
Confidence            99999999983

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.4e-22  Score=153.86  Aligned_cols=216  Identities=16%  Similarity=0.222  Sum_probs=171.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC--cee----------eEEE--ecCcCcEEEEEEcCCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVK----------DIEL--RGHADSVDQLCWDPKH   78 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~--~~~----------~~~~--~~h~~~v~~~~~~~~~   78 (233)
                      +..+..|.-+|.+++++|++++.++++.|++|.-|++......  .+.          ..+.  ++|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3566789999999999999999999999999999998653311  000          0111  3788999999999985


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEE
Q 026765           79 ADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIA  156 (233)
Q Consensus        79 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~  156 (233)
                       ++|++|+.|..|.|||.++.+..+.+..+ +.+.+++|....+.+++++.|..+.+|++.....+.. +-+...+..+.
T Consensus       215 -kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  215 -KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             -cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence             68899999999999999998766665544 5677899988888999999999999999876554432 22334566666


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      --...+.+.+|+.|.++++|..+. +....+.+|.+.+-|++|-. ..++++||.||.|.+|++....++-++..
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             hhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence            556677788888999999999843 44556788988999999965 57999999999999999999988877653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=5.7e-22  Score=166.85  Aligned_cols=206  Identities=21%  Similarity=0.330  Sum_probs=161.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..|.+|.+.|..++|+|++.+|||+|.|++|.||+....  .  ....+.+|...|-.+.|+|.| ++|+|-+.|++|+|
T Consensus       123 ~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~--~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikv  197 (942)
T KOG0973|consen  123 SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--E--LLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKV  197 (942)
T ss_pred             EEEecCCCccceeccCCCccEEEEecccceEEEEccccc--e--eeeeeecccccccceEECCcc-CeeeeecCCceEEE
Confidence            568899999999999999999999999999999998754  2  233578999999999999986 68899999999999


Q ss_pred             EECCCCeeeeeeee-------cCCeeEEEECCCCCeEEEEcC----CCcEEEEEcCCCeeeee-eecCceeeEEEECCC-
Q 026765           94 WDARSGKCSQQAEL-------SGENINITYKPDGTHIAVGNR----DDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT-  160 (233)
Q Consensus        94 wd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~-  160 (233)
                      |.+.+..+......       ......+.|+|||++|++...    -..+.|.+-.+++.-.. .-+..++.++.|+|. 
T Consensus       198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence            99766554443221       122356899999999997653    23577777655553332 335557888888762 


Q ss_pred             ------------CC----EEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          161 ------------GE----MFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       161 ------------~~----~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                                  .+    .+++|+.|+.+.||.....+|+.... -....|..++|+|||..|..+|.||+|.+..+.+.
T Consensus       278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                        11    56788999999999988777765432 24568999999999999999999999999998865


Q ss_pred             E
Q 026765          224 L  224 (233)
Q Consensus       224 ~  224 (233)
                      +
T Consensus       358 E  358 (942)
T KOG0973|consen  358 E  358 (942)
T ss_pred             H
Confidence            3

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-21  Score=155.70  Aligned_cols=206  Identities=21%  Similarity=0.374  Sum_probs=165.3

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      +.+.|+++.|+++|.+||.|..+|.|.|||.....  .+.  .+.+ |...|.+++|.   ...+.+|+.|+.|..+|++
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~--~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTR--TLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccc--cccCCcCceeEEEecc---CceEEEecCCCcEEEEEEe
Confidence            38899999999999999999999999999987532  222  3455 99999999997   3578899999999999999


Q ss_pred             CCeeeee-eeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCC-EEEEEe--CCC
Q 026765           98 SGKCSQQ-AELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGE-MFFLTT--GNG  171 (233)
Q Consensus        98 ~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~--~~~  171 (233)
                      ..+.... ...+ .++-.+.|++|+.++++|+.|+.+.|||....++... ..+...|-.++|+|-.. .+++|+  .|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            8764433 3333 3455589999999999999999999999966555544 44667899999999754 555553  589


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE--eeCCCcEEEEecCCcEEEEeeecC
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las--~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .+++|+..+++.+..+. -...|.++.|++..+-|++  |-.++.|.||+..+...+..+.+|
T Consensus       369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH  430 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH  430 (484)
T ss_pred             EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence            99999999888887654 4567899999998866554  446788999999998888887765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.5e-20  Score=145.32  Aligned_cols=211  Identities=14%  Similarity=0.182  Sum_probs=153.0

Q ss_pred             ceeeeCccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+.+|. .+.+++|+|+++.+ ++++.|+.|++||.....   . ...+..+.. +..++|+|++..++++++.|+.+
T Consensus        24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~-~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l   97 (300)
T TIGR03866        24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---V-IGTLPSGPD-PELFALHPNGKILYIANEDDNLV   97 (300)
T ss_pred             EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---E-EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence            34555554 46789999999976 677789999999986421   1 112333333 46788999876565666778999


Q ss_pred             EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe-C
Q 026765           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-G  169 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  169 (233)
                      ++||+++.+....+........++++|++.+++++..++ .+.+||.++.+.............+.|+++++.+++++ .
T Consensus        98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866        98 TVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             EEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence            999999877666555444456799999999999888765 46778988776655444445567889999999886654 5


Q ss_pred             CCeEEEEecCCceeeeEEeeec-----C--ceeEEEECCCCCEEEE-eeCCCcEEEEecCCcEEEEee
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHT-----A--GCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~-----~--~v~~i~~~p~~~~las-~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      ++.+.+||..+.+.+..+..+.     .  ....++|+|++++++. .+.++.+.+||+++++.++.+
T Consensus       178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~  245 (300)
T TIGR03866       178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL  245 (300)
T ss_pred             CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            8999999998887766554321     1  2346889999998544 455678999999988877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.3e-23  Score=175.12  Aligned_cols=212  Identities=17%  Similarity=0.308  Sum_probs=165.6

Q ss_pred             cccEEEEEECcCCCE----EEEEeCCCCEEEEecccC--CCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           20 KKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPH--GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~----l~s~~~D~~v~vW~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ...-+.|+|.+.|..    +|.|..||.|-+|+...-  +...........|.+.|..+.|++..+++|+||+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456789999988776    888889999999998652  21111122456799999999999999899999999999999


Q ss_pred             EECCCCeeeeee---eecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeecC---ceeeEEEECCCCC-EEE
Q 026765           94 WDARSGKCSQQA---ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGE-MFF  165 (233)
Q Consensus        94 wd~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~  165 (233)
                      ||+...+.....   .....+.+++|+..- +.|++++.++++.|||+|..+++......   ..+..+.|||++- .++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            999875433222   234567788997654 56778889999999999988776554432   3477899999975 355


Q ss_pred             EEeCC---CeEEEEecCC-ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          166 LTTGN---GTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       166 ~~~~~---~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ++++|   -.|.+||++. ..+.+.+.+|..+|.+++|++.+ ++|++++.|+.|.+||.++++.+.+|..
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            55544   5788899763 45777888999999999999987 7899999999999999999999988753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=6.4e-22  Score=149.76  Aligned_cols=206  Identities=20%  Similarity=0.393  Sum_probs=155.3

Q ss_pred             cceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      +..++.+|.+.=++|+|||-- ..|+||..-+.|++|.+.. +.-.+-...+.+|+..|-.++|+|....+|+||+.|++
T Consensus       203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             ceEEecccCccceeeecccccccccccCccccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            446889999999999999954 4588999899999999865 22223334567899999999999999999999999999


Q ss_pred             EEEEECCCCe---eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---eee-eecCceeeEEEECCCCC-
Q 026765           91 VRLWDARSGK---CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHR-RKFGYEVNEIAWNMTGE-  162 (233)
Q Consensus        91 i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~-~~~~~~~~~~~~~~~~~-  162 (233)
                      |+|||+|.+.   ++....+.+.+..+.|+..-..|++|+.||.+.|||+|+.+.   +-. ..+..+|+++.|+|... 
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            9999999883   333333445566689988877999999999999999997653   333 34577899999998754 


Q ss_pred             EEEEEeCCCeEEEEecCCce----------------eeeEEeee--cCceeEEEECCCCC-EEEEeeCCCcEEEEe
Q 026765          163 MFFLTTGNGTVEVLTYPSLR----------------PLDTVVAH--TAGCYCIAIDPMGR-YFAVGSADSLVSLWD  219 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~--~~~v~~i~~~p~~~-~las~s~dg~v~iwd  219 (233)
                      .+++++.|.++.+||+..-.                +-+.+-.|  ...+..+.|+++-. +|++.+.|| +.||.
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            56777889999999973110                01112234  34577889998754 677777787 45543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=9.7e-23  Score=159.43  Aligned_cols=208  Identities=18%  Similarity=0.305  Sum_probs=173.3

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      ..+-|+++...|||.-|++|+.-.+|.|||+.... .++ ..++..-.-.++.++.+|+ .++++++..||.|.|||+++
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-pri-kaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRI-KAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCC-cch-hhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEccc
Confidence            35668899999999999999999999999996532 222 2345444456888999997 57888999999999999999


Q ss_pred             Ceeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765           99 GKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ...++.+..+ ....|+.++++|..|.+|+-|.+++.||++..+......+...|.++..+|+++.+++|-+++.+.+..
T Consensus       541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEe
Confidence            8888877654 445678999999999999999999999999988877777778899999999999999999999999987


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ....+. ..+..|.+.|.++.|.+.|+++++.+.|..+..|...-|..|-...
T Consensus       621 ~skp~k-yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  621 TSKPEK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             cCCccc-eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence            654333 3456789999999999999999999999999999987666554433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-20  Score=156.95  Aligned_cols=204  Identities=16%  Similarity=0.289  Sum_probs=159.7

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccC-CCCc---------------------------eeeEEE-------
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-GHGK---------------------------VKDIEL-------   62 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~-~~~~---------------------------~~~~~~-------   62 (233)
                      +|+..-+.|+|.|+|+.+++++.||.||+|+.... ....                           +....+       
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            69999999999999999999999999999986432 1000                           000111       


Q ss_pred             --ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765           63 --RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        63 --~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (233)
                        ..-+-++++++++.+ +++++.||.|-.|++-++........+. +..++.++.|+|+++.||+.+-||.+.+||+..
T Consensus        91 iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             eeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence              112346778888875 4678888999999998887665444443 456778899999999999999999999999976


Q ss_pred             Ceeeeeeec---------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee--ecCceeEEEECCCCCEEEE
Q 026765          140 FKPIHRRKF---------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       140 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~las  208 (233)
                      ....+...-         ...+..++|+|++..+++...++.|++|+...++....+..  +...+.+++|+|+|+|||+
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            554332221         23467789999999999999999999999999988888764  3444788999999999999


Q ss_pred             eeCCCcEEEEecCC
Q 026765          209 GSADSLVSLWDISE  222 (233)
Q Consensus       209 ~s~dg~v~iwd~~~  222 (233)
                      ++.||.|.|||.++
T Consensus       250 s~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  250 STLDGQILVWNVDT  263 (933)
T ss_pred             eccCCcEEEEeccc
Confidence            99999999999995

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.9e-20  Score=132.48  Aligned_cols=202  Identities=21%  Similarity=0.369  Sum_probs=160.0

Q ss_pred             eeeeCccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEE-EEcCCCCCEEEEEeCC
Q 026765           14 REYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-CWDPKHADLIATASGD   88 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~l~sg~~d   88 (233)
                      -+|.-|.+.|..++|-.+    +..|+|++. |..+||-.+.+.....  .-+.||++.|.++ .|+   +-++++|++|
T Consensus       130 le~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g~~~--~a~sghtghilalyswn---~~m~~sgsqd  203 (350)
T KOG0641|consen  130 LEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRGQGF--HALSGHTGHILALYSWN---GAMFASGSQD  203 (350)
T ss_pred             eeeeecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCCCcc--eeecCCcccEEEEEEec---CcEEEccCCC
Confidence            468889999999999532    457888774 4445554444332222  2478999999877 454   4689999999


Q ss_pred             CeEEEEECCCCeeeeeeee--------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECC
Q 026765           89 KTVRLWDARSGKCSQQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNM  159 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~  159 (233)
                      ++|++||++-..++.....        +..+..++..|.|+.+++|..|....+||++..+.++.+ ++..++.++.|+|
T Consensus       204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp  283 (350)
T KOG0641|consen  204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP  283 (350)
T ss_pred             ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence            9999999998877665432        123456899999999999999999999999999988774 4567899999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCC----ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          160 TGEMFFLTTGNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .-.++++++-|..|++-|+.-    .-++.....|...+..+.|+|+.--+++.|.|.++.+|-++
T Consensus       284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            999999999999999998752    12344455688899999999999889999999999999764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3.8e-20  Score=144.25  Aligned_cols=193  Identities=15%  Similarity=0.165  Sum_probs=144.9

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCe
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN  111 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~  111 (233)
                      ++.++|++.|+.|++||+....  ..  ..+..+. .+..++|+|++..++++++.++.|++||..+++....+......
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~--~~--~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE--VT--RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc--eE--EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence            3578899999999999986422  22  2344443 36679999987656677888999999999988766555444445


Q ss_pred             eEEEECCCCCeEEEE-cCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC-eEEEEecCCceeeeEEee
Q 026765          112 INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       112 ~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~  189 (233)
                      ..+.++|+++.++++ ..++.+.+||+++.+.+.....+..+..+.|+|+++.++++..++ .+.+|+..+.+....+. 
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-  154 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-  154 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence            678899999987655 567899999998877666555555678899999999999888764 56677887766654433 


Q ss_pred             ecCceeEEEECCCCCEEEE-eeCCCcEEEEecCCcEEEEeee
Q 026765          190 HTAGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       190 ~~~~v~~i~~~p~~~~las-~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ....+.+++|+|++++|+. +..++.|++||++++++++++.
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~  196 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT  196 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence            3345678999999998854 4569999999999998877653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=2.4e-21  Score=156.47  Aligned_cols=197  Identities=23%  Similarity=0.300  Sum_probs=153.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      +..++.||...|.|+.-..++. |+|||+|.++|||....      ....+.+|...|-+++.-|.+  .++||+.|++|
T Consensus        93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtI  163 (745)
T KOG0301|consen   93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTI  163 (745)
T ss_pred             chhhhhccccceeeeecCCcCc-eEecccccceEEecchh------hhcccCCcchheeeeeecCCC--cEEeccCccee
Confidence            3356789999999999888888 99999999999997642      223588999999999999875  56799999999


Q ss_pred             EEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765           92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ++|.-  +++.+++..+. -+..+++.+++ .+++++.||.|+.|++.........-+..-+.+++...++..+++.++|
T Consensus       164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED  240 (745)
T KOG0301|consen  164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGED  240 (745)
T ss_pred             eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence            99986  45556555443 34567777664 6789999999999999543333333344568888878889999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +++++|+..  ++...+.-....|+++.+-++|. +++|+.||.||||-....
T Consensus       241 rtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  241 RTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             ceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence            999999976  55555554455899999888776 577889999999987643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.8e-21  Score=140.25  Aligned_cols=207  Identities=20%  Similarity=0.379  Sum_probs=151.7

Q ss_pred             eeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEeccc-----CCCCceeeEEEecCcCcEEEEEEcCCCC-CEEEEE
Q 026765           14 REYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEP-----HGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATA   85 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg   85 (233)
                      ..++.|.+.|..|.|-+  .|+.+|++|.|++++||+-..     ++...+....+......|+++.|.|..- -.++++
T Consensus        53 s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~  132 (361)
T KOG2445|consen   53 SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA  132 (361)
T ss_pred             eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence            35678999999999964  489999999999999997522     1123345556777788999999998643 357899


Q ss_pred             eCCCeEEEEECCCCeee------eeee--------ecCCeeEEEECCC---CCeEEEEcCC-----CcEEEEEcCCC---
Q 026765           86 SGDKTVRLWDARSGKCS------QQAE--------LSGENINITYKPD---GTHIAVGNRD-----DELTILDVRKF---  140 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~------~~~~--------~~~~~~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~---  140 (233)
                      +.||++|||+.....-.      .++.        ....-.|+.|+|.   ..+|++|+.+     +.+.||.....   
T Consensus       133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK  212 (361)
T KOG2445|consen  133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK  212 (361)
T ss_pred             ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence            99999999987544221      1111        1223457888864   3467777765     46788864322   


Q ss_pred             -eeeeee-ecCceeeEEEECCC----CCEEEEEeCCCeEEEEecCCc--------------------eeeeEEeeecCce
Q 026765          141 -KPIHRR-KFGYEVNEIAWNMT----GEMFFLTTGNGTVEVLTYPSL--------------------RPLDTVVAHTAGC  194 (233)
Q Consensus       141 -~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~v  194 (233)
                       ..+..+ .+..+|..++|.|+    ...+++++.|| |+||.....                    +.+..+..|...|
T Consensus       213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V  291 (361)
T KOG2445|consen  213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV  291 (361)
T ss_pred             eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence             222221 24568999999986    35688999999 999987621                    2345567799999


Q ss_pred             eEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          195 YCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       195 ~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +.+.|+-.|..|++.+.||+||+|..+
T Consensus       292 Wrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  292 WRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEEEeeeeeEEeecCCCceeeehhhh
Confidence            999999999999999999999999865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=2.1e-21  Score=155.59  Aligned_cols=209  Identities=20%  Similarity=0.349  Sum_probs=153.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +.+..|.++|..++|-|-..+|++++.|.++|+||++.......  ..+.||...|.+++|+|.++..+++|+.||.|.|
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~--~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG--RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--eeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            45668999999999999667899999999999999975332211  1467999999999999999999999999999999


Q ss_pred             EECCCCeee------------eee----------------eecCCe---eEEEECCCCCeEEEEcC-CCcEEEEEcCCCe
Q 026765           94 WDARSGKCS------------QQA----------------ELSGEN---INITYKPDGTHIAVGNR-DDELTILDVRKFK  141 (233)
Q Consensus        94 wd~~~~~~~------------~~~----------------~~~~~~---~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~  141 (233)
                      ||++-....            +.-                .....+   +.+.+..|...|++++. |+.|++||+++..
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            999743200            000                000011   22555678888888777 9999999998754


Q ss_pred             eeeeee------c------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeE--EEECCCCCE
Q 026765          142 PIHRRK------F------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYC--IAIDPMGRY  205 (233)
Q Consensus       142 ~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~--i~~~p~~~~  205 (233)
                      ......      .      ...+.++.....|.++.+.+.|+.|+.|+....  .+...+.++...-.-  -..+|++.+
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            322111      1      234667777888999999999999999998643  233344444332222  246899999


Q ss_pred             EEEeeCCCcEEEEecCCcE
Q 026765          206 FAVGSADSLVSLWDISEML  224 (233)
Q Consensus       206 las~s~dg~v~iwd~~~~~  224 (233)
                      +++|+.|..++||.+...+
T Consensus       332 l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             EeccCCCcceeeeeecCcc
Confidence            9999999999999988653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.6e-21  Score=149.80  Aligned_cols=192  Identities=18%  Similarity=0.253  Sum_probs=155.3

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc----C-CCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeC
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP----H-GHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASG   87 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~----~-~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~   87 (233)
                      ..+.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+..    . .........+..|+-+|+++...+.+ ...++|+|.
T Consensus       117 ~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~  196 (476)
T KOG0646|consen  117 NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE  196 (476)
T ss_pred             HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC
Confidence            45689999999999999999999999999999998732    1 11122334678999999999886542 246789999


Q ss_pred             CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee----------------eeee-ec--
Q 026765           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP----------------IHRR-KF--  148 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------~~~~-~~--  148 (233)
                      |.++++||+..+.....+.++....+++.+|.++.+.+|+++|+|.+.++.+...                +... -+  
T Consensus       197 D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~  276 (476)
T KOG0646|consen  197 DRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN  276 (476)
T ss_pred             CceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence            9999999999999888888888889999999999999999999999887643221                0000 01  


Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCE
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY  205 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  205 (233)
                      +.+|++++.+.||..+++|+.||.+.+||..+.+.++++....++|+-+.+.|--+-
T Consensus       277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~  333 (476)
T KOG0646|consen  277 ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERG  333 (476)
T ss_pred             CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccc
Confidence            137999999999999999999999999999988888887766778888888665443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6.3e-22  Score=156.44  Aligned_cols=218  Identities=24%  Similarity=0.345  Sum_probs=158.1

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC------CceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      ++-+|.+|.++|.|++..+.++++.||+.||+|+.|++.+...      .....-.+.||.++|..+++++.. ..|+++
T Consensus       336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llsc  414 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSC  414 (577)
T ss_pred             eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeee
Confidence            3458999999999999999999999999999999997642110      112223577999999999999875 457799


Q ss_pred             eCCCeEEEEECCCCeeeeeee---ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeee--------cCceee
Q 026765           86 SGDKTVRLWDARSGKCSQQAE---LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVN  153 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~  153 (233)
                      +.||+++.|+...... ..+.   -.+-...+.+-... ...++...-+.-.++++..........        ....++
T Consensus       415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            9999999999766543 1111   11223334432221 112222222222223332221111111        113578


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+.++|...+.+.+..|+.++++|..+++++.....|...+.++++.|+|.+|++++.|+.+++|++....|++++..
T Consensus       494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence            889999999999999999999999999999999999999999999999999999999999999999998888887653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=6e-21  Score=147.62  Aligned_cols=208  Identities=17%  Similarity=0.254  Sum_probs=158.5

Q ss_pred             eeeeCccccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .++.-|.++|++++|+|..  +.+|+|+.-|.|=+||+..+....-..+.+..|..+|.++.|+|.+...+++.+.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            4566789999999999965  57888999999999999532222223445778999999999999998899999999999


Q ss_pred             EEEECCCCeeeeeeeec--CC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee-ee-eecCceeeEEEECCCCCE-EE
Q 026765           92 RLWDARSGKCSQQAELS--GE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HR-RKFGYEVNEIAWNMTGEM-FF  165 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-~~  165 (233)
                      ++-|+............  .. ...+.|+.+...++.+..=|.+.+||+++.... .. ..+...|+.++++|...+ ++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence            99999876432222221  11 123566666666666666669999999876542 21 224457999999998765 66


Q ss_pred             EEeCCCeEEEEecCCce----eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          166 LTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +++-|++.+|||++...    ++.....|...|.+..|||.+-.|+|.+.|..|+|||..
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            77889999999997543    334445699999999999999889999999999999983

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=3.9e-20  Score=136.77  Aligned_cols=195  Identities=17%  Similarity=0.226  Sum_probs=156.2

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ...|..+.|+|.++.|+.+++||++++|++....    ...++ .|..++.+++|.+.  ..+++|+-||.|+.+|+.++
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~-~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKF-KHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhhe-ecCCceeeeeccCC--ceEEEeccCceEEEEEecCC
Confidence            6779999999999999999999999999987531    11223 48899999999874  45789999999999999998


Q ss_pred             eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  179 (233)
                      .......+...+.++.+.+-...+++|++|++|++||.+..........+..|.++..  .++.+++|+.+..+.+||++
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence            7666666667788999998888999999999999999997555444444556777664  68899999999999999998


Q ss_pred             CceeeeEE--eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          180 SLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       180 ~~~~~~~~--~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +.....+.  ..-.-.+.||++-|++.-++.+|-||.|.+=.+++.
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s  209 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS  209 (323)
T ss_pred             cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence            76543321  112235789999999999999999999988777655

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=3.7e-21  Score=156.28  Aligned_cols=203  Identities=15%  Similarity=0.205  Sum_probs=165.7

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC--CCCEEEEEeCCCeEEEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTVRLWD   95 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~sg~~d~~i~iwd   95 (233)
                      +-...+++++.+|+|++||+|..-|.+|||++..-.  .  .....+|...|.++.|+-.  ..++|++|+.|..|+|||
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE--Y--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhh--h--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            456789999999999999999999999999986422  1  1235689999999999642  346899999999999999


Q ss_pred             CCCCe-eeee------------e-----------------------e---------------ecCCeeEEEECCCCCeEE
Q 026765           96 ARSGK-CSQQ------------A-----------------------E---------------LSGENINITYKPDGTHIA  124 (233)
Q Consensus        96 ~~~~~-~~~~------------~-----------------------~---------------~~~~~~~~~~~~~~~~l~  124 (233)
                      +...- ..++            +                       .               .+...+.++..|..++++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            85220 0000            0                       0               001124578889999999


Q ss_pred             EEcCCCcEEEEEcCCCeeeeeeecC----ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765          125 VGNRDDELTILDVRKFKPIHRRKFG----YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID  200 (233)
Q Consensus       125 ~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~  200 (233)
                      +++.|..|+|||+.+++.....+..    ...-.+...|.|.|+++.+.|.++.++|+-+++++.+..+|.+.|+.+.|.
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            9999999999999998887766632    345567889999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcE
Q 026765          201 PMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       201 p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +|-++|++.+.||.|.||.+....
T Consensus       693 nDCkHlISvsgDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLPLTM  716 (1080)
T ss_pred             ccchhheeecCCceEEEEECchhH
Confidence            999999999999999999987543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=1.1e-20  Score=152.64  Aligned_cols=212  Identities=15%  Similarity=0.252  Sum_probs=161.4

Q ss_pred             CCCCCCCCcccee------eeCccccEEE-EEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE
Q 026765            3 ESSIPFKNLHSRE------YTGHKKKVHS-VAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW   74 (233)
Q Consensus         3 ~~~~~~~~~~~~~------~~~H~~~V~~-~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~   74 (233)
                      +++++++..+.+.      +.+|.+-|.. ++|-+ ++..+++|+.|.++.+|.+....    ....++||...|.+++.
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~----P~~~LkgH~snVC~ls~  109 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE----PLYTLKGHKSNVCSLSI  109 (745)
T ss_pred             CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC----chhhhhccccceeeeec
Confidence            4455555554433      4567888877 88876 45569999999999999876432    23468899999999997


Q ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCcee
Q 026765           75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEV  152 (233)
Q Consensus        75 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~  152 (233)
                      ..++ . ++|||+|.++++|-..  ++...+..+ ..++++..-|++ .+++|+.|+.|++|.-.+  .+.... +..-+
T Consensus       110 ~~~~-~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l~tf~gHtD~V  182 (745)
T KOG0301|consen  110 GEDG-T-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--LLKTFSGHTDCV  182 (745)
T ss_pred             CCcC-c-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--hhhhhccchhhe
Confidence            7654 3 7899999999999753  344444433 456678888877 788999999999998532  222222 33456


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      ..+++=+ +..+++.+.||.|+.|+. +++.+..+.+|..-|++++..+++..++++++|++++||+..  +|++++
T Consensus       183 RgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I  255 (745)
T KOG0301|consen  183 RGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI  255 (745)
T ss_pred             eeeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence            7777643 446788899999999998 789999999999999999988889999999999999999987  566654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=3.5e-19  Score=139.62  Aligned_cols=194  Identities=18%  Similarity=0.256  Sum_probs=151.8

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      +..|.|++|.++|+. +||.++|.+.||+...   .++..... .|...|.+++...++  .|+||+.|..|..||-...
T Consensus       246 kk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~---~~~~k~~~-aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~  318 (626)
T KOG2106|consen  246 KKFVLCVTFLENGDV-ITGDSGGNILIWSKGT---NRISKQVH-AHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYR  318 (626)
T ss_pred             ceEEEEEEEcCCCCE-EeecCCceEEEEeCCC---ceEEeEee-ecCCceEEEEEecCc--cEeecCccceEEecccccc
Confidence            477999999987764 5999999999999742   23333334 899999999998764  3568999999999984322


Q ss_pred             ee-----------eeeee------------------------------ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765          100 KC-----------SQQAE------------------------------LSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus       100 ~~-----------~~~~~------------------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      +.           ++...                              ...+...++.+|+.+.+++++.|+.+++|+  
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--  396 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--  396 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence            10           00000                              011223567889999999999999999999  


Q ss_pred             CCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                      ..++........+..++.|+|.| .+++|...|...++|.++... .++....+++.+++|+|+|.+||.|+.|+.|+||
T Consensus       397 ~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  397 DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            56677777778899999999999 999999999999999987433 3444447899999999999999999999999999


Q ss_pred             ecCCcE
Q 026765          219 DISEML  224 (233)
Q Consensus       219 d~~~~~  224 (233)
                      .+....
T Consensus       475 ~Vs~~g  480 (626)
T KOG2106|consen  475 RVSANG  480 (626)
T ss_pred             EECCCC
Confidence            997543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.9e-21  Score=164.52  Aligned_cols=210  Identities=17%  Similarity=0.261  Sum_probs=165.1

Q ss_pred             ceeeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..++..|++.|..+.|++.+. +||||+.||.|.|||++.-...-..  --..-.+.|.+++|+..-+++|+|++.+|.+
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--GSQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC--CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            356788999999999999765 9999999999999999742211110  0112356899999999888999999999999


Q ss_pred             EEEECCCCeeeeeeeecCC---eeEEEECCCCC-eEEEEcCCC---cEEEEEcCCCe-eeeee-ecCceeeEEEECCCC-
Q 026765           92 RLWDARSGKCSQQAELSGE---NINITYKPDGT-HIAVGNRDD---ELTILDVRKFK-PIHRR-KFGYEVNEIAWNMTG-  161 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~~d~---~i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~~-  161 (233)
                      .|||++..+.+..+.....   .-.++|+|+.. .+++++.|.   .|.+||+|... ++..+ .+...+.++.|++.+ 
T Consensus       187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~  266 (1049)
T KOG0307|consen  187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP  266 (1049)
T ss_pred             eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc
Confidence            9999998865554443333   23589999864 466666553   58999998533 33333 345679999999887 


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcE
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~  224 (233)
                      .++++.+.|+.+.+|+..+++.+..+......++.+.|.|... .+++++-||.|-||.+..+.
T Consensus       267 ~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  267 RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            6777888999999999999999999988889999999999886 78999999999999987543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.1e-19  Score=144.98  Aligned_cols=212  Identities=20%  Similarity=0.307  Sum_probs=158.7

Q ss_pred             CCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus         6 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      -||++.....|.||++.|.+|...|.|.+|+||+.||+||||.+.++.  ++...++   .+.|.+++|+|.....++..
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~---d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQF---DSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEee---cceeEEEEecCCCCceeEEE
Confidence            479999889999999999999999999999999999999999997643  2333333   35899999999876655455


Q ss_pred             eCCCeEEEEECCCCe---------e-----------------------------eeeeeecCCeeEEEECCCCCeEEEEc
Q 026765           86 SGDKTVRLWDARSGK---------C-----------------------------SQQAELSGENINITYKPDGTHIAVGN  127 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~---------~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~  127 (233)
                      +....+.|-+-.-|.         .                             ...+.....+..+.|+..|.||++..
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            444445554422110         0                             00011122334578999999999877


Q ss_pred             CC---CcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCC
Q 026765          128 RD---DELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG  203 (233)
Q Consensus       128 ~d---~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  203 (233)
                      .+   ..+.|.++.......- .+....+..+.|+|...++++++.. .+++||+...+.++.+......|.+++.+|.|
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            64   4577888765433322 2334568899999999999888765 79999998888888877778889999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCc
Q 026765          204 RYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       204 ~~las~s~dg~v~iwd~~~~  223 (233)
                      ..|+.|+.|+.+..||+.-.
T Consensus       620 Dnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             CeEEEecCCCeeEEEEcccC
Confidence            99999999999999999744

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=4e-20  Score=136.29  Aligned_cols=170  Identities=21%  Similarity=0.315  Sum_probs=137.9

Q ss_pred             ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe------------eeeeeee-cC---CeeEEEECC-CCCeEEE
Q 026765           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK------------CSQQAEL-SG---ENINITYKP-DGTHIAV  125 (233)
Q Consensus        63 ~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~------------~~~~~~~-~~---~~~~~~~~~-~~~~l~~  125 (233)
                      +.|.+.|+++.+.+..+++++||+.||.|.+||++...            |+..... .+   .+..+.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999999888999999999999999997542            1100000 11   123456666 4446778


Q ss_pred             EcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCC---CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC
Q 026765          126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM  202 (233)
Q Consensus       126 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  202 (233)
                      ++.|.++++||..+.+.....+++..+.+-+++|-   .-++++|..+-.|++.|+.++..-..+.+|...|.++.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            88999999999999888888888888888888875   346788889999999999999999999999999999999999


Q ss_pred             CCE-EEEeeCCCcEEEEecCCc-EEEEeeecC
Q 026765          203 GRY-FAVGSADSLVSLWDISEM-LCVRTFTKL  232 (233)
Q Consensus       203 ~~~-las~s~dg~v~iwd~~~~-~~i~~~~~~  232 (233)
                      ..+ ||+|+.||.|++||++.. -|.+++..+
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence            886 789999999999999866 677777655

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=1.3e-19  Score=149.17  Aligned_cols=198  Identities=17%  Similarity=0.316  Sum_probs=168.3

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      ...+++|+.++=|++.+.|++.|+|-++++..    .+..-.+   +.|..+|+.++.+..+ ++++|++.+|.+++||.
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS----Gi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQS----GIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDF  522 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEccc----CeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEec
Confidence            37899999999999999999999999999864    2233334   5799999999997654 57789999999999999


Q ss_pred             CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765           97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      .+......+........+.++.....++.+..|-.|.++|+.+.+.+.... ++..++.++|+|+|+.+++++.|++|++
T Consensus       523 ~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  523 KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            988877777777777778888777888999999999999998877766554 6778999999999999999999999999


Q ss_pred             EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-CcEEEEecCCc
Q 026765          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEM  223 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~v~iwd~~~~  223 (233)
                      ||+.++..+..+. -..++.+++|+|+|.+|||...| .-|++|-=.+.
T Consensus       603 wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl  650 (910)
T KOG1539|consen  603 WDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL  650 (910)
T ss_pred             EeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence            9999998887765 35677899999999999999998 66999965443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1e-18  Score=141.07  Aligned_cols=213  Identities=17%  Similarity=0.277  Sum_probs=167.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +.+.=-..+|.++||+.+.+.||.+-.||.|-+|++..   ...+...+.++. ..|-.++|.+. + .|+|.+.+|.|.
T Consensus        19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~-~-RLFS~g~sg~i~   93 (691)
T KOG2048|consen   19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEG-G-RLFSSGLSGSIT   93 (691)
T ss_pred             EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccC-C-eEEeecCCceEE
Confidence            44444578899999999999999999999999999874   455666677765 57999999953 3 467999999999


Q ss_pred             EEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEEe
Q 026765           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  168 (233)
                      -||+.+.+....... .+.+++++.+|.+..+++|+.||.+..++...........+   ...+.+++|++++..++.|+
T Consensus        94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence            999999887665554 45678899999999999999999877788776665554433   35689999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEEe----e----ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          169 GNGTVEVLTYPSLRPLDTVV----A----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~----~----~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .||.|++||...+....-..    +    ..--|+++.+=. ...||+|..-|+|++||...+..++.+.-|
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhh
Confidence            99999999998765544111    1    112366777654 457899999999999999999887776543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.85  E-value=5e-20  Score=148.93  Aligned_cols=214  Identities=20%  Similarity=0.288  Sum_probs=162.5

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ...+||.+.|+.++|+|.|++|+|+|.|.|-|++-.-..........+..-|.....|++|-+. ...++||...+.+|+
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRv  433 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRV  433 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-Cceeeecccceeeee
Confidence            4568999999999999999999999999999998653212222222334457778999999874 456789999999999


Q ss_pred             EECCCC--------------------------------eeee------------eee-----------------------
Q 026765           94 WDARSG--------------------------------KCSQ------------QAE-----------------------  106 (233)
Q Consensus        94 wd~~~~--------------------------------~~~~------------~~~-----------------------  106 (233)
                      |+....                                +...            ..+                       
T Consensus       434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t  513 (764)
T KOG1063|consen  434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT  513 (764)
T ss_pred             ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence            976310                                0000            000                       


Q ss_pred             ----------ecCCeeEEEECCCCCeEEEEcCCC-----cEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765          107 ----------LSGENINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       107 ----------~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                                +.-++++++.+|+++.+++++...     .|.+|+..+......++ +...|+.++|+|+|+++++.+.|
T Consensus       514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence                      001245788999999999988653     48899988877766443 56789999999999999999999


Q ss_pred             CeEEEEecCCc-e---eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc--EEEEe
Q 026765          171 GTVEVLTYPSL-R---PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRT  228 (233)
Q Consensus       171 ~~v~~~~~~~~-~---~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~--~~i~~  228 (233)
                      .++.+|..... .   .+.....|..-|++++|+|++.++||+|.|.+|+||.....  .++..
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~  657 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR  657 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence            99999976321 1   23336679999999999999999999999999999999877  55544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=4.7e-20  Score=147.91  Aligned_cols=222  Identities=18%  Similarity=0.257  Sum_probs=153.4

Q ss_pred             CCCCCCCCCccc------eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCc------------------
Q 026765            2 GESSIPFKNLHS------REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK------------------   56 (233)
Q Consensus         2 ~~~~~~~~~~~~------~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~------------------   56 (233)
                      |++++.++.+..      +.+.||.+.|.+++|.|.+ ..|++|+.||.|.|||........                  
T Consensus       120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            456666666543      3477999999999999976 578999999999999975422000                  


Q ss_pred             --ee---eEEEecCcCcE----EEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeee------e------cCCeeEE
Q 026765           57 --VK---DIELRGHADSV----DQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAE------L------SGENINI  114 (233)
Q Consensus        57 --~~---~~~~~~h~~~v----~~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~------~------~~~~~~~  114 (233)
                        ..   ....+.+...|    +.+.| .+ ...|++++. |+.|+|||++...+.....      .      .....++
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence              00   00122344444    44444 44 356778777 9999999998765432211      1      1123467


Q ss_pred             EECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc-e----eeEEEECCCCCEEEEEeCCCeEEEEecCCce-eeeEEe
Q 026765          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-E----VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVV  188 (233)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~  188 (233)
                      ..+..|.++.+.+.|+.|.+|+++.........+.. .    -..-..++++.++++++.+...++|.....+ +...+.
T Consensus       278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~  357 (720)
T KOG0321|consen  278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL  357 (720)
T ss_pred             EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhh
Confidence            777788998888889999999998654322211111 1    1122457899999999999999999987543 455577


Q ss_pred             eecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEE
Q 026765          189 AHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       189 ~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~  225 (233)
                      +|...|++++|.|.. .-+|++++|..++||++..+.+
T Consensus       358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             CcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence            999999999998865 3477789999999999976643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=3.7e-19  Score=143.96  Aligned_cols=207  Identities=18%  Similarity=0.318  Sum_probs=152.7

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC------CceeeEEE------------------------
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH------GKVKDIEL------------------------   62 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~------------------------   62 (233)
                      .+++.+|++.|+|++|+.+|+++|||++|+.|.+|...-.+.      ..++++.+                        
T Consensus        46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~  125 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS  125 (1081)
T ss_pred             ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence            357899999999999999999999999999999998542211      01111111                        


Q ss_pred             -ecC--cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee---ecCCeeEEEECCCC-----CeEEEEcCCCc
Q 026765           63 -RGH--ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKPDG-----THIAVGNRDDE  131 (233)
Q Consensus        63 -~~h--~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~l~~~~~d~~  131 (233)
                       ..|  ...+.+++|..+| .+++-|-.||+|.+-+-..........   ...++++++|+|..     ..+++.....+
T Consensus       126 V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  126 VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence             011  1234555666554 567788888888887654333222222   22456789998863     46788888888


Q ss_pred             EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       132 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      +.++.+.....-.....+++..++.+-++|+++++|+.++.+++|.- .+-.+.++...+..|++++..|++++++.|..
T Consensus       205 LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  205 LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence            88888765433335556778889999999999999999999999974 45566666667889999999999999999999


Q ss_pred             CCcEEEEecC
Q 026765          212 DSLVSLWDIS  221 (233)
Q Consensus       212 dg~v~iwd~~  221 (233)
                      ||+|.-||+.
T Consensus       284 DGTiACyNl~  293 (1081)
T KOG1538|consen  284 DGTIACYNLI  293 (1081)
T ss_pred             cCeeehhhhH
Confidence            9999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=1.5e-18  Score=136.11  Aligned_cols=199  Identities=19%  Similarity=0.300  Sum_probs=159.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC---------Cce---------------------------eeEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------GKV---------------------------KDIE   61 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~---------~~~---------------------------~~~~   61 (233)
                      .|.+.|.+++.-.+|.+|- |+.|+.|..||-+-...         +.+                           ....
T Consensus       285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            8999999999988888775 99999999998321100         000                           0113


Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (233)
                      ..+|.+..-.++.+|.. ..+++++.|+.+++|+  ..+.........+..++.|+|.| .+++|...|...++|.++..
T Consensus       364 v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEecccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            45788888889999975 5678999999999999  44555555667778899999999 99999999999999999866


Q ss_pred             eeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      .+.....+.+++.+.++|+|.++++++.|+.+++|.... ++...... .+.++|+.+.|++|+++|.+-|-|-.|-.|.
T Consensus       440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            665545577899999999999999999999999998753 44444333 3457899999999999999999999999995


Q ss_pred             cC
Q 026765          220 IS  221 (233)
Q Consensus       220 ~~  221 (233)
                      ..
T Consensus       520 ~~  521 (626)
T KOG2106|consen  520 PS  521 (626)
T ss_pred             cc
Confidence            43

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=1.4e-19  Score=133.07  Aligned_cols=204  Identities=20%  Similarity=0.326  Sum_probs=153.6

Q ss_pred             CccccEEEEEECcCCC-----EEEEEeCCCCEEEEecccCCCCceeeEEE-----ecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           18 GHKKKVHSVAWNCTGT-----KLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~-----~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      .|.-+++.+.|.|+.+     +|||.+  ..+|+|.+............+     ..+..++++..|+..++++|.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5899999999999873     566654  689999987532211111111     2345689999999989999999999


Q ss_pred             CCeEEEEECCCCe----eeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeee---eeeec-CceeeEEEEC
Q 026765           88 DKTVRLWDARSGK----CSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPI---HRRKF-GYEVNEIAWN  158 (233)
Q Consensus        88 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~---~~~~~-~~~~~~~~~~  158 (233)
                      |-+..|||+.++.    ..+...+..++..++|...+ ..+++.+.||.+++||+|..+.-   ..-.. ..+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999873    23444567889999998865 46789999999999999875422   22112 3456778898


Q ss_pred             CCCCEE-EEE-eCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCc
Q 026765          159 MTGEMF-FLT-TGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       159 ~~~~~~-~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~  223 (233)
                      +....+ ++- -....|.+.|.+. ..++..+.+|.+.|+.|+|.|.. .+|++|+.|..+-|||+.+.
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            766544 333 3456788889875 45778899999999999999965 58999999999999999865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=148.03  Aligned_cols=162  Identities=14%  Similarity=0.239  Sum_probs=138.6

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee----eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP  142 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  142 (233)
                      ..+++++.++- +++.+.|...|.|-+||+++|-....+    ...+++..++.+.-++.+++++.+|-+.+||..+...
T Consensus       449 ~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  449 INATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             cceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            34566666654 467777888888888888887655544    3456677788877778899999999999999988888


Q ss_pred             eeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ......+..+..+..+.....++++..+-.|.++|..+.+..+.|.+|+..|++++|||+|++|++++.|++|++||+.+
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            88888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEee
Q 026765          223 MLCVRTF  229 (233)
Q Consensus       223 ~~~i~~~  229 (233)
                      +.+|--|
T Consensus       608 ~~lID~~  614 (910)
T KOG1539|consen  608 GTLIDGL  614 (910)
T ss_pred             cceeeeE
Confidence            9876543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=9.7e-19  Score=145.43  Aligned_cols=192  Identities=20%  Similarity=0.353  Sum_probs=150.9

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      +...+-++++++|+.+|+++|.||.|-.||+-+.....    ....+++|..+|.++.|+|.+ ++||+.+.||.|++||
T Consensus        92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----QEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWD  166 (933)
T ss_pred             eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----hheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEE
Confidence            34567899999999999999999999999998876533    334688999999999999985 7999999999999999


Q ss_pred             CCCCeeeeeeee---------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCE
Q 026765           96 ARSGKCSQQAEL---------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEM  163 (233)
Q Consensus        96 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~  163 (233)
                      +.++.+...+..         ......++|+|++..+++...|+.|.+|+...+.....+..   ......+.|+|.|+|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence            998876544321         11223489999998999999999999999888776655442   234788999999999


Q ss_pred             EEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      +++++-+|.|.+||.++.+.    ......|.+++|-|+.+-+-.-...|..-
T Consensus       247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~  295 (933)
T KOG1274|consen  247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLG  295 (933)
T ss_pred             EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccc
Confidence            99999999999999876222    12235688999999887655444444433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=8.5e-19  Score=130.38  Aligned_cols=213  Identities=16%  Similarity=0.289  Sum_probs=157.6

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.+.+|..+|++++||++|..|+|+|.|..|++||+....  ...++.+   ..+|..+.|+|...+.++..--+..-.
T Consensus        58 ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp~  132 (405)
T KOG1273|consen   58 ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESPV  132 (405)
T ss_pred             hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEEc---cCccceeeeccccCCeEEEEEecCCcE
Confidence            46789999999999999999999999999999999997543  3444444   478999999998887776666666555


Q ss_pred             EEECCCCeeeeeeeec---CCee---EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEECCCCCEE
Q 026765           93 LWDARSGKCSQQAELS---GENI---NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMF  164 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  164 (233)
                      +-++..+.- ..+...   ....   ...|.+.|+++++|...|.+.++|..+.+.+...+..  ..+..+.++..|+++
T Consensus       133 vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l  211 (405)
T KOG1273|consen  133 VIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL  211 (405)
T ss_pred             EEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence            555544221 111111   1111   2458999999999999999999999988877665532  467888999999999


Q ss_pred             EEEeCCCeEEEEecCCc---------eeeeEEeee--cCceeEEEECCCCCEEEEeeC-CCcEEEEecCCcEEEEeeec
Q 026765          165 FLTTGNGTVEVLTYPSL---------RPLDTVVAH--TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~---------~~~~~~~~~--~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +..+.|..|+.|+.+..         ++..++..-  ...=.++.|+.+|.|+.+|+. ...++||.-..|..|+.+.+
T Consensus       212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            99999999999987521         111111110  111247889999999987774 46799999999999988764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.4e-19  Score=137.55  Aligned_cols=193  Identities=24%  Similarity=0.349  Sum_probs=145.6

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      .+++|+++|..|++|+.||++|||+...-    ....+...|...|.++.|+|++ ++|++-+.| ..+||+.+++-+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhh
Confidence            68999999999999999999999995321    1233456788999999999985 688899999 99999999986555


Q ss_pred             eeeecCCe---eEEEECCCC---C-eE-EEEcCCCcEEEEEcCCCeee---ee---eecCceeeEEEECCCCCEEEEEeC
Q 026765          104 QAELSGEN---INITYKPDG---T-HI-AVGNRDDELTILDVRKFKPI---HR---RKFGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus       104 ~~~~~~~~---~~~~~~~~~---~-~l-~~~~~d~~i~i~d~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      ........   ..+.|..++   . ++ +.-...+.+..+|+.....-   ..   ..-...+.+++.+.+|+++++|+.
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence            44422222   236676665   2 22 23334466777776433221   10   111236899999999999999999


Q ss_pred             CCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          170 NGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +|.|.+++..+.+...-+ ..|..-|+.+.|+|+.+++++-+.|..+.|..+..
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999877665543 46999999999999999999999999999988765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=1.3e-18  Score=134.74  Aligned_cols=208  Identities=17%  Similarity=0.225  Sum_probs=150.7

Q ss_pred             eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC--------ce-----------------------e---
Q 026765           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG--------KV-----------------------K---   58 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~--------~~-----------------------~---   58 (233)
                      ..|..|.++|.++.|+|.+ .++.+.|+||++|+=|++..-..        ..                       .   
T Consensus       228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD  307 (498)
T KOG4328|consen  228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID  307 (498)
T ss_pred             EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence            3467899999999999976 68999999999999886431100        00                       0   


Q ss_pred             -------eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-----eeeeeecCCeeEEEECCCCCeEEEE
Q 026765           59 -------DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-----SQQAELSGENINITYKPDGTHIAVG  126 (233)
Q Consensus        59 -------~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~  126 (233)
                             ...+.-|...|..++++|..+.+|++|+.|++++|||++.-+.     .....+...+.++.|+|++-.|++.
T Consensus       308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT  387 (498)
T KOG4328|consen  308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT  387 (498)
T ss_pred             eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee
Confidence                   0012347779999999999999999999999999999975332     2223334455678899998889999


Q ss_pred             cCCCcEEEEEc----CCCeeeeeeecCc------eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-Ccee
Q 026765          127 NRDDELTILDV----RKFKPIHRRKFGY------EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCY  195 (233)
Q Consensus       127 ~~d~~i~i~d~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~  195 (233)
                      +.|..|+|||.    ....+...+.+..      ......|.|+.++++++---..|-++|...++.+..+..-. ..|.
T Consensus       388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~  467 (498)
T KOG4328|consen  388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP  467 (498)
T ss_pred             ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence            99999999997    3334443444322      24456899999999999988899999987766555433222 2344


Q ss_pred             E-EEECCCCC-EEEEeeCCCcEEEEecC
Q 026765          196 C-IAIDPMGR-YFAVGSADSLVSLWDIS  221 (233)
Q Consensus       196 ~-i~~~p~~~-~las~s~dg~v~iwd~~  221 (233)
                      + +.|+|.+. ++|.++..|.|.||--+
T Consensus       468 ~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  468 SVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cceeecccccceeccCCccceEEEEecC
Confidence            4 57999988 44555567899998644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=3.4e-18  Score=134.00  Aligned_cols=186  Identities=21%  Similarity=0.279  Sum_probs=152.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +.+.+|+..|+++.++....+||+++..|.|.|..+.+..  +  ..++. +....|+-+.|+|....+|.+++.+|.|.
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--K--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--c--ccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence            5678999999999999999999999999999999876422  1  11232 22456778999999888999999999999


Q ss_pred             EEECCCCeeeeeee-ec-CCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765           93 LWDARSGKCSQQAE-LS-GENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        93 iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      +||+........+. .+ .+...++|+|.. ..|++.+.|.+|.+||.+.......+....+...++|.++|-++++|..
T Consensus       191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence            99997665544332 22 333458999965 5677899999999999998777777777889999999999999999999


Q ss_pred             CCeEEEEecCC-ceeeeEEeeecCceeEEEECCCC
Q 026765          170 NGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG  203 (233)
Q Consensus       170 ~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~  203 (233)
                      .|.+..||.+. ..++..+..|...|++++|-|.-
T Consensus       271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999974 46788888999999999998753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.7e-17  Score=132.98  Aligned_cols=203  Identities=15%  Similarity=0.262  Sum_probs=162.1

Q ss_pred             eeeeCc-cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H-~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .++.|+ ...|-+++|+ ++.+|+|.+.+|+|.=||+....    ..........+|-+++.+|.+ ..++.|+.||.+.
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk----~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~  135 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK----QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLY  135 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc----eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEE
Confidence            455565 5679999999 67888899999999999986422    233455667899999999986 5677889999777


Q ss_pred             EEECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----Cc----eeeEEEECCC
Q 026765           93 LWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GY----EVNEIAWNMT  160 (233)
Q Consensus        93 iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~----~~~~~~~~~~  160 (233)
                      .+++..+.......   ..+.+.++.|+|++..++.|+.||.|++||..+.+.++....     ..    -+.++.+= .
T Consensus       136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-r  214 (691)
T KOG2048|consen  136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-R  214 (691)
T ss_pred             EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-e
Confidence            78887776544322   246678999999999999999999999999988776652221     11    23444443 4


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ...+++|...|+|.+||...+..++.+..|.+.|.+++..+++.++.+++-|+.|.-|.....
T Consensus       215 d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  215 DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            568999999999999999999999999999999999999999999999999999988887655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1.8e-17  Score=135.58  Aligned_cols=209  Identities=17%  Similarity=0.180  Sum_probs=138.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      .+.+..|...+...+|+|+|++|+.++.+   ..|.+||+.....  .....+.+|   ...++|+|++..++++.+.++
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            45667888899999999999999988754   3699999864221  111123333   346799998766655556788


Q ss_pred             eEEEE--ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCe-eeeeeecCceeeEEEECCCCCEEE
Q 026765           90 TVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        90 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                      .+.||  |+.++................|+|||+.|+..+ .++...+|++.... ........ . ....|+|+|+.++
T Consensus       271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia  348 (429)
T PRK01742        271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLV  348 (429)
T ss_pred             cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEE
Confidence            76665  665555433222233445689999999877554 56778888764321 11111111 1 4567999999998


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec--CCcEEEEeeec
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTK  231 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~--~~~~~i~~~~~  231 (233)
                      ..+.++ +..||..+++... +..+ ......+|+|+|++|+.++.++.+.+|++  .++.+++++..
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            887765 5558887665432 2211 12356789999999999999999988886  35777777754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=4.6e-18  Score=127.00  Aligned_cols=200  Identities=22%  Similarity=0.340  Sum_probs=151.9

Q ss_pred             CccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           18 GHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        18 ~H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .|...-+.++|+.+    +.++|.||.-|.|||.|+....    ..-.+.+|...|+.+.++|..++++++|+.|..||+
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            47888899999765    3478999999999999987532    223578999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeee----cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe------------------eeeeee----
Q 026765           94 WDARSGKCSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFK------------------PIHRRK----  147 (233)
Q Consensus        94 wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------~~~~~~----  147 (233)
                      ||+++..|+..+..    -.++.++.|+++|.+|++++.|..+.+|++...+                  +.....    
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence            99999998876542    2467889999999999999999999999975110                  000000    


Q ss_pred             -------cC------------------------------------------------------ceeeE--EEECCCCCEE
Q 026765          148 -------FG------------------------------------------------------YEVNE--IAWNMTGEMF  164 (233)
Q Consensus       148 -------~~------------------------------------------------------~~~~~--~~~~~~~~~~  164 (233)
                             +.                                                      .++..  .++.+-.+.+
T Consensus       243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence                   00                                                      00111  1234445667


Q ss_pred             EEEeCCCeEEEEecCCceee--eEEee--ecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          165 FLTTGNGTVEVLTYPSLRPL--DTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~--~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ++|...|.+.+||++..++.  .++..  ....|...+|+-++..|+....|++|--||..
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            88999999999999876653  22222  23457889999999999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=2.4e-18  Score=134.89  Aligned_cols=201  Identities=15%  Similarity=0.288  Sum_probs=155.8

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      .||+-....-++++||..++|+|||+..    +.....+++|.+.|+++.++-.+ .+|++++..|.|.|..+.++....
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHH----HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccc
Confidence            3444445568999999999999999964    22333578999999999998665 578999999999999998887666


Q ss_pred             eeeec-CCee-EEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeee--ecCceeeEEEECCCCCEEE-EEeCCCeEEEEe
Q 026765          104 QAELS-GENI-NITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFF-LTTGNGTVEVLT  177 (233)
Q Consensus       104 ~~~~~-~~~~-~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~  177 (233)
                      .+... +..+ -+.|+|..+.++ +++.+|.+.+||+....+.+..  .+..+...++|+|....++ +.+-|..+.+||
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence            66554 3444 478999877655 6778899999999877776543  3456778899999876654 557799999999


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc-EEEEeee
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFT  230 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~-~~i~~~~  230 (233)
                      ....+....+. ...+..+++|+++|.+|++|+..|.|..||++.. .++.+..
T Consensus       238 ~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s  290 (673)
T KOG4378|consen  238 IRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS  290 (673)
T ss_pred             cccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence            98776666655 3456789999999999999999999999999844 3454443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.6e-18  Score=133.03  Aligned_cols=163  Identities=21%  Similarity=0.223  Sum_probs=133.8

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---eeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC---SQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDV  137 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (233)
                      +..|.+.|-.+.|+++| ++||||+.|.+..+|++.....   ..+... ..++.-+.|+||.+++++|+.+..+.+||.
T Consensus       220 l~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             HhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            56799999999999975 6889999999999998755432   333333 345566899999999999999999999999


Q ss_pred             CCCeeeeeeecC--ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee-ecCceeEEEECCCCCEEEEeeCCCc
Q 026765          138 RKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSL  214 (233)
Q Consensus       138 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~  214 (233)
                      .++...+.+..+  ..+.+++|.|||..+++|+.|+.+..|+++.. ......+ ....|.+++.++||+++.+-..|..
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence            998887776655  67899999999999999999999999998643 2333322 2356899999999999999999999


Q ss_pred             EEEEecCCcEEE
Q 026765          215 VSLWDISEMLCV  226 (233)
Q Consensus       215 v~iwd~~~~~~i  226 (233)
                      |++++.....++
T Consensus       378 i~l~~~e~~~dr  389 (519)
T KOG0293|consen  378 IRLYNREARVDR  389 (519)
T ss_pred             eeeechhhhhhh
Confidence            999999876654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.80  E-value=3.5e-18  Score=138.37  Aligned_cols=202  Identities=21%  Similarity=0.334  Sum_probs=150.2

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCC-----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~-----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      .+-||-..|++++-+|+++.+||++...     -|++|+...    ..+..++.+|.-.|+.++|+|++ ++|++.+.|.
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDR  594 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----WLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDR  594 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----hhhhheecccceEEEEEEECCCC-cEEEEeecCc
Confidence            4569999999999999999999998654     378998653    22333688999999999999986 5778999999


Q ss_pred             eEEEEECCCCeeee-e---eeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeee---eeecCceeeEEEECC
Q 026765           90 TVRLWDARSGKCSQ-Q---AELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIH---RRKFGYEVNEIAWNM  159 (233)
Q Consensus        90 ~i~iwd~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~---~~~~~~~~~~~~~~~  159 (233)
                      ++.+|......... .   ...+ ..+.++.|+|+++++++++.|+++.+|.....  +.+.   ..+++..++.+++.+
T Consensus       595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            99999875432111 1   1112 23457899999999999999999999987654  3222   234566788887755


Q ss_pred             C-----CCEEEEEeCCCeEEEEecCCc---------ee---eeEEeeecCceeEEEECCCC----------CEEEEeeCC
Q 026765          160 T-----GEMFFLTTGNGTVEVLTYPSL---------RP---LDTVVAHTAGCYCIAIDPMG----------RYFAVGSAD  212 (233)
Q Consensus       160 ~-----~~~~~~~~~~~~v~~~~~~~~---------~~---~~~~~~~~~~v~~i~~~p~~----------~~las~s~d  212 (233)
                      -     +..+++|-..|.+.+|..+.-         ..   .....+|...|+-+.|.|..          ..|++|+.|
T Consensus       675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D  754 (764)
T KOG1063|consen  675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDD  754 (764)
T ss_pred             cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccc
Confidence            3     336788999999999986410         00   11123467788999999762          357999999


Q ss_pred             CcEEEEecC
Q 026765          213 SLVSLWDIS  221 (233)
Q Consensus       213 g~v~iwd~~  221 (233)
                      ..++|++++
T Consensus       755 ~~vri~nv~  763 (764)
T KOG1063|consen  755 ESVRIFNVD  763 (764)
T ss_pred             ceeEEeecc
Confidence            999999976

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=1.3e-17  Score=127.54  Aligned_cols=210  Identities=23%  Similarity=0.336  Sum_probs=143.5

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc------C------CCCceeeEEEecCcCcEEEEEEcCCCCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------H------GHGKVKDIELRGHADSVDQLCWDPKHAD   80 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~------~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~   80 (233)
                      ...+.+|..+|+++.|+|+|+.||||+.+|.|.+|....      .      ...+.....+.+|...|+.++|+|++ .
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~  136 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-N  136 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-c
Confidence            356789999999999999999999999999999997651      0      11233445678999999999999985 6


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee------------
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK------------  147 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------  147 (233)
                      ++++|+-|..+++||+..|+.......+ .-+..++|.|-..++++-+.|...+.+.+...+.+....            
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  216 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER  216 (434)
T ss_pred             eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence            7889999999999999999876654433 344568888888887776666644444322111110000            


Q ss_pred             --------cC----ceeeEEEECCCCCEE---------------------------------------------------
Q 026765          148 --------FG----YEVNEIAWNMTGEMF---------------------------------------------------  164 (233)
Q Consensus       148 --------~~----~~~~~~~~~~~~~~~---------------------------------------------------  164 (233)
                              +.    .--..++|+|+|.++                                                   
T Consensus       217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence                    00    000112233333322                                                   


Q ss_pred             ------------------EEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          165 ------------------FLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       165 ------------------~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                                        ++....+.+.+||.++.+++.... .|-..++.++|+++|..|+..|.||..-+--++..
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             eccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence                              222234467777777666665543 47788999999999999999999998766555433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.8e-18  Score=134.74  Aligned_cols=214  Identities=21%  Similarity=0.287  Sum_probs=149.0

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i   91 (233)
                      -+++.||++-|+|+.|+.+|.+|+|||.|-.+.|||+...   +.....-.||...|.++.|-|.. ..+++||+.|+.|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            3678999999999999999999999999999999998632   22222346899999999998853 4577999999999


Q ss_pred             EEEECCCCee----------eeeee-ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeee-e-----e-----c
Q 026765           92 RLWDARSGKC----------SQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR-R-----K-----F  148 (233)
Q Consensus        92 ~iwd~~~~~~----------~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~-----~-----~  148 (233)
                      +++|+...+.          ...+. ....+..++..|++ +.+.++++||+++.+|++....-.. .     .     .
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999974221          01111 11223457778887 7889999999999999975321100 0     0     0


Q ss_pred             CceeeEEEECCCC-CEEEEEeCCCeEEEEecCCc------------------eeeeEEe-eec--------C---ceeEE
Q 026765          149 GYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSL------------------RPLDTVV-AHT--------A---GCYCI  197 (233)
Q Consensus       149 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~------------------~~~~~~~-~~~--------~---~v~~i  197 (233)
                      -.+..++..+|.. .++++|+.+-..++||.+..                  +++..+. +|-        .   .++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            1245677778765 56788889999999993210                  0122222 121        1   13457


Q ss_pred             EECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          198 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       198 ~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .|+|+|.-|...=..-.|+++|+..++....|
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            89999987666555667999999988765443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=1.5e-17  Score=135.64  Aligned_cols=215  Identities=18%  Similarity=0.249  Sum_probs=157.6

Q ss_pred             eCccccEEEEEECcC-----------CCEEEEEeCCCCEEEEecccCCCCceee--------------------------
Q 026765           17 TGHKKKVHSVAWNCT-----------GTKLASGSVDQTARVWHIEPHGHGKVKD--------------------------   59 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~-----------~~~l~s~~~D~~v~vW~~~~~~~~~~~~--------------------------   59 (233)
                      --|..-|+.+.--|-           -..+.|++.|++||+|+++.-....+..                          
T Consensus       366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            357777877765441           2358999999999999986411111100                          


Q ss_pred             -------EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECC---CCCeEEEEcC
Q 026765           60 -------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKP---DGTHIAVGNR  128 (233)
Q Consensus        60 -------~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~~~  128 (233)
                             ...-+-...+++++.+|+++ .|++|..-|.++|||+.+-+..-..+ +..++.++.|+.   ..+.|++++.
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence                   01112345789999999875 67899999999999998765444333 345677887763   2467889999


Q ss_pred             CCcEEEEEcCCC-e----------eeeeeec----------------------------------------CceeeEEEE
Q 026765          129 DDELTILDVRKF-K----------PIHRRKF----------------------------------------GYEVNEIAW  157 (233)
Q Consensus       129 d~~i~i~d~~~~-~----------~~~~~~~----------------------------------------~~~~~~~~~  157 (233)
                      |..|++||+... .          .+...++                                        ...+..++.
T Consensus       525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence            999999986311 0          0000000                                        113567788


Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCceeeeEEee---ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .|+.+++++++.|.+|+||+...++..+.|.+   |.+....+..+|.|.|||+...|.++.++|.-+++|+.++-+|
T Consensus       605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH  682 (1080)
T KOG1408|consen  605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH  682 (1080)
T ss_pred             CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence            89999999999999999999999998888875   6566778899999999999999999999999999999887665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=1.7e-15  Score=122.10  Aligned_cols=209  Identities=28%  Similarity=0.492  Sum_probs=159.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ....+.+|...|.+++|+|++..+++++. |+.+++|++....    ....+.+|...|.+++|+|++..++++++.|+.
T Consensus       147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc----eEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            34567899999999999999999999986 9999999986411    223456799999999999876546666699999


Q ss_pred             EEEEECCCCeeee-eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee-eeee-ecCceeeEEEECCCCCEEEEE
Q 026765           91 VRLWDARSGKCSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRR-KFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        91 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      |++||...+.... ....+.......|+|++..+++++.|+.+++|+++.... .... .+...+..+.|.|++..++++
T Consensus       223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  302 (466)
T COG2319         223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG  302 (466)
T ss_pred             EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence            9999988666555 233332222127999998888999999999999986554 2222 234678888999988888888


Q ss_pred             eCCCeEEEEecCCceeeeEEe--eecCceeEEEECCCCCEEEEe-eCCCcEEEEecCCcE
Q 026765          168 TGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEML  224 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~~~  224 (233)
                      +.++.+.+|+...........  .|...+..+.+.+++..++.+ ..|+.+.+|++....
T Consensus       303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            888889999887766655555  787778899994332555555 688999999998776

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=2.3e-17  Score=121.44  Aligned_cols=210  Identities=20%  Similarity=0.337  Sum_probs=149.2

Q ss_pred             ccceeeeCccccEEEEEECcCCCE-EEEEeCC-------CCEEEEecccCC-CCceeeE----EEe-cCcCcEEEEEEcC
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTK-LASGSVD-------QTARVWHIEPHG-HGKVKDI----ELR-GHADSVDQLCWDP   76 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~-l~s~~~D-------~~v~vW~~~~~~-~~~~~~~----~~~-~h~~~v~~~~~~~   76 (233)
                      +..+.|..|.+.|+.++-+|.... |+|+-.|       -.+.||.+...- +.....+    .+. .+...|.++.|.|
T Consensus        54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P  133 (370)
T KOG1007|consen   54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP  133 (370)
T ss_pred             hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence            344678889999999999997654 5555432       246899875321 1111111    122 3445899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeee-eeeee------cCCeeEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeee
Q 026765           77 KHADLIATASGDKTVRLWDARSGKCS-QQAEL------SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK  147 (233)
Q Consensus        77 ~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~------~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  147 (233)
                      ++.+ +++ -.|..|.+|++..+... .....      ......-+|+|  +++.+++ ..|+++..||+|+.+....+.
T Consensus       134 ns~k-las-m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  134 NSDK-LAS-MDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CCCe-eEE-eccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchh
Confidence            7654 444 45889999999877542 22111      11223467887  5666654 457899999999877655443


Q ss_pred             --cCceeeEEEECCCCCEEEE-EeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCC
Q 026765          148 --FGYEVNEIAWNMTGEMFFL-TTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       148 --~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~  222 (233)
                        ++..+..+.|+|+.+.+++ ++.||.+++||.+. ..++..+.+|...|+++.|+|.. +++.+|+.|..|.+|.+.+
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence              5667999999999887655 56689999999974 56888899999999999999964 5788999999999999865


Q ss_pred             c
Q 026765          223 M  223 (233)
Q Consensus       223 ~  223 (233)
                      .
T Consensus       291 v  291 (370)
T KOG1007|consen  291 V  291 (370)
T ss_pred             c
Confidence            4

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.1e-17  Score=118.19  Aligned_cols=181  Identities=16%  Similarity=0.187  Sum_probs=135.4

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccC------CCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ..|.+-+++|.+++|+.|..+|+|.+..++.-      ..++.......+|..+|+.++|+.   .+|++|+ ||.|+=|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEe
Confidence            35666689999999999999999999987531      122333344579999999999983   3566765 5999988


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ..+.-...                          .+.-.+|.+.........+ -.+++.+...|..+.++.+++|+.++
T Consensus        87 ~W~E~~es--------------------------~~~K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~AgGD~~~y  139 (325)
T KOG0649|consen   87 EWNEEEES--------------------------LATKRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFAGGDGVIY  139 (325)
T ss_pred             eehhhhhh--------------------------ccchhhhhhcCccccCccc-CCccceeEeccCCCcEEEecCCeEEE
Confidence            76542110                          0112234332211111111 13688899999988888888999999


Q ss_pred             EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .||+++++....+.+|+.-|.++.--.....+.+|++||++||||.+++++++.++.+
T Consensus       140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence            9999999999999999999999988555667899999999999999999999988754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=6.9e-18  Score=136.00  Aligned_cols=204  Identities=25%  Similarity=0.402  Sum_probs=148.1

Q ss_pred             cccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           20 KKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        20 ~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      ...|+.+.|+|. ..+||.++.||.|++|.+...+..   ......+.+|.+.|+++.|+|--..+|+++++|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            457999999994 578999999999999998754432   1233467899999999999998888999999999999999


Q ss_pred             CCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeee--cCceeeEEEECCCCCEEEEEeCC-
Q 026765           96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRK--FGYEVNEIAWNMTGEMFFLTTGN-  170 (233)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-  170 (233)
                      +++.+....+. +.+.+..++|+|+|+.+++.+.|+++++|..++.+ ++...+  .+..-..+.|.-+|+++++.+-| 
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            99876544443 44678899999999999999999999999988643 333222  12234467788899998877644 


Q ss_pred             ---CeEEEEecCC--ceeeeEEeeecCc-eeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765          171 ---GTVEVLTYPS--LRPLDTVVAHTAG-CYCIAIDPMGR-YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       171 ---~~v~~~~~~~--~~~~~~~~~~~~~-v~~i~~~p~~~-~las~s~dg~v~iwd~~~~  223 (233)
                         ..+.+|+...  ..++.+......+ +.-=.+++|.. .|++|-.|..|.+|.+-.-
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence               5677777643  2333332211111 11112556554 5788889999999987543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1e-16  Score=119.63  Aligned_cols=195  Identities=15%  Similarity=0.253  Sum_probs=140.6

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .-|.-.|-.+-....+++++|++.|.+|.+|++..+..+     .+......-+..+.+|+| +++++++.--.|++|.+
T Consensus       184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~-----~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ-----SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             hhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee-----eeccccccccceeeCCCC-cEEEEecCCCCceEEEE
Confidence            357777777777778899999999999999998632111     112222334556789985 68889999999999986


Q ss_pred             C---CCe---eeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-------eeeee-----eecCceeeEE
Q 026765           97 R---SGK---CSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKF-------KPIHR-----RKFGYEVNEI  155 (233)
Q Consensus        97 ~---~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~-----~~~~~~~~~~  155 (233)
                      -   .|.   ..+.+.+.   ..+..++|+++...+++.+.||++++||..-.       ..+..     ...+.....+
T Consensus       258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL  337 (420)
T KOG2096|consen  258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL  337 (420)
T ss_pred             EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence            3   222   12233333   34567899999999999999999999996421       11111     0112234478


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      ..+|+|+.++++.+. .++++..++++....+. .|...|.+|+|+++|+++|+++ |+.++++-
T Consensus       338 ~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  338 ELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            899999998887665 68888888877766654 5899999999999999999987 66777765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=8.6e-18  Score=132.95  Aligned_cols=183  Identities=14%  Similarity=0.282  Sum_probs=137.1

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ....|.++|.|-.|+|||.-|+|+|.||.||+|.-.    +... ..+-....+|+|++|.|+..+++++.+  +.+.|=
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----GMLR-Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IK  171 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----GMLR-STVVQNEESIRCARWAPNSNSIVFCQG--GHISIK  171 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----chHH-HHHhhcCceeEEEEECCCCCceEEecC--CeEEEe
Confidence            457899999999999999999999999999999742    1111 112234578999999999888877655  455555


Q ss_pred             ECCCCe-eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeE
Q 026765           95 DARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus        95 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      .+.... ..+.-.+.+.+.++.|++..+.+++|++|-+.++||--.........+.+++++++|+|+ +.+++++-+ +.
T Consensus       172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~  249 (737)
T KOG1524|consen  172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TA  249 (737)
T ss_pred             ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-ee
Confidence            554433 333334556778999999999999999999999999655444445567789999999999 666666543 22


Q ss_pred             EEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEE
Q 026765          174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL  217 (233)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~i  217 (233)
                      ++           -....+.|+.++|||||..++.|...|.+.+
T Consensus       250 R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  250 RF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            21           1124567899999999999999999987654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.76  E-value=1.3e-16  Score=119.21  Aligned_cols=207  Identities=20%  Similarity=0.349  Sum_probs=148.3

Q ss_pred             ccccEEEEEEC-------cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--cCcC---cEEEEEEcCCCCCEEEEEe
Q 026765           19 HKKKVHSVAWN-------CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--GHAD---SVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        19 H~~~V~~~~~~-------~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~h~~---~v~~~~~~~~~~~~l~sg~   86 (233)
                      ....|+..+|-       |+..++|+.+.|.-|++||.-+...    ...++  .|.+   +..+++|+|++.+++  ++
T Consensus       103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l----raSy~~ydh~de~taAhsL~Fs~DGeqlf--aG  176 (406)
T KOG2919|consen  103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL----RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AG  176 (406)
T ss_pred             cCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc----ccchhhhhhHHhhhhheeEEecCCCCeEe--ec
Confidence            35678888885       6778899999999999999865321    11222  2333   456899999986543  57


Q ss_pred             CCCeEEEEEC-CCCeeee--------eeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEE
Q 026765           87 GDKTVRLWDA-RSGKCSQ--------QAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEI  155 (233)
Q Consensus        87 ~d~~i~iwd~-~~~~~~~--------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~  155 (233)
                      .+..|+++|+ +.|+-..        .+...+-..+++|+|-. ..+++|+....+-||.-...++.... .++..|+.+
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL  256 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence            8899999999 5554211        11123334568899955 47889998888888876666665443 345679999


Q ss_pred             EECCCCCEEEEEeC-CCeEEEEecCCc-eeeeEEeeecCcee---EEEECCCCCEEEEeeCCCcEEEEecCC-cEEEEee
Q 026765          156 AWNMTGEMFFLTTG-NGTVEVLTYPSL-RPLDTVVAHTAGCY---CIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTF  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~---~i~~~p~~~~las~s~dg~v~iwd~~~-~~~i~~~  229 (233)
                      .|+++|+.+.+|.. +..|..||++.. .++..+..|....+   -....|++++||+|+.||.|++||++. +..+..+
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            99999999998865 789999999754 45555666655222   355679999999999999999999987 6655554


Q ss_pred             ec
Q 026765          230 TK  231 (233)
Q Consensus       230 ~~  231 (233)
                      ..
T Consensus       337 ~~  338 (406)
T KOG2919|consen  337 GN  338 (406)
T ss_pred             cc
Confidence            43

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=1.3e-15  Score=120.84  Aligned_cols=200  Identities=12%  Similarity=0.155  Sum_probs=134.7

Q ss_pred             ccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      +....++|+|++++|++++. ++.|.+|+++..+........+. +......++++|++..++++...++.|.+||+.+.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            34678999999999988774 89999999864221110111122 23345678899987666677778899999999763


Q ss_pred             eeee-------eeeecCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCC--C--eeeeeeec-C------ceeeEEEECCC
Q 026765          100 KCSQ-------QAELSGENINITYKPDGTHIAVGNR-DDELTILDVRK--F--KPIHRRKF-G------YEVNEIAWNMT  160 (233)
Q Consensus       100 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~--~~~~~~~~-~------~~~~~~~~~~~  160 (233)
                      ....       .......+..+.|+|+++++++... ++.+.+||+..  .  +.+..... .      .....+.++|+
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            2211       1112334456899999999988776 89999999863  1  22222211 0      11235789999


Q ss_pred             CCEEEEEeC-CCeEEEEecCCceeeeEEeee---cCceeEEEECCCCCEEEEeeC-CCcEEEEecC
Q 026765          161 GEMFFLTTG-NGTVEVLTYPSLRPLDTVVAH---TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDIS  221 (233)
Q Consensus       161 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~  221 (233)
                      +++++++.. ++.+.+|+........++.++   ......++++|+|++|+++.. +++|.||+++
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999988864 789999998543222222222   224568999999999987775 8999999885

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=1.7e-17  Score=120.64  Aligned_cols=140  Identities=21%  Similarity=0.333  Sum_probs=111.1

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeee-----------eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eee--ee
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQ-----------AELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPI--HR  145 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~--~~  145 (233)
                      ++++|-.+|.+.+||+.++.....           .....++.++.+.+....=++|+.+..+..|.+...  ...  ..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            457778889999999988633221           223445667788776666678888888999887532  111  11


Q ss_pred             e-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          146 R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       146 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      . ..+..+..+..-||++.+++++-|+.+++|.+++.+++..+.-|...|++++|+|+...+|+||.|+.|-+|++
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            1 12346788899999999999999999999999999999999999999999999999999999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.6e-17  Score=121.76  Aligned_cols=194  Identities=16%  Similarity=0.209  Sum_probs=143.6

Q ss_pred             CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeeeec--C
Q 026765           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELS--G  109 (233)
Q Consensus        33 ~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~  109 (233)
                      +.+|++.+.|+|++||..+..    ...+++++...++.+.|... +++.+.+|+.||+|++||+|...........  .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~----~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ----LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh----hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            468888899999999987522    12367888888888888654 6788999999999999999987544333222  2


Q ss_pred             --CeeEEEECCCCCeEEEEcC----CCcEEEEEcCCCee-eeee--ecCceeeEEEECCCC-CEEEEEeCCCeEEEEecC
Q 026765          110 --ENINITYKPDGTHIAVGNR----DDELTILDVRKFKP-IHRR--KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       110 --~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~  179 (233)
                        +..+++..-.++.+++|.+    +-.+.+||.|..+. +..+  .+...|+++.|+|.. +.+++|+.||-+.++|..
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence              3344555556777887764    45789999998765 3322  245679999999975 677888999999999985


Q ss_pred             Cce---eeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          180 SLR---PLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       180 ~~~---~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ...   .+.....|...|.++.|..++ +.|.+-+..++..+|+++.+.+...+.
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            321   223333477889999998776 468888999999999999988765543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.6e-17  Score=125.64  Aligned_cols=209  Identities=14%  Similarity=0.222  Sum_probs=169.5

Q ss_pred             ccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           19 HKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        19 H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      -.-+|.++.|.|+|. .+++++.-.-...||+......++.  .+.++. ..+.....+|++ .+|+.+|..|.|.+--.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLha  332 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHA  332 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeecccccccccc--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehh
Confidence            366899999999998 8999999999999999765433322  223443 356677788875 58889999999999999


Q ss_pred             CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc--eeeEEEECCCCCEEEEEeCCCeEE
Q 026765           97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      .++.....+...+.+..+.|+.+++.|++++.+|.|.+||++....++......  .-++++.++++.++++|+..|.|.
T Consensus       333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN  412 (514)
T KOG2055|consen  333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN  412 (514)
T ss_pred             hhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence            999888888888888899999999999999999999999999887776654332  345677789999999999999999


Q ss_pred             EEecC------CceeeeEEeeecCceeEEEECCCCCEEEEeeC--CCcEEEEecCCcEEEEeee
Q 026765          175 VLTYP------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       175 ~~~~~------~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~--dg~v~iwd~~~~~~i~~~~  230 (233)
                      |||..      ..+|+..+..-...|++++|+|+.+.||.+|.  +..+|+--+.+......|+
T Consensus       413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP  476 (514)
T KOG2055|consen  413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP  476 (514)
T ss_pred             EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence            99964      35677777777788999999999999998885  5678888887776665554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.76  E-value=6.2e-17  Score=120.89  Aligned_cols=190  Identities=18%  Similarity=0.288  Sum_probs=141.3

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-ceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIEL---RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      -.+++|+|||.+|+.| ..++|||+|+...+.. .......   .+..+.+.+++|+|.+...++.|+.-..+-||.-..
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            3489999999999765 5799999998432211 1111111   234678899999999998999999999999998877


Q ss_pred             Ceeeeeee-ecCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCe-eeeeeec--CceeeE--EEECCCCCEEEEEeCCC
Q 026765           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFK-PIHRRKF--GYEVNE--IAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~  171 (233)
                      +++...+. ..+.+.-++|.++|+.+.+|.. +.+|..||+|..+ ++..+.-  +..-..  ....|.++.+++|+.+|
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence            76655544 3455677999999999999886 6789999998643 2221111  101112  34568899999999999


Q ss_pred             eEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765          172 TVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       172 ~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      .|++||++. +.....+..|...++.++++|--.++|+++...
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            999999986 565666777889999999999988899887554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.6e-17  Score=123.43  Aligned_cols=212  Identities=17%  Similarity=0.218  Sum_probs=153.8

Q ss_pred             CccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce-eeEEEe--cCcCcEEEEEEcCCCCCEEEEEe
Q 026765           10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELR--GHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        10 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .++.+.+.+|.+-|+++.|+..+.+||||+.|..++||.++..-..++ +.+.+.  .|...|.+++|+.. ...+++|+
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~  124 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGE  124 (609)
T ss_pred             chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCC
Confidence            344566789999999999999999999999999999999864211111 222333  46789999999875 46788999


Q ss_pred             CCCeEEEEECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeee---eecCceeeEEEECC
Q 026765           87 GDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHR---RKFGYEVNEIAWNM  159 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~---~~~~~~~~~~~~~~  159 (233)
                      .+++|.+.|+.+.+....+...   +.++.+..+|..+.+++.+.++.+.+||.+..+ ++..   ...+.....+-|+|
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            9999999999998876665543   367778899999999999999999999997644 2221   12233455677887


Q ss_pred             CC-CEEEEEeCCCeEEEEecCCce-eeeEE---eeec---CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          160 TG-EMFFLTTGNGTVEVLTYPSLR-PLDTV---VAHT---AGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       160 ~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~---~~~~---~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      .. .++++....+-+.+||.+... ++...   .+-.   ..-.++.|+|+|+.|.+--....-.+||+.+
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            65 456677888899999986432 22111   1111   1225688999999888776666677777765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=7.1e-19  Score=145.17  Aligned_cols=208  Identities=22%  Similarity=0.407  Sum_probs=154.5

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ++.+.||.++|+|+.|+..|.+++||+.|..||||..++..    +....+||...|+.++.+.+ ..++++++.|..|+
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----CLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----hhccCCCCccccchhccchh-hhhhhhcccCceEE
Confidence            35678999999999999999999999999999999976432    33467899999999998765 45779999999999


Q ss_pred             EEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee---------------eec--------
Q 026765           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR---------------RKF--------  148 (233)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------------~~~--------  148 (233)
                      +|-+..+..+..+. ..+.+.+++|+|-.    +.+.||++++||-+- .+...               ...        
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccc
Confidence            99999987665544 45678889999864    678899999999761 11000               000        


Q ss_pred             ---------CceeeEEEECCCCCEE-----------EEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE-E
Q 026765          149 ---------GYEVNEIAWNMTGEMF-----------FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-A  207 (233)
Q Consensus       149 ---------~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l-a  207 (233)
                               .++...++|....-.+           +++-.+..+.+|++.++.....+.+|...++.+.++|-+..+ .
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence                     0111122222222122           222334556677777777777788899999999999987665 5


Q ss_pred             EeeCCCcEEEEecCCcEEEEeee
Q 026765          208 VGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       208 s~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +++.||...|||+..+.+++.|.
T Consensus       413 sag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             hccCCCceEeeecccCCcceeee
Confidence            89999999999999999988764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=4.1e-17  Score=124.63  Aligned_cols=163  Identities=18%  Similarity=0.277  Sum_probs=131.7

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-------eeeecC-CeeEEEECCCC-CeEEEEcCCCcE
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-------QAELSG-ENINITYKPDG-THIAVGNRDDEL  132 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-------~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i  132 (233)
                      ..||+.+|..++|.|.+...|+|||.|.+|.||.+..+....       .+..+. .+.-++|+|.. +.|++++.|..+
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            569999999999999999999999999999999997664322       222222 23448899964 567899999999


Q ss_pred             EEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCCEEEEee-
Q 026765          133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGS-  210 (233)
Q Consensus       133 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~las~s-  210 (233)
                      .+|++.+++.+..+.+...+.++.|+.+|.++++.+.|..+++||.++++.+..-.+|.+. ..-+-|-.++..+.||- 
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence            9999999988877778888999999999999999999999999999999888777777653 23345666777555554 


Q ss_pred             --CCCcEEEEecCCcE
Q 026765          211 --ADSLVSLWDISEML  224 (233)
Q Consensus       211 --~dg~v~iwd~~~~~  224 (233)
                        .++.+-+||....+
T Consensus       237 r~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  237 RMSERQIALWDPNNLE  252 (472)
T ss_pred             cccccceeccCccccc
Confidence              57889999987654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=2.1e-15  Score=114.47  Aligned_cols=201  Identities=16%  Similarity=0.256  Sum_probs=150.0

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEEC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDA   96 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~   96 (233)
                      -...++...|+.+...|..|+.||. +++..++...  .  .........|..+-|+.   .+++-.+.+  +.+++.+.
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~--~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--C--FSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCce-eEEecCchHH--h--hcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEc
Confidence            3556778889999999999999886 7777654321  1  01111223455566653   355444444  35899999


Q ss_pred             CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--c--eeeEEEECCCCCEEEEEe--CC
Q 026765           97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--Y--EVNEIAWNMTGEMFFLTT--GN  170 (233)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~--~~  170 (233)
                      +.+..+-...+..++.++.+..  ++|+++-++. |.|||++..+.++.+...  .  .+..++.+..+.+++.-+  ..
T Consensus        76 Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   76 KKKTTICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             ccCceEEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            8887777777778888887754  4677776665 999999999988876543  2  244445555556887754  46


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCc-EEEEecCCcEEEEeee
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT  230 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~-v~iwd~~~~~~i~~~~  230 (233)
                      |.|.+||..+.++...+..|.+.+-+++|+|+|.+|||||+.|+ ||||.+.+|+.+++|.
T Consensus       153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            99999999999999999999999999999999999999999987 7999999999999885

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=5.5e-15  Score=117.20  Aligned_cols=202  Identities=15%  Similarity=0.132  Sum_probs=134.4

Q ss_pred             ccccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      +.+....++++|++++|+.++ .++.|.+|+++..  +......-.........++++|++..++++.-.++.|.+|++.
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~--g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD--GALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD  110 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC--CceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence            445677899999999986664 5899999998631  2222111111233456799999876555554558999999996


Q ss_pred             CCe-e---eeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeeee-------eeecCceeeEEEECCCCCEEE
Q 026765           98 SGK-C---SQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH-------RRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        98 ~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  165 (233)
                      +.. .   ............++++|++++++++. .++.|.+||+.+...+.       ....+.....+.|+|++++++
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence            432 1   12111122345678999999886544 56899999997633221       112244567899999999998


Q ss_pred             EEeC-CCeEEEEecCC----ceeeeEEeeec------CceeEEEECCCCCEEEEeeC-CCcEEEEecCC
Q 026765          166 LTTG-NGTVEVLTYPS----LRPLDTVVAHT------AGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE  222 (233)
Q Consensus       166 ~~~~-~~~v~~~~~~~----~~~~~~~~~~~------~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~  222 (233)
                      +... ++.+.+|+++.    .+.+..+..+.      .....+.++|++++|+++.. ++.|.+|++++
T Consensus       191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            8876 89999999863    23333333221      12336889999999888754 78999999854

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=4.2e-16  Score=114.89  Aligned_cols=202  Identities=21%  Similarity=0.364  Sum_probs=144.6

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE---EecCcCcEEEEEEcC-CCCCEEEEEeCCCeEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE---LRGHADSVDQLCWDP-KHADLIATASGDKTVRL   93 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~-~~~~~l~sg~~d~~i~i   93 (233)
                      .|-+.|.|+.|.|++..+++-. |..|.+|+++.... ....+.   -.+|....++-+|+| .+++.+ ....|++++.
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~  197 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQF  197 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcc-hheeecccccccccceecccccCCCCccceE-EEeCCCcEEE
Confidence            5667999999999999998876 99999999875321 112111   123566788889998 344555 4467899999


Q ss_pred             EECCCCeeeeeee--ecCCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCe-eeeeee-cCceeeEEEECCCCCE-EEEE
Q 026765           94 WDARSGKCSQQAE--LSGENINITYKPDGTH-IAVGNRDDELTILDVRKFK-PIHRRK-FGYEVNEIAWNMTGEM-FFLT  167 (233)
Q Consensus        94 wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-~~~~  167 (233)
                      ||+++..+...+.  ....+..+.|.|+..+ |++|+.|+.+++||.|+.+ ++.... +.+=+.++.|+|.... ++++
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence            9999766544332  2234677999998764 6788999999999998754 333322 3455889999998765 5566


Q ss_pred             eCCCeEEEEecCCc------------------------e-----eeeEEeeecCceeEEEECCCCCE-EEEeeCCCcEEE
Q 026765          168 TGNGTVEVLTYPSL------------------------R-----PLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSL  217 (233)
Q Consensus       168 ~~~~~v~~~~~~~~------------------------~-----~~~~~~~~~~~v~~i~~~p~~~~-las~s~dg~v~i  217 (233)
                      +.|..|.++.....                        +     .+.++..|...|++++||.-..+ +|+-|.||.+.|
T Consensus       278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            77888887753210                        0     12356678999999999987776 689999999998


Q ss_pred             EecCC
Q 026765          218 WDISE  222 (233)
Q Consensus       218 wd~~~  222 (233)
                      =++..
T Consensus       358 s~V~r  362 (370)
T KOG1007|consen  358 SSVPR  362 (370)
T ss_pred             ecCCh
Confidence            77654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=6.3e-16  Score=115.33  Aligned_cols=207  Identities=16%  Similarity=0.256  Sum_probs=161.0

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .|.--.++|+|-+|++|...+|.+.....|.||...... .....-+++.|...|+.++|+|.. +.|++++.|..-.+|
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW   82 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence            343447899999999999999999999999999876432 122334678899999999999985 457899999999999


Q ss_pred             EC-CCCeeeee---eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee-----eeeecCceeeEEEECCCCCEEE
Q 026765           95 DA-RSGKCSQQ---AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        95 d~-~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                      .. ..++...+   +.+.....++.|+|..+.+++|+.-..|.++-.+..+.-     ........+++++|+|++-+++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            98 44443333   334556778999999999999999999988877654322     2223456789999999999999


Q ss_pred             EEeCCCeEEEEecC-----C-------------ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          166 LTTGNGTVEVLTYP-----S-------------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       166 ~~~~~~~v~~~~~~-----~-------------~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +|+.|+..+++..-     .             ++.+..+....+.|..+.|+|+|..||=.+.|..+.+=|....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            99999999998631     0             1223333345678999999999999999999999999887644

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=7.1e-15  Score=120.21  Aligned_cols=209  Identities=14%  Similarity=0.160  Sum_probs=134.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-   89 (233)
                      +.+..+...+.+.+|+|||+.|+..+.   +..+.+|++....   ..  .+......+....|+|++..++++.+.++ 
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR--QVASFPRHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence            445566778999999999999986543   3468888875421   11  12222333456899999876666655555 


Q ss_pred             -eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC-CcEEE--EEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765           90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTI--LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        90 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                       .|.+||+.+++..+............|+|||+.|+..+.+ +...+  +|+.+.+...............|+|+|+.++
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence             5888999887654433333345678999999988766653 44444  4665543322222233345688999999988


Q ss_pred             EEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCc---EEEEecCCcEEEEeee
Q 026765          166 LTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL---VSLWDISEMLCVRTFT  230 (233)
Q Consensus       166 ~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~---v~iwd~~~~~~i~~~~  230 (233)
                      ....+   ..+.+|+..+++. ..+.. .......+|+|||++|+.++.++.   +.+++++ +...+.+.
T Consensus       347 ~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~  414 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP  414 (429)
T ss_pred             EEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence            76543   3577788766543 23332 122346789999999999888764   6777774 44444443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=9.4e-17  Score=128.49  Aligned_cols=196  Identities=18%  Similarity=0.309  Sum_probs=151.2

Q ss_pred             eCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      -.|...|+.+.|+..|.+|+|...   ...|.|.++..+...    .-++...+.|.++.|+|....+++ + ....|+|
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ----~PF~kskG~vq~v~FHPs~p~lfV-a-Tq~~vRi  591 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----SPFRKSKGLVQRVKFHPSKPYLFV-A-TQRSVRI  591 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc----CchhhcCCceeEEEecCCCceEEE-E-eccceEE
Confidence            358999999999999999999865   457888888653321    234445577899999998765554 3 3468999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-eeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ||+..+..+..+... ..+-.++.+|.|..|++|+.|+++.++|+... ++..... +...+..+++|+.-.++++++.|
T Consensus       592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            999876554443332 23445899999999999999999999998653 3333322 44568999999999999999999


Q ss_pred             CeEEEEecC---------CceeeeEEeeecCc----eeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          171 GTVEVLTYP---------SLRPLDTVVAHTAG----CYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       171 ~~v~~~~~~---------~~~~~~~~~~~~~~----v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                      |++.++...         .--+++.+.+|...    |..+.|+|...+|.+++.||+|++|
T Consensus       672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            999998642         12366778888754    8889999999999999999999998

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.7e-15  Score=115.72  Aligned_cols=202  Identities=15%  Similarity=0.202  Sum_probs=151.9

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDAR   97 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~   97 (233)
                      +++|-.++  ..+..|++|-.+|.+.+|.........-....+..+ ..+..+.-++..++++++||..  ..++|||+.
T Consensus       105 ~~~I~gl~--~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLK--LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchh--hcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            44444444  235578888899999999986432111122233333 5677777777778888999999  889999998


Q ss_pred             CCeeeeeee-ec---------CCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCC-eeeeeeec-CceeeEEEECCCCCE
Q 026765           98 SGKCSQQAE-LS---------GENINITYKPD--GTHIAVGNRDDELTILDVRKF-KPIHRRKF-GYEVNEIAWNMTGEM  163 (233)
Q Consensus        98 ~~~~~~~~~-~~---------~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~  163 (233)
                      ..+.+.+.. +.         -....+.|.+.  ...+++++.-+.+++||.+.. +++..... ..++.++...|.+++
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF  261 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence            874332211 11         11234678776  788999999999999999753 34444433 567899999999999


Q ss_pred             EEEEeCCCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ++++...+.+..+|.+.++.... +.+..+.|.+|-.+|..++||+++-|+.|||+|+++..
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            99999999999999998887766 77788899999999999999999999999999999843

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.5e-15  Score=125.07  Aligned_cols=205  Identities=17%  Similarity=0.220  Sum_probs=147.3

Q ss_pred             ccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC--ceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeCCCeEEEE
Q 026765           19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLW   94 (233)
Q Consensus        19 H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~d~~i~iw   94 (233)
                      -...|+|++|+|.. .++|.|..+|.|-+||+......  .........|..++..+.|..+-. .-++|++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            36789999999965 56788889999999999754331  112223456899999999965422 236799999999999


Q ss_pred             ECCCCeeee------ee-------eecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeee---------eeecCce
Q 026765           95 DARSGKCSQ------QA-------ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIH---------RRKFGYE  151 (233)
Q Consensus        95 d~~~~~~~~------~~-------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~  151 (233)
                      +++.-....      ..       .......++.|.+ +...+++|+..|.|.--+-...+...         -..+..+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            876432211      00       1112345678876 45678899999987653322111111         1123457


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~  223 (233)
                      +..+.++|-+..+++.++|-++++|... ...++..+..+...|++++|||... .|+++..||.+.|||+...
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            8899999999888888889999999987 6677777777888899999999774 6788889999999999744

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.72  E-value=2.3e-14  Score=115.56  Aligned_cols=207  Identities=27%  Similarity=0.485  Sum_probs=157.6

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEE-cCCCCCEEEEEeC-CCeE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCW-DPKHADLIATASG-DKTV   91 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~l~sg~~-d~~i   91 (233)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+.....   .....+.++. ..+..+.+ .+++...++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence            456899999999999999999999999999999986532   1222344433 36776766 6665534544444 9999


Q ss_pred             EEEECCC-Ceeeeeeeec-CCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765           92 RLWDARS-GKCSQQAELS-GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (233)
                      .+||... .........+ ..+..+.|+|++..+++++. ++.+.+|++.....+.... +...+..+.|++++..++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            9999987 4444444433 44556999999998888885 9999999998755555444 46679999999999844444


Q ss_pred             -eCCCeEEEEecCCceeee-EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          168 -TGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       168 -~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                       +.++.+.+|+......+. .+.+|...+ ...|+|++.++++++.|+.+++||+.....
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence             889999999887666666 577787775 448999998999999999999999986654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.72  E-value=1.6e-15  Score=123.24  Aligned_cols=201  Identities=19%  Similarity=0.303  Sum_probs=140.2

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC--
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--   99 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~--   99 (233)
                      .|+.++|-|||..|+-+. +..+.+||++.++    ....+++|++.|++++|+.+| +.++||+.|+.|.+|+-.-.  
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~----llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT----LLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI   87 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc----cccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce
Confidence            899999999999987766 5678899987543    223689999999999999875 67899999999999985421  


Q ss_pred             ---------eeeeeeee---------------------------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765          100 ---------KCSQQAEL---------------------------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI  143 (233)
Q Consensus       100 ---------~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  143 (233)
                               +|+.....                           .....+++|..||.+++.|..+|+|.+=+-...+.+
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence                     12111000                           011345889999999999999999988764332222


Q ss_pred             eeee---cCceeeEEEECCCC-----CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765          144 HRRK---FGYEVNEIAWNMTG-----EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (233)
Q Consensus       144 ~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v  215 (233)
                      .-..   .+.++.+++|+|..     +.+++..-+.++.++.+. ++.+..-..-.....|+++.|+|.++..|+.|+.+
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L  246 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL  246 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence            2222   24578999999864     345555556666666553 33333222233445799999999999999999999


Q ss_pred             EEEecCCcEEEEeee
Q 026765          216 SLWDISEMLCVRTFT  230 (233)
Q Consensus       216 ~iwd~~~~~~i~~~~  230 (233)
                      .+|-.+ |-.+-+..
T Consensus       247 ~~fTR~-GvrLGTvg  260 (1081)
T KOG1538|consen  247 SLFTRD-GVRLGTVG  260 (1081)
T ss_pred             EEEeec-CeEEeecc
Confidence            999654 54444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=4.4e-15  Score=108.35  Aligned_cols=154  Identities=21%  Similarity=0.347  Sum_probs=109.2

Q ss_pred             EEEEcCCCCCEEEEEeC---------CCeEEEEECCCCe-eeeeeee--cCCeeEEEECCCCCeEEEE--cCCCcEEEEE
Q 026765           71 QLCWDPKHADLIATASG---------DKTVRLWDARSGK-CSQQAEL--SGENINITYKPDGTHIAVG--NRDDELTILD  136 (233)
Q Consensus        71 ~~~~~~~~~~~l~sg~~---------d~~i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d  136 (233)
                      .+.|+|.|..+++....         -+...+|-++... .......  .+++.+++|+|+++.+++.  ..+..+.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            45677777666555441         1334555553322 2223333  3457889999999997654  3567899999


Q ss_pred             cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC--
Q 026765          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA--  211 (233)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~--  211 (233)
                      ++ .+.+.... ....+.+.|+|+|+++++++-   .|.+.+||.++.+.+....  ...+..++|+|+|++|++++.  
T Consensus        90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEEEEecc
Confidence            96 44444443 346788999999999998863   4789999999888876654  335789999999999998874  


Q ss_pred             ----CCcEEEEecCCcEEEEee
Q 026765          212 ----DSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       212 ----dg~v~iwd~~~~~~i~~~  229 (233)
                          |+.++||+.. |..+.+.
T Consensus       166 r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ceeccccEEEEEec-CeEeEec
Confidence                7889999996 7666654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.9e-14  Score=118.14  Aligned_cols=205  Identities=13%  Similarity=0.124  Sum_probs=136.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      .+.+..|...+.+.+|+|||+.|+..+.   +..|.+|++....   .  ..+..+...+...+|+|++..++++.+.++
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---R--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---E--EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            3557788889999999999999988764   4679999986422   1  234455667778899999877777777766


Q ss_pred             e--EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765           90 T--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        90 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                      .  |.+||+.++................|+|||++|+..+. ++  .|.++|+...+...............|+|+|+.+
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence            5  66678887765443222233456899999998886653 33  5777887654433222223345567899999999


Q ss_pred             EEEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC------CcEEEEecCCcE
Q 026765          165 FLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEML  224 (233)
Q Consensus       165 ~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d------g~v~iwd~~~~~  224 (233)
                      +....+   ..+.+++..... ...+. ....+...+|+|+|++|+..+.+      ..+.++|+..+.
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            876543   356777764432 22222 22345678999999988765543      257788876543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.2e-14  Score=119.21  Aligned_cols=204  Identities=15%  Similarity=0.132  Sum_probs=135.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      .+.+..|...+.+.+|+|||+.|+..+.+   ..|.+|++....   .  ..+...........|+|++..++++.+.++
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~--~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---R--ELVASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---E--EEeccCCCCccCceECCCCCEEEEEEeCCC
Confidence            34566778889999999999999888743   358888885422   1  123333444557899999877777766665


Q ss_pred             --eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        90 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                        .|.+||+.+++...............|+|||++++..+. ++.  +.++|+.+.+.......+......+|+|+|+.+
T Consensus       271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence              588999988765443222233456899999998886653 444  566666554332211222234467999999999


Q ss_pred             EEEeCCC---eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC---CcEEEEecCCc
Q 026765          165 FLTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEM  223 (233)
Q Consensus       165 ~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d---g~v~iwd~~~~  223 (233)
                      +....++   .+.+|+..+++.. .+. +.......+|+|+|++|+..+.+   +.+.++++..+
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            8775433   6888898766543 332 33334567899999988776653   45788888643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.1e-14  Score=105.15  Aligned_cols=190  Identities=13%  Similarity=0.198  Sum_probs=133.5

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      -..|+++-..|..+-++.++.|+.+.-||++..   + ...+++||++.|.++.--...+. ++||+.||++|+||.+++
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G---~-i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~  188 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDG---R-IQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQ  188 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCC---E-EEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEecccc
Confidence            456899999998887778888999999999853   3 34579999999999987333344 569999999999999999


Q ss_pred             eeeeeeeecCCe---------eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765          100 KCSQQAELSGEN---------INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       100 ~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ++++.+......         .-.+..-+..++++|+ ...+.+|.++..+++.......++..+.|  ..+.+++++..
T Consensus       189 k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F--~~d~vl~~G~g  265 (325)
T KOG0649|consen  189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDF--VDDCVLIGGEG  265 (325)
T ss_pred             ceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecccceeEeee--ecceEEEeccc
Confidence            987766543221         1244455566776554 56799999999988887777767777766  55678888888


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCC-CCEEEEeeCCCcEEEE
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLW  218 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~las~s~dg~v~iw  218 (233)
                      +.+.-|.+. +.............++.+++-. -++|..++....+.|+
T Consensus       266 ~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  266 NHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            888888764 2222222222223444444422 2566667777777665

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=4.3e-16  Score=117.06  Aligned_cols=209  Identities=18%  Similarity=0.231  Sum_probs=140.2

Q ss_pred             cceeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCC---------C-------------ceee--------
Q 026765           12 HSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGH---------G-------------KVKD--------   59 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~---------~-------------~~~~--------   59 (233)
                      ..++|.+|.+.++.+.|..  ....+.||+.||+||+||+..+..         .             .+..        
T Consensus        62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s  141 (376)
T KOG1188|consen   62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRS  141 (376)
T ss_pred             hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence            4567899999999999976  456789999999999999753210         0             0000        


Q ss_pred             ---E--------------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeeecCCeeEEEECC
Q 026765           60 ---I--------------ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKP  118 (233)
Q Consensus        60 ---~--------------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~  118 (233)
                         +              -...|.+-|+++.|+|.++++|+||+-||.|.+||+....    ....+.....+-.+.|..
T Consensus       142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~  221 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS  221 (376)
T ss_pred             ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence               0              0236899999999999999999999999999999997652    222333344456688876


Q ss_pred             CC-CeEEEEcCCCcEEEEEcCCCeeeeeeecC--------------ceeeEEEECCCCCEEEEEeC-CCeEEEEecC---
Q 026765          119 DG-THIAVGNRDDELTILDVRKFKPIHRRKFG--------------YEVNEIAWNMTGEMFFLTTG-NGTVEVLTYP---  179 (233)
Q Consensus       119 ~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~---  179 (233)
                      ++ +.|.+-+-.....+|++............              .-|+... ..+...+++++. .+...++-+.   
T Consensus       222 ~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~  300 (376)
T KOG1188|consen  222 KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTS  300 (376)
T ss_pred             CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecc
Confidence            65 45777777888999998765432221110              1122211 223445555544 4555555432   


Q ss_pred             Cc---eeeeEEee-ecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          180 SL---RPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       180 ~~---~~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ++   .....+.+ |..-|.++.|.-.+..+.||++||.+++|...
T Consensus       301 s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  301 SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            11   22233444 66678889999889999999999999999853

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=7e-16  Score=118.24  Aligned_cols=185  Identities=18%  Similarity=0.300  Sum_probs=138.8

Q ss_pred             ccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCc----e-eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           19 HKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK----V-KDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        19 H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~----~-~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+|+.+.|.+.+. .+|||+.|..||+|.++....+.    + ....+..|..+|+.+.|+|++ .+|+||+.+|.|.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~   90 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVF   90 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEE
Confidence            367899999998776 99999999999999987533222    1 122467899999999999985 6899999999999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCe
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      +|....-+.   +  .... .....+. .++          ++.       ....+..++..++|+++++++++++.|+.
T Consensus        91 lWk~~~~~~---~--~~d~-e~~~~ke-~w~----------v~k-------~lr~h~~diydL~Ws~d~~~l~s~s~dns  146 (434)
T KOG1009|consen   91 LWKQGDVRI---F--DADT-EADLNKE-KWV----------VKK-------VLRGHRDDIYDLAWSPDSNFLVSGSVDNS  146 (434)
T ss_pred             EEEecCcCC---c--cccc-hhhhCcc-ceE----------EEE-------EecccccchhhhhccCCCceeeeeeccce
Confidence            998654110   0  0000 0000000 011          111       01114457889999999999999999999


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      +++||...+.....+..|..-|..++|.|-++++++-+.|+..+++.+.....++.
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~  202 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR  202 (434)
T ss_pred             EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence            99999999999999999999999999999999999999999988888876554443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=1.2e-15  Score=120.88  Aligned_cols=195  Identities=20%  Similarity=0.256  Sum_probs=141.0

Q ss_pred             CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----------
Q 026765           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----------  100 (233)
Q Consensus        31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~----------  100 (233)
                      .+--|+.|=.-|.|.+.|.......+....+..-.+..|+++.|-|.+..+++.+-.+|.+.+||.....          
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            4555667766778877776432211111101111346899999999888888889999999999763210          


Q ss_pred             ----e--------------eeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCC
Q 026765          101 ----C--------------SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT  160 (233)
Q Consensus       101 ----~--------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~  160 (233)
                          .              ...+. ..+.+...+|+|||++||+.+.||.++|||..+.+.+-..+ .-....+++|+||
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence                0              00000 11223457899999999999999999999987755443322 1235789999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC-----------------------------------C--
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----------------------------------G--  203 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-----------------------------------~--  203 (233)
                      |++|++|++|.-|.+|.+...+.+..=.+|.+.|..|+|+|-                                   +  
T Consensus       344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~  423 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP  423 (636)
T ss_pred             ccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence            999999999999999999999988888899999999999831                                   1  


Q ss_pred             -----------CEEEEeeCCCcEEEEecCCcEE
Q 026765          204 -----------RYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       204 -----------~~las~s~dg~v~iwd~~~~~~  225 (233)
                                 -.|.+.+.|..+.+||+.....
T Consensus       424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             ccccccccceEEEeecccccceEEEEecchhhc
Confidence                       1477888999999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.2e-16  Score=123.34  Aligned_cols=213  Identities=10%  Similarity=0.095  Sum_probs=143.5

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc---CC-CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---HG-HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~---~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ++..|...|+.++|.|....|++|+.|+++++|++..   .. ......+++++|..+|.|++..+++ ..+++|+-||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCce
Confidence            6778999999999999999999999999999999932   11 1123456789999999999998875 57789999999


Q ss_pred             EEEEECCCCe----------eeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee--eeeecCceeeEEEE
Q 026765           91 VRLWDARSGK----------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRRKFGYEVNEIAW  157 (233)
Q Consensus        91 i~iwd~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~  157 (233)
                      |+.|++....          ....+. ....++.+++++....|++++.||+++.|+.....+.  ...+......++++
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence            9999775221          111122 2234557889999899999999999999997655541  11111112233333


Q ss_pred             CCCCCEEEEEeCCCeEEEEe---cCCceeeeEEeee-------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          158 NMTGEMFFLTTGNGTVEVLT---YPSLRPLDTVVAH-------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~-------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      ....  .+....+.....+.   ......+..+...       ...++-+-++|.+.+..++-.|+.|+++|...+.++.
T Consensus       448 ~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  448 TSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             ccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            2222  11122222233333   3222222222111       1235667888999999999999999999999998876


Q ss_pred             eee
Q 026765          228 TFT  230 (233)
Q Consensus       228 ~~~  230 (233)
                      ...
T Consensus       526 s~~  528 (577)
T KOG0642|consen  526 SMV  528 (577)
T ss_pred             hee
Confidence            543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=6.9e-15  Score=108.62  Aligned_cols=193  Identities=21%  Similarity=0.313  Sum_probs=139.5

Q ss_pred             eCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           17 TGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      +.|.+++++..|+.- =+++.+.|-|-+..|||++.+-... ...++-+|...|+.++|...+..+++|.|.||.+|+||
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            457889999999874 4788999999999999998642222 23467789999999999987788999999999999999


Q ss_pred             CCCCeeeeee-e--e-cCCeeEEEECCC-CCeEEEEcCC-CcEEEEEcCCCe-eeee-eecCceeeEEEECCCCCE-EEE
Q 026765           96 ARSGKCSQQA-E--L-SGENINITYKPD-GTHIAVGNRD-DELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEM-FFL  166 (233)
Q Consensus        96 ~~~~~~~~~~-~--~-~~~~~~~~~~~~-~~~l~~~~~d-~~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~~  166 (233)
                      ++.-.-.... +  . +.+-..++|+++ .+++|+-..| ..+.|.|+|... ++.+ ..+...++.++|.|.... +++
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence            9865321111 1  1 223345777664 5677766655 569999998643 3322 345678999999987654 666


Q ss_pred             EeCCCeEEEEecCCc------eeeeEEeeecCceeEEEECCC-CCEEEEeeC
Q 026765          167 TTGNGTVEVLTYPSL------RPLDTVVAHTAGCYCIAIDPM-GRYFAVGSA  211 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~------~~~~~~~~~~~~v~~i~~~p~-~~~las~s~  211 (233)
                      ++.|..+.+||+...      .++..+. -++.|+.+.|++. ..+++.+..
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence            777899999998642      1233333 4668999999964 567777764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.67  E-value=3.2e-15  Score=112.00  Aligned_cols=164  Identities=21%  Similarity=0.366  Sum_probs=122.4

Q ss_pred             CccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEE---EecCcCcEEEEEEcCCCCCEEEEE
Q 026765           10 NLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIE---LRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        10 ~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      .+..+.|.+|...|+.+.|.|+. ++++|||.|.+||+|+++..    .+...   +.||.+.|.++.|++++. .|+|+
T Consensus       125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~----~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~Sc  199 (385)
T KOG1034|consen  125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD----VCVAVFGGVEGHRDEVLSVDFSLDGD-RIASC  199 (385)
T ss_pred             hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC----eEEEEecccccccCcEEEEEEcCCCC-eeecc
Confidence            34456788999999999999987 67899999999999999753    23333   357999999999999865 78999


Q ss_pred             eCCCeEEEEECCCCee------e----------------ee-----------------------------------eee-
Q 026765           86 SGDKTVRLWDARSGKC------S----------------QQ-----------------------------------AEL-  107 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~------~----------------~~-----------------------------------~~~-  107 (233)
                      +.|.++++|++...+.      .                ..                                   +.+ 
T Consensus       200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecc
Confidence            9999999999872210      0                00                                   000 


Q ss_pred             --cCC-----------------------e--eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----cCceeeEE
Q 026765          108 --SGE-----------------------N--INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEI  155 (233)
Q Consensus       108 --~~~-----------------------~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~  155 (233)
                        +..                       +  +..+|+|-.+.|+.|.+.|++.+|||+..++.....     .+..+...
T Consensus       280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~  359 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT  359 (385)
T ss_pred             hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence              000                       0  012345556788999999999999998876632222     24568889


Q ss_pred             EECCCCCEEEEEeCCCeEEEEec
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTY  178 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~  178 (233)
                      +|+.++..+++.+.+++|.-||.
T Consensus       360 sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  360 SFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eecccCcEEEEEeCCCcEEEEEe
Confidence            99999999999999999999985

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.1e-13  Score=113.22  Aligned_cols=206  Identities=16%  Similarity=0.173  Sum_probs=129.5

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      +.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+....   ..  .+......+...+|+|++..++++.+.++.
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RR--VVANFKGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence            3455678889999999999999887753   348888886422   11  233334456688999998777777888888


Q ss_pred             EEEEEC--CCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CCcEEEEEc--CCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765           91 VRLWDA--RSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        91 i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                      ..||.+  ..+................|+|||++++..+. ++...+|.+  .+.........+.......|+|+|++++
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            777754  44432221111223345789999998875553 455666654  3332211111122234578999999998


Q ss_pred             EEeCCC---eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEEE
Q 026765          166 LTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVR  227 (233)
Q Consensus       166 ~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i~  227 (233)
                      ..+.++   .+.+|+..+++.. .+.. .......+|+|+|++|+.++.++   .+.+-++. +...+
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~  408 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQ  408 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceE
Confidence            776543   6889998766543 2322 22346789999999988777554   24555553 43333

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=4.9e-14  Score=121.18  Aligned_cols=221  Identities=16%  Similarity=0.162  Sum_probs=152.4

Q ss_pred             CCccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC-c--eeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765            9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-K--VKDIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus         9 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      +...+..+..|...|..++.+++. .+++|||.||+||+|+...-... .  .....+......+.++..-+.+ ..+|.
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence            445566777899999999988765 99999999999999997531111 1  1222333345667777777665 46678


Q ss_pred             EeCCCeEEEEECCCCe-------eeeeeee--cCCeeEE-EEC-CCCC-eEEEEcCCCcEEEEEcCCCeeeeeeec---C
Q 026765           85 ASGDKTVRLWDARSGK-------CSQQAEL--SGENINI-TYK-PDGT-HIAVGNRDDELTILDVRKFKPIHRRKF---G  149 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~-------~~~~~~~--~~~~~~~-~~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~  149 (233)
                      |+.||.|++.++....       +.+....  .+..+.+ ++. ..+. .++.+..-+.+..||+++...+...+.   .
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            8999999999986521       1111111  1222222 221 2233 677788888999999998766554443   2


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCC---CEEEE-ee-CCCcEEEEecCCc
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMG---RYFAV-GS-ADSLVSLWDISEM  223 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~---~~las-~s-~dg~v~iwd~~~~  223 (233)
                      ..+++++.+|.++.++.|+..|.+.+||++-..++.... ++..++..+..+|--   ...++ ++ ..+.|-+||+..|
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            458999999999999999999999999998777766543 344667777766543   34444 44 5788999999999


Q ss_pred             EEEEeee
Q 026765          224 LCVRTFT  230 (233)
Q Consensus       224 ~~i~~~~  230 (233)
                      .|-++|-
T Consensus      1276 ~~~~vl~ 1282 (1431)
T KOG1240|consen 1276 LRQTVLW 1282 (1431)
T ss_pred             cceEEEE
Confidence            8887764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.8e-14  Score=122.34  Aligned_cols=206  Identities=17%  Similarity=0.279  Sum_probs=137.2

Q ss_pred             cccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCCCceeeE----EEe----cCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           20 KKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDI----ELR----GHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        20 ~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~----~~~----~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ...|+.+.+-.  |..++++|+.||.||||+--....++.+.+    .+.    +-.+.-.-++|.+..++++ ++|.-.
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVR 1187 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCee
Confidence            44588888743  456899999999999997533211111111    111    2222224568888776665 445578


Q ss_pred             eEEEEECCCCeeeeeeeecCC--eeEEE-ECCCCCeEEEEcCCCcEEEEEcCCCee---eeeee-cCc--eeeEEEECCC
Q 026765           90 TVRLWDARSGKCSQQAELSGE--NINIT-YKPDGTHIAVGNRDDELTILDVRKFKP---IHRRK-FGY--EVNEIAWNMT  160 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~-~~~--~~~~~~~~~~  160 (233)
                      .|+|||....++.........  +..+. -.+.|+.+++|..||.+++||.|...+   +...+ +..  +|..+.+.+.
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence            999999987766554443322  22222 233578999999999999999886443   22222 222  3778888876


Q ss_pred             CCE-EEEEeCCCeEEEEecCCce--eeeEEeeec--C-ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          161 GEM-FFLTTGNGTVEVLTYPSLR--PLDTVVAHT--A-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       161 ~~~-~~~~~~~~~v~~~~~~~~~--~~~~~~~~~--~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      |-. +++++.+|.|++||++...  ...++..|.  + ..+++..+++...+|+|+. +.|+||++. |+.+..
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcc
Confidence            655 8999999999999998632  223333443  3 4899999999999999999 999999987 444333

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=1.9e-14  Score=118.63  Aligned_cols=208  Identities=18%  Similarity=0.217  Sum_probs=147.8

Q ss_pred             eCccccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCC-ceeeEEEe-------cCcCcEEEEEEcCCCCCEEEEEe
Q 026765           17 TGHKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHG-KVKDIELR-------GHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      ..|..+|+++.|..+-  .-++|+|.||.|..|+++.-... .....+..       .-...+++++|.+..+..++.|.
T Consensus       288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT  367 (555)
T KOG1587|consen  288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT  367 (555)
T ss_pred             ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence            4699999999997643  55999999999999987532110 00111111       12346889999999899999999


Q ss_pred             CCCeEEEE---ECCCCe------eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC-CCeeeeeeecCc-eeeEE
Q 026765           87 GDKTVRLW---DARSGK------CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGY-EVNEI  155 (233)
Q Consensus        87 ~d~~i~iw---d~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~-~~~~~  155 (233)
                      .+|.|..=   +.+...      ......+.+.+.++.++|=+..++..+.|-.+++|... ...++....... .++.+
T Consensus       368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v  447 (555)
T KOG1587|consen  368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV  447 (555)
T ss_pred             CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee
Confidence            99998762   222222      01112234566778888866655544449999999976 555554444333 48999


Q ss_pred             EECCCCCE-EEEEeCCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          156 AWNMTGEM-FFLTTGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       156 ~~~~~~~~-~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +|+|.... |+++..+|.+.+||+.  ..+++.+...+....+.+.|+++|+.|++|...|.+.+|++.+..
T Consensus       448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL  519 (555)
T ss_pred             EEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence            99998765 5666779999999985  445666665566666789999999999999999999999997543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3.9e-14  Score=116.00  Aligned_cols=177  Identities=20%  Similarity=0.281  Sum_probs=117.1

Q ss_pred             CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeecCCeeEEEEC
Q 026765           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYK  117 (233)
Q Consensus        41 D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  117 (233)
                      +..|.+||.+...     ...+..|...+....|+|++..+ +..+.+   ..|.+||+.+++........+....++|+
T Consensus       183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            5689999875422     12355677889999999997655 444432   47999999887643333334445568999


Q ss_pred             CCCCeEEEEc-CCCcEEEE--EcCCCeeeeeeecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCceeeeEEeeecCc
Q 026765          118 PDGTHIAVGN-RDDELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAHTAG  193 (233)
Q Consensus       118 ~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~  193 (233)
                      |||+.|+.+. .++...+|  |+.+.+..........+....|+|+|+.++..+ .++...+|+.+..........+.. 
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-  335 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-  335 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence            9999988765 57765555  655444332222334567889999999877654 577888887643211112223332 


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                       ...+|+|+|++|+..+.++ +.+||+.++...
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~  366 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTE  366 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence             4678999999998888766 555999887653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=1.7e-13  Score=100.03  Aligned_cols=151  Identities=20%  Similarity=0.407  Sum_probs=105.7

Q ss_pred             EEEEECcCCCEEEEEeC---CC-------CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEE-EEeCCCeEE
Q 026765           24 HSVAWNCTGTKLASGSV---DQ-------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA-TASGDKTVR   92 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~---D~-------~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-sg~~d~~i~   92 (233)
                      -.+.|+|+|+.|+.-..   |.       ...+|.++... .....+++. ...+|.+++|+|++..+++ .|..++.|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-Cccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            35789999987654322   33       35566664322 223333343 3356999999999877643 455678999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      +||++ ++....+. ......+.|+|+|+++++++.+   |.+.+||+++.+.+....+. .+..+.|+|+|+++++++.
T Consensus        87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence            99997 44333332 3344569999999999988754   56999999988887665554 4689999999999998864


Q ss_pred             ------CCeEEEEecC
Q 026765          170 ------NGTVEVLTYP  179 (233)
Q Consensus       170 ------~~~v~~~~~~  179 (233)
                            |+.++||++.
T Consensus       164 ~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ccceeccccEEEEEec
Confidence                  6778888874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.63  E-value=4.1e-13  Score=109.84  Aligned_cols=208  Identities=15%  Similarity=0.206  Sum_probs=135.3

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-   89 (233)
                      +.+..+...+...+|+|+|++|+.++.+   ..|.+|++....   ..  .+..+...+..++|+|++..++++.+.++ 
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---RE--KVASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence            4566677789999999999999887654   478899886421   11  23345556677899999876766666554 


Q ss_pred             -eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765           90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        90 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                       .|.+||+.++................|+|++++|+..+. ++  .|.++|+.+.+...............|+|++++++
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence             588889887654433322233345789999998876554 33  57777876554332222334456778999999999


Q ss_pred             EEeCCC---eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEEEee
Q 026765          166 LTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTF  229 (233)
Q Consensus       166 ~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i~~~  229 (233)
                      ....++   .+.+++..+... ..+.. .......+|+|++++|+..+.++   .+.+.+.. +...+.+
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~  404 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL  404 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence            887765   778888766432 22222 22234568999999988777654   35555544 4344433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=1.5e-15  Score=118.33  Aligned_cols=199  Identities=19%  Similarity=0.263  Sum_probs=156.8

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  102 (233)
                      =+.+.++.+|.+|+-|+.-|.|..+|..+..    ...++. -...|.++.|-.+. .++ +..+.+.+.|||-. |...
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~-v~Etv~Dv~~LHne-q~~-AVAQK~y~yvYD~~-GtEl  203 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEIN-VMETVRDVTFLHNE-QFF-AVAQKKYVYVYDNN-GTEL  203 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccce----eeeeee-hhhhhhhhhhhcch-HHH-HhhhhceEEEecCC-CcEE
Confidence            3567889999999999999999998875421    112222 23578888887653 454 45678899999964 3434


Q ss_pred             eeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEEeCCCeEEEEecCCc
Q 026765          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL  181 (233)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  181 (233)
                      +.+.....+..+.|.|---.|++++..|.++.-|+..++.+.....+ ..+..+.-+|-.-.+-+|..+|+|.+|.....
T Consensus       204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence            44444556677889998777888888999999999888877665543 35666777888888889999999999999999


Q ss_pred             eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +++..+..|.++|.+|++.++|+|+||.+.|..++|||++.-..++++
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            999999999999999999999999999999999999999876655543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.8e-14  Score=121.13  Aligned_cols=195  Identities=21%  Similarity=0.339  Sum_probs=137.8

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--  101 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--  101 (233)
                      .-++|.....+|+++|.=+.|||||+..+.  ....+ ..+-...|+++.-+...++++++|-.||.|++||.+....  
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~--~~~di-P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ--VVADI-PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccce--eEeec-ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence            456777766666666667999999987522  12221 1234557888877666678999999999999999875432  


Q ss_pred             -eeee-eecC--CeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeee--ee----ecCceeeEEEECCCCCEEEEEeCC
Q 026765          102 -SQQA-ELSG--ENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIH--RR----KFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       102 -~~~~-~~~~--~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                       +... .+..  .+..+.+.+.|-. +++|+.+|.|.+||+|......  ..    ..+...+++..|+....+++|+. 
T Consensus      1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~- 1324 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA- 1324 (1387)
T ss_pred             cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-
Confidence             1111 1222  2667888776654 9999999999999999842211  11    11345889999999999999988 


Q ss_pred             CeEEEEecCCceeeeEEe------e-ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          171 GTVEVLTYPSLRPLDTVV------A-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~------~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +.++||+.. ++.+..+.      + ....+.|++|+|...+||+|+.|.+|.||.....
T Consensus      1325 q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            999999974 23222222      1 2345789999999999999999999999987654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1.2e-14  Score=109.16  Aligned_cols=188  Identities=15%  Similarity=0.291  Sum_probs=122.6

Q ss_pred             EEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           23 VHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        23 V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      |.-+.|..|..++ .....|+.|.+|++....  ..+  .+..-.+++..++|+|++.++|.+...|-.|.+|.+.+.++
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~c--kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYC--KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecce--eEE--EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            4445565555443 334567788888875422  222  34455678999999999999999999999999999998776


Q ss_pred             eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC---CCeeeeeeec-CceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      ...-........++|+|||++.+..+.......+.+.   ........+. ....+.+.|+|||+.+++-..-=..++  
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--  204 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--  204 (447)
T ss_pred             EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--
Confidence            5443334444668999999998877754332222211   1111111111 235678899999987765532111111  


Q ss_pred             cCCceeeeEEeee-cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          178 YPSLRPLDTVVAH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       178 ~~~~~~~~~~~~~-~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                               +.-| +-++..++|+|.+++||.|+.|+.+||-|--+=+.
T Consensus       205 ---------~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  205 ---------YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             ---------eeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                     1222 24678899999999999999999999977544333

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.7e-13  Score=113.02  Aligned_cols=120  Identities=20%  Similarity=0.302  Sum_probs=96.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .|...++|.+++|.+.++|+|..||.|.+|.-............+.-|.+.|.+++|+++|. +|+|||..+-+-+|.+.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeec
Confidence            57888999999999999999999999999964321112223335667999999999999875 66799999999999999


Q ss_pred             CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      +++....-...+.+..+.++||+...++..+|..|.+..+.
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            88732222345667789999999999999999999988753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=6.8e-15  Score=115.40  Aligned_cols=210  Identities=20%  Similarity=0.245  Sum_probs=154.1

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC--------------------------------Cce----
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH--------------------------------GKV----   57 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~--------------------------------~~~----   57 (233)
                      ..+..|.+-|+.|.|+..|..|+|||.|..|.+||......                                +.+    
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            35789999999999999999999999999999998532110                                000    


Q ss_pred             --------eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee---c-C---CeeEEEECCCCC-
Q 026765           58 --------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---S-G---ENINITYKPDGT-  121 (233)
Q Consensus        58 --------~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~---~-~---~~~~~~~~~~~~-  121 (233)
                              ....+..|.++|..++..|..++-|.|++.|+.+.-.|++.+.....+..   . .   ....++..|... 
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence                    01123468899999999999999999999999999999988754333221   1 1   123467777554 


Q ss_pred             eEEEEcCCCcEEEEEcCCCeee------eeee-------cCceeeEE---------------------------------
Q 026765          122 HIAVGNRDDELTILDVRKFKPI------HRRK-------FGYEVNEI---------------------------------  155 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~------~~~~-------~~~~~~~~---------------------------------  155 (233)
                      .+++++.|...++||.+.....      ....       ....|+++                                 
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence            7889999988999886532111      0000       00011111                                 


Q ss_pred             -------------------------EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee
Q 026765          156 -------------------------AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       156 -------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s  210 (233)
                                               -|.|..+++++|+.-|.|.+|+-.+.+.+..+.+...-|+|+.-+|.-..||+.+
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG  455 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG  455 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence                                     2456667888999999999999988888888777666899999999999999999


Q ss_pred             CCCcEEEEecCCc
Q 026765          211 ADSLVSLWDISEM  223 (233)
Q Consensus       211 ~dg~v~iwd~~~~  223 (233)
                      -|.-||||-....
T Consensus       456 id~DVKIWTP~~~  468 (559)
T KOG1334|consen  456 IDHDVKIWTPLTA  468 (559)
T ss_pred             CccceeeecCCcc
Confidence            9999999987543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=3.5e-12  Score=97.19  Aligned_cols=184  Identities=15%  Similarity=0.278  Sum_probs=133.2

Q ss_pred             CCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-
Q 026765           32 GTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-  108 (233)
Q Consensus        32 ~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-  108 (233)
                      ..++|-.+.+.  .+++.+...+  ..++.+.+   ...|.++.++.+  + |+..-.+ .|.|||+++-+...+.... 
T Consensus        56 SSLvaiV~~~qpr~Lkv~~~Kk~--~~ICe~~f---pt~IL~VrmNr~--R-LvV~Lee-~IyIydI~~MklLhTI~t~~  126 (391)
T KOG2110|consen   56 SSLVAIVSIKQPRKLKVVHFKKK--TTICEIFF---PTSILAVRMNRK--R-LVVCLEE-SIYIYDIKDMKLLHTIETTP  126 (391)
T ss_pred             cceeEEEecCCCceEEEEEcccC--ceEEEEec---CCceEEEEEccc--e-EEEEEcc-cEEEEecccceeehhhhccC
Confidence            44555555443  4777776532  23444433   467888888642  3 4455544 4999999988877766543 


Q ss_pred             -CCeeEEEECC--CCCeEEEEc--CCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCe-EEEEecCCc
Q 026765          109 -GENINITYKP--DGTHIAVGN--RDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGT-VEVLTYPSL  181 (233)
Q Consensus       109 -~~~~~~~~~~--~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~  181 (233)
                       .+..-++++|  .+.+++.-+  ..|.+.+||+.+.+++..+. +..++.+++|+++|.+++++++.|+ |+++..+++
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence             2222345554  455887533  35889999999888877655 5678999999999999999999886 578899999


Q ss_pred             eeeeEEeeec--CceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          182 RPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       182 ~~~~~~~~~~--~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +.+..|.-..  ..|.+++|+|++++|++.|+.++|.||.+.+..
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            9888887443  457899999999999999999999999998653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=6.1e-12  Score=103.34  Aligned_cols=202  Identities=13%  Similarity=0.159  Sum_probs=126.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-   89 (233)
                      +.+..|...+...+|+|||++|+..+.+   ..|.+|++....   ..  .+......+....|+|++..++++...++ 
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~~--~l~~~~g~~~~~~~SpDG~~la~~~~~~g~  266 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---RE--QITNFEGLNGAPAWSPDGSKLAFVLSKDGN  266 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---EE--EccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence            4556677889999999999999877644   247777775422   11  22223334556899999877766666665 


Q ss_pred             -eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765           90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        90 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                       .|.+||+.++................|+||++.++..+. ++  .|.++|+.+.+.......+.......|+|+|+.++
T Consensus       267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLV  346 (430)
T ss_pred             ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence             577889988765432222233445789999998875543 33  46667776554322111122234568999999998


Q ss_pred             EEeCC-C--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC---CcEEEEecCC
Q 026765          166 LTTGN-G--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISE  222 (233)
Q Consensus       166 ~~~~~-~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d---g~v~iwd~~~  222 (233)
                      ..... +  .+.++|+.+++. ..+. +........|+|+|++++..+.+   ..+.+.+++.
T Consensus       347 ~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            77643 3  467778766543 2222 22222356899999998776654   3467777753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.4e-13  Score=100.76  Aligned_cols=202  Identities=18%  Similarity=0.336  Sum_probs=132.1

Q ss_pred             ccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCC----------CceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGH----------GKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        19 H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      ....|+|++|-|-+ +.|+.|+. +-|.+|..+....          ......+.+|| .+|+++.|++++.. +++++.
T Consensus       139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~  215 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASF  215 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE-Eeeccc
Confidence            46789999999965 56666664 6688998754221          11222345666 78999999998754 556554


Q ss_pred             -CCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-CeeeeeeecCceeeEEEECCCCCEE
Q 026765           88 -DKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        88 -d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                       |..|.|||..++.+....... +....+.|+||+.+++++.-|+..++|.... .....-......+....|+|.|.++
T Consensus       216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence             668999999998765544333 3344689999999999999999999996432 2221111223378889999999988


Q ss_pred             EEEeC-CCeEEEEecCC--ce-----eeeE------E------ee---ecCceeEEEECCCCCEEEEeeCCC--------
Q 026765          165 FLTTG-NGTVEVLTYPS--LR-----PLDT------V------VA---HTAGCYCIAIDPMGRYFAVGSADS--------  213 (233)
Q Consensus       165 ~~~~~-~~~v~~~~~~~--~~-----~~~~------~------~~---~~~~v~~i~~~p~~~~las~s~dg--------  213 (233)
                      +..+. ...++-..+..  ..     .++.      +      .+   -.+++.+++|+|.|.+||+--..+        
T Consensus       296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~  375 (445)
T KOG2139|consen  296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL  375 (445)
T ss_pred             EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence            76643 33333333221  10     0000      0      00   145678999999999999865443        


Q ss_pred             cEEEEecCCc
Q 026765          214 LVSLWDISEM  223 (233)
Q Consensus       214 ~v~iwd~~~~  223 (233)
                      .|.+||....
T Consensus       376 ~i~~fdtr~s  385 (445)
T KOG2139|consen  376 HISRFDTRKS  385 (445)
T ss_pred             hhhhhccccc
Confidence            3667776643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.1e-12  Score=109.51  Aligned_cols=205  Identities=13%  Similarity=0.209  Sum_probs=153.0

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC--C-
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--G-   99 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~-   99 (233)
                      .++.+++.|...+. -.+..+.+|.+..+. ..... ..-..|.-.+++.+++|.+ .++++|..||+|.+|.--.  . 
T Consensus       164 ~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~  240 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGI-VHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDD  240 (792)
T ss_pred             ccEEEcCCceEEEE-EEeeeEEEEEecccc-eeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccc
Confidence            46677777765544 346778888876533 11111 1112466778999999975 6889999999999995322  1 


Q ss_pred             --eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          100 --KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       100 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                        .+....-++.++.+++|+++|.+|++|+..+-+.+|.+++.++...-..+.++..+.++|++.+.++..+|+.+.+..
T Consensus       241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence              122222345678899999999999999999999999999887554455678999999999999999999999999998


Q ss_pred             cCCceeeeEEeee-----------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          178 YPSLRPLDTVVAH-----------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       178 ~~~~~~~~~~~~~-----------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ..+.+...++.+-           .+-.+.++++|.-+.++-.+..|.|.+||+-+.+-++.|+.
T Consensus       321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v  385 (792)
T KOG1963|consen  321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV  385 (792)
T ss_pred             ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE
Confidence            8666544433321           22245688999778889999999999999998888887754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=9.3e-14  Score=107.14  Aligned_cols=160  Identities=16%  Similarity=0.291  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-
Q 026765           70 DQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-  147 (233)
Q Consensus        70 ~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  147 (233)
                      ..++|++++ ..+++|+.||++|||+...-.. ......++++.++.|+|||+.|++.+.| ...||+.+++..+.... 
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            467888875 4789999999999999654332 2333456778889999999999999999 89999998875443322 


Q ss_pred             c--CceeeEEEECCCC---CEEEE--EeCCCeEEEEecCCce-----eeeEEeeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765          148 F--GYEVNEIAWNMTG---EMFFL--TTGNGTVEVLTYPSLR-----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (233)
Q Consensus       148 ~--~~~~~~~~~~~~~---~~~~~--~~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v  215 (233)
                      .  ......+.|..++   .+.+.  ....+.+..++.....     ...+.....+.|.+++.+++|+++|.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            1  1223455666555   33333  2344566665543211     122223344578999999999999999999999


Q ss_pred             EEEecCCcEEEEeeec
Q 026765          216 SLWDISEMLCVRTFTK  231 (233)
Q Consensus       216 ~iwd~~~~~~i~~~~~  231 (233)
                      -|++..++++++-+++
T Consensus       306 ai~~~~~lq~~~~vk~  321 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKE  321 (398)
T ss_pred             EEEEeceeeeeEeehh
Confidence            9999999998886654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.55  E-value=3.9e-13  Score=109.03  Aligned_cols=210  Identities=18%  Similarity=0.297  Sum_probs=142.5

Q ss_pred             eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCce--eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKV--KDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ..+.+|...|+.+.|+|.. .+|||||.|..||||.+...-...+  ..+.+.+....|-++.|+|....+++++ .-|.
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~-a~g~  151 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG-AHGS  151 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec-cCce
Confidence            4577999999999999965 5789999999999999863211111  1223333345688999999877777665 5689


Q ss_pred             EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-Ceeeeeeec--CceeeEEEECCCCCEEEE
Q 026765           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKF--GYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~  166 (233)
                      +.|||+.+++....+..+ ..+.+..|+.||..+++.+.|+.|+|||.+. .++++..+.  +..-..+.|--+-..+++
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlis  231 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIS  231 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhh
Confidence            999999998876655544 3456789999999999999999999999875 444444322  122334555443334444


Q ss_pred             EeC----CCeEEEEecCCc-eeeeEEeee-cCceeEEEECCCCCEEE-EeeCCCcEEEEecCCcE
Q 026765          167 TTG----NGTVEVLTYPSL-RPLDTVVAH-TAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML  224 (233)
Q Consensus       167 ~~~----~~~v~~~~~~~~-~~~~~~~~~-~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~~  224 (233)
                      .+-    -..+++||.+.. .+..++.-. ..+|.-=-|+||.++|. +|-.+.++..+.+.+..
T Consensus       232 TGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q  296 (1012)
T KOG1445|consen  232 TGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ  296 (1012)
T ss_pred             cccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence            332    367889987643 344444322 22344445889988765 45567888888887654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=5.7e-12  Score=94.37  Aligned_cols=201  Identities=16%  Similarity=0.289  Sum_probs=133.9

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC------CeEEEEE
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWD   95 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d------~~i~iwd   95 (233)
                      ....++|+.|...++.|- |.-.|||+.++......  .++....-.+..+-|-  ...+.+.||.+      ..+.|||
T Consensus         7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~--r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESAS--RQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhh--hccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence            445599999999887766 55579999876322111  1111111222233332  12333455544      5789999


Q ss_pred             CCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC-CCeeeeeeecCc---eeeEEEECCCCCEEEEE-eCC
Q 026765           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGY---EVNEIAWNMTGEMFFLT-TGN  170 (233)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~  170 (233)
                      =...+++.++.+..++.++.+.++  .|++.. .++|.+|... +.+.++......   ...+++-+.+...++.. -.-
T Consensus        82 D~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   82 DLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             cccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            777788888889999999998876  555444 4578999865 444444433221   22233323333334443 346


Q ss_pred             CeEEEEecCCcee--eeEEeeecCceeEEEECCCCCEEEEeeCCCc-EEEEecCCcEEEEeee
Q 026765          171 GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT  230 (233)
Q Consensus       171 ~~v~~~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg~-v~iwd~~~~~~i~~~~  230 (233)
                      |.+++.|+...+.  -..+.+|.+.|.|++++.+|..+||+|..|+ |||||..+|+.+++|.
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R  221 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR  221 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence            9999999865444  3567899999999999999999999999988 8999999999999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.54  E-value=5.9e-13  Score=99.66  Aligned_cols=197  Identities=15%  Similarity=0.239  Sum_probs=137.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..++..|...|+.|+|+|..+.|+||+.|+.-.||...... .......+..+..+++++.|+|.. +.+++|+.-+.|.
T Consensus        48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~-~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~is  125 (361)
T KOG1523|consen   48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-TWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLIS  125 (361)
T ss_pred             ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC-eeccceeEEEeccceeeEeecCcC-ceEEeccCccEEE
Confidence            45888999999999999999999999999999999874322 233445677789999999999985 6788999999999


Q ss_pred             EEECCCCee--ee---eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc-----CC-C------------eeeeee-ec
Q 026765           93 LWDARSGKC--SQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDV-----RK-F------------KPIHRR-KF  148 (233)
Q Consensus        93 iwd~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~-----~~-~------------~~~~~~-~~  148 (233)
                      ||-.+...-  +.   .......+.++.|+|++-.++.|+-|++.+++..     +. .            +..... ..
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~  205 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS  205 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence            987654321  00   1112234578999999999999999999999863     10 0            001111 11


Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      +.-+..+.|+++|+.++-.+.|..+.+-|....+ .......-.-+-.++.|-.. +.++.++.|
T Consensus       206 ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~  269 (361)
T KOG1523|consen  206 GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYD  269 (361)
T ss_pred             CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCCC
Confidence            2347789999999999999999999999875443 22222222244455555432 334444444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=7.7e-12  Score=102.90  Aligned_cols=207  Identities=13%  Similarity=0.093  Sum_probs=123.3

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeC-CCC--EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe-
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSV-DQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-   90 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~--v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~-   90 (233)
                      .+..+...+.+..|+|||++|+..+. ++.  |.+||+....   ..  .+..........+|+|++..++++.+.++. 
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~  286 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---RE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQP  286 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence            34445667789999999999887654 444  5566664321   11  122222334567999998777777777775 


Q ss_pred             -EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           91 -VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        91 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                       |.++|+.+++...............|+||+++++..+. ++  .+.++|+.+.+.......+.......|+|+|+.++.
T Consensus       287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        287 EIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence             66778877664433222233456889999998876543 33  466667765543221112222345689999999877


Q ss_pred             EeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-Cc--EEEEecCCcEEEEee
Q 026765          167 TTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SL--VSLWDISEMLCVRTF  229 (233)
Q Consensus       167 ~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~--v~iwd~~~~~~i~~~  229 (233)
                      ... ++  .+.+++..+++.. .+... ......+|+|+|++|+..+.+ +.  +.+++++ +...+.+
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l  432 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL  432 (448)
T ss_pred             EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence            654 34  4455666655432 22221 112245799999988765543 33  6777764 4444443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.54  E-value=1.9e-14  Score=119.49  Aligned_cols=205  Identities=18%  Similarity=0.242  Sum_probs=141.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ....||.+.|+.++.+..+.+++++|.|+.|++|.+....    ....+.||+++|++++|+|.     .+.+.||++++
T Consensus       226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~----pvsvLrghtgavtaiafsP~-----~sss~dgt~~~  296 (1113)
T KOG0644|consen  226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA----PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRI  296 (1113)
T ss_pred             ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc----hHHHHhccccceeeeccCcc-----ccCCCCCceEe
Confidence            4567999999999999999999999999999999986432    12247899999999999995     27789999999


Q ss_pred             EECC-CCeee--ee--eeecCCeeEEEECCCCCeEE-------------------------------------EEcCCCc
Q 026765           94 WDAR-SGKCS--QQ--AELSGENINITYKPDGTHIA-------------------------------------VGNRDDE  131 (233)
Q Consensus        94 wd~~-~~~~~--~~--~~~~~~~~~~~~~~~~~~l~-------------------------------------~~~~d~~  131 (233)
                      ||.+ ....-  ..  +........+.|...+..++                                     +.-.+-.
T Consensus       297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~  376 (1113)
T KOG0644|consen  297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR  376 (1113)
T ss_pred             ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE
Confidence            9987 11100  00  00001111112222222222                                     2223344


Q ss_pred             EEEEEcCCCeeeeee-ecCceeeEEEECCCCCEEE-EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765          132 LTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFF-LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       132 i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~  209 (233)
                      +++|++..+...+.. -+..++..+.+||-...++ .++.||...|||.-.+.+++.+......+..-+||++|+.++..
T Consensus       377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence            566666665555442 2345677788888766554 56789999999998887776654334456677999999999998


Q ss_pred             eCCCcEEEEecCCcEEEE
Q 026765          210 SADSLVSLWDISEMLCVR  227 (233)
Q Consensus       210 s~dg~v~iwd~~~~~~i~  227 (233)
                      ..-|.+.|....+++.++
T Consensus       457 d~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  457 DDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             CCCCceEEeccCCCcccc
Confidence            888999999988776543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.8e-12  Score=98.72  Aligned_cols=183  Identities=15%  Similarity=0.250  Sum_probs=130.5

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      +-.+..++|++.=..+|++..|-+||+|+-+....   .  .++ .....|.+++|-|.+...|+.|+.. -|.+|....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t--~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~  171 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---T--KLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSR  171 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC---c--eecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCc
Confidence            34577889999777889999999999998654211   1  222 2346799999999988888777765 488997642


Q ss_pred             C----e--------eeeeeee--cCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCC
Q 026765           99 G----K--------CSQQAEL--SGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGE  162 (233)
Q Consensus        99 ~----~--------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~  162 (233)
                      .    +        +.+.+..  +..+..++|.+||..+++++. |..|.|||..+...+..... ...+.-+.|+||+.
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence            2    1        0111111  234567999999999998875 46799999988766554432 34577899999999


Q ss_pred             EEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765          163 MFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~  209 (233)
                      .+.++.-|+..++|+.. +....+...+ .+.|....|+|+|++|.-.
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             EEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEE
Confidence            99999999999999653 3333333333 3488899999999876543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.9e-12  Score=99.70  Aligned_cols=197  Identities=17%  Similarity=0.210  Sum_probs=138.8

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC---cEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .|...|.|++|+..+..+.||+.+++|...|+++..     .+....|.+   .|+.+.-+|.+ +.+++.+.++.|.+|
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q-----si~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ-----SIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI  176 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccce-----eeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence            467899999999999999999999999999997532     122334544   89999999985 678899999999999


Q ss_pred             ECCCCeeee----eeeecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCee-eeeeec-------CceeeEEEECCCC
Q 026765           95 DARSGKCSQ----QAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKP-IHRRKF-------GYEVNEIAWNMTG  161 (233)
Q Consensus        95 d~~~~~~~~----~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~-------~~~~~~~~~~~~~  161 (233)
                      |.+..+...    ..........+.|+|. ...|++....+.+.+||.+.... +.++..       ..+...+.|+++|
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            998765221    1122334456888885 45677888889999999876432 211111       1234678999999


Q ss_pred             CEEEEEeCCCeEEEEecCCcee-eeEEeeecC-------ceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTA-------GCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~-------~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +.+++.-....-.+||+-+.++ +.++ .|..       .+.++.|--+ .-+++||.+=.|.+|.+..
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence            9988776665666677655333 2222 2222       2445666543 4599999999999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.52  E-value=3.7e-13  Score=107.10  Aligned_cols=197  Identities=13%  Similarity=0.181  Sum_probs=131.2

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEE-EEEEc------CCCCCEEEEEeCCCe
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD-QLCWD------PKHADLIATASGDKT   90 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~-~~~~~------~~~~~~l~sg~~d~~   90 (233)
                      .|...|.|+.|......+.+++.+..++-|++........   .++  .+.+. .+-..      ..+...++.++.||.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~---~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVA---KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhh---hCC--cccCCccccccccccCCCCCcceEEEEcCCce
Confidence            6888888999987777776666555555566654332211   111  01110 01000      112345677889999


Q ss_pred             EEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765           91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      +.+-+-. ++...... +.+.+.+-.|+|+|.-+++.++||.|++|.-...-.....+.+.++.+++|.|+.+.++... 
T Consensus        87 f~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-  164 (737)
T KOG1524|consen   87 FVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-  164 (737)
T ss_pred             EEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence            9887643 23222222 23445567899999999999999999999843221111233456899999999988766543 


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .+.+.+-.+.....+....+|++-|.+++|+|.++.+++|++|-..+|||..
T Consensus       165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            3456665555555555678899999999999999999999999999999975

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=5.1e-13  Score=97.65  Aligned_cols=160  Identities=14%  Similarity=0.242  Sum_probs=118.9

Q ss_pred             CccccEEEEEECcC-CC--EEEEEeCCCCEEEEecccCCC------CceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           18 GHKKKVHSVAWNCT-GT--KLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        18 ~H~~~V~~~~~~~~-~~--~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      +..+.|+|..+..+ ++  .|+.|-.+|.|.+||++.+..      ..........|..+|.++.+.+.... =++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcc
Confidence            45778888887553 33  356667899999999976421      00111234569999999999875433 3588889


Q ss_pred             CeEEEEECCCC--eee--eeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCC
Q 026765           89 KTVRLWDARSG--KCS--QQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE  162 (233)
Q Consensus        89 ~~i~iwd~~~~--~~~--~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  162 (233)
                      ..+..|++...  .+.  .+.....+ +..+...||++.+++++.|+.|++|.-++.+++-..+ +...+++++|+|+.+
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence            99999988643  221  12223322 3458889999999999999999999999988876655 456799999999999


Q ss_pred             EEEEEeCCCeEEEEec
Q 026765          163 MFFLTTGNGTVEVLTY  178 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~  178 (233)
                      .+++++.|+.|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            9999999999999985

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=3.3e-12  Score=102.45  Aligned_cols=211  Identities=15%  Similarity=0.176  Sum_probs=145.1

Q ss_pred             CccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCC--------Cceee------------------EEEec----C-
Q 026765           18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGH--------GKVKD------------------IELRG----H-   65 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~--------~~~~~------------------~~~~~----h-   65 (233)
                      +|...-+.+..+|||+++ |||-+--.|++||+..-..        ..+..                  +++..    | 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            588999999999999985 6777899999999753110        00000                  01100    0 


Q ss_pred             ----cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC
Q 026765           66 ----ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (233)
Q Consensus        66 ----~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  140 (233)
                          ...-.+++++.....+++ ++....|.=+++..|+....+... +....+..++-...|++|+.+|.+..||.+..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                011233444433344554 444455666789999887777665 55566888888889999999999999999876


Q ss_pred             eeeeeeecC------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec--CceeEEEECCCCC--
Q 026765          141 KPIHRRKFG------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT--AGCYCIAIDPMGR--  204 (233)
Q Consensus       141 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~--  204 (233)
                      ..+..+...            ..++.+.|+-+|=.+++|+.+|.+.+||++..+++.. ..|.  -+|..+.|.+.+.  
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCc
Confidence            554433322            2488999998888899999999999999998887643 3344  4678899987643  


Q ss_pred             EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          205 YFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       205 ~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+++. ....++|||-.+|+.+..+..
T Consensus       287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             eEEec-chHHhhhcccccCCceeeccc
Confidence            34433 446799999999887665443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=7.9e-14  Score=111.17  Aligned_cols=161  Identities=22%  Similarity=0.399  Sum_probs=117.0

Q ss_pred             EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee--cCCeeEEEECC--CCCeEEEEcCCCcEEEE
Q 026765           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITYKP--DGTHIAVGNRDDELTIL  135 (233)
Q Consensus        60 ~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~d~~i~i~  135 (233)
                      .++.||+++|++++|+.+| .+|+||+.|-.+.|||.-..+....+..  ...++++.|-|  +.+.+++|..|..|+++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            4688999999999999875 7899999999999999877666555432  24567888877  45678899999999999


Q ss_pred             EcCCCee----------eeeee-cCceeeEEEECCCC-CEEEEEeCCCeEEEEecCCceeee----------EEeeecCc
Q 026765          136 DVRKFKP----------IHRRK-FGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRPLD----------TVVAHTAG  193 (233)
Q Consensus       136 d~~~~~~----------~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~  193 (233)
                      |+...+.          ..... +...+-.++-.|++ +.+.++++||+++-+|++......          .+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9864211          00000 11235556667777 788999999999999997532111          11111123


Q ss_pred             eeEEEECCCCC-EEEEeeCCCcEEEEecC
Q 026765          194 CYCIAIDPMGR-YFAVGSADSLVSLWDIS  221 (233)
Q Consensus       194 v~~i~~~p~~~-~las~s~dg~v~iwd~~  221 (233)
                      ..|+.++|... +||.|+.|-.+++||.+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            56899999775 68999999999999953

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.7e-11  Score=100.40  Aligned_cols=177  Identities=14%  Similarity=0.202  Sum_probs=116.1

Q ss_pred             CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC
Q 026765           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (233)
Q Consensus        43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (233)
                      .+.+||.+...   .  ..+..+...+...+|+|++..++++..  .+..+.+||+.+++........+......|+|||
T Consensus       180 ~l~~~d~dg~~---~--~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        180 ELRVSDYDGYN---Q--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eEEEEcCCCCC---C--EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            57777765321   1  123345678899999999866554432  3457899999887654443344445568999999


Q ss_pred             CeEEEE-cCCC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC-CeEEEE--ecCCceeeeEEeeecCce
Q 026765          121 THIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-GTVEVL--TYPSLRPLDTVVAHTAGC  194 (233)
Q Consensus       121 ~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~~~~~~~~~~v  194 (233)
                      +.|+.. ..++  .|.+||+.+.+..........+....|+|+|+.++..+.+ +...+|  +...++. ..+..+....
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~  333 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN  333 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence            988854 3344  4888998776543332233356788999999988776653 444455  5554433 3344344445


Q ss_pred             eEEEECCCCCEEEEeeCC---CcEEEEecCCcEE
Q 026765          195 YCIAIDPMGRYFAVGSAD---SLVSLWDISEMLC  225 (233)
Q Consensus       195 ~~i~~~p~~~~las~s~d---g~v~iwd~~~~~~  225 (233)
                      ....|+|+|++|+..+.+   ..|.+||+.+++.
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            678999999998876644   3588899987753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.2e-11  Score=99.77  Aligned_cols=164  Identities=17%  Similarity=0.189  Sum_probs=104.9

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCcEEEEE--
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILD--  136 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d--  136 (233)
                      +..+...+.+.+|+|++..++++...+  ..|.+||+.+++........+......|+|||+.|+. ...++...+|.  
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            445677889999999876554443222  4699999988876544334455567899999998874 56677666665  


Q ss_pred             cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CCeEEEEec--CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      +...................|+|+|+.++..+. ++...+|..  ...+. ..+..+.......+|+|+|++|+..+.++
T Consensus       271 ~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        271 ADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             CCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            433322111111223456789999998876553 456666654  33322 22222223344678999999998777654


Q ss_pred             ---cEEEEecCCcEEE
Q 026765          214 ---LVSLWDISEMLCV  226 (233)
Q Consensus       214 ---~v~iwd~~~~~~i  226 (233)
                         .|.+||+..++..
T Consensus       350 g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        350 GAFKLYVQDLATGQVT  365 (427)
T ss_pred             CcEEEEEEECCCCCeE
Confidence               5999999877643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=101.73  Aligned_cols=178  Identities=16%  Similarity=0.211  Sum_probs=114.9

Q ss_pred             CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeecCCeeEEEECC
Q 026765           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKP  118 (233)
Q Consensus        42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  118 (233)
                      ..|.+||.....   .  ..+..+...+....|+|++..++ ..+.   +..|.+||+.+++........+......|+|
T Consensus       184 ~~l~i~D~~g~~---~--~~lt~~~~~v~~p~wSpDg~~la-~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDGYN---P--QTILRSAEPILSPAWSPDGKKLA-YVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCCCC---c--eEeecCCCccccccCCCCCCEEE-EEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence            357788864321   1  23445677889999999876554 4442   3469999998876544333344455689999


Q ss_pred             CCCeEEE-EcCCC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CCe--EEEEecCCceeeeEEeeecC
Q 026765          119 DGTHIAV-GNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGT--VEVLTYPSLRPLDTVVAHTA  192 (233)
Q Consensus       119 ~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~~~~~~~~~~~~~~~~~~  192 (233)
                      ||+.++. .+.++  .|.+||+.+.+...............|+|+|+.++..+. +|.  +.+++..+++. ..+..+..
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~  336 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN  336 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC
Confidence            9998764 34444  588899877654322222223456799999998887653 444  55556555432 23333333


Q ss_pred             ceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEE
Q 026765          193 GCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCV  226 (233)
Q Consensus       193 ~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i  226 (233)
                      .....+|+|+|++|+..+.++   .|.+||+..+...
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            445689999999988765443   5999999877543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=2.2e-10  Score=91.65  Aligned_cols=190  Identities=20%  Similarity=0.261  Sum_probs=128.7

Q ss_pred             EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEE
Q 026765           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI  114 (233)
Q Consensus        35 l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  114 (233)
                      +++-..+++|.|.|..+.  ..+.  +++........+.++|++. +++.++.|+.|.++|+.+.+...+.........+
T Consensus         9 ~V~~~~~~~v~viD~~t~--~~~~--~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i   83 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATN--KVVA--RIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI   83 (369)
T ss_dssp             EEEEGGGTEEEEEETTT---SEEE--EEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred             EEEecCCCEEEEEECCCC--eEEE--EEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence            355667899999987542  2222  3443334445577898764 5667789999999999999988888888888899


Q ss_pred             EECCCCCeEEEEc-CCCcEEEEEcCCCeeeeeeecC--------ceeeEEEECCCCCEEEEEeC-CCeEEEEecCCceee
Q 026765          115 TYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFG--------YEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPL  184 (233)
Q Consensus       115 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  184 (233)
                      ++++||++++++. ..+.+.++|.++.+++......        ..+..+.-++....+++... .+.+.+.|+...+..
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            9999999998776 5789999999998888766543        23456667788886766655 588888888665433


Q ss_pred             e-EEeeecCceeEEEECCCCCEEEEe-eCCCcEEEEecCCcEEEEee
Q 026765          185 D-TVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       185 ~-~~~~~~~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~~~~i~~~  229 (233)
                      . ....-........|+|+++|++.+ ..+..|-++|.+++..+..+
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            2 222334456778999999987654 45678999999998876654

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.47  E-value=4.4e-12  Score=94.09  Aligned_cols=200  Identities=21%  Similarity=0.204  Sum_probs=135.6

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-  100 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-  100 (233)
                      ..++.|++.+..++++..+|.+.+=+..   ...++. ..+++|.-..--+.|+...++++++|+.|+.+..||+|..+ 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t---~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYET---EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecc---eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            4477888999999999999998843321   112211 25678988888888988888999999999999999999432 


Q ss_pred             eeee--eeecCCeeEEEEC-CCCCeEEEEcCCCcEEEEEcCC-CeeeeeeecCceeeEEEECCCCC-EEEEEeCCCeEEE
Q 026765          101 CSQQ--AELSGENINITYK-PDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEV  175 (233)
Q Consensus       101 ~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~  175 (233)
                      ++..  ......+.++.-+ |.+.+|++|+.|..|++||.|+ .+++...+.+..|..+.++|... .+++++.-.-.++
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki  280 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKI  280 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceE
Confidence            3222  1123344555544 4678999999999999999994 67777666677889999988654 2223333333444


Q ss_pred             EecCC--ce---eeeEEeeecCceeEEEECCCCCEEEEee-CCCcEE-EEecCCcEE
Q 026765          176 LTYPS--LR---PLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVS-LWDISEMLC  225 (233)
Q Consensus       176 ~~~~~--~~---~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~-iwd~~~~~~  225 (233)
                      .+...  .+   .......|.+-++.-.|+.....|||++ .|+.++ +|-..++++
T Consensus       281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence            44432  22   2233445776666677766566899987 677755 886665543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=7.3e-11  Score=97.06  Aligned_cols=175  Identities=13%  Similarity=0.163  Sum_probs=114.5

Q ss_pred             CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC
Q 026765           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (233)
Q Consensus        43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (233)
                      .|.+||.+..   ..  ..+..|...+...+|+|++..++++..  .+..|.+||+.+++........+......|+|||
T Consensus       183 ~l~~~d~dg~---~~--~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        183 RLAIMDQDGA---NV--RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEEECCCCC---Cc--EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            5666665421   11  235567789999999998765544432  3468999999888654433344555678999999


Q ss_pred             CeEE-EEcCCCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCce
Q 026765          121 THIA-VGNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGC  194 (233)
Q Consensus       121 ~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v  194 (233)
                      +.|+ +...++.  |.+||+.+.+...............|+|+|+.++..+. +|  .+.+++....+. ..+..+...+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~  336 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRY  336 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcc
Confidence            9876 4444544  67778876544322222233556899999998887653 33  577777655433 3344344556


Q ss_pred             eEEEECCCCCEEEEeeCC---CcEEEEecCCc
Q 026765          195 YCIAIDPMGRYFAVGSAD---SLVSLWDISEM  223 (233)
Q Consensus       195 ~~i~~~p~~~~las~s~d---g~v~iwd~~~~  223 (233)
                      ....|+|+|++|+..+.+   ..|.+||+..+
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            678899999999877654   35888887544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=3e-13  Score=108.39  Aligned_cols=216  Identities=20%  Similarity=0.317  Sum_probs=152.0

Q ss_pred             CCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc---eeeEEEecCcCcEEEEEEcCCCCCE
Q 026765            5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADL   81 (233)
Q Consensus         5 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~   81 (233)
                      +..|+......|.||...|++++--...+-++|++.|++||+|.+.+...+.   .++..+..|+.+|.++.|-.+. +.
T Consensus       720 ~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~  798 (1034)
T KOG4190|consen  720 NLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RS  798 (1034)
T ss_pred             ccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ce
Confidence            4457777777899999999998765566788999999999999998765443   2566788999999999997653 34


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeee---ecCCeeEEEECC--CCCeEEE-EcCCCcEEEEEcCCCeeeeeeecC------
Q 026765           82 IATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP--DGTHIAV-GNRDDELTILDVRKFKPIHRRKFG------  149 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~--~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~------  149 (233)
                      +  ++.|+-|++||---++......   -++....+.-.|  +...++. ++...+++++|.+..+.+...+..      
T Consensus       799 i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  799 I--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             e--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            4  4578999999976555433221   122222232223  3344444 467889999999987766555432      


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEE-EecCCcE
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL-WDISEML  224 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~i-wd~~~~~  224 (233)
                      ..+.+++..+.|+.++++-.+|.+.+.|.++++.+.......-....++ -|..+.|+....|..+.| |-..++.
T Consensus       877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            2367888999999999999999999999999887765544332222222 356667777777777777 7666553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=2.1e-09  Score=85.84  Aligned_cols=201  Identities=18%  Similarity=0.286  Sum_probs=133.4

Q ss_pred             EEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeE--EE--e--------cCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           23 VHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDI--EL--R--------GHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~--~~--~--------~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      -..++++|++++|+++.+ +++|.++++....  .+...  .+  .        .......++.++|++..++++--...
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g--~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG--SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTS--EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCc--ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            346889999999988875 8999999997532  22111  11  1        11245778999999776666666667


Q ss_pred             eEEEEECCCCe--eee--e--eeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcC--CCe--eeeeeec---C----ce
Q 026765           90 TVRLWDARSGK--CSQ--Q--AELSGENINITYKPDGTHIAVGN-RDDELTILDVR--KFK--PIHRRKF---G----YE  151 (233)
Q Consensus        90 ~i~iwd~~~~~--~~~--~--~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~---~----~~  151 (233)
                      .|.+|++....  ...  .  ......+.-+.|+|+++++.+.. .++.|.++++.  ...  .+.....   .    ..
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            89999987654  322  1  12234456799999999886554 56789999887  322  2222221   1    14


Q ss_pred             eeEEEECCCCCEEEEEe-CCCeEEEEecCC----ceeeeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEec--CCc
Q 026765          152 VNEIAWNMTGEMFFLTT-GNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SEM  223 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~--~~~  223 (233)
                      ...+.++|+|+++.++. ..+.|.+|+++.    .+.+..+.........++++|+|++|+++. .++.|.+|++  ++|
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence            66789999999988775 578899999832    244444444455678999999999998877 5678999987  455


Q ss_pred             EE
Q 026765          224 LC  225 (233)
Q Consensus       224 ~~  225 (233)
                      ..
T Consensus       327 ~l  328 (345)
T PF10282_consen  327 KL  328 (345)
T ss_dssp             EE
T ss_pred             cE
Confidence            54

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=2e-11  Score=97.37  Aligned_cols=147  Identities=20%  Similarity=0.335  Sum_probs=107.6

Q ss_pred             EEEEeCCCeEEEEECCCCeeeeee-----eecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCC---------------
Q 026765           82 IATASGDKTVRLWDARSGKCSQQA-----ELSGENINITYKPDG-THIAVGNRDDELTILDVRKF---------------  140 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~---------------  140 (233)
                      ++.|-.-|.+.+.|....+....+     .....+.++.|-|.+ ..+++...+|.+.+||..-.               
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~  267 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD  267 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence            346777788888886553222111     123456788887754 45667788999999975310               


Q ss_pred             -------------eeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE
Q 026765          141 -------------KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF  206 (233)
Q Consensus       141 -------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l  206 (233)
                                   .++.... ....++..+|++||+++++.+.||.++|+++.+.+....+...-+...|++|||||+||
T Consensus       268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence                         0000000 01246788999999999999999999999999877766655566778999999999999


Q ss_pred             EEeeCCCcEEEEecCCcEEEEe
Q 026765          207 AVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       207 as~s~dg~v~iwd~~~~~~i~~  228 (233)
                      ++|++|-.|.||.+.+++.|..
T Consensus       348 vtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             EecCCcceEEEEEeccceEEEe
Confidence            9999999999999999988765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.5e-10  Score=92.56  Aligned_cols=211  Identities=11%  Similarity=0.080  Sum_probs=123.5

Q ss_pred             eeeeCccccEEEEEECcCCCEE---EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765           14 REYTGHKKKVHSVAWNCTGTKL---ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l---~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-   89 (233)
                      +.++.....+..-.|+|||+.+   ++...++.-.||-.+..+....   .+...........|+|++..++++...++ 
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~  254 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---KILALQGNQLMPTFSPRKKLLAFISDRYGN  254 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence            3344455667788999999752   2444556655664433222211   22223344556799999877766654333 


Q ss_pred             ---eEEEEECCCC---eeeeeeeec-CCeeEEEECCCCCeEEEEc-CCCcEEEE--EcCC-Ceeeeeee-cCceeeEEEE
Q 026765           90 ---TVRLWDARSG---KCSQQAELS-GENINITYKPDGTHIAVGN-RDDELTIL--DVRK-FKPIHRRK-FGYEVNEIAW  157 (233)
Q Consensus        90 ---~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~d~~i~i~--d~~~-~~~~~~~~-~~~~~~~~~~  157 (233)
                         .+.+|++..+   ...+..... .......|+|||+.|+..+ .++...+|  ++.. ........ ....+....|
T Consensus       255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w  334 (428)
T PRK01029        255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW  334 (428)
T ss_pred             cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence               3445776643   222222111 2234579999999887554 45554555  4432 11122221 2234567889


Q ss_pred             CCCCCEEEEEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC---CCcEEEEecCCcEEEEe
Q 026765          158 NMTGEMFFLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVRT  228 (233)
Q Consensus       158 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~---dg~v~iwd~~~~~~i~~  228 (233)
                      +|+|+.++....+   ..+.+||..+++.. .+......+....|+|+|++|+..+.   ...|.++|+..++..+.
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            9999998876542   46888888776543 33333345677899999998775433   35688999987765433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=2.3e-10  Score=93.70  Aligned_cols=163  Identities=15%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCC--cEEEEE
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDD--ELTILD  136 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~i~d  136 (233)
                      +..+...+...+|+|++..++++...+  ..|.+||+.+++........+....++|+||++.|+. ...++  .|.+||
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            445666788899999876554443222  4799999988765444444445566899999998764 34443  588888


Q ss_pred             cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      +.+.................|+++++.++..+. .+  .+.+++....+. ..+..+...+....|+|+|++|+.++.++
T Consensus       265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccC
Confidence            876543322222222345689999998876654 33  567777665443 34444555667889999999999888776


Q ss_pred             ---cEEEEecCCcEE
Q 026765          214 ---LVSLWDISEMLC  225 (233)
Q Consensus       214 ---~v~iwd~~~~~~  225 (233)
                         .|.+||+..+..
T Consensus       344 ~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       344 GGFNIAVMDLDGGGE  358 (417)
T ss_pred             CceEEEEEeCCCCCe
Confidence               789999887543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=1.5e-11  Score=93.15  Aligned_cols=213  Identities=16%  Similarity=0.281  Sum_probs=134.3

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce-eeEEEecC------------cCcEEEEEEcCCCC-CEEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGH------------ADSVDQLCWDPKHA-DLIAT   84 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~-~~~~~~~h------------~~~v~~~~~~~~~~-~~l~s   84 (233)
                      ....|.++.|+..|++||||+.+|.|.++.-+....+.. -..++..|            ...|..+.|.+++. ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            466799999999999999999999999996543211100 01122223            23577888876542 34455


Q ss_pred             EeCCCeEEEEECCCCeeee---------------eeee----------------------cCCeeEEEECCCCCeEEEEc
Q 026765           85 ASGDKTVRLWDARSGKCSQ---------------QAEL----------------------SGENINITYKPDGTHIAVGN  127 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~---------------~~~~----------------------~~~~~~~~~~~~~~~l~~~~  127 (233)
                      ...|++|++|.++......               .+..                      .-.+.++.+..|...++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            6789999999886432111               0000                      0012246666676666544 


Q ss_pred             CCCcEEEEEcCCCe----eeeeeecC-----ceeeEEEECCCC-CEEEEEeCCCeEEEEecCCceeee----EE------
Q 026765          128 RDDELTILDVRKFK----PIHRRKFG-----YEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRPLD----TV------  187 (233)
Q Consensus       128 ~d~~i~i~d~~~~~----~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~----~~------  187 (233)
                      .|-.|.+|+++-..    .+-..+..     .-+++..|+|.. +.++.++..|+|++.|.+......    .+      
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            46789999986422    22111111     236778888864 667888899999999987321110    01      


Q ss_pred             ------eeecCceeEEEECCCCCEEEEeeCCCcEEEEec-CCcEEEEeeecCC
Q 026765          188 ------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRTFTKLE  233 (233)
Q Consensus       188 ------~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~-~~~~~i~~~~~~~  233 (233)
                            ..--..|..+.|+++|+|+++=+ =-+|+|||+ -+..++.+|+.|+
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehH
Confidence                  11123467899999999988543 268999999 5777888888663

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.39  E-value=1.3e-09  Score=81.94  Aligned_cols=157  Identities=15%  Similarity=0.219  Sum_probs=109.1

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEE-EEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI-ATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~sg~~d~~i~iwd~~   97 (233)
                      .+.+|.+|.+.++  +++..- ++.|.||..... .......+.........+++-+.+ ..+| +-|-.-|+|+|-|+.
T Consensus        93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~-k~~LafPg~k~GqvQi~dL~  167 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSN-KSLLAFPGFKTGQVQIVDLA  167 (346)
T ss_pred             eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCC-ceEEEcCCCccceEEEEEhh
Confidence            5667777777653  444433 688999987532 222333333333334433333222 2233 334556899999987


Q ss_pred             CCee---eeeeeecCCeeEEEECCCCCeEEEEcCCCc-EEEEEcCCCeeeeeeecC---ceeeEEEECCCCCEEEEEeCC
Q 026765           98 SGKC---SQQAELSGENINITYKPDGTHIAVGNRDDE-LTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        98 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ..+.   .....+...+.+++.+.+|..+|+++..|+ |+|||.++++.+....-+   ..+.+++|+|+..++++++..
T Consensus       168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  168 STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence            6554   223334566778999999999999999987 799999999888776543   469999999999999999999


Q ss_pred             CeEEEEecCC
Q 026765          171 GTVEVLTYPS  180 (233)
Q Consensus       171 ~~v~~~~~~~  180 (233)
                      |+++++.++.
T Consensus       248 gTlHiF~l~~  257 (346)
T KOG2111|consen  248 GTLHIFSLRD  257 (346)
T ss_pred             CeEEEEEeec
Confidence            9999998754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.37  E-value=2.7e-09  Score=85.49  Aligned_cols=211  Identities=17%  Similarity=0.207  Sum_probs=126.9

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .++....+.-..+.|+|||+++..++.|+.|.++|+....  .+..  ++. ......+++++++..++++...++.+.+
T Consensus        30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~--i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVAT--IKV-GGNPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEE--EE--SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEE--Eec-CCCcceEEEcCCCCEEEEEecCCCceeE
Confidence            3454333333457899999999999999999999997532  2332  322 2346779999987666566667899999


Q ss_pred             EECCCCeeeeeeeecC--------CeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeee--eeeecCceeeEEEECCCCC
Q 026765           94 WDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGE  162 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~  162 (233)
                      +|.++.+........+        .+..+..+|....++..-. .+.+.+.|....+..  .....+.......|+++++
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR  184 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence            9999887766554321        2334666777775555544 488888887665433  2333444566789999999


Q ss_pred             EEEEE-eCCCeEEEEecCCceeeeEE------------------------------------------------------
Q 026765          163 MFFLT-TGNGTVEVLTYPSLRPLDTV------------------------------------------------------  187 (233)
Q Consensus       163 ~~~~~-~~~~~v~~~~~~~~~~~~~~------------------------------------------------------  187 (233)
                      +++++ ..++.+.++|..+.+....+                                                      
T Consensus       185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~  264 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT  264 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred             eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence            88765 45567777776554322111                                                      


Q ss_pred             -eeecCceeEEEECCCCCEEEEe----eCCCcEEEEecCCcEEEEeee
Q 026765          188 -VAHTAGCYCIAIDPMGRYFAVG----SADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       188 -~~~~~~v~~i~~~p~~~~las~----s~dg~v~iwd~~~~~~i~~~~  230 (233)
                       .....+ .-++.+|+++++...    ...+.|.|+|.++.+.++++.
T Consensus       265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~  311 (369)
T PF02239_consen  265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT  311 (369)
T ss_dssp             EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred             EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence             111112 346779999999887    455899999999998888764

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.36  E-value=5.1e-11  Score=103.12  Aligned_cols=170  Identities=18%  Similarity=0.280  Sum_probs=120.4

Q ss_pred             eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-------eeeeeee-ecCCeeEEEECCCCCeEEEEcCCC
Q 026765           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDD  130 (233)
Q Consensus        59 ~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~  130 (233)
                      ...+..|...+..++.++..+.+++|||.||+|++||.+.-       ++..+.. .......+...+.++.+|+++.||
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            34566788889999998877789999999999999998642       1122222 234556678889999999999999


Q ss_pred             cEEEEEcCCCee-----eeeee-----cCceeeEEEECCC-C-CEEEEEeCCCeEEEEecCCceeeeEE--eeecCceeE
Q 026765          131 ELTILDVRKFKP-----IHRRK-----FGYEVNEIAWNMT-G-EMFFLTTGNGTVEVLTYPSLRPLDTV--VAHTAGCYC  196 (233)
Q Consensus       131 ~i~i~d~~~~~~-----~~~~~-----~~~~~~~~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~  196 (233)
                      .+.+.++...+.     .....     .+.-+...++... . ..++.+...+.+..||.+.......+  ....+.|++
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence            999998865211     11111     1112222233222 2 36778888999999998765443332  234567999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       197 i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      ++.+|.+.++++|+..|.+.+||++=+.++..
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS 1232 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeec
Confidence            99999999999999999999999987766654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=7.1e-10  Score=88.99  Aligned_cols=198  Identities=21%  Similarity=0.310  Sum_probs=136.1

Q ss_pred             CccccEEEEEECcCC--CEEEE-----EeCCCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-
Q 026765           18 GHKKKVHSVAWNCTG--TKLAS-----GSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHADLIATASGD-   88 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~--~~l~s-----~~~D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-   88 (233)
                      -|...|+.+.++|..  ..+|+     +|.-..||||......... +....+. ..+. ..+.|++.+..+|+-++.| 
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEee
Confidence            367788999999863  34443     5667789999875222111 1111111 1122 3467887776666544432 


Q ss_pred             ----------CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEE
Q 026765           89 ----------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (233)
Q Consensus        89 ----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  156 (233)
                                .++.+.++....+...+.-.+++.++.|+|+++.++++.  .=.++.|+|++. .++..... .+-+.+.
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~e-gpRN~~~  318 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPE-GPRNTAF  318 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCC-CCccceE
Confidence                      467777877555556666678899999999998876543  446799999874 44444333 3678899


Q ss_pred             ECCCCCEEEEEeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC------CCcEEEEecC
Q 026765          157 WNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA------DSLVSLWDIS  221 (233)
Q Consensus       157 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~------dg~v~iwd~~  221 (233)
                      |+|.|++++.++=   .|.+.+||..+.+.+..+..-.  .+-+.|+|||++|.|+..      |+.++||+..
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            9999999987753   5999999999888777765443  356789999999988773      6889999986

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.35  E-value=1.8e-10  Score=92.74  Aligned_cols=155  Identities=18%  Similarity=0.188  Sum_probs=124.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeeeee----cCCeeEEEE------C--------------CCCCeEEEEcCCCcE
Q 026765           77 KHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITY------K--------------PDGTHIAVGNRDDEL  132 (233)
Q Consensus        77 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~------~--------------~~~~~l~~~~~d~~i  132 (233)
                      ....++|....||.+++||...++..+.+..    .+...+..|      +              -+-..++.|...|.+
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3456788889999999999988876555443    122222211      1              233467889999999


Q ss_pred             EEEEcCCCeeeeeee---cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765          133 TILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       133 ~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~  209 (233)
                      .+|++..++......   +...++++.++.+-..+.++++|+.+..|+..+.+.+.........+.++.++||+..|++|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999998887765554   33468899999888999999999999999999888888888888889999999999999998


Q ss_pred             eCCCcEEEEecCCcEEEEeeecCC
Q 026765          210 SADSLVSLWDISEMLCVRTFTKLE  233 (233)
Q Consensus       210 s~dg~v~iwd~~~~~~i~~~~~~~  233 (233)
                      +  +.|++||+++++.+.+|.+|.
T Consensus       163 s--~~ik~~~~~~kevv~~ftgh~  184 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFTGHG  184 (541)
T ss_pred             c--ceEEEEEccCceEEEEecCCC
Confidence            8  679999999999999999873

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=8.1e-11  Score=94.67  Aligned_cols=194  Identities=15%  Similarity=0.306  Sum_probs=138.6

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      ..++++.-.--|..++....|.-.+++.+   +... .+.--..++.++..++.. .+|++|+.+|.|..||.+......
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~-P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~  211 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLN-PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVG  211 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEcccc---cccc-ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhhe
Confidence            34455443333444554455555555432   2111 233344788899998875 588899999999999998876544


Q ss_pred             eeeecC------------CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEECCCCC-EEEEEe
Q 026765          104 QAELSG------------ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGE-MFFLTT  168 (233)
Q Consensus       104 ~~~~~~------------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~  168 (233)
                      .+....            .+.++.|+.+|-.+++|+.+|.+.|||++..+++....+.  .++..+.|.+.+. --++..
T Consensus       212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence            433222            2567899999999999999999999999998888666554  5677888866543 345555


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ....+++||..+++++..+..- ..++.+++-|++.++.+|-.++.+..|=+.+.
T Consensus       292 Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  292 DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            6678999999999888776643 34899999999999999999988877766543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.34  E-value=3.7e-10  Score=91.00  Aligned_cols=188  Identities=14%  Similarity=0.214  Sum_probs=136.7

Q ss_pred             CcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--cC-cCcEEEEEEc------C-------------CCCCEEEEEe
Q 026765           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--GH-ADSVDQLCWD------P-------------KHADLIATAS   86 (233)
Q Consensus        29 ~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~h-~~~v~~~~~~------~-------------~~~~~l~sg~   86 (233)
                      .|...++|....||.+|||+.....    ...++.  .| ++...+..|.      |             .+...++=|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~----~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQ----LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCce----eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            4567889999999999999985422    111111  11 1222333332      1             2345677888


Q ss_pred             CCCeEEEEECCCCeeeeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCC
Q 026765           87 GDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGE  162 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~  162 (233)
                      ..|.|.+|++..++....+..   .+.+.++.++.+-..|.+++.|..+..|+....+.+...+. ...+..++.+||++
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            899999999999987776653   23445566677778899999999999999876665544332 34577889999998


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC-----CCE-EEEeeCCCcEEEEecCC
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----GRY-FAVGSADSLVSLWDISE  222 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-----~~~-las~s~dg~v~iwd~~~  222 (233)
                      .+++++  +++++|+.++.+.+..|.+|.++|.+++|.-+     |.+ |.++..+..+.+|-+..
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            877765  67999999999999999999999999998766     555 55666778899997653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.5e-09  Score=89.23  Aligned_cols=163  Identities=15%  Similarity=0.196  Sum_probs=104.5

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCC--cEEEEE
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDD--ELTILD  136 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~i~d  136 (233)
                      +..+...+....|+|++..++++...+  ..|.+||+.+++........+......|+|||+.++. ...++  .|.++|
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            445667889999999986555544333  3688899988765443333344456899999998874 44444  577889


Q ss_pred             cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-
Q 026765          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-  212 (233)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-  212 (233)
                      +.+.+...............|+|+|+.++..+. ++  .+.+++..+++.. .+..........+|+|+|++|+..+.+ 
T Consensus       274 ~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~  352 (430)
T PRK00178        274 LASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQD  352 (430)
T ss_pred             CCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccC
Confidence            876544322222223456789999998876653 33  5666666555432 222222223456899999998877643 


Q ss_pred             C--cEEEEecCCcEE
Q 026765          213 S--LVSLWDISEMLC  225 (233)
Q Consensus       213 g--~v~iwd~~~~~~  225 (233)
                      +  .|.+||+.+++.
T Consensus       353 ~~~~l~~~dl~tg~~  367 (430)
T PRK00178        353 GNFHVAAQDLQRGSV  367 (430)
T ss_pred             CceEEEEEECCCCCE
Confidence            3  488899987654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=3e-08  Score=79.22  Aligned_cols=199  Identities=18%  Similarity=0.293  Sum_probs=126.3

Q ss_pred             cEEEEEECcCCCEEEEEeC----CCCEEEEecccCCCCceeeE-EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           22 KVHSVAWNCTGTKLASGSV----DQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~----D~~v~vW~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .-.-++++|++++|.+...    ++.|..|.+.... +.+..+ +..........++++|++..++++--.++.|.++++
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            3456778999999988866    5789999887642 222111 222233444568889987555444446899999999


Q ss_pred             CC-Ceeeee---eee-----------cCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCe--ee--e--eeecCceeeE
Q 026765           97 RS-GKCSQQ---AEL-----------SGENINITYKPDGTHIAVGN-RDDELTILDVRKFK--PI--H--RRKFGYEVNE  154 (233)
Q Consensus        97 ~~-~~~~~~---~~~-----------~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~--~~~~~~~~~~  154 (233)
                      .. +.....   ...           ....-.+.++|+++++++.. ....|.+|++....  ..  .  ....+.....
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            76 333221   111           12234689999999887754 34679999986543  21  1  2234566889


Q ss_pred             EEECCCCCEEEEEeC-CCeEEEEecC--Cc--eeeeEEeee------cCceeEEEECCCCCEEEEee-CCCcEEEEecC
Q 026765          155 IAWNMTGEMFFLTTG-NGTVEVLTYP--SL--RPLDTVVAH------TAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS  221 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~-~~~v~~~~~~--~~--~~~~~~~~~------~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~  221 (233)
                      +.|+|+++++.+..+ ++.|.++++.  .+  +.+..+...      ......|+++|+|++|.++. .+..|.+|+++
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999998877765 7889999887  33  222222211      12467899999999876655 56789999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.28  E-value=2.3e-08  Score=78.83  Aligned_cols=200  Identities=13%  Similarity=0.100  Sum_probs=130.5

Q ss_pred             ECcCCCEEEEEeC----------CCCEEEEecccCCCCceeeEEEecC-----cCcEEEEEEcCCCCCEEEEEeC-CCeE
Q 026765           28 WNCTGTKLASGSV----------DQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG-DKTV   91 (233)
Q Consensus        28 ~~~~~~~l~s~~~----------D~~v~vW~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~sg~~-d~~i   91 (233)
                      ++||++.|..+..          +..|.|||+.+..  .+..+.++..     ...-..++++|++..++++--. +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            8899998877765          7899999987532  2233333211     1223467889987544444424 7889


Q ss_pred             EEEECCCCeeeeeeeecCC-------------------e-------------eE--E------------EECC-CCCeEE
Q 026765           92 RLWDARSGKCSQQAELSGE-------------------N-------------IN--I------------TYKP-DGTHIA  124 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~-------------------~-------------~~--~------------~~~~-~~~~l~  124 (233)
                      .+.|+.+++...+....+.                   .             ..  +            .|.+ +++++.
T Consensus       131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~  210 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW  210 (352)
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence            9999987764433221110                   0             00  1            1122 677777


Q ss_pred             EEcCCCcEEEEEcCCCee-----eeeeec--------CceeeEEEECCCCCEEEEEe----------CCCeEEEEecCCc
Q 026765          125 VGNRDDELTILDVRKFKP-----IHRRKF--------GYEVNEIAWNMTGEMFFLTT----------GNGTVEVLTYPSL  181 (233)
Q Consensus       125 ~~~~d~~i~i~d~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~  181 (233)
                      +..+ |.+.+.|+.....     ......        ...+..++++++++.+.+..          ..+.+.++|..+.
T Consensus       211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~  289 (352)
T TIGR02658       211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG  289 (352)
T ss_pred             EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence            6666 8888888643221     111111        11233489999999888742          2358999999999


Q ss_pred             eeeeEEeeecCceeEEEECCCCC-EEEEee-CCCcEEEEecCCcEEEEeeec
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGR-YFAVGS-ADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~-~las~s-~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.+..+.. ...+..++++||++ +|.+.. .++.|.|.|+.+++.++++.+
T Consensus       290 kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       290 KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence            98887764 45788999999999 777665 578899999999999998743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.6e-09  Score=88.05  Aligned_cols=162  Identities=14%  Similarity=0.218  Sum_probs=102.2

Q ss_pred             ecCcCcEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCc--EEEEEc
Q 026765           63 RGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILDV  137 (233)
Q Consensus        63 ~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d~  137 (233)
                      ..+...+....|+|++..++++...++  .|.+||+.+++........+......|+|||+.|+. ...++.  |.++|+
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            345667888999999876655544443  578889987765433333444456899999998875 445554  777787


Q ss_pred             CCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC-CC
Q 026765          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DS  213 (233)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~-dg  213 (233)
                      .+.+...............|+|+|+.++..+. ++  .+.+++..+++. ..+..........+|+|+|++|+..+. ++
T Consensus       294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            76544322222234566789999998876653 33  455556655543 223222223345789999999877655 34


Q ss_pred             --cEEEEecCCcEE
Q 026765          214 --LVSLWDISEMLC  225 (233)
Q Consensus       214 --~v~iwd~~~~~~  225 (233)
                        .|.++|+.++..
T Consensus       373 ~~~I~~~dl~~g~~  386 (448)
T PRK04792        373 KFNIARQDLETGAM  386 (448)
T ss_pred             ceEEEEEECCCCCe
Confidence              355577776653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=5e-10  Score=85.14  Aligned_cols=201  Identities=13%  Similarity=0.299  Sum_probs=136.2

Q ss_pred             cccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCCCc-------------eeeE-------------------EEecC
Q 026765           20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGK-------------VKDI-------------------ELRGH   65 (233)
Q Consensus        20 ~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~~~-------------~~~~-------------------~~~~h   65 (233)
                      ...|+.+.|.++++  .++....|++|++|-+.......             +..+                   --.+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            56789999998764  46666789999999875322111             0000                   01368


Q ss_pred             cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eecC--------CeeEEEECCCC-CeEEEEcCCCcEEEE
Q 026765           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSG--------ENINITYKPDG-THIAVGNRDDELTIL  135 (233)
Q Consensus        66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~--------~~~~~~~~~~~-~~l~~~~~d~~i~i~  135 (233)
                      +..|.++.++.+.. .++| +.|=.|.+|++.-....... ....        -+.+..|+|.. +.++-.+..|.|++-
T Consensus       164 tyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  164 TYHINSISVNSDKE-TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             eeEeeeeeecCccc-eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            88899999987754 4445 46778999998644321111 1111        12346788864 566677788999999


Q ss_pred             EcCCCee------eeeeec-----------CceeeEEEECCCCCEEEEEeCCCeEEEEec-CCceeeeEEeeec------
Q 026765          136 DVRKFKP------IHRRKF-----------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTY-PSLRPLDTVVAHT------  191 (233)
Q Consensus       136 d~~~~~~------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~------  191 (233)
                      |||....      +...+.           -..|..+.|+.+|+++++-+-- ++++||. ...+++.++..|.      
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHH
Confidence            9984221      100000           0246788999999998877544 8999998 4567777777664      


Q ss_pred             ------Cce---eEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          192 ------AGC---YCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       192 ------~~v---~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                            ..|   ..++|+.++.+++|||.....++|+++.|
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                  223   46899999999999999999999997766

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=7.5e-09  Score=93.06  Aligned_cols=199  Identities=16%  Similarity=0.230  Sum_probs=132.8

Q ss_pred             EEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecC---------------cCcEEEEEEcCCCCCEEEEEe
Q 026765           23 VHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGH---------------ADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      -..++++++++.|..+. ..+.|+++|....   .+..+.-.+.               -..-..++++|+++.++++..
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            46788888888665554 4567888886431   1111100000               012357899997677888888


Q ss_pred             CCCeEEEEECCCCeeeeeee------e---------cCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeee----
Q 026765           87 GDKTVRLWDARSGKCSQQAE------L---------SGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRR----  146 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~------~---------~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~----  146 (233)
                      .++.|++||..++.......      .         -..+..++++|++.+|+ +...++.|++||+.+.......    
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            89999999987765421100      0         01234588999998554 5566789999998764321100    


Q ss_pred             -------ec-----------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeee--------------cCce
Q 026765          147 -------KF-----------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--------------TAGC  194 (233)
Q Consensus       147 -------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~v  194 (233)
                             ..           ......++++++|+.+++-..++.|++||..++... .+.+.              -...
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P  861 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEP  861 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCc
Confidence                   00           012457889999998888899999999998765443 22221              1246


Q ss_pred             eEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       195 ~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      ..++++++|+.+++-+.++.|++||++++..
T Consensus       862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        862 AGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            7899999999999999999999999998765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=3.1e-10  Score=96.80  Aligned_cols=190  Identities=15%  Similarity=0.128  Sum_probs=136.2

Q ss_pred             EEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC----cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD----SVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        26 ~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      ..+..+.++++.+..++.+-+||.....   +.. ++.+...    ...-+-++++ .-.+++|+--+.|.+|+......
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~-~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSS---VLS-KIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCc---eeh-hcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCC
Confidence            4455567889999999999999975321   111 1111111    1111122332 34678999999999999874333


Q ss_pred             ee-eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee--ecCceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765          102 SQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (233)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  178 (233)
                      .. ..-+.+.++.+.++.||+++++.+.|..+++|++++.+.....  .+...+..+.+.++  .+++++.|.+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            22 3334567788999999999999999999999999887655422  23445677777776  9999999999999976


Q ss_pred             CCceeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          179 PSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       179 ~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      .. +....+..|. ..+..++..+....++|++.|+.+++|++...
T Consensus       246 ~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  246 NG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            43 3334666675 46889999999899999999999999998743

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=7.6e-11  Score=105.48  Aligned_cols=197  Identities=16%  Similarity=0.250  Sum_probs=138.8

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      ...|-..|.++.=+|...+-+||+.||.|++|.....  ..+......|. ..|+.+.|+.+|.+ +..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~-s~vtr~~f~~qGnk-~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGN-SRVTRSRFNHQGNK-FGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCc-chhhhhhhcccCCc-eeeeccCCceeecc
Confidence            3445667888888888899999999999999986432  22333334444 77888999888765 45678899999998


Q ss_pred             CCCCeeeeeeeec-CCeeEEEECCCCCeEEEEc---CCCcEEEEEcCC---CeeeeeeecCceeeEEEECCCCCEEEEEe
Q 026765           96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGN---RDDELTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      ... +.......+ .....+.|-.  ..+++.+   .++.+.+||...   ...++ ..+...++++++-|..+.+++|+
T Consensus      2280 ~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             cCC-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecC
Confidence            862 222222222 1122344432  3444443   357899999532   12233 44566789999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+|.+.+||.+..+....+..         ++ ...++++|+..|.++||++.+-..+++|+
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999999987665544332         44 56789999999999999999887787775

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.23  E-value=3.1e-10  Score=87.60  Aligned_cols=156  Identities=16%  Similarity=0.207  Sum_probs=106.6

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCee----eeeeeecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCCCeeeee
Q 026765           73 CWDPKHADLIATASGDKTVRLWDARSGKC----SQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHR  145 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~  145 (233)
                      ..++ ++.+++.+..++...+++.+....    .....+......+.+..+.....++..-   ..+.+|....+.....
T Consensus        69 ~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~  147 (390)
T KOG3914|consen   69 LTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI  147 (390)
T ss_pred             ccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence            3444 467888888888877777654432    2222333334455555555554444333   3344444433333222


Q ss_pred             eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      .-+-..+..++|+||++.++++..|..|++-.++..-.+..+ .||..-|..++.-++ +.|++||.|+++++||+.+|.
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence            223345789999999999999999999999988765555554 479999999999764 568999999999999999999


Q ss_pred             EEEeee
Q 026765          225 CVRTFT  230 (233)
Q Consensus       225 ~i~~~~  230 (233)
                      ++.+|.
T Consensus       227 ~L~t~d  232 (390)
T KOG3914|consen  227 LLDTCD  232 (390)
T ss_pred             cccccc
Confidence            887764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=5e-09  Score=85.85  Aligned_cols=183  Identities=11%  Similarity=0.137  Sum_probs=107.0

Q ss_pred             ccccEEEEEECcCCCEEEEEeC-CC----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSV-DQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~-D~----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.....+|+|||++|+..+. ++    .+.+|++.....+....+ ..++.......+|+|++..++++...++...+
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l  307 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI  307 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-ecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence            3445567899999998876542 23    344466543211121211 22222344567999998766666656776666


Q ss_pred             EE--CCC-Ceeeeeeee-cCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           94 WD--ARS-GKCSQQAEL-SGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        94 wd--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                      |.  +.. +.....+.. ........|+|||++|+....+   ..|.+||+.+.+..........+....|+|+|+.++.
T Consensus       308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEE
Confidence            64  432 222222222 2334568899999998865543   3588999877654332222234567899999998876


Q ss_pred             EeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCC
Q 026765          167 TTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG  203 (233)
Q Consensus       167 ~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  203 (233)
                      ...   ...+.+++...++.. .+....+.+...+|+|..
T Consensus       388 ~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        388 SAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence            543   356777777665443 333334445667788753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.21  E-value=1e-10  Score=104.72  Aligned_cols=167  Identities=18%  Similarity=0.299  Sum_probs=122.5

Q ss_pred             EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      .++.+...|.++.-||..+.+ ++|+.||.+++|....++.+..+...+  .+..+.|+.+|+.+..+..||.+.+|...
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Y-ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYY-LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceE-EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            455567788888889987755 599999999999988877666555433  34457899999999999999999999875


Q ss_pred             CCeeeeeee-cCceeeEEEECCCCCEEEEEe---CCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765          139 KFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                       .++....+ +......+.|  -+..++.++   .++.+.+||..  .....-. ..|.++++++++-|..+.|++|+.+
T Consensus      2282 -pk~~~s~qchnk~~~Df~F--i~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRF--IGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             -CcceeccccCCccccceee--eehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence             23322222 2222333333  223344332   47889999863  2222222 7899999999999999999999999


Q ss_pred             CcEEEEecCCcEEEEeeecC
Q 026765          213 SLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       213 g~v~iwd~~~~~~i~~~~~~  232 (233)
                      |.|++||+++...+++|+.+
T Consensus      2358 G~v~l~D~rqrql~h~~~~~ 2377 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQAL 2377 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhhh
Confidence            99999999999988888764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.9e-10  Score=97.97  Aligned_cols=118  Identities=24%  Similarity=0.313  Sum_probs=96.3

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+.||.+.|..+.|+.+|.+++|.|.|+++|+|+++......   ....+|+..|-.++|+|+   .+++++.|.+.++|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW  243 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN---RIITVGEDCTCRVW  243 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc---eeEEeccceEEEEE
Confidence            578999999999999999999999999999999998654332   235589999999999986   68899999999999


Q ss_pred             ECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           95 DARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        95 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      +....+...... .......++..++...+++++.|+.+++||+.
T Consensus       244 ~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  244 GVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            765544331111 22456678888888899999999999999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.19  E-value=6.7e-11  Score=62.95  Aligned_cols=37  Identities=46%  Similarity=0.832  Sum_probs=34.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH   48 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~   48 (233)
                      ..+++.+|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3578999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.18  E-value=2.3e-09  Score=81.48  Aligned_cols=204  Identities=15%  Similarity=0.209  Sum_probs=139.3

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.++||.+.|++...-|-.+-+.+.+.|.+||||--....+-.  .-...-...+++++++.++ ...|+.|-.+|++.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w--psI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW--PSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC--chhhhhCCCCceEeeeecc-ceEEEEEEecceEE
Confidence            35678999999999988989999999999999999533211111  1111224568899999886 45677888889888


Q ss_pred             EEECCCCe----eeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765           93 LWDARSGK----CSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        93 iwd~~~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      -+.+...-    ..+. ......+..+.|+....++++.+.|..+..--.+....+..+.+......+.+...  +-..|
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG  171 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG  171 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence            77654321    1111 11233455677888888999999998766544444444433332222222222222  44566


Q ss_pred             eCCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          168 TGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       168 ~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ...|.+....+.  ...++.++.+|...+.+.+|.|..+.|.+|..|..+.+||+-
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence            666777666553  345778889999999999999999999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.18  E-value=3.8e-11  Score=94.21  Aligned_cols=189  Identities=17%  Similarity=0.193  Sum_probs=136.3

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ...|..+.|-+...++|. ...+-+.|||-.  +.+   .-.++.| ..|..+.|-|.. .+|++++..|.++.-|+..|
T Consensus       170 ~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~--GtE---lHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~G  241 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAV-AQKKYVYVYDNN--GTE---LHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTG  241 (545)
T ss_pred             hhhhhhhhhhcchHHHHh-hhhceEEEecCC--CcE---Eeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechh
Confidence            344555666544444444 456778888743  111   1112222 568889998863 67889999999999999999


Q ss_pred             eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      +.+..+... +....+.-+|-...+-+|...|.+.+|...+.+++-. ..+..++.++++.++|+++++++.|..++|||
T Consensus       242 klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  242 KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence            877665544 3444567788888888999999999999988777654 34567899999999999999999999999999


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      ++......++.. ..+...+++|..  -+.+.|....|.||.
T Consensus       322 lR~~~ql~t~~t-p~~a~~ls~Sqk--glLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  322 LRNFYQLHTYRT-PHPASNLSLSQK--GLLALSYGDHVQIWK  360 (545)
T ss_pred             eccccccceeec-CCCccccccccc--cceeeecCCeeeeeh
Confidence            988775555443 334566777754  344556667799995

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.1e-07  Score=77.67  Aligned_cols=192  Identities=9%  Similarity=0.026  Sum_probs=115.1

Q ss_pred             cEEEEEECcCCCE-EEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEE
Q 026765           22 KVHSVAWNCTGTK-LASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWD   95 (233)
Q Consensus        22 ~V~~~~~~~~~~~-l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd   95 (233)
                      .+....|+|||+. ++..+.+   ..|.++|+...   ...  .+...........|+|++..++++.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~--~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKE--KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEE--EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            6678999999985 6655554   33555555332   222  2222344556678999987777766555  4577778


Q ss_pred             CCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC--
Q 026765           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--  170 (233)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  170 (233)
                      +.++...+............|+|||+.|+-.+. .+  .|.++|+.+.+.......+.  ....|+|+|+.++.....  
T Consensus       264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence            877764433222222345689999998775543 33  46777776554322111121  124899999998877643  


Q ss_pred             -------CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-C--cEEEEecCC
Q 026765          171 -------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S--LVSLWDISE  222 (233)
Q Consensus       171 -------~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g--~v~iwd~~~  222 (233)
                             ..+.+.+...++. ..+... ......+|+|||+.++-.+.+ +  .+.+.+++-
T Consensus       342 ~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             cccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                   3677777766543 333322 222357899999987665543 3  356666653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.5e-10  Score=89.55  Aligned_cols=215  Identities=15%  Similarity=0.119  Sum_probs=144.9

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-CCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d~~i~   92 (233)
                      +.|. |++.|+-+.-+ -.+++.+++.||.+|-|-...- .+.-....+..|...+.+++.+-++ .++.|.+. |+.++
T Consensus         4 ksym-hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~K   79 (558)
T KOG0882|consen    4 KSYM-HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVK   79 (558)
T ss_pred             hhhc-ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccc-eeEeeccCccccee
Confidence            4454 88888877633 4689999999999999975431 1111112356677788888877654 56778777 99999


Q ss_pred             EEECCCCeeeeeeeecCCe--eEEEECCCC--CeEEEEc-CCCcEEEEEcCCCe--eeee-eecCceeeEEEECCCCCEE
Q 026765           93 LWDARSGKCSQQAELSGEN--INITYKPDG--THIAVGN-RDDELTILDVRKFK--PIHR-RKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~--~~~~~~~~~--~~l~~~~-~d~~i~i~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~  164 (233)
                      ++|+.+-..+.-......+  .++..+|..  ..++++. .++.+.++|-+...  .... ..+..++..+...+.++.+
T Consensus        80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            9998765443222222111  122223321  1344443 46889999975432  2222 2244678889999999999


Q ss_pred             EEEeCCCeEEEEecCC-cee--------------eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          165 FLTTGNGTVEVLTYPS-LRP--------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~-~~~--------------~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      ++....|.|..|..+. .+.              +..+........++.|+|++..+++-+.|.+|++++.+.+..+++|
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            9999999999998762 111              0111122344678999999999999999999999999999999988


Q ss_pred             ecC
Q 026765          230 TKL  232 (233)
Q Consensus       230 ~~~  232 (233)
                      ++.
T Consensus       240 DE~  242 (558)
T KOG0882|consen  240 DEV  242 (558)
T ss_pred             hcc
Confidence            764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.14  E-value=2.1e-10  Score=61.00  Aligned_cols=38  Identities=32%  Similarity=0.625  Sum_probs=36.1

Q ss_pred             eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +++..+.+|...|++++|+|++++|++|+.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.11  E-value=2.9e-08  Score=75.37  Aligned_cols=201  Identities=18%  Similarity=0.246  Sum_probs=124.5

Q ss_pred             ccccEEEEEECcCCCE-EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-C--------
Q 026765           19 HKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-D--------   88 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~-l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d--------   88 (233)
                      -.+++.++.|||||.. |.+...|-.|.||.+.+...     .-++--+..+..++|+|+++ +.+-++. |        
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-----~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-----YLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQIS  163 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEecccee-----EEecccccCceeEEECCCCc-eeeeeecccHHHHHHHH
Confidence            4678899999999955 56666799999999875321     11222234556778888754 3332222 1        


Q ss_pred             ---------------------------CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765           89 ---------------------------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (233)
Q Consensus        89 ---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (233)
                                                 .-+.+||---.-.+...+-.-....++|+|.++.+++|+.|+++++.+--+.+
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk  243 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK  243 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence                                       12333332111011111112234458899999999999999998885411100


Q ss_pred             ------------------------------------------------------------eeeeee-------cCceeeE
Q 026765          142 ------------------------------------------------------------PIHRRK-------FGYEVNE  154 (233)
Q Consensus       142 ------------------------------------------------------------~~~~~~-------~~~~~~~  154 (233)
                                                                                  .++..+       ....+..
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence                                                                        000000       0012456


Q ss_pred             EEECCCCCEEEEEeCC--CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          155 IAWNMTGEMFFLTTGN--GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      ++|++|..++++-..+  +.+-+||++..+... +.....+|....|+|....|+.+.....+++|-..--.++
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence            8899999888877654  678888987654432 2235668899999999988888887778999987654444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.11  E-value=1.4e-07  Score=70.40  Aligned_cols=196  Identities=16%  Similarity=0.225  Sum_probs=111.1

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEec-CcCcEEEEEEcCCC-----CCEEEEEeCCCeEEEEE
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRG-HADSVDQLCWDPKH-----ADLIATASGDKTVRLWD   95 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~-----~~~l~sg~~d~~i~iwd   95 (233)
                      =+-++||||+..||.+...|+|+++|+.....-.+.. ....+ -..+|..+.|-+..     ...|+.-..+|.++=|-
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            4578999999999999999999999985311000000 01111 23567777774432     22455667888888776


Q ss_pred             CCC-----Ceeeeeeee----cCCeeEEEECCCCCeEEEEcCCCc-----------EEEEEcCCCeeeeeeecCceeeEE
Q 026765           96 ARS-----GKCSQQAEL----SGENINITYKPDGTHIAVGNRDDE-----------LTILDVRKFKPIHRRKFGYEVNEI  155 (233)
Q Consensus        96 ~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~-----------i~i~d~~~~~~~~~~~~~~~~~~~  155 (233)
                      +..     .+....+.+    ...+.++.++|..+.|++|+....           +..|.+-+..+-..         .
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~  196 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---------Q  196 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---------E
Confidence            532     223344443    234567889999888887775321           22232222111110         0


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ......+........+   ++...+.+...........|..++.||||+.||+...+|.|.+|++.+...++++.
T Consensus       197 v~~~~~~~~~~~~~~~---~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  197 VTSSEDDITASSKRRG---LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccccCccccccccccc---eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            0000111111111111   22222222211112245679999999999999999999999999999887776654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=1.7e-06  Score=66.61  Aligned_cols=204  Identities=19%  Similarity=0.279  Sum_probs=134.7

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCcee---eEEEecCcCcEEEEEEcCCCCCEEEEEeC-C
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVK---DIELRGHADSVDQLCWDPKHADLIATASG-D   88 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d   88 (233)
                      +-.+.+..+=|+|+|+++.|.++-.   +|.|..|.++... +...   ...+.++  +-.-++++++++ +++++.. -
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~--~p~yvsvd~~g~-~vf~AnY~~  110 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGS--PPCYVSVDEDGR-FVFVANYHS  110 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCC--CCeEEEECCCCC-EEEEEEccC
Confidence            3456778889999999999988754   5888888887531 2221   1122232  336678888764 5666655 5


Q ss_pred             CeEEEEECCC-Cee---eeeeeecCC----------eeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeee----eeecC
Q 026765           89 KTVRLWDARS-GKC---SQQAELSGE----------NINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH----RRKFG  149 (233)
Q Consensus        89 ~~i~iwd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~----~~~~~  149 (233)
                      +.|.++-++. |..   ++.....+.          .-...+.|+++++++... -.+|.+|++..+....    ..+.+
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G  190 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG  190 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence            7899998865 322   122222111          234778999999887764 3679999987544322    22445


Q ss_pred             ceeeEEEECCCCCEEEEEeC-CCeEEEEecCCc-eeeeEEee---------ecCceeEEEECCCCCEEEEeeC-CCcEEE
Q 026765          150 YEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSL-RPLDTVVA---------HTAGCYCIAIDPMGRYFAVGSA-DSLVSL  217 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~---------~~~~v~~i~~~p~~~~las~s~-dg~v~i  217 (233)
                      .....+.|+|++++..+.++ +++|.+|.+... ..+..+..         ...+.-.|.++|+|++|.++.+ ...|-+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            67889999999999888876 899999988652 22222221         1234567889999999887664 357888


Q ss_pred             EecCCc
Q 026765          218 WDISEM  223 (233)
Q Consensus       218 wd~~~~  223 (233)
                      |.+...
T Consensus       271 f~V~~~  276 (346)
T COG2706         271 FSVDPD  276 (346)
T ss_pred             EEEcCC
Confidence            887644

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=3.9e-08  Score=76.03  Aligned_cols=207  Identities=16%  Similarity=0.203  Sum_probs=139.9

Q ss_pred             ccccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCCcee-e-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           19 HKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHGKVK-D-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        19 H~~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~~~~-~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      -...|+.++|.-++  +.+...+.|..+.............. . ......+.+|..++..  + ..|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--d-g~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--D-GTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--C-CEEEEEecCCcEEEE
Confidence            35567788887655  34555557888777766432211100 0 0122334566666543  2 356788999999999


Q ss_pred             ECCCCee----eeeeeecCCeeEEEECCCCCe-EEEEcCC--CcEEEEEcCCCeeeeeeec------C--ce--eeEEEE
Q 026765           95 DARSGKC----SQQAELSGENINITYKPDGTH-IAVGNRD--DELTILDVRKFKPIHRRKF------G--YE--VNEIAW  157 (233)
Q Consensus        95 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~------~--~~--~~~~~~  157 (233)
                      ....+..    ...+........+.-++...+ +++|+..  ..+.+||+...+++..-+-      +  .+  ++.+.|
T Consensus       131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            9874431    122223333444555565555 4558887  7899999988766644321      1  12  345566


Q ss_pred             CCC--CCEEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          158 NMT--GEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       158 ~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      -+.  ...+++++.-+.+++||.+. .+|+..+.-...++.++...|+++++.+|..-|.+..||++.+.....
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            655  67789999999999999875 468888888888999999999999999999999999999999876554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.05  E-value=8.8e-07  Score=68.18  Aligned_cols=197  Identities=13%  Similarity=0.225  Sum_probs=129.6

Q ss_pred             EEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCc----------EEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           24 HSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADS----------VDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .-++++++|++++++.+ -+.|.|+-+...+.-. .....-.|...          +....+.|++..+++.--.-..|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            67888999999999875 6889999876533211 11122234443          788899998765555555556799


Q ss_pred             EEECCCCeeeee----eeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCC-eeeeeee------c----CceeeEEE
Q 026765           93 LWDARSGKCSQQ----AELSGENINITYKPDGTHIAVGN-RDDELTILDVRKF-KPIHRRK------F----GYEVNEIA  156 (233)
Q Consensus        93 iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~------~----~~~~~~~~  156 (233)
                      +|++..++....    ........-+.|+|++++..+.. -+++|.+|..... ..+..++      .    ......+.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999998765332    12223445699999999887655 4788999987552 2222211      1    12355788


Q ss_pred             ECCCCCEEEEEeC-CCeEEEEecCC--ce--eeeEEeeecCceeEEEECCCCCEEEEeeCC-CcEEEEecC
Q 026765          157 WNMTGEMFFLTTG-NGTVEVLTYPS--LR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDIS  221 (233)
Q Consensus       157 ~~~~~~~~~~~~~-~~~v~~~~~~~--~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~v~iwd~~  221 (233)
                      .+++|+++.++.. ...|.++....  ++  .......+........++|.+++|+++..+ ..|.+|..+
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            8999999988764 45666666543  22  111122344446789999999999988876 569999875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.04  E-value=7.2e-09  Score=78.10  Aligned_cols=210  Identities=14%  Similarity=0.242  Sum_probs=126.2

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC-CCceeeEEEecCc------------CcEEEEEEcC-CCCCEEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-HGKVKDIELRGHA------------DSVDQLCWDP-KHADLIAT   84 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~-~~~~~~~~~~~h~------------~~v~~~~~~~-~~~~~l~s   84 (233)
                      ....|+++.|...|.+|++|...|.|.++.-+... .+-.-..++.+|.            ..|..+.|.. .+...++-
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            46679999999999999999999999998643211 0000011233443            3466777743 33334445


Q ss_pred             EeCCCeEEEEECCCCeee--e-------------------------eeeecC-----------------CeeEEEECCCC
Q 026765           85 ASGDKTVRLWDARSGKCS--Q-------------------------QAELSG-----------------ENINITYKPDG  120 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~--~-------------------------~~~~~~-----------------~~~~~~~~~~~  120 (233)
                      .+.|++|++|.+......  .                         ....+.                 ...++.+..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            678999999988654110  0                         000000                 01134555555


Q ss_pred             CeEEEEcCCCcEEEEEcCCCe----eeeeeecC-----ceeeEEEECCC-CCEEEEEeCCCeEEEEecCCce------ee
Q 026765          121 THIAVGNRDDELTILDVRKFK----PIHRRKFG-----YEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLR------PL  184 (233)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~------~~  184 (233)
                      ..++ ...|-+|.+|++....    .+...++.     ..+++..|+|. .+.+..++..|.+++.|++...      .+
T Consensus       185 et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            4444 3456678999875422    11111111     23677788876 4567788889999999987321      11


Q ss_pred             eE----------EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC-CcEEEEeee
Q 026765          185 DT----------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFT  230 (233)
Q Consensus       185 ~~----------~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~-~~~~i~~~~  230 (233)
                      ..          +..-...|..+.|+++|+++++-+ --+|+|||++ ...|+++.+
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec
Confidence            11          111224567789999999988544 3579999997 445777764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=8e-09  Score=85.73  Aligned_cols=199  Identities=17%  Similarity=0.239  Sum_probs=140.4

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-----------ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      .+....|+.|+....++|.||.||.+||-.+.+....           -.....+.||...|.-+.|+.+.++ |-+...
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCC
Confidence            3556789999999999999999999999877543211           0112357899999999999987654 568888


Q ss_pred             CCeEEEEECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765           88 DKTVRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                      +|.|.+|=+-.+.......   -.+-+.+++|..+|..++..-+||.+.+=.+...+.-.....+.....+.|++|.+.+
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence            9999999987776433221   2234567999999999999999999888766544332222233456688999999999


Q ss_pred             EEEeCCCeEEEEecCCc-----e--eeeEEee----ecCceeEEEE--------CCCCCEEEEeeCCCcEEEE
Q 026765          165 FLTTGNGTVEVLTYPSL-----R--PLDTVVA----HTAGCYCIAI--------DPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~-----~--~~~~~~~----~~~~v~~i~~--------~p~~~~las~s~dg~v~iw  218 (233)
                      +.+-.+|.++++|....     +  +.....+    ....+..+.|        -|+...||.+-.+|.+.|-
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            99999999999986421     0  1111111    1122344444        3577789999888887664

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.6e-09  Score=82.44  Aligned_cols=147  Identities=11%  Similarity=0.131  Sum_probs=114.0

Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-----eeeeeeecCceeeEEEE
Q 026765           83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-----KPIHRRKFGYEVNEIAW  157 (233)
Q Consensus        83 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~  157 (233)
                      ++.+.+..+-+-|+.++-. +.+...+.+.++.|...++.+..|..+|.|..+|+|..     .+.+..-++..++++..
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            5677788888889887643 34445667788889988899999999999999999854     34555666777777754


Q ss_pred             C-CCCCEEEEEeCCCeEEEEecCCcee---eeEEeeecCceeE--EEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          158 N-MTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYC--IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       158 ~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~--i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      = .+++++++.+.+|+|++||.+--+.   +.++.+|...-.-  +-..+....+++++.|...|||.++++..+.+++
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            3 3788999999999999999976555   7778888653322  3345667789999999999999999998887753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=1.1e-09  Score=88.25  Aligned_cols=170  Identities=16%  Similarity=0.213  Sum_probs=116.3

Q ss_pred             eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-------eeeeeeee-cCCeeEEEECCCCCeEEEEcCCC
Q 026765           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAEL-SGENINITYKPDGTHIAVGNRDD  130 (233)
Q Consensus        59 ~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~  130 (233)
                      ...+.||...|+.++--. +.+-+++++.|++|++|.++..       .|..+... ..++-.+.|..+-++++++  |+
T Consensus       728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            345678998888775443 3456789999999999998642       13333322 2344567787777777654  78


Q ss_pred             cEEEEEcCCCeeeeeeec----C--ceeeEEEECCCCCEEEEE-eCCCeEEEEecCCceeeeEEeee-----cCceeEEE
Q 026765          131 ELTILDVRKFKPIHRRKF----G--YEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPLDTVVAH-----TAGCYCIA  198 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----~~~v~~i~  198 (233)
                      .+++||.--++++.+...    +  ..+.++ -+-+...++++ +...+++++|.+..+....+...     ..-+.+++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEec-ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            899999765554432221    1  112222 12234455555 56889999999877665555432     34578999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          199 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       199 ~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .-|.|+++|.|-.+|+|.+.|.+.|+.|.....+
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpm  917 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPM  917 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence            9999999999999999999999999988876554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.98  E-value=3.1e-07  Score=68.04  Aligned_cols=200  Identities=11%  Similarity=0.055  Sum_probs=127.1

Q ss_pred             EEEECcC-----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           25 SVAWNCT-----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        25 ~~~~~~~-----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      .+.|.|-     ..+||.||+-|...+|...+.. ....  ....|...|.-+.=.-+...-+.-++.|.++++.++..+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~--~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~  148 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLY--QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD  148 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcc-ccee--eecccccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence            4566663     3578999999999999876422 1111  122233322211100011122445788999999988654


Q ss_pred             eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeee-e--ecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765          100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHR-R--KFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ......... -....+.++++++++++.+....+..|.+.... -+.. .  .....-.+..|+.....++++..||.+.
T Consensus       149 s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  149 SNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA  228 (344)
T ss_pred             cccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence            322222111 124568899999999999999999999875422 2211 1  1223345778999999999999999999


Q ss_pred             EEecCCce-eeeEE----eeecCceeEEEECCCCC--EEEEeeCCCcEEEEecCCcEEEE
Q 026765          175 VLTYPSLR-PLDTV----VAHTAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       175 ~~~~~~~~-~~~~~----~~~~~~v~~i~~~p~~~--~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      |||.+... ++...    ..|.+.+..+.|+|.|.  +|...-.=+.+.+-|++.+...+
T Consensus       229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            99987532 22222    23778899999998774  34444455789999998775443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.1e-08  Score=84.91  Aligned_cols=196  Identities=16%  Similarity=0.239  Sum_probs=132.5

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ...+++.||++.|..+.|+.....|-|...+|.|.||-+-.+  ++...+.-...+..|.+++|+.+|+++ +..-.||.
T Consensus        62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg--sW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGa  138 (1189)
T KOG2041|consen   62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG--SWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGA  138 (1189)
T ss_pred             chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc--cHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCC
Confidence            345789999999999999999999999999999999987532  232222223355678999999987654 45678888


Q ss_pred             EEEEECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--------ee----eeecCceeeEEEE
Q 026765           91 VRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKP--------IH----RRKFGYEVNEIAW  157 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------~~----~~~~~~~~~~~~~  157 (233)
                      |.+=.+...+. .--.+.+. ..-+.|++|.+.++.+-..|.+.++|....-.        +.    ....+..+..+.|
T Consensus       139 vIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w  217 (1189)
T KOG2041|consen  139 VIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW  217 (1189)
T ss_pred             EEEEeecccee-cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence            87665544321 11111111 22478999998888888899999999643110        00    0011223445555


Q ss_pred             --------CCCCCEEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765          158 --------NMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       158 --------~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                              .|+-..+++.-.+|.+.+.... +.+|...  ..+-.+..+.|+++|..||.++.|
T Consensus       218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCc
Confidence                    3567788899999999887653 3334322  223467789999999999999865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=1.8e-06  Score=78.16  Aligned_cols=198  Identities=8%  Similarity=0.021  Sum_probs=125.5

Q ss_pred             EEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEec--------------CcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           24 HSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--------------HADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        24 ~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      ..+++++. +...++-..++.|++||...    ... ..+.+              +-..-..+++++++..++++-..+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G----~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG----NFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC----CEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            35788775 55667777788999998742    111 11111              112346788888755455555566


Q ss_pred             CeEEEEECCCCeeeeeeee-----------------cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeee---
Q 026765           89 KTVRLWDARSGKCSQQAEL-----------------SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK---  147 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---  147 (233)
                      +.|+++|..++........                 -..+..++++| ++..+++...++.|.+||...........   
T Consensus       646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~  725 (1057)
T PLN02919        646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY  725 (1057)
T ss_pred             ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence            7899999877643211100                 01235689999 45566677778899999986543211000   


Q ss_pred             ------------cCceeeEEEECCCCCE-EEEEeCCCeEEEEecCCceeeeEE-------------ee--------ecCc
Q 026765          148 ------------FGYEVNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLRPLDTV-------------VA--------HTAG  193 (233)
Q Consensus       148 ------------~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-------------~~--------~~~~  193 (233)
                                  .......++++++++. +++...++.|++||..++......             -.        .-..
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                        0123457899999985 455567899999998765421100             00        0112


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      ...++++++|+.+++-+.++.|++||...+...
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            458899999999999999999999999877654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=1.3e-06  Score=69.80  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             CcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-----c-----CcCcEEEEE-EcCCCCCEEEEEeCCCeEEEEECC
Q 026765           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----G-----HADSVDQLC-WDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        29 ~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-----~-----h~~~v~~~~-~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      +.||+.++- +.-|.|.++|.++....   .+++.     .     ...+.--+. |++.++.+++..|. |+..|.+.-
T Consensus       275 nsDGkrIvF-q~~GdIylydP~td~le---kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~  349 (668)
T COG4946         275 NSDGKRIVF-QNAGDIYLYDPETDSLE---KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW  349 (668)
T ss_pred             CCCCcEEEE-ecCCcEEEeCCCcCcce---eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence            346666544 23477888887654322   22221     0     011111222 55566677766554 556665544


Q ss_pred             CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEE
Q 026765           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  176 (233)
                      .+-.++ ....+.+.-..+..+++-++.|..|| .+-++|.++.+.-...+--..+..+..+++|+.++++.....+.++
T Consensus       350 ~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         350 DGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             CCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            433222 12223333345555666788899988 8999999876643333333468899999999999999999999999


Q ss_pred             ecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC----cEEEEecCCcEEE
Q 026765          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----LVSLWDISEMLCV  226 (233)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg----~v~iwd~~~~~~i  226 (233)
                      |.+++....--....+-|+.+.|+|+++++|-+-.+|    .|+++|+..++..
T Consensus       429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            9988765433334456789999999999999888776    5899999987653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.92  E-value=5.3e-08  Score=75.53  Aligned_cols=161  Identities=16%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeE---EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ...+.+++++.++|.+-.++...++++..... .....   ..+.....++.+..... ..+.-.++....+.+|....+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeeccccc
Confidence            34455677888888888878776776643221 11111   11222233444443321 122234455666777777665


Q ss_pred             eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc--eeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      .+...+-+-.....++++||+++|+++..|..|++-.......+.....++  -|..++.. ++..++++++|+++++||
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEEe
Confidence            544433333455679999999999999999999997766555555544433  35566664 345589999999999999


Q ss_pred             cCCceeeeE
Q 026765          178 YPSLRPLDT  186 (233)
Q Consensus       178 ~~~~~~~~~  186 (233)
                      +.+++.+.+
T Consensus       222 ~~sgk~L~t  230 (390)
T KOG3914|consen  222 ITSGKLLDT  230 (390)
T ss_pred             cccCCcccc
Confidence            988775543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.91  E-value=1.4e-07  Score=72.01  Aligned_cols=201  Identities=11%  Similarity=0.173  Sum_probs=137.8

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ..+++++.+.++...|+.|=..|+|.-+.+...-...........|...|..+-|+.. ...+++.+.|+.+.---.+.+
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccC
Confidence            6678999999999999999899998887664211111111234579999999999865 567889999987765444444


Q ss_pred             eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC--Ceeeeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEE
Q 026765          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK--FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (233)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  176 (233)
                      .......+.....++.+.-.  +..+|...+.+.+..+..  ..++... .+...+.++.|.+....+.++..|..+.+|
T Consensus       147 ~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  147 NRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW  224 (404)
T ss_pred             CcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence            33222222211122222111  445566667776665433  2333332 244678999999999999999999999999


Q ss_pred             ecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          177 TYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       177 ~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      |+.-.+ ....+.+|...|..+..-+.-+.|.+++.||.|.+||++-.
T Consensus       225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            986433 33456688889998888888889999999999999999844

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.90  E-value=1.4e-06  Score=65.45  Aligned_cols=181  Identities=15%  Similarity=0.238  Sum_probs=112.5

Q ss_pred             CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcC--CCCC-EEEEEeCCCeEEEEECCCCeeeeeee-ecC------Ce
Q 026765           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP--KHAD-LIATASGDKTVRLWDARSGKCSQQAE-LSG------EN  111 (233)
Q Consensus        42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~------~~  111 (233)
                      |.+.++++..-.....-.++-. -...+..+.|..  .++. .++-+-.+|.|.++..........+. ++.      ..
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             cceEEEeecccccCccceeeee-cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4567777653221111111111 224455666632  2233 45567778899998765443322222 111      23


Q ss_pred             eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee--e-eecCceeeEEEECCC-CCEEEEEeCCCeEEEEecCC-ceeeeE
Q 026765          112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIH--R-RKFGYEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPS-LRPLDT  186 (233)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~  186 (233)
                      .++.|++.+..++++..+|.+.+.+........  . ..+..+.....|+.. .+.+.+|+.|+.+..||.+. .+.+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            457788999999999999998855433222211  2 123456666666543 36778899999999999983 333322


Q ss_pred             -EeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCc
Q 026765          187 -VVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       187 -~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~  223 (233)
                       ...|..+|.+|.-+| ...++++|+.|-.|++||.+.+
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence             456899999999886 5679999999999999999843

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=3.9e-06  Score=67.09  Aligned_cols=119  Identities=14%  Similarity=0.191  Sum_probs=89.0

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCC-CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~-~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      -+|.+.|.-..+.-+++-++.|-.|| .+-|++....   ..+  .+.+.-+.|.++..+|++ +.++.+.....+.+.|
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~k--r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vid  429 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVK--RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVID  429 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEE--EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEE
Confidence            36888898888888888899999999 8999987642   222  344556789999999985 5667788888899999


Q ss_pred             CCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCC----cEEEEEcCCCe
Q 026765           96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDD----ELTILDVRKFK  141 (233)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~  141 (233)
                      +.++.....-. -.+.+....|+|+++++|-+--+|    .|+++|+...+
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            99987533221 224566789999999999877665    58889886544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=3.7e-06  Score=68.83  Aligned_cols=155  Identities=12%  Similarity=0.056  Sum_probs=97.3

Q ss_pred             cEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CC--CcEEEEEcCCCe
Q 026765           68 SVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RD--DELTILDVRKFK  141 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~  141 (233)
                      ......|+|++..+++..+.   +..|.++|+.+++........+......|+|||+.++... .+  ..|.++|+.+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            67788999998764443223   3568889998887655444455555678999998876433 23  457777876654


Q ss_pred             eeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC------
Q 026765          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------  212 (233)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d------  212 (233)
                      .............-.|+|||+.++..+. .+  .+.+++...++... +.....  ....|+|+|++|+-.+..      
T Consensus       269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVFHGK--NNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-CccCCC--cCceECCCCCEEEEEEcCCCcccC
Confidence            3322222212334579999998877653 33  56666776554422 221111  124899999998766643      


Q ss_pred             ---CcEEEEecCCcEE
Q 026765          213 ---SLVSLWDISEMLC  225 (233)
Q Consensus       213 ---g~v~iwd~~~~~~  225 (233)
                         ..|.+.|+..+..
T Consensus       346 ~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        346 KNTFNLYLISTNSDYI  361 (419)
T ss_pred             CCCcEEEEEECCCCCe
Confidence               2678888877653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=2.8e-08  Score=82.79  Aligned_cols=204  Identities=19%  Similarity=0.275  Sum_probs=130.9

Q ss_pred             eeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .+-||..+|+.+.|+|+. ..+++++.|-.|..||+.....   ....+..-......++|+-.+++.+++ +..+.|++
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~v  184 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---PFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFV  184 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---ceeeeecccccCceeeecccCcchhhh-ccCCceEE
Confidence            457999999999999987 5789999999999999864221   122222333456778998888887754 55667999


Q ss_pred             EECCCCeeee-eeeec-CCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCee--eeeeecCceeeEEEECCCCCEEEEE-
Q 026765           94 WDARSGKCSQ-QAELS-GENINITYKP-DGTHIAVGNRDDELTILDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFFLT-  167 (233)
Q Consensus        94 wd~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (233)
                      ||++.+.... ....+ ..+..+.|.. .-..+.+++.|++++.||-.+...  -+......++..-.+-|-|+-.++. 
T Consensus       185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence            9999875332 22111 1112233322 223567889999999999764322  2233334555555555555443332 


Q ss_pred             -eCCCeEEEEecC----------CceeeeEEeeecCceeEEEEC--------CCCC--EEEEeeCCCcEEEEecCC
Q 026765          168 -TGNGTVEVLTYP----------SLRPLDTVVAHTAGCYCIAID--------PMGR--YFAVGSADSLVSLWDISE  222 (233)
Q Consensus       168 -~~~~~v~~~~~~----------~~~~~~~~~~~~~~v~~i~~~--------p~~~--~las~s~dg~v~iwd~~~  222 (233)
                       .++..+.+++.+          ..+++..|.||...|...-|-        .+.+  .|+|-|.|..+++|-+.+
T Consensus       265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence             233344444322          246788999999887655442        2222  699999999999998864

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=1e-08  Score=78.15  Aligned_cols=132  Identities=17%  Similarity=0.124  Sum_probs=100.0

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      -+..|.+++|...++++..|+..|.|.+.|+....++......---|...|+++..-...+..|++.+-+|.|++||++.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            36678899998889999999999999999998776655544444468899999887653445667778999999999998


Q ss_pred             Cee---eeeeeecCC---eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765           99 GKC---SQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY  150 (233)
Q Consensus        99 ~~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  150 (233)
                      .++   +++.+.+..   ...+-..+....+++++.|-..+||.++.+......+...
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            777   444443321   1224456667788889999999999999888877766543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=1.9e-09  Score=91.21  Aligned_cols=201  Identities=15%  Similarity=0.255  Sum_probs=137.4

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-eEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-TVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-~i~   92 (233)
                      ++|..|+..-+|++|+-+.++|+.|+..|.|+++++..+.    ..-...+|..+|+-+.=+.++..+|.++++.. ...
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCchHH
Confidence            5778899999999999999999999999999999997533    22245789999999987777776666665555 567


Q ss_pred             EEECCCC-eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----CceeeEEEECCCCCEEEE
Q 026765           93 LWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        93 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  166 (233)
                      +|++... ...+.+.   +--++.|+.....-+.|+......+||+.+..+...+..     .+.-+...|+|+..+++-
T Consensus      1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            9998642 2222221   223466766544445666667789999988776554322     234577889998887653


Q ss_pred             EeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                         ||  .+||.+..+.+..|...... ..=.|+|.|..++..+     .|||+++-..+++.+.|
T Consensus      1248 ---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCccc
Confidence               33  57888766655544332211 1224899999888776     48998876655554443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.2e-06  Score=70.96  Aligned_cols=111  Identities=18%  Similarity=0.364  Sum_probs=83.1

Q ss_pred             CcCcEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCC
Q 026765           65 HADSVDQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRD---DELTILDVRK  139 (233)
Q Consensus        65 h~~~v~~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~  139 (233)
                      ..++|.++.|+|.+..+.+.-|. -..+.|||++-.   ..+. ..++..++-|+|.|++++.++.+   |.+.+||+.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            46899999999998777655444 567899998743   2223 34555678999999999887765   7899999988


Q ss_pred             CeeeeeeecCceeeEEEECCCCCEEEEEeC------CCeEEEEecC
Q 026765          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYP  179 (233)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~  179 (233)
                      .+.+..... ...+-+.|+|+|+++++++.      |+.++||++.
T Consensus       346 ~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  346 RKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             hhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            666654433 23456789999999998875      6788999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.80  E-value=2.4e-05  Score=59.55  Aligned_cols=195  Identities=15%  Similarity=0.160  Sum_probs=119.3

Q ss_pred             EEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        25 ~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      ++.|.+ ++.++++--..+.|..|+....   ......+.   . ...+++...++.++ .+...+ +.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~---~-~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLP---G-PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESS---S-EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecC---C-CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEE
Confidence            567888 6666777667888888887532   22222222   2 66677773334444 455544 5555998886554


Q ss_pred             eeeec--C----CeeEEEECCCCCeEEEEcCC--------CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE-EEe
Q 026765          104 QAELS--G----ENINITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-LTT  168 (233)
Q Consensus       104 ~~~~~--~----~~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (233)
                      .....  .    ....+++.|+|+..++....        +.+..++.. .+.......-...+.++|+++++.++ +-+
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence            44431  1    22458999999977665543        346666655 33222222223478999999999776 456


Q ss_pred             CCCeEEEEecCCc-e-e--eeEEe---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 GNGTVEVLTYPSL-R-P--LDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 ~~~~v~~~~~~~~-~-~--~~~~~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..+.+..+++... . .  ...+.   ......-.++++.+|+++++.-..+.|.++|.+ |+.+.++.
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~  221 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE  221 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence            7888888887421 1 1  11221   111236689999999998888889999999988 87776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.2e-07  Score=73.41  Aligned_cols=211  Identities=13%  Similarity=0.162  Sum_probs=144.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEcCCCC----CEEEEEeC
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHA----DLIATASG   87 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~----~~l~sg~~   87 (233)
                      +.+..|.+.|.+++.+-++..+.|.+. |..+|++|++....-. +...-++   ..   +.|....+    .+.++.-.
T Consensus        47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP---g~---a~wv~skGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP---GF---AEWVTSKGDKISLIAVSLFK  120 (558)
T ss_pred             hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC---Cc---eEEecCCCCeeeeEEeeccc
Confidence            456789999999999999999999887 9999999997543211 1111122   12   22221111    23345566


Q ss_pred             CCeEEEEECCCCeeeeee---eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-Ce-----eeeeeec----------
Q 026765           88 DKTVRLWDARSGKCSQQA---ELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FK-----PIHRRKF----------  148 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~-----~~~~~~~----------  148 (233)
                      ++.+.++|-....|....   .+..++..+.+.|.+..+++....|.|.-|.... .+     ....+++          
T Consensus       121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~  200 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA  200 (558)
T ss_pred             CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence            788999998765432211   1234567788899999999999999999998762 11     1111111          


Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE--------------------------------eeecCc-ee
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV--------------------------------VAHTAG-CY  195 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~-v~  195 (233)
                      .....++.++|++..+..-..|..|+++.+.+++.++.+                                ..|... -.
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~  280 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT  280 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence            234678899999999999999999999998766433221                                112221 23


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       196 ~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      -+.|+..+++|.-|+-=| |+|.++.++++++.+.+
T Consensus       281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK  315 (558)
T ss_pred             eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence            467888899998887666 99999999999999875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.76  E-value=9.8e-08  Score=79.65  Aligned_cols=209  Identities=21%  Similarity=0.336  Sum_probs=127.2

Q ss_pred             EEEEEECcCCC---EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           23 VHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        23 V~~~~~~~~~~---~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      |-.++|+|...   ++++-+. ..-.+|++..... ......+.||..+|+.+-|+|..+.++++++-|-.+..||++..
T Consensus        70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hcceecccCCCCceeEEecCc-chhhhhhhhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            66788888643   5666664 4446898865333 33345678999999999999999999999999999999999987


Q ss_pred             eeeee-ee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeeec-CceeeEEEECCC-CCEEEEEeCCCeEE
Q 026765          100 KCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF-GYEVNEIAWNMT-GEMFFLTTGNGTVE  174 (233)
Q Consensus       100 ~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~v~  174 (233)
                      ..... +. -......+.|+.....+.+.+....+.+||++.+. ++...+. -..++.+.|..- ...++..+.|++++
T Consensus       148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk  227 (1081)
T KOG0309|consen  148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK  227 (1081)
T ss_pred             CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence            53221 11 12233457776544444555556679999998643 4444332 234555555432 33567778899999


Q ss_pred             EEecCCceeeeE-EeeecCceeEEEECCCCC-----------EEEEeeCCCcEEEEecCCc-EEEEeeecCC
Q 026765          175 VLTYPSLRPLDT-VVAHTAGCYCIAIDPMGR-----------YFAVGSADSLVSLWDISEM-LCVRTFTKLE  233 (233)
Q Consensus       175 ~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~-----------~las~s~dg~v~iwd~~~~-~~i~~~~~~~  233 (233)
                      .|+......... ......+|+--.+-|-|.           .+----.+..-..||..++ .+|++|.+|+
T Consensus       228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~  299 (1081)
T KOG0309|consen  228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD  299 (1081)
T ss_pred             eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcc
Confidence            999864322111 111233444444444433           1111112223344554333 5789998874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=5.2e-08  Score=77.42  Aligned_cols=162  Identities=22%  Similarity=0.353  Sum_probs=115.5

Q ss_pred             EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECC--CCCeEEEEcCCCcEEEEE
Q 026765           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKP--DGTHIAVGNRDDELTILD  136 (233)
Q Consensus        61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~l~~~~~d~~i~i~d  136 (233)
                      .|.+|.++|..+.|+..+ ..|+||+.|.+|.+||...+.....+....  .+.-..|-|  +...+++++.||.+++-.
T Consensus       137 kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             cccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            467899999999999875 678999999999999987776544433221  122234555  346788999999998876


Q ss_pred             cCCCeeee----eeecCceeeEEEECCCCC-EEEEEeCCCeEEEEecCCceeeeEEee---ecC---ceeEEEECCCCC-
Q 026765          137 VRKFKPIH----RRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVA---HTA---GCYCIAIDPMGR-  204 (233)
Q Consensus       137 ~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~---~v~~i~~~p~~~-  204 (233)
                      +.......    ..++..++..++.-|... -+.+.++|+.+.-+|++...+...+..   +..   ..++|+.+|... 
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            54322221    123445677788777654 467778899999999887665544432   333   457899999776 


Q ss_pred             EEEEeeCCCcEEEEecCCc
Q 026765          205 YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       205 ~las~s~dg~v~iwd~~~~  223 (233)
                      .+|+|+.|..++|||....
T Consensus       296 ~faVgG~dqf~RvYD~R~~  314 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRI  314 (559)
T ss_pred             ccccCChhhhhhhhcccch
Confidence            7999999999999998643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=4.4e-06  Score=70.50  Aligned_cols=206  Identities=17%  Similarity=0.176  Sum_probs=138.2

Q ss_pred             ceeeeCccccEEEEEECcCC------------CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC---
Q 026765           13 SREYTGHKKKVHSVAWNCTG------------TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK---   77 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~------------~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---   77 (233)
                      ++.+.-|...|+.+.|.|..            -.||++.-.|.|.+||.....    ....+..|.+++..++|-+.   
T Consensus        48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s----~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS----VINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh----hhhhhcCCCcchhheeeeeccCc
Confidence            45677899999999998731            257888889999999986422    22356678889999998653   


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCee-EEEECC-CCCeEEEEcCCCcEEEEEcCCC----eeeeee--ecC
Q 026765           78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKP-DGTHIAVGNRDDELTILDVRKF----KPIHRR--KFG  149 (233)
Q Consensus        78 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~----~~~~~~--~~~  149 (233)
                      ...+|+.-....++.+|+..+|+..........+. ++.++| |.+.+..-+..|.+.+.+.-..    .+.+..  ...
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence            23567777778899999999998655444444433 466777 5566766666676666653211    011111  100


Q ss_pred             c------------------e---------eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC
Q 026765          150 Y------------------E---------VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM  202 (233)
Q Consensus       150 ~------------------~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  202 (233)
                      +                  .         ...++|+|.-+.++...-...+.++|++-..++....-..+.+.-+.+-|+
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~  283 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD  283 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence            0                  0         112456777666777777778899998766666665555555566777776


Q ss_pred             C--CEEEEeeCCCcEEEEecCC
Q 026765          203 G--RYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       203 ~--~~las~s~dg~v~iwd~~~  222 (233)
                      .  ..|.+.-.||.+.||-.+.
T Consensus       284 ~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEeec
Confidence            6  4688999999999997665

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=2.5e-05  Score=58.88  Aligned_cols=186  Identities=18%  Similarity=0.188  Sum_probs=114.9

Q ss_pred             cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eec
Q 026765           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELS  108 (233)
Q Consensus        30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~  108 (233)
                      +++..+++++.++.+..||..+..  ......+.+......  ..  .+ ..++.+..++.+..+|..+++..... ...
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~--~~--~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~  106 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGK--VLWRFDLPGPISGAP--VV--DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTS  106 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSE--EEEEEECSSCGGSGE--EE--ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCC--EEEEeecccccccee--ee--cc-cccccccceeeeEecccCCcceeeeecccc
Confidence            357778888899999999986432  222233322211111  11  22 34566778889999999999876653 221


Q ss_pred             CC----eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee------------eEEEECCCCCEEEEEeCCCe
Q 026765          109 GE----NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV------------NEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus       109 ~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~  172 (233)
                      .+    .........+..++++..++.+..+|+++++.+.......+.            ..+.+. ++ .+.+...++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~  184 (238)
T PF13360_consen  107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR  184 (238)
T ss_dssp             SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred             ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence            11    111222233778888888999999999999887666542211            122222 33 7777777775


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      +..+|..+++..-...  ...+..+ ..+.+..|+.++.++.|..||+++++.+=
T Consensus       185 ~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  185 VVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            4444988887553221  2222221 44677888888899999999999998764

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.72  E-value=5.8e-06  Score=73.73  Aligned_cols=199  Identities=16%  Similarity=0.219  Sum_probs=125.9

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      ..+.|.++.|-++...++.+..+|.|.+...+.....  ...+.-| -...|.+++|+|++ .+|+....++++.+-+-.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEecc
Confidence            3567999999999999999999999999833221111  1122222 45689999999985 567677777777654221


Q ss_pred             ---------------CCeee--------eee-------------------------eecCCeeEEEECCCCCeEEEEcC-
Q 026765           98 ---------------SGKCS--------QQA-------------------------ELSGENINITYKPDGTHIAVGNR-  128 (233)
Q Consensus        98 ---------------~~~~~--------~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~-  128 (233)
                                     ..+.+        .++                         ........++|..||.++|+.+- 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence                           00000        000                         01112345889999999997764 


Q ss_pred             --C---CcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC--CCeEEEEecCCceeeeEEe----eecCceeE
Q 026765          129 --D---DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG--NGTVEVLTYPSLRPLDTVV----AHTAGCYC  196 (233)
Q Consensus       129 --d---~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~----~~~~~v~~  196 (233)
                        .   ..+++|+-+ +....... ...--..++|.|.|+++++...  +...-++-.+++.....|.    .....|..
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence              2   468899854 33322211 1222356899999999988764  2222233334444444433    34567899


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          197 IAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       197 i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ++|++++..||.--.|. |.+|-...
T Consensus       310 l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             EEECCCCCEEEEEecCC-ceEEEeeC
Confidence            99999999999988666 99997653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=5e-06  Score=70.78  Aligned_cols=201  Identities=10%  Similarity=0.156  Sum_probs=128.3

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe-----EEEEEC
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-----VRLWDA   96 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~-----i~iwd~   96 (233)
                      .|+|  |++.+..+|-|+.||.|.+.+-..    . ....+..+...+...-+..++..+|++-+.|+.     ++|||+
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~----~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSSF----Q-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecccc----e-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            5555  458899999999999987765321    1 112345555553333344455678888777654     899998


Q ss_pred             CCC------eeee---eeee-----cCCeeEEEECCCCCeEEEEcCCCcEEEEEc---CC--CeeeeeeecCceeeEEEE
Q 026765           97 RSG------KCSQ---QAEL-----SGENINITYKPDGTHIAVGNRDDELTILDV---RK--FKPIHRRKFGYEVNEIAW  157 (233)
Q Consensus        97 ~~~------~~~~---~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~--~~~~~~~~~~~~~~~~~~  157 (233)
                      ..-      .+..   ....     +.+...++.+.+-+.+++|-.+|.|..+.-   |.  .+.......+.+|+.+.+
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            532      2331   1111     122345788888889999999999988852   11  111112223568999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCcee-eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          158 NMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..+++..+-......|..|......+ ...+..|+.+.+|.++++....+++|+ +..+.+|+.....+.-+|.
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            98888844444455688887763222 333667888899999987655455444 4569999998776666665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.72  E-value=1.3e-05  Score=71.52  Aligned_cols=199  Identities=17%  Similarity=0.281  Sum_probs=122.1

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEe----ccc------CCCC--c-------eeeEEEec---------------
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWH----IEP------HGHG--K-------VKDIELRG---------------   64 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~----~~~------~~~~--~-------~~~~~~~~---------------   64 (233)
                      -...|.|++||||+..|+-+..++++.+-.    +-.      ...+  .       .+..++.|               
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            467899999999999998888888876643    210      0000  0       00011111               


Q ss_pred             ---------CcCcEEEEEEcCCCCCEEEEEeC---C---CeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcC
Q 026765           65 ---------HADSVDQLCWDPKHADLIATASG---D---KTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNR  128 (233)
Q Consensus        65 ---------h~~~v~~~~~~~~~~~~l~sg~~---d---~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~  128 (233)
                               +.+.-..++|-.+|. ++|..+-   .   ..+|||+-. |......+ ..+-...++|.|.|+.||+...
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             CccccCccccCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence                     223455788988764 5544432   2   578999965 54433222 2333456899999999998765


Q ss_pred             ---CCcEEEEEcCCCeeeeeee-----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCce-eeeEEe--eecCceeEE
Q 026765          129 ---DDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVV--AHTAGCYCI  197 (233)
Q Consensus       129 ---d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~~v~~i  197 (233)
                         ...|.+|.- ++-......     ....+..+.|+.++..+++...+. +++|...+.. .++...  .....+..+
T Consensus       277 ~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~  354 (928)
T PF04762_consen  277 LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV  354 (928)
T ss_pred             cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence               234666663 222222222     234688999999999999988665 9999876644 222211  122334559


Q ss_pred             EECCCCC-EEEEeeCCCcEEEEecC
Q 026765          198 AIDPMGR-YFAVGSADSLVSLWDIS  221 (233)
Q Consensus       198 ~~~p~~~-~las~s~dg~v~iwd~~  221 (233)
                      .|+|... .|...+.+|.+..++..
T Consensus       355 ~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  355 KWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEE
Confidence            9999654 47777777777666643

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.70  E-value=5.3e-09  Score=85.61  Aligned_cols=201  Identities=19%  Similarity=0.277  Sum_probs=129.2

Q ss_pred             ccccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC----CCeEE
Q 026765           19 HKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVR   92 (233)
Q Consensus        19 H~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~----d~~i~   92 (233)
                      ...-+.|++++.+.+  .++.|..+|.|-+=.+...-..  .....++|...+++++|++-+.+.||.|-.    |..+.
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            355678888876554  6788889999988765321111  112357888999999999987788877633    56789


Q ss_pred             EEECCCC--eeeeeeeecC----CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECC-CCCEEE
Q 026765           93 LWDARSG--KCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM-TGEMFF  165 (233)
Q Consensus        93 iwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  165 (233)
                      |||+.++  .+.....+.+    ....++|..+.+.+.+|....++.++|+|........-....+..+...| .+++++
T Consensus       133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence            9999776  2222222211    12357777787888889989999999998422111111112345566677 566666


Q ss_pred             EEeCCCeEEEEe-cCCce-eeeEEe----eecCceeEEEECCCCC-EEEEeeCC-CcEEEEecCC
Q 026765          166 LTTGNGTVEVLT-YPSLR-PLDTVV----AHTAGCYCIAIDPMGR-YFAVGSAD-SLVSLWDISE  222 (233)
Q Consensus       166 ~~~~~~~v~~~~-~~~~~-~~~~~~----~~~~~v~~i~~~p~~~-~las~s~d-g~v~iwd~~~  222 (233)
                      ... +|.+.+|| ....+ ++..+.    .....+..++|.|..+ .+++.+.| ++|+.+|+..
T Consensus       213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            655 99999999 33322 221111    1223488999999654 56777765 7899999863

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.68  E-value=9.9e-07  Score=75.35  Aligned_cols=179  Identities=15%  Similarity=0.214  Sum_probs=123.0

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecC-cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  110 (233)
                      ...++-|+.-..+...|+....     ..+.... ...|.-+..   +.+++++|...|+|.+-|.++-+..+++..+..
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~-----e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEK-----ETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             Ccceeecchhhheeeeecccce-----eeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence            3455566666666666665321     1111111 123555554   346788999999999999998887777655433


Q ss_pred             eeEEEECCCCCeEEEEcC---------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCC-CEEEEEeCCCeEEEEec--
Q 026765          111 NINITYKPDGTHIAVGNR---------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTY--  178 (233)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~--  178 (233)
                      . -..|+-.|+.|++++.         |.-+++||+|+.+.+.-+.+.....-+.|+|.- ..+++.+..|...+.|.  
T Consensus       219 s-iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  219 S-ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             c-eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccc
Confidence            2 2456778899998876         445789999998877666665555667777764 45677888899999883  


Q ss_pred             -CCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          179 -PSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       179 -~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                       .+. ..+..+...+..+..+.++++++.||.|..+|.|.+|-
T Consensus       298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             222 22333344456688999999999999999999999997

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.64  E-value=1.5e-05  Score=59.30  Aligned_cols=182  Identities=13%  Similarity=0.135  Sum_probs=118.4

Q ss_pred             EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCc--EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee----eeeeee
Q 026765           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS--VDQLCWDPKHADLIATASGDKTVRLWDARSGKC----SQQAEL  107 (233)
Q Consensus        34 ~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~  107 (233)
                      .+.-++.|.++|+.+++-.....      .-|...  +..++++++ +.++++.+....|..|.+.....    ......
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~------~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t  202 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKF------AVHNQNLTQNSLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT  202 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccc------eeeccccceeeeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence            46778889999999886432211      123332  778899987 46888888889999998865432    122223


Q ss_pred             cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee------cCceeeEEEECCCCC--EEEEEeCCCeEEEEecC
Q 026765          108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK------FGYEVNEIAWNMTGE--MFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~  179 (233)
                      .....+..|+.....+|++..||.+.|||+|.....+...      +...+..+.|++-|.  ++...-.-+.+++.|.+
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            4556789999999999999999999999998654322211      234577888887553  45556667889999988


Q ss_pred             CceeeeEEee-------ecC-ceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          180 SLRPLDTVVA-------HTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       180 ~~~~~~~~~~-------~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +.+-...+..       |.. .|+.-.|+.++.-..+.+++. +.=|++.+.
T Consensus       283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr  333 (344)
T KOG4532|consen  283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR  333 (344)
T ss_pred             cCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence            7654433322       222 255566666665544444332 344555543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.1e-06  Score=66.15  Aligned_cols=81  Identities=15%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             eeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      .+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..    ....+..+ ..+-+++|..+..++|+.|..+|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            4568899999999999987 78889999999999997633    12233345 788999999999999999999999999


Q ss_pred             EECCCCe
Q 026765           94 WDARSGK  100 (233)
Q Consensus        94 wd~~~~~  100 (233)
                      ||++..+
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.63  E-value=9e-05  Score=56.38  Aligned_cols=178  Identities=19%  Similarity=0.206  Sum_probs=109.1

Q ss_pred             EEEEEEC-cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--c-CcCcEEEEEEcCCCCCEEEEEeCC--------Ce
Q 026765           23 VHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--G-HADSVDQLCWDPKHADLIATASGD--------KT   90 (233)
Q Consensus        23 V~~~~~~-~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~~l~sg~~d--------~~   90 (233)
                      ...+++. +++ .|+.+..++ +.++|+.....  .......  . .....+.+++.|++ ++.++-...        +.
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~--~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV--TVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEE--EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcE--EEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccc
Confidence            5566776 554 444445444 45557654221  1112221  1 23467899999986 466665543        45


Q ss_pred             EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCee-ee------eeecCc-eeeEEEECCCC
Q 026765           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKP-IH------RRKFGY-EVNEIAWNMTG  161 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~~------~~~~~~-~~~~~~~~~~~  161 (233)
                      |..++.. ++.......-.....++|+|+++.|. +-+..+.|..+++..... +.      ...... ....+++..+|
T Consensus       117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            6666766 44433333334456799999998775 566778888888853221 11      111111 36789999999


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE-CCCCCEEE
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI-DPMGRYFA  207 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~-~p~~~~la  207 (233)
                      +++++....+.|.+++.+ ++.+..+......+++++| .|+.+.|.
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            999988899999999976 7777777665568899999 46655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.61  E-value=1.2e-05  Score=65.06  Aligned_cols=145  Identities=14%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeecCCe--------eEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELSGEN--------INITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGY  150 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  150 (233)
                      .++.+..++.+..+|.++++...........        ..+.-+|  .+..+.+++.++.+..+|+.+++.+.......
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~  271 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS  271 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence            5667888899999999888754432221100        0000011  34577778889999999998877665544221


Q ss_pred             eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      . ..  ....++.+++++.+|.+..+|..+++.+-........ ..+...  .+..|.+++.||.|.++|..+++.+.++
T Consensus       272 ~-~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       272 Y-QG--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             c-cC--ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            1 11  1235677888889999999999888766443221111 111122  3568899999999999999999988776


Q ss_pred             e
Q 026765          230 T  230 (233)
Q Consensus       230 ~  230 (233)
                      +
T Consensus       347 ~  347 (377)
T TIGR03300       347 K  347 (377)
T ss_pred             E
Confidence            5

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=2.2e-06  Score=72.32  Aligned_cols=151  Identities=13%  Similarity=0.104  Sum_probs=109.1

Q ss_pred             cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee
Q 026765           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (233)
Q Consensus        66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (233)
                      .+.+++++++   .++++-|.-+|.|.+++....-  .....+.+.     ..+|.++++|+.||++.|..+.+.+..+.
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3456677765   3678899999999999875432  111111111     56899999999999999999988888888


Q ss_pred             eecCceeeEEEECCC-----CCEEEEEeCCCeEEEEecCC--ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          146 RKFGYEVNEIAWNMT-----GEMFFLTTGNGTVEVLTYPS--LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       146 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                      ..+..++.+++++|+     .+.+++|+..| +.++.-.=  .+.-..+....++|.+|.|.  |+++|=++.+| |+||
T Consensus       109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy  184 (846)
T KOG2066|consen  109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY  184 (846)
T ss_pred             EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence            888889999999998     56788888888 55553211  11111344456789999995  66888777666 9999


Q ss_pred             ecCCcEEEEeee
Q 026765          219 DISEMLCVRTFT  230 (233)
Q Consensus       219 d~~~~~~i~~~~  230 (233)
                      |......+...+
T Consensus       185 d~~~~~~l~~i~  196 (846)
T KOG2066|consen  185 DTPTRQRLTNIP  196 (846)
T ss_pred             eccccceeeccC
Confidence            999887765543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.60  E-value=0.00014  Score=57.70  Aligned_cols=171  Identities=12%  Similarity=0.043  Sum_probs=97.5

Q ss_pred             CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe---------CCCeEEEEECCCCeeeeeeeecCCe-
Q 026765           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKCSQQAELSGEN-  111 (233)
Q Consensus        42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~---------~d~~i~iwd~~~~~~~~~~~~~~~~-  111 (233)
                      ++|.|.|.....  .+.  .++.-..+- .+ ++|++..+.++.+         .+..|.+||..+.+..........+ 
T Consensus        27 ~~v~ViD~~~~~--v~g--~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGR--VLG--MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCE--EEE--EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence            788888876421  111  122111222 24 8898877666777         6899999999999887776654332 


Q ss_pred             -------eEEEECCCCCeEEEEcC--CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-c
Q 026765          112 -------INITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-L  181 (233)
Q Consensus       112 -------~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  181 (233)
                             ..++++|||+++++...  +..+.+.|+.+.+.+.....+....-...+.+.  +.+.+.||......+.. +
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCC
Confidence                   26889999999987763  578999999998887766653221111121111  12223444433332221 1


Q ss_pred             eee-eEEe-eec--CceeEE-EECC-CCCEEEEeeCCCcEEEEecC
Q 026765          182 RPL-DTVV-AHT--AGCYCI-AIDP-MGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       182 ~~~-~~~~-~~~--~~v~~i-~~~p-~~~~las~s~dg~v~iwd~~  221 (233)
                      +.. .... -+.  ..+..- .+.+ +|+++....+ |+|.+-|+.
T Consensus       179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecC
Confidence            110 1100 011  111000 3455 7887776666 999999953

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.58  E-value=2.8e-05  Score=62.67  Aligned_cols=194  Identities=15%  Similarity=0.206  Sum_probs=122.2

Q ss_pred             ccEEEEEECcCCC--EEEE-----EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe-------
Q 026765           21 KKVHSVAWNCTGT--KLAS-----GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-------   86 (233)
Q Consensus        21 ~~V~~~~~~~~~~--~l~s-----~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~-------   86 (233)
                      ..|....|+|.++  .||.     .+.++++++|.+....  .+....+..  ..-..+.|++.+..+++-.-       
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnK  249 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNK  249 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEe--ecccEEEEecCCceEEEEEEEeeeccc
Confidence            4567778888743  3443     4678899999886322  222222211  11124667766554433211       


Q ss_pred             ---CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCC
Q 026765           87 ---GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (233)
Q Consensus        87 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (233)
                         ....+.+++++...+.......+++...+|.|.++.+++.+  ....+.++|++..  +........-+.+.|+|.+
T Consensus       250 syfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~  327 (561)
T COG5354         250 SYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHE  327 (561)
T ss_pred             ceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcc
Confidence               12456777777554444435567788899999998877544  6778999998865  2222333456778899999


Q ss_pred             CEEEEEeC---CCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEee------CCCcEEEEecCC
Q 026765          162 EMFFLTTG---NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGS------ADSLVSLWDISE  222 (233)
Q Consensus       162 ~~~~~~~~---~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s------~dg~v~iwd~~~  222 (233)
                      ++++.++=   .|.+.+|+.... ..+..+.+-  ...-+.|+|+++++.+..      .|..|+|||+..
T Consensus       328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            99988653   588999987543 233244332  224468999999876654      478899999864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=1.3e-05  Score=65.75  Aligned_cols=109  Identities=16%  Similarity=0.251  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCCEEEEE----eCCCeE----EEEECCCCeee----eeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765           70 DQLCWDPKHADLIATA----SGDKTV----RLWDARSGKCS----QQAELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (233)
Q Consensus        70 ~~~~~~~~~~~~l~sg----~~d~~i----~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (233)
                      .++.|+...++.+.+-    +.+|.+    .+|+...++..    ........+.+++++|+...++.|+.||.+.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            4566766555554432    344443    45776554322    23445667889999999999999999999999997


Q ss_pred             CCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  179 (233)
                      .... ....+....++.++|||+|..+++++..|.+.+||..
T Consensus       289 ~~~~-t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  289 TRGV-TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCCe-eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            6543 2233555678899999999999999999999999963

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.9e-05  Score=66.82  Aligned_cols=154  Identities=14%  Similarity=0.165  Sum_probs=97.0

Q ss_pred             eeeCccccEEEEEECc-------------CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC----
Q 026765           15 EYTGHKKKVHSVAWNC-------------TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK----   77 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~-------------~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----   77 (233)
                      .|..|.+.|+-..+.-             +|++++|||.||+|.|-.+.+..  ......   -..++.+++++|+    
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~--~~~~~d---f~rpiksial~Pd~~~~  127 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDD--EITQYD---FKRPIKSIALHPDFSRQ  127 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCc--cceeEe---cCCcceeEEeccchhhh
Confidence            3556888877766544             49999999999999998765422  122222   3468889999987    


Q ss_pred             CCCEEEEEeCCCeEEEEEC---CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc----
Q 026765           78 HADLIATASGDKTVRLWDA---RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY----  150 (233)
Q Consensus        78 ~~~~l~sg~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----  150 (233)
                      ..+.+++||..| +.++.-   .....+......+.+.++.|.  |+++|=+. |-.+++||+...+.+...+...    
T Consensus       128 ~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R  203 (846)
T KOG2066|consen  128 QSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVR  203 (846)
T ss_pred             hhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCC
Confidence            345678999888 666642   122222223345677888885  45666555 4458999998877776655432    


Q ss_pred             ---eeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765          151 ---EVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       151 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  179 (233)
                         -...+.|.++.+.++.-+  .+|++...+
T Consensus       204 ~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~  233 (846)
T KOG2066|consen  204 PELFPPHLHWQDEDRLVIGWG--DSVKICSIK  233 (846)
T ss_pred             cccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence               134677766554443333  245555443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.53  E-value=1e-06  Score=65.06  Aligned_cols=73  Identities=26%  Similarity=0.451  Sum_probs=57.8

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-e-ecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCC
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-E-LSGENINITYKP-DGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~  139 (233)
                      +.|.+++-+|..++++++|+.||.+-+||.+........ . .+.+...+-|+| ++..|+++++||.+.-||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            359999999999999999999999999999886432221 1 234456688988 568899999999999999653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.52  E-value=1.8e-05  Score=63.79  Aligned_cols=140  Identities=16%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             cCcCcEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCC
Q 026765           64 GHADSVDQLCWDPKHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRK  139 (233)
Q Consensus        64 ~h~~~v~~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~  139 (233)
                      .-.++|...+|.|.+..+. ++|-.+..+.++|++..  ............+.|+|.+++++.++-|   |.+.+||...
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence            4578999999999877654 45567888999999876  2323334445568899999999987766   6789999765


Q ss_pred             CeeeeeeecCceeeEEEECCCCCEEEEEeC------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      ....-....+....-+.|+|+++++.+...      |..+.+|+.......        ..+-+.|.|.+++..+.|.+.
T Consensus       350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence            433322222334555789999999988754      677888886432211        334567777777766655544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.50  E-value=1.7e-05  Score=65.03  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=79.4

Q ss_pred             cCCeeEEEECC-CCCeEEEE----cCCCc----EEEEEcCCCe--e--eeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765          108 SGENINITYKP-DGTHIAVG----NRDDE----LTILDVRKFK--P--IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus       108 ~~~~~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ...+.++.|+. ++..+.+.    +.++.    -.+|+....+  .  +.....+..+.+++++|+.+.++.|+.||.+.
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence            33455666765 33334332    22332    3456654322  2  23344566788999999999999999999999


Q ss_pred             EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +||.....  ..+....-.++.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus       285 LyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99986542  233344556789999999999999999999999999744

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=2.3e-05  Score=63.89  Aligned_cols=177  Identities=18%  Similarity=0.314  Sum_probs=112.8

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-----------CCeE
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----------DKTV   91 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-----------d~~i   91 (233)
                      -+-+.|||-|.+|+|==. .-|.+|-=..  ..++.  ++ .|. .|..+.|+|.. ++|++=+.           ...+
T Consensus       213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~--f~r~~--RF-~Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHK-QGIALWGGES--FDRIQ--RF-YHP-GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeeEEecCCceEEEEEec-cceeeecCcc--HHHHH--hc-cCC-CceeeecCCcc-ceEEEecCCccccCcccCCCceE
Confidence            467899999999998654 4577884321  11111  12 353 47778999975 56666533           2578


Q ss_pred             EEEECCCCeeeeeeeecCC---ee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEE
Q 026765           92 RLWDARSGKCSQQAELSGE---NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (233)
                      +|||+++|...+.+.....   .. -..|+.|++++|.-.. ..|.||+..+..++...... ..|....|+|.++.++.
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            9999999988777665211   12 3689999999986665 46889987765554332221 35778899999998886


Q ss_pred             EeCC-----CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765          167 TTGN-----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       167 ~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                      -+..     ..+.+...++.+.+++-..|.-.=-.+-|..+|.+|+.
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence            6542     34556666666666554433211113456677777764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.48  E-value=1.4e-06  Score=64.45  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=60.4

Q ss_pred             cEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           22 KVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        22 ~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      .|++++-+|.. ..++.|+.||.+-+||.....  .. .-.++.|+.++..+-|+|.++..|++++.||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p-~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MP-VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc--ch-HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            39999998865 566778889999999986431  11 1136789999999999999999999999999999999865

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=2e-05  Score=66.14  Aligned_cols=135  Identities=18%  Similarity=0.144  Sum_probs=95.2

Q ss_pred             CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC--------------------------------------
Q 026765           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR--------------------------------------  128 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------------------  128 (233)
                      ..+.+.+.|..+.+...+....+....+.++|+|+++++.+.                                      
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~  292 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT  292 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence            345566667766555555555555556788888888876651                                      


Q ss_pred             --CCcEEEEEcCC-----CeeeeeeecCceeeEEEECCCCCEEEEEeC-CCeEEEEecCCcee------------eeEEe
Q 026765          129 --DDELTILDVRK-----FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRP------------LDTVV  188 (233)
Q Consensus       129 --d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~------------~~~~~  188 (233)
                        ++.+.++|.++     ...+..+..+.....+.++|||+++++++. ++++.++|....+.            ..+..
T Consensus       293 V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        293 IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence              23466777666     344445556667788999999999988765 89999999876442            22222


Q ss_pred             eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      . +......+|+++|..+.|---|..|..||+..
T Consensus       373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            2 33445789999999889999999999999986

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.44  E-value=0.00014  Score=59.02  Aligned_cols=187  Identities=17%  Similarity=0.104  Sum_probs=105.2

Q ss_pred             CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC
Q 026765           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (233)
Q Consensus        31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  110 (233)
                      .+..++.++.++.|..+|..+..  .+....+.+.  .......  .+ ..++.++.++.+..+|..+++........+.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~--~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGK--RLWRVDLDER--LSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELWRAKLSSE  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCc--EeeeecCCCC--cccceEE--cC-CEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence            36788888889999888875432  2222222221  1112222  22 4566788899999999999887655444433


Q ss_pred             eeE-EEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceee------EEEECCCCCEEEEEeCCCeEEEEecCCcee
Q 026765          111 NIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN------EIAWNMTGEMFFLTTGNGTVEVLTYPSLRP  183 (233)
Q Consensus       111 ~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  183 (233)
                      ... ...  .+..++.+..++.+..+|.++++.+...+...+..      ....  .+..++.+..++.+..+|..+++.
T Consensus       137 ~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       137 VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP  212 (377)
T ss_pred             eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence            221 111  24567778889999999998887765544322111      0011  134667777888888888877655


Q ss_pred             eeEEeee-cC------ceeEEEECC--CCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          184 LDTVVAH-TA------GCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       184 ~~~~~~~-~~------~v~~i~~~p--~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      +-..... ..      ....+.-+|  .+..+..++.+|.+..||+++++.+-+
T Consensus       213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~  266 (377)
T TIGR03300       213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK  266 (377)
T ss_pred             eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence            4322110 00      000000011  234555566667777777766655443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.41  E-value=2.8e-05  Score=58.62  Aligned_cols=142  Identities=19%  Similarity=0.198  Sum_probs=95.1

Q ss_pred             CCeEEEEECCCCeeeeeeeecCCee-EE-EECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765           88 DKTVRLWDARSGKCSQQAELSGENI-NI-TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (233)
                      +++|..||.++++............ .+ ...+++.+++++..++.+..||..+++.+.......++...- ...+..++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence            6889999999998776665422111 12 123356677778899999999998888876665433221111 22456677


Q ss_pred             EEeCCCeEEEEecCCceeeeEE-eeecC---ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTV-VAHTA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~-~~~~~---~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +++.++.+..+|..+++.+-.. .....   ..........+..++.+..++.|..+|+++|+.+-.++
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence            7778889999999898887763 32211   11122233337788888889999999999999877664

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.40  E-value=0.00047  Score=53.27  Aligned_cols=201  Identities=20%  Similarity=0.192  Sum_probs=112.5

Q ss_pred             EEEEEECc-CCCEEEEEeCCCCE-EEEecccCCCCce----eeEEEecCcCcEEEEEEcCCCCCEEEE----EeCCCeEE
Q 026765           23 VHSVAWNC-TGTKLASGSVDQTA-RVWHIEPHGHGKV----KDIELRGHADSVDQLCWDPKHADLIAT----ASGDKTVR   92 (233)
Q Consensus        23 V~~~~~~~-~~~~l~s~~~D~~v-~vW~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s----g~~d~~i~   92 (233)
                      ...++.+| ....++-+-.-|+- .+||.........    ....|.||      -.|++++..++++    ....|.|-
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEE
Confidence            34566666 34445555555543 4566543211000    00124455      3688887544433    24468999


Q ss_pred             EEECC-CCeeeeeeeecC-CeeEEEECCCCCeEEEEcC------------------CCcEEEEEcCCCeeeeeeec----
Q 026765           93 LWDAR-SGKCSQQAELSG-ENINITYKPDGTHIAVGNR------------------DDELTILDVRKFKPIHRRKF----  148 (233)
Q Consensus        93 iwd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~~----  148 (233)
                      |||.. .-+.+.++...+ .+-.+.+.||++.|+++..                  +..+...|.++++.+.+...    
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99998 333334443322 1234778999977766532                  22455566666666655333    


Q ss_pred             -CceeeEEEECCCCCEEEEEeCCCeE-----EEEecCCceeeeEEe-------eecCceeEEEECCCCCEEEEee-CCCc
Q 026765          149 -GYEVNEIAWNMTGEMFFLTTGNGTV-----EVLTYPSLRPLDTVV-------AHTAGCYCIAIDPMGRYFAVGS-ADSL  214 (233)
Q Consensus       149 -~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~-------~~~~~v~~i~~~p~~~~las~s-~dg~  214 (233)
                       ...+..+++..+|..++..-..|.-     .+...+..+.+..+.       ....-+-+|++++++.++++.| ..+.
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence             2357888888887665544332211     111111222222111       1234577999999998876555 6788


Q ss_pred             EEEEecCCcEEEEee
Q 026765          215 VSLWDISEMLCVRTF  229 (233)
Q Consensus       215 v~iwd~~~~~~i~~~  229 (233)
                      +.+||..+++.+...
T Consensus       241 ~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  241 VAVWDAATGRLLGSV  255 (305)
T ss_pred             EEEEECCCCCEeecc
Confidence            999999999887654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.38  E-value=6e-06  Score=62.70  Aligned_cols=161  Identities=17%  Similarity=0.317  Sum_probs=107.4

Q ss_pred             eee-eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-----CcEEEEEEcCCCCCEEEEEeC
Q 026765           14 REY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        14 ~~~-~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      +.| ..|.--|+++.|+.|...++|+. |=.|-+|+++--. +....+.++.|.     ..|++..|+|....++.-.+.
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeecc-ceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            345 57999999999999999998876 7889999886422 223334455553     468899999988777777788


Q ss_pred             CCeEEEEECCCCee------eeeeeec-----------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeeecC
Q 026765           88 DKTVRLWDARSGKC------SQQAELS-----------GENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFG  149 (233)
Q Consensus        88 d~~i~iwd~~~~~~------~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~  149 (233)
                      .|.|++-|++....      .......           ..+..+.|+++|+++++-.. -++++||.+..+ ++......
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            99999999985421      0111111           12335889999999875443 479999987643 33333221


Q ss_pred             ----------------ceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          150 ----------------YEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       150 ----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                                      ..-..+.|+.+.+.+++|+-++..-++-
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence                            1234567777777777777666555554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.00073  Score=54.87  Aligned_cols=202  Identities=20%  Similarity=0.224  Sum_probs=138.3

Q ss_pred             EEEEECcCCCE-EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCe
Q 026765           24 HSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGK  100 (233)
Q Consensus        24 ~~~~~~~~~~~-l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~  100 (233)
                      ..++.++.++. .++...+..|.+.|.....   .......+.  .-..++++|++..+.++-.  .++++.+.|-.+.+
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            35677788874 4555567899998854321   111112222  5567889998876666666  47899999988888


Q ss_pred             eeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeeee-----eeecCceeeEEEECCCCCEEEEEeCC---C
Q 026765          101 CSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH-----RRKFGYEVNEIAWNMTGEMFFLTTGN---G  171 (233)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~  171 (233)
                      .............++++|+|..+.+.. .++.+.+.|........     ..........+.++++++.+.+....   +
T Consensus       152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            777744444457899999999776655 67889999976554442     12233445678899999987776554   5


Q ss_pred             eEEEEecCCceeeeE-Ee-eecCceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEeeec
Q 026765          172 TVEVLTYPSLRPLDT-VV-AHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~-~~-~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+...|..+...... .. +.. ....+..+|+|.++.... ..+.+.+-|......+.++..
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            888888877665544 11 222 456789999999887774 458899999988777766543

>smart00320 WD40 WD40 repeats

Probab=98.34  E-value=1.4e-06  Score=45.00  Aligned_cols=37  Identities=38%  Similarity=0.539  Sum_probs=33.4

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH   48 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~   48 (233)
                      ....+..|...|+++.|++.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456778999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=1.8e-05  Score=67.96  Aligned_cols=146  Identities=15%  Similarity=0.238  Sum_probs=105.1

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC---------CCeEEE
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---------DKTVRL   93 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~---------d~~i~i   93 (233)
                      |+-+.  ..++.+.+|...|+|.+-|.+...    ..-++.+|++.+.++...   +++|+++|.         |..|+|
T Consensus       180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~----~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFE----TIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             eEEEE--ecCcEEEeecccceEEeecCCcCc----eeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhh
Confidence            44444  346889999999999998876432    223678999999987764   357777765         567899


Q ss_pred             EECCCCeeeeeeeecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCC-eee----eeeecCceeeEEEECCCCCEEEEE
Q 026765           94 WDARSGKCSQQAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKF-KPI----HRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      ||+|.-+......++....-+.|.|. ...+++++..|...+-|..+. ++.    +....+..+..++++++++.++.+
T Consensus       251 YDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  251 YDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             hhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe
Confidence            99998766555555544445777776 356888899999999884321 111    111223447889999999999999


Q ss_pred             eCCCeEEEEe
Q 026765          168 TGNGTVEVLT  177 (233)
Q Consensus       168 ~~~~~v~~~~  177 (233)
                      ..+|.+.+|.
T Consensus       331 d~~g~v~~wa  340 (1118)
T KOG1275|consen  331 DHEGHVNLWA  340 (1118)
T ss_pred             cccCcEeeec
Confidence            9999999997

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.31  E-value=0.00012  Score=64.89  Aligned_cols=193  Identities=15%  Similarity=0.220  Sum_probs=121.3

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE----
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWD----   95 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd----   95 (233)
                      +.|.++.|-.+...++.+..+|.|.+-|.+..      .+++-| ....|.+++|+|+. .+++-...++++.+-+    
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~------~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETL------ELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccc------ceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecccc
Confidence            57999999999999999999999998776532      122323 45789999999985 5666666666665422    


Q ss_pred             CCCC-------------------eeeeeee----------------------ecCCeeEEEECCCCCeEEEEc----CC-
Q 026765           96 ARSG-------------------KCSQQAE----------------------LSGENINITYKPDGTHIAVGN----RD-  129 (233)
Q Consensus        96 ~~~~-------------------~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~----~d-  129 (233)
                      .-..                   +....+.                      .+.....+.|.-||.++++..    .+ 
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            1100                   0000011                      111234588999999998732    23 


Q ss_pred             CcEEEEEcCCCeeee-eeecCceeeEEEECCCCCEEEEEeC---CCeEEEEecCCceeee----EEeeecCceeEEEECC
Q 026765          130 DELTILDVRKFKPIH-RRKFGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPLD----TVVAHTAGCYCIAIDP  201 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~----~~~~~~~~v~~i~~~p  201 (233)
                      .++++||-+ +..-. ..+....-.+++|-|.|..+++...   ++.|.++-- ++..-.    .+......|..++|+-
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC
Confidence            789999965 21111 1122234567899999998887643   455666542 222211    1222334488999999


Q ss_pred             CCCEEEE---eeCCCcEEEEecCC
Q 026765          202 MGRYFAV---GSADSLVSLWDISE  222 (233)
Q Consensus       202 ~~~~las---~s~dg~v~iwd~~~  222 (233)
                      ++..||.   ......|++|-...
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecC
Confidence            9999998   55566699997653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.29  E-value=9.2e-05  Score=62.27  Aligned_cols=123  Identities=13%  Similarity=0.185  Sum_probs=85.9

Q ss_pred             CCeEEEEECCC-----CeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCee------------eeeeecC
Q 026765           88 DKTVRLWDARS-----GKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP------------IHRRKFG  149 (233)
Q Consensus        88 d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------------~~~~~~~  149 (233)
                      ++.|.+.|.++     .+..........+..+.++|||+++++++ .+..+.++|+.+.+.            +.+.+.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            57899999987     35556666677777899999999987665 478999999987553            3344455


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecCC----------ceeeeEEeeecCce-----eEEEECCCCCEEEEee
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS----------LRPLDTVVAHTAGC-----YCIAIDPMGRYFAVGS  210 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~v-----~~i~~~p~~~~las~s  210 (233)
                      .......|..+|+.+.+-.-|..+..|++..          ...+..+..|-.+.     ..=.-.|+|++|++..
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            5667889999998888888899999999764          22333333332221     1122467888887754

>smart00320 WD40 WD40 repeats

Probab=98.27  E-value=4.4e-06  Score=42.97  Aligned_cols=38  Identities=37%  Similarity=0.664  Sum_probs=33.5

Q ss_pred             eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +++..+..|...|.++.|+|.+.++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.23  E-value=0.00016  Score=59.14  Aligned_cols=156  Identities=17%  Similarity=0.255  Sum_probs=96.8

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCc--EEEEEcCCC
Q 026765           67 DSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILDVRKF  140 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d~~~~  140 (233)
                      ..+..-+|+|++..+....-..   ..+.++|+.+++........+....-+|+|||++++- ...|+.  |.++|+...
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~  272 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK  272 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence            4555667888877654432222   4588999999887777666677777899999998874 445565  556677655


Q ss_pred             eeeeeeecCc-eeeEEEECCCCCEEEEEe-CCCeEEEE--ecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-Cc-
Q 026765          141 KPIHRRKFGY-EVNEIAWNMTGEMFFLTT-GNGTVEVL--TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SL-  214 (233)
Q Consensus       141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~-  214 (233)
                      +.. ...... .-..=.|+|+|+.++-.+ ..|.-.+|  +.+.... ..+......-..-.|+|+|++|+..+.. |. 
T Consensus       273 ~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~  350 (425)
T COG0823         273 NLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW  350 (425)
T ss_pred             cce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence            422 222211 222457899999988664 44544444  4443333 3333333222356799999998877743 44 


Q ss_pred             -EEEEecCCcE
Q 026765          215 -VSLWDISEML  224 (233)
Q Consensus       215 -v~iwd~~~~~  224 (233)
                       |.+.|+.++.
T Consensus       351 ~i~~~~~~~~~  361 (425)
T COG0823         351 DIDKNDLASGG  361 (425)
T ss_pred             eeEEeccCCCC
Confidence             6677665554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00018  Score=58.95  Aligned_cols=186  Identities=17%  Similarity=0.251  Sum_probs=103.9

Q ss_pred             eeCccccEEEEEECcCCCEEEEEe--CC--CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGS--VD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~--~D--~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      +..-...+..-+|+|++..++--+  ..  ..+.+++++......+  ..+.++.   ..-.|+|++.+++++...|+..
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~---~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNN---GAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCcc---CCccCCCCCCEEEEEECCCCCc
Confidence            333355566778999988765543  22  2477777765443322  2344443   3458999999999999999876


Q ss_pred             EEE--ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           92 RLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        92 ~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                      .||  |+..+...+.....+....-.|+|||++++-.+ ..|.  |.++++..............-..-.|+|+|++++.
T Consensus       263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence            655  676665433222233334567899999987444 4454  55556555443221111112225678999999987


Q ss_pred             EeCC-Ce--EEEEecCCceeeeEEeeecCceeEEEECCCCCEEE
Q 026765          167 TTGN-GT--VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA  207 (233)
Q Consensus       167 ~~~~-~~--v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~la  207 (233)
                      .+.. |.  +.+.+..+......+. +......-++.|+++.+.
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM  385 (425)
T ss_pred             EeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence            7643 44  4444443333222221 222222344566665544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=5.9e-05  Score=61.57  Aligned_cols=156  Identities=19%  Similarity=0.247  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-----------CCcEEEEEc
Q 026765           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-----------DDELTILDV  137 (233)
Q Consensus        69 v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~  137 (233)
                      -+-+.|+|.|. +|+|--.. -|.+|--.+-...+.+.+ ..+.-+.|+|..+||++-+.           ...+.|||+
T Consensus       213 etyv~wSP~GT-YL~t~Hk~-GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGT-YLVTFHKQ-GIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCce-EEEEEecc-ceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35678999864 66665544 478886544443444432 33456889999999987653           246999999


Q ss_pred             CCCeeeeeeec---C-ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-
Q 026765          138 RKFKPIHRRKF---G-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-  212 (233)
Q Consensus       138 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-  212 (233)
                      +++........   . ....-..|+.|+++++....+ .+.||..+...++..-...-.+|....|+|.++.||--... 
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence            98765544332   1 234567899999999988874 68899877655543333345667888899998888754432 


Q ss_pred             ----CcEEEEecCCcEEEEe
Q 026765          213 ----SLVSLWDISEMLCVRT  228 (233)
Q Consensus       213 ----g~v~iwd~~~~~~i~~  228 (233)
                          ..+.+-.+.++..|++
T Consensus       369 ~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             cCCcceEEEEecCccceeee
Confidence                2345555555544443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.12  E-value=0.0031  Score=51.33  Aligned_cols=207  Identities=11%  Similarity=0.141  Sum_probs=116.7

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-----------------------cee----------------eEEE
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------------------KVK----------------DIEL   62 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-----------------------~~~----------------~~~~   62 (233)
                      .|+.+.|.++...|+.|-..|.|.||........                       .+.                ..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999999999999999999865321100                       000                0112


Q ss_pred             ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC---------CeeEEEEC-----CCC---CeEEE
Q 026765           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITYK-----PDG---THIAV  125 (233)
Q Consensus        63 ~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~~l~~  125 (233)
                      ....++|++++.+.-  .+++.|..+|.+.|.|+|....+.......         .+.++.|.     .|+   -.+++
T Consensus        83 ~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            345678999998643  588999999999999999887665433322         22334442     333   36788


Q ss_pred             EcCCCcEEEEEcCC-Cee------eeee-ecCceeeEEE-ECCC--------------------CCEEEEEeCCCeEEEE
Q 026765          126 GNRDDELTILDVRK-FKP------IHRR-KFGYEVNEIA-WNMT--------------------GEMFFLTTGNGTVEVL  176 (233)
Q Consensus       126 ~~~d~~i~i~d~~~-~~~------~~~~-~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~~v~~~  176 (233)
                      |...|.+.+|.+.. ...      .... ....++..+. ++.+                    -+.+++.+.+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            99999999998641 110      1111 1111111111 2111                    1235666777889999


Q ss_pred             ecCCceeeeEEeeecCceeEEEE-----CCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          177 TYPSLRPLDTVVAHTAGCYCIAI-----DPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~i~~-----~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ...+.+...+..........+.+     ...+..|++-..+|.|++|.+-..+.+..++
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            88766654443322112223334     2355678888999999999999988887654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.10  E-value=0.0021  Score=48.71  Aligned_cols=168  Identities=16%  Similarity=0.215  Sum_probs=100.4

Q ss_pred             EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDV  137 (233)
Q Consensus        60 ~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (233)
                      ..+++-...++.++|+|+...+++.....+.|..++.. |+..+...+.+  ....+++..++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            35666667799999999877788888888899888874 66666665543  4556888888877777767888988887


Q ss_pred             CCCe----e--eeeeec------CceeeEEEECCCCCEEEEEeCCCeEEEEecCC---ceeeeE--Ee------eecCce
Q 026765          138 RKFK----P--IHRRKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDT--VV------AHTAGC  194 (233)
Q Consensus       138 ~~~~----~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~--~~------~~~~~v  194 (233)
                      ....    .  ......      +.....++|++.++.++++-+..-..++..+.   ...+..  ..      .....+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3211    1  112222      23478899999988888887776666665532   111111  00      123346


Q ss_pred             eEEEECCCCC-EEEEeeCCCcEEEEecCCcEEEEee
Q 026765          195 YCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       195 ~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .+++++|... +++....+..|.++| .+|..+..+
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence            7889998754 566667788899999 567766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0024  Score=51.89  Aligned_cols=159  Identities=18%  Similarity=0.240  Sum_probs=115.0

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC---CCcEEEEEcCCCeeeee
Q 026765           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHR  145 (233)
Q Consensus        69 v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~  145 (233)
                      -..++.++.+.+..+....+..|.+.|....+.............++++|+++.+.++..   ++.+.+.|..+...+..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            345677777777777777789999999888777777666667778999999988776655   67888999887777766


Q ss_pred             eecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCceeee-E---EeeecCceeEEEECCCCCEEEEeeCC---CcEEE
Q 026765          146 RKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD-T---VVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSL  217 (233)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~---~~~~~~~v~~i~~~p~~~~las~s~d---g~v~i  217 (233)
                      ...+.....++++|+|+.++... .++.+.+++........ .   ...-......+.++|+|.++...-..   +.+.+
T Consensus       156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            55554448899999999766665 78999999976544332 1   11122334678999999865443332   68999


Q ss_pred             EecCCcEEEE
Q 026765          218 WDISEMLCVR  227 (233)
Q Consensus       218 wd~~~~~~i~  227 (233)
                      .|...+....
T Consensus       236 id~~~~~v~~  245 (381)
T COG3391         236 IDTATGNVTA  245 (381)
T ss_pred             EeCCCceEEE
Confidence            9988776544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.7e-05  Score=64.33  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=69.6

Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCcee-EEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      +..+..+.|+|.-.+++.+..+|.+.+..+. .+.+-++.-++..++ +++|.|||+.||.|-.||+|++-|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4567788999999999999999999988876 666777776777777 99999999999999999999999999998877


Q ss_pred             e
Q 026765          228 T  228 (233)
Q Consensus       228 ~  228 (233)
                      .
T Consensus        99 ~   99 (665)
T KOG4640|consen   99 S   99 (665)
T ss_pred             c
Confidence            6

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=0.00099  Score=54.87  Aligned_cols=145  Identities=12%  Similarity=0.177  Sum_probs=79.8

Q ss_pred             cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI  143 (233)
Q Consensus        64 ~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  143 (233)
                      ........+.++|++. +++. +.||...|+.....+...    .+.....+|.+.++ +++-.....|.++.--..+..
T Consensus        30 ~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence            3444578899999864 4444 678888888854433222    23345678888554 565555788998742222222


Q ss_pred             eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ...+.+..+..+-.   |..+...+.+ .+.+||+.+.+.+..+...  +|..+.|++++.++|..+.+ .+.|++.+.
T Consensus       103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            23333334444433   7777666555 8999999999888877633  48899999999999988866 566666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=0.00014  Score=61.75  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             CccccEEEEEECc-----------CCC-------EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC
Q 026765           18 GHKKKVHSVAWNC-----------TGT-------KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA   79 (233)
Q Consensus        18 ~H~~~V~~~~~~~-----------~~~-------~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   79 (233)
                      +|+..+++....|           .++       .+|.|-..|+|-|.|+.+..    ....+.-|+..|.++.|-..  
T Consensus       405 ~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~----v~~~fsvht~~VkgleW~g~--  478 (1062)
T KOG1912|consen  405 SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA----VAASFSVHTSLVKGLEWLGN--  478 (1062)
T ss_pred             CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh----hhhhhcccccceeeeeeccc--
Confidence            5777777766544           122       46778889999999996532    12246678888988888654  


Q ss_pred             CEEEEEe----------CCCeEEEEECCCCeeeeeee----ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765           80 DLIATAS----------GDKTVRLWDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        80 ~~l~sg~----------~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (233)
                      .-++|.+          .-+.+.+-|+++|.....-.    -..++..+..+..++|++..-.+.-+.+||+++
T Consensus       479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt  552 (1062)
T KOG1912|consen  479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT  552 (1062)
T ss_pred             eeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence            2333433          23456788899886433221    123455678888999999999999999999854

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.02  E-value=0.0028  Score=49.05  Aligned_cols=140  Identities=19%  Similarity=0.247  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCCEEEEEeCCCe-EEEEECCCCeeeeeeeec-CCee--EEEECCCCCeEEEEcC-----CCcEEEEEcC-C
Q 026765           70 DQLCWDPKHADLIATASGDKT-VRLWDARSGKCSQQAELS-GENI--NITYKPDGTHIAVGNR-----DDELTILDVR-K  139 (233)
Q Consensus        70 ~~~~~~~~~~~~l~sg~~d~~-i~iwd~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~-----d~~i~i~d~~-~  139 (233)
                      ..++.+|.....++.+-.-|+ ..+||.++++....+... +..+  -..|++||++|++.-.     .|.|-+||.. .
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            356778877788888888886 568999998876654332 2222  2689999999987654     3679999998 5


Q ss_pred             Ceeeeeee-cCceeeEEEECCCCCEEEEEeC------------------CCeEEEEecCCceeeeE--E--eeecCceeE
Q 026765          140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG------------------NGTVEVLTYPSLRPLDT--V--VAHTAGCYC  196 (233)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~--~--~~~~~~v~~  196 (233)
                      .+.+.... .+...-.+.+.|+|+.++++.+                  +.++.+.|..+++.+.+  +  .-|...+..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            55555443 3445567788999988877653                  23444555566665555  3  226667888


Q ss_pred             EEECCCCCEEEEe
Q 026765          197 IAIDPMGRYFAVG  209 (233)
Q Consensus       197 i~~~p~~~~las~  209 (233)
                      ++++++|..+...
T Consensus       168 La~~~~G~V~~a~  180 (305)
T PF07433_consen  168 LAVDGDGTVAFAM  180 (305)
T ss_pred             EEecCCCcEEEEE
Confidence            9998888765543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=2.5e-05  Score=61.30  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=69.6

Q ss_pred             EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCC
Q 026765           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRK  139 (233)
Q Consensus        61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~  139 (233)
                      -+++|...|.+++|+|....++..++.+..|+|.|+++..++........+++++|+-|. ++|..|...|.+.+||++.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            356788899999999987778899999999999999999888888888888999997765 5677888899999999986


Q ss_pred             Ce
Q 026765          140 FK  141 (233)
Q Consensus       140 ~~  141 (233)
                      .+
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            43

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.98  E-value=0.0018  Score=53.40  Aligned_cols=148  Identities=18%  Similarity=0.244  Sum_probs=80.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.+....-....+.++|.|+.++.++ ||.-.|+....    ...  ..   .+....++|.+.  ..+|.-.....|.
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~----~r~--k~---~G~g~~~vw~~~--n~yAv~~~~~~I~   92 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA----WRN--KA---FGSGLSFVWSSR--NRYAVLESSSTIK   92 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT----TEE--EE---EEE-SEEEE-TS--SEEEEE-TTS-EE
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC----Ccc--cc---cCceeEEEEecC--ccEEEEECCCeEE
Confidence            345544555678999999999988844 78777776321    111  11   133456778774  3456666688899


Q ss_pred             EE-ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765           93 LW-DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        93 iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      |+ ++.. .....+..+.....+..   |..|+..+.+ .+.+||..+.+.+.+.... ++..+.|++++++++..+.+ 
T Consensus        93 I~kn~~~-~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen   93 IYKNFKN-EVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             EEETTEE--TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--
T ss_pred             EEEcCcc-ccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-
Confidence            96 3322 21112222222222222   7777766555 7999999998888777754 37899999999999988766 


Q ss_pred             eEEEEecC
Q 026765          172 TVEVLTYP  179 (233)
Q Consensus       172 ~v~~~~~~  179 (233)
                      .+.+++..
T Consensus       166 ~i~il~~~  173 (443)
T PF04053_consen  166 SIYILKYN  173 (443)
T ss_dssp             SEEEEEE-
T ss_pred             eEEEEEec
Confidence            56676653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.00037  Score=60.68  Aligned_cols=141  Identities=13%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCC-------CCeEEEEcCCCcEEEEEcCCCe--eee---
Q 026765           78 HADLIA-TASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------GTHIAVGNRDDELTILDVRKFK--PIH---  144 (233)
Q Consensus        78 ~~~~l~-sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~--~~~---  144 (233)
                      +..+|+ .......|.-.|+..|+.+..+..+....-..+.|+       ....++|-.+..+..||+|...  .+.   
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            344544 444567888899999999998887765534455553       2345678888999999998532  221   


Q ss_pred             -eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          145 -RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                       .+..+....+++-+.+ .++++|+.+|.|++||-. ++..++ +.+-+.+|..|..+.||+++++. .+..+.+.+..
T Consensus       572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~t~  647 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILAT-CKTYLLLIDTL  647 (794)
T ss_pred             cccccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEe-ecceEEEEEEe
Confidence             1122233455554444 478999999999999943 333333 44668899999999999997644 35667777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.94  E-value=2.2e-06  Score=70.75  Aligned_cols=162  Identities=19%  Similarity=0.281  Sum_probs=100.9

Q ss_pred             eeCccccEEEEEECc-CCCEEEEE----eCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           16 YTGHKKKVHSVAWNC-TGTKLASG----SVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~-~~~~l~s~----~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ..+|....++++|++ |.++||.|    -.|-.++|||+...-........+.+ ......+++|.. +.+++.+|...+
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr  176 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSR  176 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccc
Confidence            357888999999997 45677776    34678999998753111111222333 445666889984 567888999999


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEE-cCCCee-eeeee-----cCceeeEEEECCCC
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGNRDDELTILD-VRKFKP-IHRRK-----FGYEVNEIAWNMTG  161 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~-~~~~~-----~~~~~~~~~~~~~~  161 (233)
                      .++++|++.............+..+..+| .+.++++-. |+.+.+|| .++.+. +....     ....+..++|.|..
T Consensus       177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            99999998542211111122333456677 667877655 89999999 444321 11111     12247788898865


Q ss_pred             CEE--EEEeCCCeEEEEecC
Q 026765          162 EMF--FLTTGNGTVEVLTYP  179 (233)
Q Consensus       162 ~~~--~~~~~~~~v~~~~~~  179 (233)
                      .-+  ++.-..++++.++..
T Consensus       256 tglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  256 TGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cchhhhhccCcceEEEeccc
Confidence            433  333456788888763

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.93  E-value=0.0018  Score=42.15  Aligned_cols=97  Identities=15%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee
Q 026765           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV  152 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  152 (233)
                      .|..++.+-|+.|+.|..||+|+-.  ....+......+..+.-... ..++.+..+|+|-+|+..  +...+.+....+
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~   83 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQV   83 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCe
Confidence            3444556778899999999999854  45555555666677665555 578899999999999853  334444444445


Q ss_pred             eEEEE-CCC--C-CEEEEEeCCCeEE
Q 026765          153 NEIAW-NMT--G-EMFFLTTGNGTVE  174 (233)
Q Consensus       153 ~~~~~-~~~--~-~~~~~~~~~~~v~  174 (233)
                      .++.+ ..+  | ..+++|-.+|.+.
T Consensus        84 ~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   84 TSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEEcCCCCCceEEEEEecCCeEE
Confidence            55543 222  2 2467777777664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.93  E-value=8e-06  Score=70.08  Aligned_cols=162  Identities=14%  Similarity=0.203  Sum_probs=113.2

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCC--CcEEEEEcC
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRD--DELTILDVR  138 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~  138 (233)
                      ++.|....++++|+.. .+.|+.|+..|.|+++++.+|........++ .+..+.-+.+|..+++.+.-  .-..+|++.
T Consensus      1097 frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            5667888999999975 5678899999999999999887655444443 33345556677776654433  246789875


Q ss_pred             C-CeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE-eee---cCceeEEEECCCCCEEEEeeCCC
Q 026765          139 K-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAH---TAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~---~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      . +.+.+.+.   +-.++.|+...+.-++|+......+||..+..++.++ .+-   .-.-++..|+|+.+.+.   .||
T Consensus      1176 s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1176 STGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred             cccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc
Confidence            4 33333322   3446677777777788888889999999988776663 221   11236788999988766   455


Q ss_pred             cEEEEecCCcEEEEeeecC
Q 026765          214 LVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       214 ~v~iwd~~~~~~i~~~~~~  232 (233)
                        .+||++..+-|+.|.++
T Consensus      1250 --vLWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred             --eeeeeccHHHHhhhhhh
Confidence              47999988888888765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.90  E-value=0.0073  Score=47.91  Aligned_cols=131  Identities=13%  Similarity=0.148  Sum_probs=81.6

Q ss_pred             CeEEEEECCCC-----ee--eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeeecCceeeEEEECCC
Q 026765           89 KTVRLWDARSG-----KC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMT  160 (233)
Q Consensus        89 ~~i~iwd~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~  160 (233)
                      |.|.++++...     +.  .......+.+.+++-- ++ +++++. ++.+.+|++...+ .........+...+.....
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            89999999884     22  3344556777776544 34 444333 4789999987766 3333333222233333334


Q ss_pred             CCEEEEEeCCCeEEEEecCC-ceeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          161 GEMFFLTTGNGTVEVLTYPS-LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ++++++++....+.++.++. ...+..+..  ....++++.+-++++.++.+..+|.+.++....
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            67999999988888886543 333333333  234577788876667999999999999998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.00064  Score=57.24  Aligned_cols=117  Identities=10%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      |...|.--+++..+++++-|++-|.|.+|+-...   ........+-...+.....++. .+++|.|+..|.|.++-+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~---~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG---EMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCch---hhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhc
Confidence            5666666677788999999999999999874321   1111122233345555667765 46888899999999998766


Q ss_pred             Ceeeeee-----ee--cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765           99 GKCSQQA-----EL--SGENINITYKPDGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        99 ~~~~~~~-----~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (233)
                      +......     ..  +..+.+++|++++..+.+|...|++..-.+..
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            4322111     11  33467899999999999999999988876654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0044  Score=53.62  Aligned_cols=177  Identities=10%  Similarity=0.120  Sum_probs=107.4

Q ss_pred             eeeCcccc-EEEEEECcCCCEEEEEeCCCC-----EEEEecccCCCCc-eeeE---EEec-----CcCcEEEEEEcCCCC
Q 026765           15 EYTGHKKK-VHSVAWNCTGTKLASGSVDQT-----ARVWHIEPHGHGK-VKDI---ELRG-----HADSVDQLCWDPKHA   79 (233)
Q Consensus        15 ~~~~H~~~-V~~~~~~~~~~~l~s~~~D~~-----v~vW~~~~~~~~~-~~~~---~~~~-----h~~~v~~~~~~~~~~   79 (233)
                      .|..+... |..+....+.+.|+|-+.|+.     |+||+++...... ...+   ....     ...++.+++.+.+ -
T Consensus        59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l  137 (933)
T KOG2114|consen   59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-L  137 (933)
T ss_pred             hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-c
Confidence            44445444 554444445578999887764     8999997542211 1111   2222     3456888888865 5


Q ss_pred             CEEEEEeCCCeEEEEEC---CCC--eeeeeeeecCCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeeee--eecCce
Q 026765           80 DLIATASGDKTVRLWDA---RSG--KCSQQAELSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHR--RKFGYE  151 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~---~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~  151 (233)
                      +.+|.|-.+|.|..+.-   +..  +.........++..+++..++.- +.+++ ...+.+|.+....+...  -..+..
T Consensus       138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~  216 (933)
T KOG2114|consen  138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGIS  216 (933)
T ss_pred             cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCcc
Confidence            68899999999998842   111  12222334456777888777765 22222 34588888864332222  234667


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCce
Q 026765          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGC  194 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v  194 (233)
                      .++..+++....++++... .+.+|+.+...+...+. +|....
T Consensus       217 lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  217 LNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             ceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence            8888888766656666544 68888887766666666 555433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.84  E-value=0.0013  Score=49.20  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=80.3

Q ss_pred             CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765          121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID  200 (233)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~  200 (233)
                      .+++.|+..+.+.-.|..+++.......+..+.+-+.- -|+++++|+.+|.+++.+..+++.+..+..-+.--......
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            45667777788888888777766655555444433221 57889999999999999999997777665433322234567


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          201 PMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       201 p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +++..+..|+.|++.+.-|..+-.|++..
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEec
Confidence            89999999999999999999988888763

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.82  E-value=0.0046  Score=50.53  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=89.4

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeecCCe--------eEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELSGEN--------INITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGY  150 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  150 (233)
                      .++.++.++.+...|..+++...........        ..+..+|  .+..+++++.++.+..+|+.+++.+.......
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~  286 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS  286 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC
Confidence            3556778888988898888654333221110        0011122  24566777788999999998887765544332


Q ss_pred             eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .. .+  ...+..+++.+.+|.+..++..+++.+-....-... ..+...  .+.+|..++.||.+...|.++|+.+-++
T Consensus       287 ~~-~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        287 VN-DF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             cc-Cc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            11 11  124667788888999999998877654322211111 111111  2567788999999999999999887665


Q ss_pred             e
Q 026765          230 T  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       362 ~  362 (394)
T PRK11138        362 K  362 (394)
T ss_pred             E
Confidence            3

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.82  E-value=4.9e-05  Score=65.14  Aligned_cols=112  Identities=15%  Similarity=0.195  Sum_probs=87.3

Q ss_pred             EEECCCCCeEEEEc----CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765          114 ITYKPDGTHIAVGN----RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       114 ~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  189 (233)
                      ..|+|....+++++    ..|.+.||- .++++......+..+++++|+|..-.++.+=+-|.+.+|...+.+.......
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t   99 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET   99 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence            45667666666554    346788774 4555555555556788899999887788888899999999877666656668


Q ss_pred             ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       190 ~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      |..+|..+.|||+|..|.++..-|.|.+|.......+
T Consensus       100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen  100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             CCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence            9999999999999999999999999999998754433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.75  E-value=0.0053  Score=55.03  Aligned_cols=153  Identities=15%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc----CCCee
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV----RKFKP  142 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~~~  142 (233)
                      +.|.++.|..+. +-++.+...|.|.+-|..+......-.....+.+++|+||...++..+.++++.+..-    -..++
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            578888888765 4455677888888888877655444455677788999999999998888777766431    00010


Q ss_pred             e-------------------eeee----------------------cCceeeEEEECCCCCEEEEEe-----CCCeEEEE
Q 026765          143 I-------------------HRRK----------------------FGYEVNEIAWNMTGEMFFLTT-----GNGTVEVL  176 (233)
Q Consensus       143 ~-------------------~~~~----------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~  176 (233)
                      +                   .+..                      ....-..+.|--||+++++..     +...+++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0                   0000                      001123488999999998842     33799999


Q ss_pred             ecCCceeeeEEeeecCceeEEEECCCCCEEEEee---CCCcEEEEecC
Q 026765          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS---ADSLVSLWDIS  221 (233)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s---~dg~v~iwd~~  221 (233)
                      +.+ +.....-..-...=.+++|-|.|..+|+--   +|+.|.+|..+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence            965 221111111112224799999999988744   45678888765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.75  E-value=0.013  Score=46.40  Aligned_cols=172  Identities=15%  Similarity=0.146  Sum_probs=97.2

Q ss_pred             CCEEEEecccCC--CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeecCCeeEEEECC
Q 026765           42 QTARVWHIEPHG--HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-CSQQAELSGENINITYKP  118 (233)
Q Consensus        42 ~~v~vW~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~  118 (233)
                      |.|.++++....  ..++..+.-....++|++++-.  ++.++ .| ..+.|.+|++...+ ..................
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv-~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLV-VA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEE-EE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEE-Ee-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            889999987521  1122222223356789988765  23444 33 34889999998877 555444444434444444


Q ss_pred             CCCeEEEEcCCCcEEEEEcCC-Ce---eeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-------ce-eeeE
Q 026765          119 DGTHIAVGNRDDELTILDVRK-FK---PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-------LR-PLDT  186 (233)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~-~~~~  186 (233)
                      .++++++|.....+.++.... ..   .+..-.....+.++.+=++++.+++++.+|.+.++..+.       .. .+..
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~  217 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLER  217 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEE
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccccee
Confidence            466999998888888774432 12   222222234567777765667999999999999998752       11 1211


Q ss_pred             E-ee-ecCceeEE---EECCC--CC------EEEEeeCCCcEEE
Q 026765          187 V-VA-HTAGCYCI---AIDPM--GR------YFAVGSADSLVSL  217 (233)
Q Consensus       187 ~-~~-~~~~v~~i---~~~p~--~~------~las~s~dg~v~i  217 (233)
                      . .- .+..|+++   ++.|.  +.      .++-++.+|.|-+
T Consensus       218 ~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  218 ISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            1 11 24567776   44552  22      3777888888873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.017  Score=47.49  Aligned_cols=171  Identities=14%  Similarity=0.204  Sum_probs=88.5

Q ss_pred             CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC-----eeEE---
Q 026765           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-----NINI---  114 (233)
Q Consensus        43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~---  114 (233)
                      .|+||+...   ..+..+.+..  +.+.++.|..+  ..|+.-..||.+++||+....   .+.....     +...   
T Consensus        62 ~I~iys~sG---~ll~~i~w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSSG---KLLSSIPWDS--GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECCCC---CEeEEEEECC--CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccccc
Confidence            477776532   2234445544  78999999864  344566799999999986433   2211111     1111   


Q ss_pred             --EECCCCCeEEEEcCCCcEEEEEcCCCe-eeeee-ec-C----c----eeeE-EEECCCCCEEEEEeCCCeEEEEecCC
Q 026765          115 --TYKPDGTHIAVGNRDDELTILDVRKFK-PIHRR-KF-G----Y----EVNE-IAWNMTGEMFFLTTGNGTVEVLTYPS  180 (233)
Q Consensus       115 --~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~-~----~----~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  180 (233)
                        .+..+|  +++-..++.+.+..-.... ..... .. .    .    .... ..++.+....+....++.+.+.+...
T Consensus       132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence              222234  2222334444333211111 00000 00 0    0    0000 12333444444444455555444332


Q ss_pred             ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       181 ~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .+.   + ...+++..+++||+++++|.-..+|.+.|...+-.+++.+|
T Consensus       210 ~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  210 FKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             ccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            211   1 12357899999999999999999999999887655555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.0004  Score=58.39  Aligned_cols=112  Identities=17%  Similarity=0.302  Sum_probs=79.1

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-e-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee
Q 026765           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (233)
                      .|.--+++.. .++++-|+.-|.+.+|+-..+.....-. . ++.......+++..++|.|+..+.|.++-+....+-..
T Consensus        35 ~v~lTc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            3333344443 4678899999999999987665322211 1 22334467788888899999999999987755332211


Q ss_pred             -------eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC
Q 026765          146 -------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (233)
Q Consensus       146 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  180 (233)
                             ..++..|+++.|++++..+.+|...|+|....+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                   11356799999999999999999999999887765

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.64  E-value=0.0084  Score=45.08  Aligned_cols=111  Identities=16%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceee-EE
Q 026765           77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-EI  155 (233)
Q Consensus        77 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~  155 (233)
                      +...+++.|+-.+.+.--|..+|....+........+-+.- -|+.++.|...+.+.+.+..++...........+. ..
T Consensus        21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             CCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            34567778888888888888888766555444433321111 35679999999999999998887665544332332 23


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEe
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV  188 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  188 (233)
                      ...+++..+..++.|++.+..|.++...+.+..
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            457899999999999999999998877766543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.0019  Score=55.86  Aligned_cols=111  Identities=14%  Similarity=0.349  Sum_probs=63.3

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecC--cCcEEEEEE--cCCCCC-----EEEEEeC
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH--ADSVDQLCW--DPKHAD-----LIATASG   87 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h--~~~v~~~~~--~~~~~~-----~l~sg~~   87 (233)
                      ..|+.+|..+.|||+|..|+|+..-|.|.+|.....+  .+....+..|  .+.++-++|  ++++..     ..+..+.
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g--~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD  175 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG--EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD  175 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc--ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence            4699999999999999999999999999999876321  1111111122  123333333  332111     1233344


Q ss_pred             CCeEE-EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765           88 DKTVR-LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD  136 (233)
Q Consensus        88 d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d  136 (233)
                      ++.+- .++.+.....+....       .-.|+|..+..++.+|.+...|
T Consensus       176 e~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~GtVyyvd  218 (1416)
T KOG3617|consen  176 ESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGTVYYVD  218 (1416)
T ss_pred             hhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCceEEEEc
Confidence            44433 444332211111111       1246777888888888887777

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.61  E-value=0.003  Score=51.62  Aligned_cols=133  Identities=13%  Similarity=0.108  Sum_probs=84.8

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-C-ceeeEEEEC
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-G-YEVNEIAWN  158 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~~~~~~~~  158 (233)
                      .++.++.++.+..+|..+++..-....... ..+.  ..+..+..++.++.+..+|..+++.+..... . ........ 
T Consensus       258 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-  333 (394)
T PRK11138        258 VVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-  333 (394)
T ss_pred             EEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-
Confidence            455677889999999998875443332221 1111  2456777788899999999987766543221 1 11111111 


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeE-EEECCCCCEEEEeeCCCcEEEEec
Q 026765          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC-IAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~-i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                       .+..+++++.+|.+..+|..+++.+.........+.+ -.+  .+..|..++.||.|..+++
T Consensus       334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 -YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence             3567888899999999999998877665443333332 111  3457888899999988764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.00018  Score=52.54  Aligned_cols=140  Identities=15%  Similarity=0.179  Sum_probs=89.6

Q ss_pred             EEEEeCCCeEEEEECCCCeeeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cC--ceeeEEEE
Q 026765           82 IATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FG--YEVNEIAW  157 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~--~~~~~~~~  157 (233)
                      +..-+.|+.|+-++++.-+.... .......  .....-+..+++|+.++.+.+|.......+.... ..  .-...+.-
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            34557788888888765432111 1111111  1222345678899999999999865322222111 11  11222233


Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCEEEEe--eCCCcEEEEecCCc
Q 026765          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVG--SADSLVSLWDISEM  223 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~--s~dg~v~iwd~~~~  223 (233)
                      ..++.+.++++.+|.++.++....+.......|. .++.....+..+++++.+  |.|..++.||+.+.
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            3456678899999999999998877766666677 566667777778888888  89999999998754

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00073  Score=56.25  Aligned_cols=92  Identities=17%  Similarity=0.315  Sum_probs=69.4

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEE-EEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD-QLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      .-.|.-+.|+|.-..+|.+-.+|.|.+..++-   .++  +.++-|...++ +++|.|+ +++|+.|-.||+|++-|+.+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRl--wtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRL--WTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc---cee--EeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccC
Confidence            55688899999999999999999999988762   222  34554555565 9999998 57999999999999999998


Q ss_pred             Ceeeee--eeecCCeeEEEEC
Q 026765           99 GKCSQQ--AELSGENINITYK  117 (233)
Q Consensus        99 ~~~~~~--~~~~~~~~~~~~~  117 (233)
                      +.....  +.....+.++-|+
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCceeccccccccchheeecc
Confidence            876655  3333344444454

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.50  E-value=0.031  Score=44.06  Aligned_cols=156  Identities=14%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             CCCCCEEEEEeCCCeEEEEECC-CCeeeeee--eecC---Cee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec
Q 026765           76 PKHADLIATASGDKTVRLWDAR-SGKCSQQA--ELSG---ENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (233)
Q Consensus        76 ~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~--~~~~---~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  148 (233)
                      |.++.-+.+-+.||.+.-..+. .|+..+..  .+..   +.. .-++...+..++=.+.+|.+.-.|+...........
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~  223 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW  223 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence            4444567788999999988886 34433221  1111   111 123333444444467788888888765442221111


Q ss_pred             C-------------ceeeEEEECCCCCEE-EEEe-------CCC--eEEEEecCCceeeeEEeeecCceeEEEECCCCC-
Q 026765          149 G-------------YEVNEIAWNMTGEMF-FLTT-------GNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-  204 (233)
Q Consensus       149 ~-------------~~~~~~~~~~~~~~~-~~~~-------~~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-  204 (233)
                      .             ....-+++++..+.+ ++..       .++  .|.++|..+.+.+..+.. ...+.+|+.+.+.+ 
T Consensus       224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P  302 (342)
T PF06433_consen  224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKP  302 (342)
T ss_dssp             ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-
T ss_pred             cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCc
Confidence            0             123346777655444 3332       122  455667888888887764 23577999998776 


Q ss_pred             EEEEe-eCCCcEEEEecCCcEEEEeeecC
Q 026765          205 YFAVG-SADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       205 ~las~-s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +|.+. ..++.+.|||..+|+.+++.+++
T Consensus       303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  303 LLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            55444 45899999999999999998765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.43  E-value=0.00054  Score=37.43  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       191 ~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      ...|.+++|+|...+||.|+.||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            346889999999999999999999999998 4443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.0041  Score=51.12  Aligned_cols=137  Identities=12%  Similarity=0.152  Sum_probs=92.2

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCC-------eEEEEcCCCcEEEEEcCCCee--e-----eee
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKP--I-----HRR  146 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~--~-----~~~  146 (233)
                      ++.++.....+.--|+..|+.+..+.++..+.-+.+.|+.+       .-++|-.+..+.-||+|-...  +     +++
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            45677777778888999999998888877655566666543       235677888999999874222  1     111


Q ss_pred             ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      ..+..-.|.+-+ ...++++|+.+|.|++||- .++..++ +.+-+.+|..|..+.+|++|++. .+..+.+-++
T Consensus       428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT  499 (644)
T ss_pred             ccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence            111122333323 3458999999999999996 4443333 56778899999999999987644 3555655554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.43  E-value=0.012  Score=50.60  Aligned_cols=149  Identities=11%  Similarity=0.064  Sum_probs=84.1

Q ss_pred             CcEEEEEEcCCCCCEEEEEe-----CCC--eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC----------
Q 026765           67 DSVDQLCWDPKHADLIATAS-----GDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD----------  129 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~-----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------  129 (233)
                      ..+...+++|++..+.+...     .|.  .|.+++... . ...+........-.|+|+|..++.....          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-V-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-c-ceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            45778889998876655542     243  444445422 2 2322222234557899998877665432          


Q ss_pred             --CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEE---EecCCcee-e---eEEe-eecCceeEEEE
Q 026765          130 --DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---LTYPSLRP-L---DTVV-AHTAGCYCIAI  199 (233)
Q Consensus       130 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~-~---~~~~-~~~~~v~~i~~  199 (233)
                        +.+.+.++.......  .....+..+.|++||..++... ++.+.+   -....++. +   ..+. .-...+.+++|
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence              223333443322221  2345699999999999988776 467766   33333331 1   1122 12233578999


Q ss_pred             CCCCCEEEEeeCCCcEEEEecC
Q 026765          200 DPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       200 ~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .+++.++ .+..++...+|.+.
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEe
Confidence            9988854 55656655666653

>PHA02713 hypothetical protein; Provisional

Probab=97.29  E-value=0.011  Score=50.60  Aligned_cols=143  Identities=8%  Similarity=0.040  Sum_probs=75.8

Q ss_pred             CCEEEEEeCCC-----eEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCC---------------------
Q 026765           79 ADLIATASGDK-----TVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD---------------------  130 (233)
Q Consensus        79 ~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~---------------------  130 (233)
                      +++.+.||.++     .+..||..+.+...........  ..++ .-++...+.|+.++                     
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  430 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS  430 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccc
Confidence            46667787754     4778998876654322222111  1122 22566667777542                     


Q ss_pred             --cEEEEEcCCCeeeeeeecCce-eeEEEECCCCCEEEEEeCC------CeEEEEecCC---ceeeeEEeeecCceeEEE
Q 026765          131 --ELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGN------GTVEVLTYPS---LRPLDTVVAHTAGCYCIA  198 (233)
Q Consensus       131 --~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~---~~~~~~~~~~~~~v~~i~  198 (233)
                        .+..||+++.+......+..+ ........+++..+.|+.+      ..+..||..+   .+.+..+...-.....+.
T Consensus       431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             cceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence              366788776544322221111 1111122356777777643      2456787664   333333332222222333


Q ss_pred             ECCCCCEEEEeeCCC--cEEEEecCCcE
Q 026765          199 IDPMGRYFAVGSADS--LVSLWDISEML  224 (233)
Q Consensus       199 ~~p~~~~las~s~dg--~v~iwd~~~~~  224 (233)
                      +  +++..++|+.|+  .+..||..+.+
T Consensus       511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        511 H--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             E--CCEEEEEeeecceeehhhcCccccc
Confidence            3  678899999888  67778877653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.28  E-value=0.089  Score=45.33  Aligned_cols=185  Identities=14%  Similarity=0.213  Sum_probs=96.9

Q ss_pred             ccEEEEEECcCCCEEEEEe------CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-------
Q 026765           21 KKVHSVAWNCTGTKLASGS------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-------   87 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~------~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-------   87 (233)
                      ..+...+.+|+|+.+|..-      .|..-.+|-.......  ..+ ..+.  ....-.|+|++..+.+....       
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~l-t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQV-LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eee-ecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            4577889999999876554      3555567755432211  111 2332  36677899986544333211       


Q ss_pred             ----CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEE---EEcCCCe-ee-e--eee--cCceeeE
Q 026765           88 ----DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTI---LDVRKFK-PI-H--RRK--FGYEVNE  154 (233)
Q Consensus        88 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~-~~-~--~~~--~~~~~~~  154 (233)
                          .+.+.+.++..+....  .+.+.+..+.|+|||.+++... ++.+.+   -....+. .+ .  ...  ....+..
T Consensus       425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                2233333444333222  3345677899999999988655 456665   3322222 11 0  011  1123577


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          155 IAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      +.|..++.++ ++..++...+|...- +.....+..  ...++.+|+-++.  .+.....+|.+.
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            8999888865 444444444554321 211111122  2456677777763  344445566443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.23  E-value=0.055  Score=41.18  Aligned_cols=168  Identities=13%  Similarity=0.122  Sum_probs=84.4

Q ss_pred             cccEEEEEECcC------CCEEEEEeCCCCEEEEecccCCC---CceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           20 KKKVHSVAWNCT------GTKLASGSVDQTARVWHIEPHGH---GKVKDIELRG-HADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        20 ~~~V~~~~~~~~------~~~l~s~~~D~~v~vW~~~~~~~---~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ..+|-.+.|-+-      ...|+.-.++|.++=+-+.....   .......+.. +...|.++.++|..+-+++.|+...
T Consensus        91 ~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~  170 (282)
T PF15492_consen   91 SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN  170 (282)
T ss_pred             ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence            456666767432      12466667788888877643211   1122233433 4778999999998654445544433


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEE-EECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEE
Q 026765           90 TVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      .-..+....-....--...+.+... ....+...-...   .+..++.+-+.+.... ......+..|..+|+|+.+++.
T Consensus       171 ~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~---~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i  247 (282)
T PF15492_consen  171 QDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS---KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI  247 (282)
T ss_pred             CCccccccccCceEEEEcCCCCcEEEccccCccccccc---cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence            2111110000000000111111111 111111111011   1122333322221111 1223468899999999999999


Q ss_pred             eCCCeEEEEecCCceeeeEEeee
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAH  190 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~  190 (233)
                      .-+|.+.+|+++..+.......+
T Consensus       248 h~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  248 HFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EcCCeEEEEecCcchhhcccchh
Confidence            99999999999887766655433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.20  E-value=0.089  Score=42.98  Aligned_cols=192  Identities=14%  Similarity=0.153  Sum_probs=99.8

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec------CcCcEEEEEEcC---C-C---CCEEE
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------HADSVDQLCWDP---K-H---ADLIA   83 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~---~-~---~~~l~   83 (233)
                      ....++|++++.| +=-++|.|..||++.|-|+.  +...+....+..      ....++++.|..   . +   +-+++
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R--GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR--GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETT--TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECC--CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            4458999999986 55689999999999999984  222232222222      234577787751   1 1   13567


Q ss_pred             EEeCCCeEEEEECCC---Ceeeeee-----eecCCeeEEE-ECCC--------------------CCeEEEEcCCCcEEE
Q 026765           84 TASGDKTVRLWDARS---GKCSQQA-----ELSGENINIT-YKPD--------------------GTHIAVGNRDDELTI  134 (233)
Q Consensus        84 sg~~d~~i~iwd~~~---~~~~~~~-----~~~~~~~~~~-~~~~--------------------~~~l~~~~~d~~i~i  134 (233)
                      .|...|.+.+|.+.-   ++....+     ...+.+..+. ++.+                    -.-+++...+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            889999999998742   2111111     1112222221 2111                    112344445667999


Q ss_pred             EEcCCCeeeeeeecC-ceeeEEEE-----CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec----CceeEEEECCCCC
Q 026765          135 LDVRKFKPIHRRKFG-YEVNEIAW-----NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT----AGCYCIAIDPMGR  204 (233)
Q Consensus       135 ~d~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~  204 (233)
                      +.+.+.+..+..... .....+.+     ...+..+++-..+|.++++.++..+.+..+....    ..+....++++|.
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            998776666544321 22223333     2245567778899999999999988887765432    2234566788888


Q ss_pred             EEEEeeC
Q 026765          205 YFAVGSA  211 (233)
Q Consensus       205 ~las~s~  211 (233)
                      .+.-.+.
T Consensus       320 i~~~~gp  326 (395)
T PF08596_consen  320 IFYWTGP  326 (395)
T ss_dssp             EEEE-SS
T ss_pred             EEEEeCc
Confidence            7665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.12  E-value=0.0019  Score=35.28  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=28.4

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecc
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIE   50 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~   50 (233)
                      ...|.+++|+|..+++|.|..||.|.|+.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999874

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.12  E-value=0.13  Score=43.38  Aligned_cols=195  Identities=12%  Similarity=0.066  Sum_probs=107.9

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecC----cCcE--EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH----ADSV--DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h----~~~v--~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  105 (233)
                      +..+..++.|+.|.-.|..+...  .........    ...+  ..+...  ++..++.++.++.|.-+|.++++..-..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence            45666777788888887754321  111111110    0000  011111  2135667888999999999999876555


Q ss_pred             eecCCe---eEEEECC--CCCeEEEEc---------CCCcEEEEEcCCCeeeeeeecCce--------------------
Q 026765          106 ELSGEN---INITYKP--DGTHIAVGN---------RDDELTILDVRKFKPIHRRKFGYE--------------------  151 (233)
Q Consensus       106 ~~~~~~---~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~--------------------  151 (233)
                      ......   ..+.-+|  .+..+++++         .++.+..+|..+++.........+                    
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            443321   0111111  123444443         357788889888877665543210                    


Q ss_pred             --eeEEEECCCCCEEEEEeCCC------------------eEEEEecCCceeeeEEee--ecC----cee--EE-EE-CC
Q 026765          152 --VNEIAWNMTGEMFFLTTGNG------------------TVEVLTYPSLRPLDTVVA--HTA----GCY--CI-AI-DP  201 (233)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~~~--~~~----~v~--~i-~~-~p  201 (233)
                        .......+.+..+++++.++                  .+..+|..+++..-.+..  |..    ...  .+ .. .-
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence              01223334566778887665                  688888888877655431  110    000  00 01 01


Q ss_pred             CCC---EEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          202 MGR---YFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       202 ~~~---~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++.   .++.++.+|.+.-.|+++|+.+-.++
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            232   57788899999999999999876553

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.02  E-value=0.1  Score=40.33  Aligned_cols=199  Identities=12%  Similarity=0.097  Sum_probs=108.4

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee----------EEEecCcCcEEEEE--EcCCCCCEEEEEeC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----------IELRGHADSVDQLC--WDPKHADLIATASG   87 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~----------~~~~~h~~~v~~~~--~~~~~~~~l~sg~~   87 (233)
                      ...|..+..-|+-+.|+.-+ |+.+.++++..-.......          .........+...+  -.+.+...|+ ...
T Consensus        35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~  112 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAV  112 (275)
T ss_pred             cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEE-EEE
Confidence            34499999988877776654 6999999985322111000          00011223444444  1223334444 445


Q ss_pred             CCeEEEEECCCC-----eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-------------
Q 026765           88 DKTVRLWDARSG-----KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-------------  149 (233)
Q Consensus        88 d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------  149 (233)
                      .+.|.+|.....     +....+.....+..++|.  ++.++.|..+ ...+.|+.+.....-....             
T Consensus       113 kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  113 KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence            568888876543     344566677778888887  4577777654 4778888754432221110             


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee--EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      .++..+... +++++++-  +....+.+. .+++.+  .+.- ...+.++++.  ..||.+-+. +.|.||++.+++.++
T Consensus       190 ~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  190 KPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             CceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence            122222322 34444432  222333333 333332  2221 2234556663  357776665 449999999999999


Q ss_pred             eeec
Q 026765          228 TFTK  231 (233)
Q Consensus       228 ~~~~  231 (233)
                      ++..
T Consensus       262 ~i~~  265 (275)
T PF00780_consen  262 TIPL  265 (275)
T ss_pred             EEEC
Confidence            8864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0049  Score=54.68  Aligned_cols=100  Identities=17%  Similarity=0.341  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCCcEEEEEcCC-Ceeee-eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeE
Q 026765          119 DGTHIAVGNRDDELTILDVRK-FKPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC  196 (233)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~  196 (233)
                      .+..++.|+..|.+-..|+.. ..+.+ ......++.+++|+.+|..++.|-++|.|.+||....++++.+.-|+.+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            345678888888888888765 23222 3344568999999999999999999999999999988888888777666444


Q ss_pred             ---EEECCCCCEEEEeeCCCcEEEEec
Q 026765          197 ---IAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       197 ---i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                         +.+..++..+.++...|.  +|++
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence               445555566777777776  5654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.89  E-value=0.056  Score=35.32  Aligned_cols=91  Identities=20%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE-
Q 026765          121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI-  199 (233)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~-  199 (233)
                      +.|++|+.|..|++|+-.  +.+........+..+.-... ..++.+..+|+|-+|+-..  .+-.... ...+.++.+ 
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKS-K~~~~~~~~~   89 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKS-KNQVTSMAFY   89 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeecc-CCCeEEEEEE
Confidence            578999999999999843  45555555556666665433 6799999999999997521  1222222 223555543 


Q ss_pred             CCC--C-CEEEEeeCCCcEEE
Q 026765          200 DPM--G-RYFAVGSADSLVSL  217 (233)
Q Consensus       200 ~p~--~-~~las~s~dg~v~i  217 (233)
                      +.+  | .-|++|=.+|.|-+
T Consensus        90 D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   90 DINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cCCCCCceEEEEEecCCeEEe
Confidence            333  3 36888988888743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.86  E-value=0.13  Score=39.12  Aligned_cols=198  Identities=13%  Similarity=0.206  Sum_probs=102.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEE-EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s-~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+.+-...+..++|+|+.+.|++ ...++.|.-.+  ..+ ..+..+.+.+. .-.-.+++..+ ..++++--.++.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els--~~G-~vlr~i~l~g~-~D~EgI~y~g~-~~~vl~~Er~~~L   88 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELS--LDG-KVLRRIPLDGF-GDYEGITYLGN-GRYVLSEERDQRL   88 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEE--TT---EEEEEE-SS--SSEEEEEE-ST-TEEEEEETTTTEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEc--CCC-CEEEEEeCCCC-CCceeEEEECC-CEEEEEEcCCCcE
Confidence            3566677778999999998775554 44555554444  322 23444455553 33456666544 3455555558889


Q ss_pred             EEEECCCCe----e--eeeeee--c----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC---Ceeeeee---e------
Q 026765           92 RLWDARSGK----C--SQQAEL--S----GENINITYKPDGTHIAVGNRDDELTILDVRK---FKPIHRR---K------  147 (233)
Q Consensus        92 ~iwd~~~~~----~--~~~~~~--~----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~---~------  147 (233)
                      .++++....    .  ...+..  .    .....++|+|.++.++++-+..-..+|.+..   ...+...   .      
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            888873321    1  112221  1    1134699999988888887776666766543   1111110   0      


Q ss_pred             cCceeeEEEECCC-CCEEEEEeCCCeEEEEecCCceeeeEEeeec---------CceeEEEECCCCCEEEEeeCCCcEEE
Q 026765          148 FGYEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSL  217 (233)
Q Consensus       148 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~las~s~dg~v~i  217 (233)
                      .-..+..+.++|. +++++++..+..+..+| ..+++...+.-..         ...-.|+++++|+++++. +-+..++
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence            1124567777765 56777788888888888 5666655443221         235689999998766554 4444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.86  E-value=0.1  Score=41.04  Aligned_cols=144  Identities=15%  Similarity=0.178  Sum_probs=81.2

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeE-EEECCCCCeEEEEcCCCcEEEEEcCCCee---eeeeec
Q 026765           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRRKF  148 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~  148 (233)
                      .|.++.+.++.+--..+.|.-||..+++. ..+...+...+ ......+. |+++. . .+.+++......   +.....
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~-Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGR-LIACE-H-GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCe-EEEEc-c-ccEEEeccCCceeEEeccccC
Confidence            46666666667777778888888876643 33333333333 33344443 33332 2 244555443332   111111


Q ss_pred             ---CceeeEEEECCCCCEEEEEeC-----------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee-CCC
Q 026765          149 ---GYEVNEIAWNMTGEMFFLTTG-----------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADS  213 (233)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg  213 (233)
                         ....+.....++|.+.+....           .|.++.++. .+.....+..+-...+.|+||||++.|..+. ..+
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence               124567788899888776544           143444443 3444444444455568899999997765555 457


Q ss_pred             cEEEEecC
Q 026765          214 LVSLWDIS  221 (233)
Q Consensus       214 ~v~iwd~~  221 (233)
                      .|.-|++.
T Consensus       186 ~i~r~~~d  193 (307)
T COG3386         186 RIHRYDLD  193 (307)
T ss_pred             eEEEEecC
Confidence            78888776

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.85  E-value=0.2  Score=41.24  Aligned_cols=68  Identities=19%  Similarity=0.162  Sum_probs=40.9

Q ss_pred             ECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE
Q 026765          116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT  186 (233)
Q Consensus       116 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  186 (233)
                      ++.+....+....++.+.+.+-...+.   .....++..++.+|++++++.-..+|.+.+...+-.+.+..
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e  253 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCE  253 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEE
Confidence            333444444444445555444322111   22234788999999999999999999998887544433333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.019  Score=47.35  Aligned_cols=119  Identities=17%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             eeeeCccccEEEEEECcCCC--EE-----EEEeCCCCEEEEecccCCCCceeeEEEecCcC--cEEEEEEcCCCCCEEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGT--KL-----ASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQLCWDPKHADLIAT   84 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~--~l-----~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s   84 (233)
                      .++.-|.. |+.+.+.|+.+  +|     +.|-.|..|.-||+.-++..++...+.+....  ...|.+.  .+...|+.
T Consensus       370 eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~Ivv  446 (644)
T KOG2395|consen  370 EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVV  446 (644)
T ss_pred             eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeee--cCCceEEE
Confidence            34554554 88888988754  23     44667999999998654433322222222222  2334443  34557899


Q ss_pred             EeCCCeEEEEECCCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765           85 ASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDV  137 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (233)
                      ||.+|.||+||- .++...+..  +..++.-+..+.+|++|+..+. ..+.+.++
T Consensus       447 gS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  447 GSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             eecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            999999999997 343333322  2344555777889999876554 45555554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.72  E-value=0.12  Score=45.69  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=61.2

Q ss_pred             EEEEeCCCeEEEEECCCCe--eeeeee----ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-e-ecCceee
Q 026765           82 IATASGDKTVRLWDARSGK--CSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVN  153 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~--~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~~  153 (233)
                      .+.|-.+..+.-||.|-..  ++....    ......+++-..+| +||+|+.+|.|++||-- +..... + ..+.+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCee
Confidence            3468888999999988643  221110    11122345656555 78999999999999943 222222 2 2467899


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEe
Q 026765          154 EIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      .+..+.||+++++.+..- +.+++
T Consensus       623 ~iDvt~DGkwilaTc~ty-LlLi~  645 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTY-LLLID  645 (794)
T ss_pred             EEEecCCCcEEEEeecce-EEEEE
Confidence            999999999988877653 44444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.67  E-value=0.28  Score=40.38  Aligned_cols=198  Identities=14%  Similarity=0.196  Sum_probs=101.2

Q ss_pred             cEEEEEECcCCCEEEEE-eCCC----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--------
Q 026765           22 KVHSVAWNCTGTKLASG-SVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--------   88 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~-~~D~----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--------   88 (233)
                      .+...+++|+|+++|-+ +..|    ++++.|+...   ....-.+...  ....+.|.+++..++++...+        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            44467899999988644 4444    4899998753   2111122211  112389999877666665333        


Q ss_pred             --CeEEEEECCCCeee--eeeeecC--C-eeEEEECCCCCeEEEEcCC----CcEEEEEcCCC-----eeeeeeecCcee
Q 026765           89 --KTVRLWDARSGKCS--QQAELSG--E-NINITYKPDGTHIAVGNRD----DELTILDVRKF-----KPIHRRKFGYEV  152 (233)
Q Consensus        89 --~~i~iwd~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~-----~~~~~~~~~~~~  152 (233)
                        ..|..|.+.+....  ..+....  . ...+..++++++++.....    ..+.+.|+...     ...........+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence              24778888766432  2222222  2 3467889999998754432    34677777653     111111111122


Q ss_pred             -eEEEECCCCCEEEEEeC---CCeEEEEecCCcee---eeEEeeecCceeEEEECCCCCEEEE-eeCCC--cEEEEecCC
Q 026765          153 -NEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAV-GSADS--LVSLWDISE  222 (233)
Q Consensus       153 -~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~---~~~~~~~~~~v~~i~~~p~~~~las-~s~dg--~v~iwd~~~  222 (233)
                       ..+.. ..+.+++....   ++.+...++.....   ...+..+...+.-..+...+.+|+. ...++  .|+++|+..
T Consensus       280 ~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~  358 (414)
T PF02897_consen  280 EYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD  358 (414)
T ss_dssp             EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred             EEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC
Confidence             22222 24445544432   46666666655442   2244556654443444445555554 44454  488999883


Q ss_pred             cEE
Q 026765          223 MLC  225 (233)
Q Consensus       223 ~~~  225 (233)
                      +..
T Consensus       359 ~~~  361 (414)
T PF02897_consen  359 GKE  361 (414)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.51  E-value=0.26  Score=38.00  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee----
Q 026765           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA----  105 (233)
Q Consensus        30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~----  105 (233)
                      ..++.|+.|..+| +.+++... ......   . .+...|..+...|+-..+++  -.|+.+.++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~-~~~~~~---i-~~~~~I~ql~vl~~~~~llv--Lsd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSD-PSKPTR---I-LKLSSITQLSVLPELNLLLV--LSDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecC-Ccccee---E-eecceEEEEEEecccCEEEE--EcCCccEEEEchhhcccccccccc
Confidence            4578899998888 88888721 111111   1 12234888888876543333  34699999998653322210    


Q ss_pred             ---------ee--cCCeeEEE--ECCCCCeEEEEcCCCcEEEEEcCC----C-eeeeeeecCceeeEEEECCCCCEEEEE
Q 026765          106 ---------EL--SGENINIT--YKPDGTHIAVGNRDDELTILDVRK----F-KPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus       106 ---------~~--~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                               ..  .......+  -.+.+...++.....++.+|....    . ...........+..+.|.  ++.++++
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence                     11  11111122  123344444455555888887644    2 344555556678888886  6677777


Q ss_pred             eCCCeEEEEecCCcee
Q 026765          168 TGNGTVEVLTYPSLRP  183 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~  183 (233)
                      ..++ ..++|+.++..
T Consensus       155 ~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSP  169 (275)
T ss_pred             eCCc-eEEEecCCCCc
Confidence            7554 67778775443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.42  E-value=0.036  Score=44.61  Aligned_cols=90  Identities=10%  Similarity=0.107  Sum_probs=54.0

Q ss_pred             CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee-EEee-------e---------cC
Q 026765          130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVA-------H---------TA  192 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-------~---------~~  192 (233)
                      +.+.++|+.+.+..........+....|+|+|+.++... ++.+.+.+..+.+... +..+       -         -+
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~  101 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD  101 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence            467889998765443322234577889999999988776 4678888876553321 1111       0         01


Q ss_pred             ceeEEEECCCCCEEEEeeC-CCcEEEEec
Q 026765          193 GCYCIAIDPMGRYFAVGSA-DSLVSLWDI  220 (233)
Q Consensus       193 ~v~~i~~~p~~~~las~s~-dg~v~iwd~  220 (233)
                      .-..+-||||+++||.... +..|+.+.+
T Consensus       102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen  102 RRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             SSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             cccceEECCCCCEEEEEEECCcCCceEEe
Confidence            1246789999999987764 455555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.035  Score=49.58  Aligned_cols=93  Identities=17%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCee--eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-Cc---eee
Q 026765           80 DLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GY---EVN  153 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~---~~~  153 (233)
                      ..++.|+..|.+-..|+...-+  .+-....+++.+++|+.+|+.++.|-.+|.|.+||+...++.+.... +.   .+-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            4577788888888888765322  22333456788999999999999999999999999987766655432 22   233


Q ss_pred             EEEECCCCCEEEEEeCCCe
Q 026765          154 EIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~  172 (233)
                      .+.+...+..++++...|.
T Consensus       180 ~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc
Confidence            4455555555666666664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.39  E-value=0.44  Score=39.26  Aligned_cols=112  Identities=13%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             EEEEEEcCCCCCEEEEEeCCC----eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-----------cEE
Q 026765           69 VDQLCWDPKHADLIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------ELT  133 (233)
Q Consensus        69 v~~~~~~~~~~~~l~sg~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~  133 (233)
                      +....++|++..++++-+..|    .+++.|+.+++.............+.|.++++.++....+.           .+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            345788998766665544444    48999999987654321111112399999988876554332           266


Q ss_pred             EEEcCCCee----eeeeecCce-eeEEEECCCCCEEEEEeCC----CeEEEEecCC
Q 026765          134 ILDVRKFKP----IHRRKFGYE-VNEIAWNMTGEMFFLTTGN----GTVEVLTYPS  180 (233)
Q Consensus       134 i~d~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~  180 (233)
                      .|++.+...    +........ ...+..+++++++++....    ..+.+.+...
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            677665432    222222222 4567889999998765432    3456666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=96.26  E-value=0.37  Score=40.63  Aligned_cols=140  Identities=11%  Similarity=0.077  Sum_probs=69.0

Q ss_pred             CCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeE-EEECCCCCeEEEEcCCC---cEEEEEcCCCeeeeeeecCcee
Q 026765           79 ADLIATASGD--KTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEV  152 (233)
Q Consensus        79 ~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~  152 (233)
                      +.+.+.||.+  ..+..||..+++............. ....-+++..+.|+.++   .+..||.++.+.........+.
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            4566777754  3577888776654332222211111 11123566667777553   4677888765543322221111


Q ss_pred             -eEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCC-----CcEEEEecCCc
Q 026765          153 -NEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEM  223 (233)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-----g~v~iwd~~~~  223 (233)
                       .......+++..+.|+   .+.+||..+.  +.+..+....... +++. .+++..+.|+.+     ..|..||..+.
T Consensus       399 ~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        399 YKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence             1112223566666663   4677776542  2222221111111 2222 356788888865     35777777654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.18  E-value=0.47  Score=41.00  Aligned_cols=97  Identities=15%  Similarity=0.314  Sum_probs=62.8

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeee--cCCeeEEEE--CCCCCeEEEEcCCCcEEEEEcC---------CCeeeeee
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITY--KPDGTHIAVGNRDDELTILDVR---------KFKPIHRR  146 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~  146 (233)
                      +..+.-+....+.|||.+.+.......+  .+.+..+.|  .|++..+++.+....|.+|--.         +..++...
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            3434444456799999999886655555  566666766  6889999888888888887531         11222222


Q ss_pred             e----cCceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765          147 K----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (233)
Q Consensus       147 ~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  178 (233)
                      .    ..+++....|-++|.+++..+  +.+.+++-
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            1    236788899988886555443  35666653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=96.10  E-value=0.34  Score=41.37  Aligned_cols=142  Identities=11%  Similarity=0.109  Sum_probs=69.0

Q ss_pred             CCEEEEEeCC-----CeEEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCC------CcEEEEEcCCCeeeee
Q 026765           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHR  145 (233)
Q Consensus        79 ~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~  145 (233)
                      +.+++.||.+     ..+..||..+.+.........+  ..+++. -+++..+.|+.+      ..+..||+.+.+....
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            4577777765     3466788877654432222111  112222 345566666632      3477888876544322


Q ss_pred             eecCcee-eEEEECCCCCEEEEEeCC--------CeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCC--
Q 026765          146 RKFGYEV-NEIAWNMTGEMFFLTTGN--------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD--  212 (233)
Q Consensus       146 ~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~d--  212 (233)
                      .....+. ...+...+++.++.|+.+        ..+.+||..+.  ..+..+.........+.+  +++.++.|+.+  
T Consensus       422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~  499 (534)
T PHA03098        422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE  499 (534)
T ss_pred             CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence            1111110 111122355666666542        23677776543  222211111111112223  56777777764  


Q ss_pred             ---CcEEEEecCCc
Q 026765          213 ---SLVSLWDISEM  223 (233)
Q Consensus       213 ---g~v~iwd~~~~  223 (233)
                         ..|.+||..+.
T Consensus       500 ~~~~~v~~yd~~~~  513 (534)
T PHA03098        500 YYINEIEVYDDKTN  513 (534)
T ss_pred             cccceeEEEeCCCC
Confidence               46888888765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.07  E-value=0.047  Score=28.98  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=27.7

Q ss_pred             CcEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCC
Q 026765           67 DSVDQLCWDPKHA--DLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        67 ~~v~~~~~~~~~~--~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ++|.++.|+|...  .+|+.+-.-+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3688999998766  78888888899999999853

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.06  E-value=0.031  Score=41.26  Aligned_cols=104  Identities=15%  Similarity=0.186  Sum_probs=54.6

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--  109 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--  109 (233)
                      +..++.|..||.|.+|..+..+.  .... ...-...|.++--..+.+.+..++++|+.|+.|++.-.+.......+.  
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~--~~d~-~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGA--HSDR-VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccch--HHHh-hhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence            45678888999999998753221  1100 111112333222222333478899999999999998766544333222  


Q ss_pred             CeeEEEECCCCCeEEEE--cCCCcEEEEEcC
Q 026765          110 ENINITYKPDGTHIAVG--NRDDELTILDVR  138 (233)
Q Consensus       110 ~~~~~~~~~~~~~l~~~--~~d~~i~i~d~~  138 (233)
                      +.........++.+...  +.|..++.|++.
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchh
Confidence            11122222333344443  444455555554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.06  E-value=0.34  Score=41.78  Aligned_cols=186  Identities=17%  Similarity=0.218  Sum_probs=95.5

Q ss_pred             cCCCEEEEEeCCC------CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC------CeEEEEECC
Q 026765           30 CTGTKLASGSVDQ------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDAR   97 (233)
Q Consensus        30 ~~~~~l~s~~~D~------~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d------~~i~iwd~~   97 (233)
                      ..+..++.||.++      +|..+|...+  .+.....++ +...-.+++...  +.+.++||.|      ..+-.||.+
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecCC
Confidence            3456677888773      5677776542  122211222 233344455543  3677899998      355678888


Q ss_pred             CCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCCc-----EEEEEcCCCeeeeeeecCce-eeEEEECCCCCEEEEEeC
Q 026765           98 SGKCSQQAELSGEN--INITYKPDGTHIAVGNRDDE-----LTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        98 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (233)
                      ..+...........  ..++. -+|...++|+.||.     +..||.++.+....-.+... -..-....+|+..++|+.
T Consensus       358 ~~~W~~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CCceeccCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence            77654422222211  12222 26677888988863     66788766443322222111 111122346777788775


Q ss_pred             CC------eEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCCCc-----EEEEecCCc
Q 026765          170 NG------TVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-----VSLWDISEM  223 (233)
Q Consensus       170 ~~------~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~-----v~iwd~~~~  223 (233)
                      ++      .+..||..+.  +.+..+..-... ..++ .-++.+++.|+.|+.     |..||..+.
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCC
Confidence            43      4566665432  222111111111 1122 235678888887763     666776654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.06  E-value=0.76  Score=38.87  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE------------------cCCCcEEEEEcCCCee
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG------------------NRDDELTILDVRKFKP  142 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~~~~~  142 (233)
                      +++.++.+|.+...|.++++..-......  ..++.+|  ..+..+                  ..++.+.-+|+.+++.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~  378 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV  378 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence            56788899999999999998665443321  1123333  222222                  2356788888888877


Q ss_pred             eeeeecC---------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765          143 IHRRKFG---------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       143 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  189 (233)
                      +.+....         .+...-.....++.+++++.+|.++.+|.++++.+-++..
T Consensus       379 ~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         379 VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            6655543         1111001112567888889999999999999988776553

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.06  E-value=0.54  Score=37.10  Aligned_cols=194  Identities=12%  Similarity=0.035  Sum_probs=102.3

Q ss_pred             EECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-
Q 026765           27 AWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-  104 (233)
Q Consensus        27 ~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-  104 (233)
                      .|.++...| .+--..+.|.-|+....   ......   +...+.++..-..+ ..|+++ . .-+.+++...+..... 
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g---~~~~~~---~p~~~~~~~~~d~~-g~Lv~~-~-~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETG---KKRVFP---SPGGFSSGALIDAG-GRLIAC-E-HGVRLLDPDTGGKITLL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcC---ceEEEE---CCCCcccceeecCC-CeEEEE-c-cccEEEeccCCceeEEe
Confidence            466766644 34345677777776421   222222   22333333332233 344443 2 3466667655544221 


Q ss_pred             eeec-C----CeeEEEECCCCCeEEEEcC-----C----CcEEEEEcC-CCeeeeeeec-CceeeEEEECCCCCEEEEEe
Q 026765          105 AELS-G----ENINITYKPDGTHIAVGNR-----D----DELTILDVR-KFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus       105 ~~~~-~----~~~~~~~~~~~~~l~~~~~-----d----~~i~i~d~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (233)
                      .... +    ....+...|+|.+.+....     .    ..-.+|-+. ....+..... -...+.++|+|+++.+..+.
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence            1111 1    1234777888887665444     1    112344433 2222222221 23468899999998887775


Q ss_pred             C-CCeEEEEecCC--ceeee-----EEeeecCceeEEEECCCCCEEEEeeCCC-cEEEEecCCcEEEEeee
Q 026765          169 G-NGTVEVLTYPS--LRPLD-----TVVAHTAGCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 ~-~~~v~~~~~~~--~~~~~-----~~~~~~~~v~~i~~~p~~~~las~s~dg-~v~iwd~~~~~~i~~~~  230 (233)
                      . .+.+..+++..  +....     .+....+..-.++...+|.+.+++-.+| .|.+|+.+ ++.+.++.
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            4 58888887752  11111     1111223445677888888886555554 89999999 87777653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.03  E-value=0.48  Score=36.26  Aligned_cols=157  Identities=14%  Similarity=0.092  Sum_probs=98.0

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeeeeeecCCee--EEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765           68 SVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENI--NITYKPDGTHIAVGNRDDELTILDVRKFKPI  143 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  143 (233)
                      -...+.|..+ +.++-|.+.-|  .|+.+|+.+++......+....+  .+.... ++.....=.++...+||..+.+.+
T Consensus        46 FTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            3557777444 35666766655  68899999998776666554433  244332 234445556788999999999888


Q ss_pred             eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecC-----ceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA-----GCYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                      .......+-..++  .+++.++.+.+...+.++|..+.+..+.+.....     .++.+.+- +|...|=-=....|..-
T Consensus       124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            7776655555555  5788999999999999999888877766654321     34455554 45555544455667777


Q ss_pred             ecCCcEEEEee
Q 026765          219 DISEMLCVRTF  229 (233)
Q Consensus       219 d~~~~~~i~~~  229 (233)
                      |..+|.++..+
T Consensus       201 dp~tG~V~~~i  211 (264)
T PF05096_consen  201 DPETGKVVGWI  211 (264)
T ss_dssp             ETTT-BEEEEE
T ss_pred             eCCCCeEEEEE
Confidence            88888776554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.03  E-value=0.74  Score=39.85  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--CceeeEEEE--CCCCCEEEEEeCCCeEEEEecC---------Cceee
Q 026765          118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYP---------SLRPL  184 (233)
Q Consensus       118 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~---------~~~~~  184 (233)
                      .-++..++......+.|||.+.........+  ...|..+.|  .|+++.+++.+-...|.+|.-.         ...++
T Consensus        39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            3333333444446799999988775544444  557888888  4778888888888888888531         22334


Q ss_pred             eEE--eeec-CceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          185 DTV--VAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       185 ~~~--~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      +.+  ..|+ .+|.+..|.++|..++.++  +.+.|+|-
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            443  2344 5788899999987766443  55777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.87  E-value=0.57  Score=35.87  Aligned_cols=146  Identities=14%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE-cCCCe--eee
Q 026765           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD-VRKFK--PIH  144 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~--~~~  144 (233)
                      .+.+.+++++++.+.+....++.-.+|-...+..............-.|++++...+....+....++. .....  .+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            577888999876655544333333444333333222222222344567888977666666555555553 22221  111


Q ss_pred             ee-e-cCceeeEEEECCCCCEEEEEe---CCCeEEEEecC---Cc------eeeeEEeeecCceeEEEECCCCCEEEEee
Q 026765          145 RR-K-FGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYP---SL------RPLDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       145 ~~-~-~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~---~~------~~~~~~~~~~~~v~~i~~~p~~~~las~s  210 (233)
                      .. . ....|..+.++|||..++...   .++.+.+--..   .+      .+..........+..++|.+++.+++.+.
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence            11 1 112799999999999988766   34666665432   22      11111112345788999999998877666


Q ss_pred             CCC
Q 026765          211 ADS  213 (233)
Q Consensus       211 ~dg  213 (233)
                      ..+
T Consensus       185 ~~~  187 (253)
T PF10647_consen  185 SAG  187 (253)
T ss_pred             CCC
Confidence            443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.85  E-value=0.83  Score=37.59  Aligned_cols=41  Identities=27%  Similarity=0.324  Sum_probs=34.1

Q ss_pred             CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ..+.+|..+|.+++.|+...=|.|.++|+..+..++-++++
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY  348 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY  348 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence            34678999999988888777799999999999888876654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.78  E-value=0.63  Score=35.63  Aligned_cols=180  Identities=17%  Similarity=0.180  Sum_probs=103.7

Q ss_pred             cEEEEEECcCCCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           22 KVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ..-.+.|..+|.++-|.|.-|  .|+.+|+.+..  ......++. .----.++..  +.++..---.++...+||..+-
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccc
Confidence            345778877888888888666  67777776422  222233322 1111223332  2234444466788899999988


Q ss_pred             eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---Cc---eeeEEEECCCCCEEEEEeCCCeE
Q 026765          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GY---EVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      +...++...++...++  .++..|+....+..+..+|..+.+.......   +.   .++.+.+- +|...+=.=....|
T Consensus       121 ~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  121 KKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             eEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            8888888778888777  4566777777778899999888776655443   22   24555553 44433333345667


Q ss_pred             EEEecCCceeeeEEee---------------ecCceeEEEECCCCCE-EEEe
Q 026765          174 EVLTYPSLRPLDTVVA---------------HTAGCYCIAIDPMGRY-FAVG  209 (233)
Q Consensus       174 ~~~~~~~~~~~~~~~~---------------~~~~v~~i~~~p~~~~-las~  209 (233)
                      ..+|..+++....+..               ...-.+.||++|.... ++||
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7777777766554421               0233689999987654 5565

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.78  E-value=0.64  Score=40.10  Aligned_cols=142  Identities=16%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             CCEEEEEeCCCe-----EEEEECCCCeeeeeeeecCCeeEEE-ECCCCCeEEEEcCCC------cEEEEEcCCCeeeeee
Q 026765           79 ADLIATASGDKT-----VRLWDARSGKCSQQAELSGENINIT-YKPDGTHIAVGNRDD------ELTILDVRKFKPIHRR  146 (233)
Q Consensus        79 ~~~l~sg~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~  146 (233)
                      +.+.+.||.||.     +-.||..+.+..............+ ..-+|...++|+.++      .+..||..+.......
T Consensus       381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~  460 (571)
T KOG4441|consen  381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA  460 (571)
T ss_pred             CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence            467788988864     5667777665433222211111111 123666777787554      4667887765443322


Q ss_pred             ecCc--eeeEEEECCCCCEEEEEeCCC-----eEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCC----
Q 026765          147 KFGY--EVNEIAWNMTGEMFFLTTGNG-----TVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----  213 (233)
Q Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg----  213 (233)
                      .+..  .-..++ .-++..+++|+.++     ++..||..+.+  .+..+......+-.+.+  +++..+.|+.||    
T Consensus       461 ~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  461 PMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL  537 (571)
T ss_pred             CcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccc
Confidence            2211  111111 23667777777665     36667765432  22111112222222233  456788888776    


Q ss_pred             -cEEEEecCCc
Q 026765          214 -LVSLWDISEM  223 (233)
Q Consensus       214 -~v~iwd~~~~  223 (233)
                       +|..||..+.
T Consensus       538 ~~ve~ydp~~d  548 (571)
T KOG4441|consen  538 NTVECYDPETD  548 (571)
T ss_pred             ceeEEcCCCCC
Confidence             4666766554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.76  E-value=0.91  Score=38.56  Aligned_cols=149  Identities=11%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             cEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC----CeEEEEcCCCcEEEEEcCC--
Q 026765           68 SVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG----THIAVGNRDDELTILDVRK--  139 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~--  139 (233)
                      ++..++|. +|..++++.-  .+|.+++=|   .+.+..+   ..+..+.|.|-+    .-+++....+.+.+|-+..  
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            67788886 4555555543  223333221   1122222   235568887742    2344555566799998742  


Q ss_pred             ---Ceeeeee--ec--Cce--eeEEEECCCCCEEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765          140 ---FKPIHRR--KF--GYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       140 ---~~~~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~  209 (233)
                         .+.+...  ..  ..+  ...+.|||....+++-.....-.+++.. +...++.=....+.|.|..|.+||+.|+.+
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence               2222111  11  112  3467899999988887776655555543 222222222345678999999999987654


Q ss_pred             e-CCCcEEEEecCCc
Q 026765          210 S-ADSLVSLWDISEM  223 (233)
Q Consensus       210 s-~dg~v~iwd~~~~  223 (233)
                      - ..=.-+|||-.+.
T Consensus       174 vGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  174 VGSSLHSYIWDSAQK  188 (671)
T ss_pred             eCCeEEEEEecCchh
Confidence            3 3345789986543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.55  E-value=1.3  Score=37.81  Aligned_cols=190  Identities=13%  Similarity=0.096  Sum_probs=103.5

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC--cE-------EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SV-------DQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~--~v-------~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  102 (233)
                      +..++.++.++.|.-.|..+..  .+..........  ..       ..+++.  + ..++.++.|+.+.-.|..+++..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEE
Confidence            4567777777877777765422  111111111100  00       112222  2 24567788999999999999876


Q ss_pred             eeeeecCCe--eEEEECC---CCCeEEEEc------CCCcEEEEEcCCCeeeeeeecCc---------------------
Q 026765          103 QQAELSGEN--INITYKP---DGTHIAVGN------RDDELTILDVRKFKPIHRRKFGY---------------------  150 (233)
Q Consensus       103 ~~~~~~~~~--~~~~~~~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~---------------------  150 (233)
                      -........  ..+.-+|   ++ .++++.      .++.+..+|.++++.+.......                     
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            544322111  1111111   33 444443      25788888988777654422110                     


Q ss_pred             ------------eeeEEEECCCCCEEEEEeCC-----C-----------eEEEEecCCceeeeEEee--ec-------Cc
Q 026765          151 ------------EVNEIAWNMTGEMFFLTTGN-----G-----------TVEVLTYPSLRPLDTVVA--HT-------AG  193 (233)
Q Consensus       151 ------------~~~~~~~~~~~~~~~~~~~~-----~-----------~v~~~~~~~~~~~~~~~~--~~-------~~  193 (233)
                                  ......+.+..+++..+.++     +           .+.-.|.++++..-.+..  |+       ..
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                        01123555556677776644     1           455566677766544332  22       11


Q ss_pred             eeEEEECCCCC---EEEEeeCCCcEEEEecCCcEEEE
Q 026765          194 CYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       194 v~~i~~~p~~~---~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      ..-+.+..+|+   .++.+..+|.+.+.|.++|+.+.
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            12233445665   78899999999999999999873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.50  E-value=0.86  Score=35.30  Aligned_cols=159  Identities=13%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (233)
                      +.|-...+.++.|+|+...++ +-.....-.|+=..+|+..+.....+  ....+.+..++.+.++--.+..+.++.+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            345556699999999875554 44455555555455677777665543  334577777777777777788888776644


Q ss_pred             Ceeee-----eeec------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE---Eeeec-------CceeEEE
Q 026765          140 FKPIH-----RRKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT---VVAHT-------AGCYCIA  198 (233)
Q Consensus       140 ~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~-------~~v~~i~  198 (233)
                      ...+.     ..+.      +..-..++|.+..+.++.+-+..-+.+|.......-..   ...+.       ..|.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            32111     1111      23456899999999999998888888887643221100   11111       2355677


Q ss_pred             ECCCC-CEEEEeeCCCcEEEEecC
Q 026765          199 IDPMG-RYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       199 ~~p~~-~~las~s~dg~v~iwd~~  221 (233)
                      |++.. ..|+.+.+++.+.-.|..
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC
Confidence            88644 556667677877777765

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.28  E-value=1.6  Score=37.14  Aligned_cols=146  Identities=18%  Similarity=0.292  Sum_probs=86.5

Q ss_pred             cccEEEEEECcCCCEE-EEEe--CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC----CCEEEEEeCCCeEE
Q 026765           20 KKKVHSVAWNCTGTKL-ASGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----ADLIATASGDKTVR   92 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l-~s~~--~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~sg~~d~~i~   92 (233)
                      --+|+.++|. ||+++ +|.-  .+|.++.=|      ..     .-|.-..|..++|.|-+    +.+| +-.-.+.|.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd------s~-----viGqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVt   85 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD------SK-----VIGQFEHVHGLSWAPPCTADTPALL-AVQHKKHVT   85 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC------cc-----EeeccceeeeeeecCcccCCCCceE-EEeccceEE
Confidence            3478899996 66654 4432  233333211      11     12344578999998853    3455 456778999


Q ss_pred             EEECCCC-----ee--eeeeeec----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeeeeeecCceeeEEEECC
Q 026765           93 LWDARSG-----KC--SQQAELS----GENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNM  159 (233)
Q Consensus        93 iwd~~~~-----~~--~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~  159 (233)
                      ||-+...     +.  .++.+..    --...+.|+|....+++=.....-.+++++..  +..-.++....|.+.+|.+
T Consensus        86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~  165 (671)
T PF15390_consen   86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK  165 (671)
T ss_pred             EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC
Confidence            9987522     11  1222221    12345789999888876555544445555432  2222344456789999999


Q ss_pred             CCCEEEEEeCC-CeEEEEec
Q 026765          160 TGEMFFLTTGN-GTVEVLTY  178 (233)
Q Consensus       160 ~~~~~~~~~~~-~~v~~~~~  178 (233)
                      ||+.++++.++ =.-++||-
T Consensus       166 DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecC
Confidence            99999888765 23445553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.24  E-value=0.16  Score=43.55  Aligned_cols=73  Identities=12%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             CCCCEEEEEeCCCeEEEEecCC----ceeeeEE--eee--------------------cCceeEEEECC----CCCEEEE
Q 026765          159 MTGEMFFLTTGNGTVEVLTYPS----LRPLDTV--VAH--------------------TAGCYCIAIDP----MGRYFAV  208 (233)
Q Consensus       159 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~--~~~--------------------~~~v~~i~~~p----~~~~las  208 (233)
                      .+...++++..||.+..+....    +......  ..+                    ...+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888888888776643    1111100  000                    12345566666    6789999


Q ss_pred             eeCCCcEEEEecCCcEEEEeeec
Q 026765          209 GSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       209 ~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      -+.|+++|+||+.++.|++++.-
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999888753

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.22  E-value=1.2  Score=39.47  Aligned_cols=82  Identities=22%  Similarity=0.225  Sum_probs=55.6

Q ss_pred             cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc---------e---eeeEEe--------eecCceeEEEECCCC---C
Q 026765          148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---------R---PLDTVV--------AHTAGCYCIAIDPMG---R  204 (233)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~---~~~~~~--------~~~~~v~~i~~~p~~---~  204 (233)
                      ..++|..+..+++|..+++.+..|-..+.-.+..         +   ..+++.        .+...|..+.|+|.+   .
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3468999999999999999988765544432211         0   011111        123467789999974   7


Q ss_pred             EEEEeeCCCcEEEEecCCc-EEEEee
Q 026765          205 YFAVGSADSLVSLWDISEM-LCVRTF  229 (233)
Q Consensus       205 ~las~s~dg~v~iwd~~~~-~~i~~~  229 (233)
                      +|+.=..|+++|+||+.+. .+.+++
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCCeEEE
Confidence            9999999999999999753 344433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.06  E-value=0.14  Score=27.25  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=26.0

Q ss_pred             ceeEEEECCCC---CEEEEeeCCCcEEEEecCCcE
Q 026765          193 GCYCIAIDPMG---RYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       193 ~v~~i~~~p~~---~~las~s~dg~v~iwd~~~~~  224 (233)
                      .+.+++|+|..   .+|+-+-.-|.|.|+|++++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF   36 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence            57899999854   478888788999999999643

It contains a characteristic DLL sequence motif.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.99  E-value=1.4  Score=34.98  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             CEEEEEeCCCCEEEEecccCCCCceeeEE-EecCcCcEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCeee--eeeeec
Q 026765           33 TKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCS--QQAELS  108 (233)
Q Consensus        33 ~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~~h~~~v~-~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~  108 (233)
                      ..+.+-|.||++....++..+.......+ +....+++. .-++...+ ..++--+.+|.|.--|+......  ..+..-
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            45777888999888877654432211111 111122221 11222222 23444678888888887655422  122210


Q ss_pred             -----------CCeeEEEECCCCCeEEEEcC--------CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765          109 -----------GENINITYKPDGTHIAVGNR--------DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus       109 -----------~~~~~~~~~~~~~~l~~~~~--------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                                 +.-.-+++++..++|.+-..        |+  .|.++|+.+.+.+.+.....++.++..+.+.+-++.+
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                       11123677766555544221        21  4777899999999988888889999999988755433


Q ss_pred             --eCCCeEEEEecCCceeeeEEee
Q 026765          168 --TGNGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       168 --~~~~~v~~~~~~~~~~~~~~~~  189 (233)
                        ..++.+.++|..+++.+.++..
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE--
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhc
Confidence              4578999999999998887764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.79  E-value=1.3  Score=33.34  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC--CCEEEEe
Q 026765          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM--GRYFAVG  209 (233)
Q Consensus       132 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~las~  209 (233)
                      =.++|+++.++...    .....++...+|+++++.-..+++.-.|..+++.+.++.-....|+|++|.-.  .-+.+|+
T Consensus       198 ~~i~dlrk~~~~e~----~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  198 KVIFDLRKSQPFES----LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             ceeEEeccCCCcCC----CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            34677766433321    12234444668888888888999999999999999998888889999999643  2344555


Q ss_pred             eCC
Q 026765          210 SAD  212 (233)
Q Consensus       210 s~d  212 (233)
                      ..+
T Consensus       274 aa~  276 (310)
T KOG4499|consen  274 AAK  276 (310)
T ss_pred             hhc
Confidence            443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.70  E-value=1.5  Score=36.72  Aligned_cols=142  Identities=14%  Similarity=0.135  Sum_probs=86.0

Q ss_pred             CCCCEE-EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCC-------eEEEEcCCCcEEEEEcCCCe-eeeeee
Q 026765           77 KHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFK-PIHRRK  147 (233)
Q Consensus        77 ~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~-~~~~~~  147 (233)
                      +++.+| ..|+....+.--|+..|+.+..+..+..+ -+.|.|..+       .-++|-.+..+.-.|.|-.. .+....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            344444 45666667777788888888888776655 566766432       33566677766666765322 221111


Q ss_pred             cCceee----EEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          148 FGYEVN----EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       148 ~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      ...-.+    +........++++++..|.+++||.-.-+.-..+.+-+..|..|..+.+|+++.+.+. ..+.+-|+
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            111111    1122334568999999999999995432222334566778889999999998655443 34555554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.64  E-value=0.0036  Score=51.01  Aligned_cols=142  Identities=15%  Similarity=0.272  Sum_probs=96.3

Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCcEEEEEcCCCeeeeeeec-
Q 026765           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKF-  148 (233)
Q Consensus        71 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-  148 (233)
                      ...|-|.+.+ ++.++.+-.+..||-.. +.......++...+++|+.++..+++ +...+.+.+||+.+.... +... 
T Consensus        39 ~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~g  115 (615)
T KOG2247|consen   39 IHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESG  115 (615)
T ss_pred             eeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhcc
Confidence            3467777766 55677888889998643 33334445556667888888877664 455688999998643211 1111 


Q ss_pred             -CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          149 -GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       149 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                       .....-+.|++.....+.+.-.|.+.+++..+.+.+...-.|...+.++++.+.+ +.+.++.|..+.
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~  183 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS  183 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence             1122236788888899999899999999988776655544488899999999965 455566565443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.48  E-value=2.4  Score=35.07  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEc---CCCCCEEEEEeCCCeEEEEECCCC--e-----
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWD---PKHADLIATASGDKTVRLWDARSG--K-----  100 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~---~~~~~~l~sg~~d~~i~iwd~~~~--~-----  100 (233)
                      ...++.||..|.+||+++....... -..++. .-..+|..++.-   +......++--.-+.+.||.+...  .     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            4689999999999999985433211 111111 234677777653   222222334466677888877221  1     


Q ss_pred             -----eeeeeeecCCeeEEEEC----CC-CCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765          101 -----CSQQAELSGENINITYK----PD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       101 -----~~~~~~~~~~~~~~~~~----~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                           ......++....+++.-    .. ...+++=+.||.+.+|+-+..--......-.-...+.+.+.-+.+++.+.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence                 11122223333344332    12 357788899999999996543211111111123345555666666666666


Q ss_pred             CeEEEEec
Q 026765          171 GTVEVLTY  178 (233)
Q Consensus       171 ~~v~~~~~  178 (233)
                      ..+..|.+
T Consensus       196 ~~l~~Yky  203 (418)
T PF14727_consen  196 WTLECYKY  203 (418)
T ss_pred             eeEEEecH
Confidence            55655543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.46  E-value=1.7  Score=33.31  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             eeEEEECCCCCeEEEEc--C-CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe-cCCceeee-
Q 026765          111 NINITYKPDGTHIAVGN--R-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT-YPSLRPLD-  185 (233)
Q Consensus       111 ~~~~~~~~~~~~l~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-  185 (233)
                      ....++++++..++...  . ...+.++...  ........+..+..-.|++++..+.+...+....++. ...++... 
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            45678899998776554  2 2334444432  2222222334566668899988888877777766664 22222111 


Q ss_pred             EEee-ec-CceeEEEECCCCCEEEEee---CCCcEEEEec
Q 026765          186 TVVA-HT-AGCYCIAIDPMGRYFAVGS---ADSLVSLWDI  220 (233)
Q Consensus       186 ~~~~-~~-~~v~~i~~~p~~~~las~s---~dg~v~iwd~  220 (233)
                      .+.. .. ..|..+++||||..+|.-.   .++.|.|=-+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            1111 11 2799999999999877655   3455655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.32  E-value=2.6  Score=34.86  Aligned_cols=146  Identities=10%  Similarity=0.080  Sum_probs=79.7

Q ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCe-----eeeeeeecCCeeEEE---ECC-CCCeEEEEcCCCcEEEEEcCCCe----
Q 026765           75 DPKHADLIATASGDKTVRLWDARSGK-----CSQQAELSGENINIT---YKP-DGTHIAVGNRDDELTILDVRKFK----  141 (233)
Q Consensus        75 ~~~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~d~~i~i~d~~~~~----  141 (233)
                      ++++...|+.|+..|.++||+-..+.     ..-+.....++..+.   |.+ .....++.-.-.++.+|.+....    
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            34456788999999999999875433     222233344454443   212 12222223444567777762211    


Q ss_pred             ------eeeeeec--CceeeEEEECC----C-CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765          142 ------PIHRRKF--GYEVNEIAWNM----T-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       142 ------~~~~~~~--~~~~~~~~~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                            ....+.+  ......+...+    . ..++++-+-||.+.+++-+.......+.. ---.-.+.|.|....|++
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence                  0111111  11222233222    2 36788889999999998765332222222 212235677787788888


Q ss_pred             eeCCCcEEEEecC
Q 026765          209 GSADSLVSLWDIS  221 (233)
Q Consensus       209 ~s~dg~v~iwd~~  221 (233)
                      ++.+..+.-|...
T Consensus       192 ~sss~~l~~Yky~  204 (418)
T PF14727_consen  192 ASSSWTLECYKYQ  204 (418)
T ss_pred             ecCceeEEEecHH
Confidence            8888777777653

>PHA02713 hypothetical protein; Provisional

Probab=94.29  E-value=2.5  Score=36.50  Aligned_cols=91  Identities=8%  Similarity=0.059  Sum_probs=45.8

Q ss_pred             CCEEEEEeCC------CeEEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCCC-----cEEEEEcCCCeeeee
Q 026765           79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHR  145 (233)
Q Consensus        79 ~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~  145 (233)
                      +.+++.||.+      ..+..||..+............  ...++ .-+++..+.||.++     .+..||..+.+....
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            4567777754      3467888877654322211111  11222 23566777777653     477899876544322


Q ss_pred             eecCceee-EEEECCCCCEEEEEeCC
Q 026765          146 RKFGYEVN-EIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       146 ~~~~~~~~-~~~~~~~~~~~~~~~~~  170 (233)
                      .....+.. ......+++..+.|+.+
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCC
Confidence            22211111 11112367777777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.17  E-value=3.3  Score=35.51  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=37.1

Q ss_pred             cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  189 (233)
                      .+.-+|+.+++.....+...+...-.....+..++.++.+|.++.+|.++++.+-.+..
T Consensus       442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       442 SLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            45566766666555444332211111112455777788899999999999998877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.14  E-value=0.37  Score=25.07  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEE
Q 026765           76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY  116 (233)
Q Consensus        76 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  116 (233)
                      |++..++++.-.++.|.++|..+++..........+..+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            34555666666788999999988877666655444444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.10  E-value=2.6  Score=34.02  Aligned_cols=142  Identities=18%  Similarity=0.324  Sum_probs=67.9

Q ss_pred             cEEEEEEcCCCCCEE-EEEeCCC---eEEEEECCCCeeeeeeeecCC-----eeEEEEC-CCCCeE-EEEcCCCcEE--E
Q 026765           68 SVDQLCWDPKHADLI-ATASGDK---TVRLWDARSGKCSQQAELSGE-----NINITYK-PDGTHI-AVGNRDDELT--I  134 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l-~sg~~d~---~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l-~~~~~d~~i~--i  134 (233)
                      .+..+.|.+++..++ ...+.+.   .+.+.|..++.+.........     .....+. +++..+ .....+|--+  +
T Consensus       185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~  264 (353)
T PF00930_consen  185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL  264 (353)
T ss_dssp             EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred             CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence            355667776654233 2333332   234556666544322221111     1134443 555544 4444666544  4


Q ss_pred             EEcCCCeeeeeeecCceee-EEEECCCCCEEE-EEeCC----CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765          135 LDVRKFKPIHRRKFGYEVN-EIAWNMTGEMFF-LTTGN----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                      ++...............+. .+.++++++.+. .+..+    ..+...++........+......-..++|||++++++-
T Consensus       265 ~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  265 YDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             EcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            5555444332222334564 467788877655 44432    24444455512333444433333368999999998764


Q ss_pred             e
Q 026765          209 G  209 (233)
Q Consensus       209 ~  209 (233)
                      .
T Consensus       345 ~  345 (353)
T PF00930_consen  345 T  345 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.73  E-value=0.55  Score=42.82  Aligned_cols=144  Identities=13%  Similarity=0.192  Sum_probs=87.2

Q ss_pred             EEEEEECcCCCEE--EEEeCCCCEEEEecccCCCCceee-EEEecC------cCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           23 VHSVAWNCTGTKL--ASGSVDQTARVWHIEPHGHGKVKD-IELRGH------ADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        23 V~~~~~~~~~~~l--~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~h------~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      +..+..++|++..  +..+.+-.|..+|+.......... .-+..|      ..-..++.|+|.-....+....|+.|++
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            4444445676543  333445578889986433222111 111111      1235677898876666677888999998


Q ss_pred             EECCCCe-eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeeeee--ecCceeeEEEECCCCCEEEE
Q 026765           94 WDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRR--KFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        94 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~  166 (233)
                      ..+.... ....+.+.....+++|+|.|+.+++|-..|++..|.....  ..++..  ...+.+.++.|=..-.++++
T Consensus       183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            8765432 2233445556678999999999999999999998875432  111111  11356888888666555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.72  E-value=2.6  Score=32.73  Aligned_cols=100  Identities=16%  Similarity=0.283  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeE-EEEECCCCeeeeeeee-cCCe-e-EEEECCCCCeEEEEcCC-----CcEEEEEcCCC
Q 026765           70 DQLCWDPKHADLIATASGDKTV-RLWDARSGKCSQQAEL-SGEN-I-NITYKPDGTHIAVGNRD-----DELTILDVRKF  140 (233)
Q Consensus        70 ~~~~~~~~~~~~l~sg~~d~~i-~iwd~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~  140 (233)
                      ..++|+|..+.-++.+-.-|+. .++|....+....... ++.. + --.|+|||.+|...-.|     |.|-+||.+..
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            3577888877777778777765 5788877665443321 1111 1 14789999999876543     56899998632


Q ss_pred             -eeeeee-ecCceeeEEEECCCCCEEEEEeC
Q 026765          141 -KPIHRR-KFGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus       141 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                       +.+-.. .++...-.+.|.+||+.++.+.+
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence             222222 23445567888899999988765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.42  E-value=1.8  Score=36.41  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=51.7

Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecC---------Cceee---eEE-------ee-ecCceeEEEECCCC---CE
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---------SLRPL---DTV-------VA-HTAGCYCIAIDPMG---RY  205 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~---~~~-------~~-~~~~v~~i~~~p~~---~~  205 (233)
                      ..++..+..++.|..++..+.+|.+..+-.+         ++++.   +++       .. ..-.+..++|+|+.   .+
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            4567788888999999888888877665422         22211   111       00 01124467899986   68


Q ss_pred             EEEeeCCCcEEEEecCCcEE
Q 026765          206 FAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       206 las~s~dg~v~iwd~~~~~~  225 (233)
                      |..-+.|.++||||+.+...
T Consensus       183 L~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEEecCcEEEEEecCCcch
Confidence            88899999999999986543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.36  E-value=2.8  Score=34.62  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=57.6

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCc-EEEEEEcCCC--------------
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKH--------------   78 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~--------------   78 (233)
                      ..+......+.+++.+|.+.+.|....=|.|.++|+....    ....++|..++ +..+......              
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~----vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~  376 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI----VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS  376 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh----hhhhhccCccceEEEEEeecccccccccccccCCCC
Confidence            4566677889999999999999888888999999986421    11124454432 1111111110              


Q ss_pred             ---CCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 026765           79 ---ADLIATASGDKTVRLWDARSGKCSQQAEL  107 (233)
Q Consensus        79 ---~~~l~sg~~d~~i~iwd~~~~~~~~~~~~  107 (233)
                         .-+++-+-.-|.|.||.++.+..+..+..
T Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence               11345567788999999998876665543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.14  E-value=2  Score=39.47  Aligned_cols=126  Identities=14%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             EEeCCCeEEEEECCCCeeee---e---------eeecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCee-eeeeecC
Q 026765           84 TASGDKTVRLWDARSGKCSQ---Q---------AELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKP-IHRRKFG  149 (233)
Q Consensus        84 sg~~d~~i~iwd~~~~~~~~---~---------~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~  149 (233)
                      ..+.+-.|..||+++-....   .         ........++.|.|.-. ..+++..|+.|.+..+..... .......
T Consensus       119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t  198 (1405)
T KOG3630|consen  119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT  198 (1405)
T ss_pred             EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc
Confidence            33444578889986532111   0         01112234577777533 346677788888776543222 2223455


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee----ecCceeEEEECCCCCEEEEee
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~i~~~p~~~~las~s  210 (233)
                      ...++++|+|.|+.+++|-.+|++.-|... .+....+..    -...|.+|.|-....+++.-+
T Consensus       199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             cceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            678999999999999999999999887643 222222211    124688899877666666543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.12  E-value=4  Score=33.15  Aligned_cols=145  Identities=13%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             ccEEEEEECcCCCEEEEEe-----------CCC-CEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           21 KKVHSVAWNCTGTKLASGS-----------VDQ-TARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~-----------~D~-~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      ....+++|.++|.+.++-.           ..+ .|.+++-.. ..++... ..+.........+++.+++  +++ +..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcceeEEeecCCCCccceeEecCC--EEE-eCC
Confidence            4566889999999887753           122 565554221 1222111 1222223345778887764  554 444


Q ss_pred             CCeEEEEECCCC-----eeeee---eee-----cCCeeEEEECCCCCeEEEEcCC-------------------CcEEEE
Q 026765           88 DKTVRLWDARSG-----KCSQQ---AEL-----SGENINITYKPDGTHIAVGNRD-------------------DELTIL  135 (233)
Q Consensus        88 d~~i~iwd~~~~-----~~~~~---~~~-----~~~~~~~~~~~~~~~l~~~~~d-------------------~~i~i~  135 (233)
                      ....++.|....     +....   +..     +.....+.+.|||...++-+..                   +.+.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            444445454321     11111   111     1123358899998766644421                   223333


Q ss_pred             EcCCCeeeeeeecC-ceeeEEEECCCCCEEEEEeCC
Q 026765          136 DVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       136 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +....+ ......+ .....++|+++|+++++-..+
T Consensus       170 ~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       170 NPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence            433322 1112222 235678999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.98  E-value=6.6  Score=35.31  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeecCCe-------------eEEEECC--CCCeEEEEcC----------CCcEEE
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-------------INITYKP--DGTHIAVGNR----------DDELTI  134 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~----------d~~i~i  134 (233)
                      ..++.++.|+.+.-.|.++|+....+...+.+             ....-.|  .+..+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            35677888999999999998866543322111             0011111  1235555542          577999


Q ss_pred             EEcCCCeeeeeeecCce-------------------eeEEEECCCCCEEEEEeC------------------CCeEEEEe
Q 026765          135 LDVRKFKPIHRRKFGYE-------------------VNEIAWNMTGEMFFLTTG------------------NGTVEVLT  177 (233)
Q Consensus       135 ~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~------------------~~~v~~~~  177 (233)
                      +|.++++.+.......+                   ....++.+....+..+.+                  .+.+.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            99998887655432100                   012333444444444332                  23444455


Q ss_pred             cCCceeeeEEee--ec-------CceeEEEECC-CCC---EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          178 YPSLRPLDTVVA--HT-------AGCYCIAIDP-MGR---YFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       178 ~~~~~~~~~~~~--~~-------~~v~~i~~~p-~~~---~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .++++..-.+..  |+       ....-+.+.- +|+   .++.++.+|.+.+.|.++|+.+...++
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            556555433332  11       0111122322 553   788999999999999999998876544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.51  E-value=1.4  Score=32.96  Aligned_cols=66  Identities=9%  Similarity=0.040  Sum_probs=49.3

Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEE------e--------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV------V--------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~--------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +...++++++-+.+|.+++||+...+.+..-      .        .....|..+.++.+|.-+++-+ +|..+.||.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3457889999999999999999876543221      1        2445688889998888777665 57889999875


Q ss_pred             c
Q 026765          223 M  223 (233)
Q Consensus       223 ~  223 (233)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.45  E-value=1.8  Score=37.19  Aligned_cols=76  Identities=16%  Similarity=0.236  Sum_probs=42.3

Q ss_pred             cCCCEEEEEeCCCCEEEEecccCC-CC-ceeeEEEec--------------------CcCcEEEEEEcC---CCCCEEEE
Q 026765           30 CTGTKLASGSVDQTARVWHIEPHG-HG-KVKDIELRG--------------------HADSVDQLCWDP---KHADLIAT   84 (233)
Q Consensus        30 ~~~~~l~s~~~D~~v~vW~~~~~~-~~-~~~~~~~~~--------------------h~~~v~~~~~~~---~~~~~l~s   84 (233)
                      ++...++.+..||.+......... .+ ......+..                    -...+..++.++   ++..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466777888888888776654311 11 111111110                    112345555554   24578889


Q ss_pred             EeCCCeEEEEECCCCeeeeee
Q 026765           85 ASGDKTVRLWDARSGKCSQQA  105 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~  105 (233)
                      -+.|+.+|+||+.++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.07  E-value=5  Score=31.68  Aligned_cols=102  Identities=22%  Similarity=0.401  Sum_probs=57.7

Q ss_pred             CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC--CeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC-Cceeee
Q 026765          109 GENINITYKPDGTHIAVGNRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLD  185 (233)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  185 (233)
                      +....+..+++|++++++....-+.-||...  .++ +.......+..+.|.+++.+++++ ..|.++.=+.. ..+.-.
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            3455677789999999887777777888643  233 333345679999999998877765 77888776622 222111


Q ss_pred             E----EeeecCceeEEEECCCCCEEEEeeCC
Q 026765          186 T----VVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       186 ~----~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      .    +....-.+..++|.+++...|+|+..
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            1    11123347889999988888877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.02  E-value=1.7  Score=32.46  Aligned_cols=63  Identities=11%  Similarity=0.089  Sum_probs=43.3

Q ss_pred             ECCCCCeEEEEcCCCcEEEEEcCCCeeeeee---------------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765          116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRR---------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       116 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  179 (233)
                      +..+++++++.+.+|.+.+||+.+.+.+...               .....+..+..+.+|.-++. -.+|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEeccc
Confidence            4457889999999999999999876644322               12234666777777766554 345677777753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.99  E-value=0.12  Score=45.62  Aligned_cols=130  Identities=15%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             CCeEEEEECCCCeeee--eeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCC--Ceeeeee------ecCceeeEEE
Q 026765           88 DKTVRLWDARSGKCSQ--QAELSGENINITYKP-DGTHIAVGNRDDELTILDVRK--FKPIHRR------KFGYEVNEIA  156 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~------~~~~~~~~~~  156 (233)
                      .+-+++=+........  .-.+.+.+..+.|.. +...+.  -.=|.+.+||+..  ++....+      +.+..+.-+.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            3456665554332100  112345555566632 111111  1225678898753  2222111      2233445556


Q ss_pred             ECC---CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEE-----------EECCCCCEEEEeeCCCcEEEEec
Q 026765          157 WNM---TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI-----------AIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       157 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i-----------~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      |.|   +.-++..+..++.+++....+... .-+.+|..++..+           .+||||+.+|.++.||.++.|-+
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            654   446677788889999888754322 3345576655443           37999999999999999888764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.93  E-value=5.9  Score=32.20  Aligned_cols=61  Identities=20%  Similarity=0.300  Sum_probs=35.6

Q ss_pred             eeeEEEECCCCCEEEEEeCC-------------------CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          151 EVNEIAWNMTGEMFFLTTGN-------------------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      ....+.|.|+|.+.++-+..                   |.+..++.+..+. ..+.......+.++|+|+|+++++-..
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccC
Confidence            36688999999877654421                   3344444433322 222222233568999999988876443


Q ss_pred             C
Q 026765          212 D  212 (233)
Q Consensus       212 d  212 (233)
                      +
T Consensus       204 ~  204 (367)
T TIGR02604       204 D  204 (367)
T ss_pred             C
Confidence            3

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.88  E-value=3  Score=36.73  Aligned_cols=103  Identities=11%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCcEEEEEcCC-------C-------------eeeeeeecCceeeEEEEC--CCCCEEEEEeCCCeEEE
Q 026765          118 PDGTHIAVGNRDDELTILDVRK-------F-------------KPIHRRKFGYEVNEIAWN--MTGEMFFLTTGNGTVEV  175 (233)
Q Consensus       118 ~~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~  175 (233)
                      -+...|+++..||.+.+|.++.       .             ++......+....+++++  ...+++++++....|.+
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            3556788899999999997521       0             011122234456778887  77888888888888888


Q ss_pred             EecCCc--e-eeeEEeeecCceeEEEECCCC---C---EEEEeeCCCcEEEEec
Q 026765          176 LTYPSL--R-PLDTVVAHTAGCYCIAIDPMG---R---YFAVGSADSLVSLWDI  220 (233)
Q Consensus       176 ~~~~~~--~-~~~~~~~~~~~v~~i~~~p~~---~---~las~s~dg~v~iwd~  220 (233)
                      +-+...  + ....-..|..-|.+|+|-++.   .   ++++++-.|.+-+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            865431  1 111111255568899986644   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA03098 kelch-like protein; Provisional

Probab=91.87  E-value=4  Score=34.97  Aligned_cols=143  Identities=14%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             CCEEEEEeCCC------eEEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCC-----CcEEEEEcCCCeeeee
Q 026765           79 ADLIATASGDK------TVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHR  145 (233)
Q Consensus        79 ~~~l~sg~~d~------~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~  145 (233)
                      ..+++.||.++      .+..||..+.+....-....+  ...++ .-++..++.||.+     ..+..||..+.+....
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            35666776543      467788877665332111111  11122 2256666777765     2466788765443321


Q ss_pred             eecCcee-eEEEECCCCCEEEEEeCC------CeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCCC---
Q 026765          146 RKFGYEV-NEIAWNMTGEMFFLTTGN------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---  213 (233)
Q Consensus       146 ~~~~~~~-~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---  213 (233)
                      .....+. .......+++.++.|+.+      ..+..||..+.  .....+...... .++ ...++..++.|+.+.   
T Consensus       374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~  451 (534)
T PHA03098        374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYIDN  451 (534)
T ss_pred             CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccCCCC
Confidence            1111111 111112356666666531      35677776542  222111100011 111 223456667776432   


Q ss_pred             -----cEEEEecCCcE
Q 026765          214 -----LVSLWDISEML  224 (233)
Q Consensus       214 -----~v~iwd~~~~~  224 (233)
                           .+.+||..+.+
T Consensus       452 ~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        452 IKVYNIVESYNPVTNK  467 (534)
T ss_pred             CcccceEEEecCCCCc
Confidence                 37888877553

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.56  E-value=2  Score=36.17  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCC--------CCceeeEE--------EecCcCcEEEEEEcCCC--CCE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG--------HGKVKDIE--------LRGHADSVDQLCWDPKH--ADL   81 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~--------~~~~~~~~--------~~~h~~~v~~~~~~~~~--~~~   81 (233)
                      .-.|..+..++.|..++-+|.||.+.++=....+        ...+.+..        .+...-.+..++|+|+.  ...
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            4468889999999999999999998876422111        11111111        11111235677899975  334


Q ss_pred             EEEEeCCCeEEEEECCCCe
Q 026765           82 IATASGDKTVRLWDARSGK  100 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~  100 (233)
                      |..-..|..||+||+...+
T Consensus       183 L~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEEecCcEEEEEecCCcc
Confidence            4556789999999986543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.52  E-value=2.3  Score=30.42  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             CceeEEEECCCC------CEEEEeeCCCcEEEEecCC
Q 026765          192 AGCYCIAIDPMG------RYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       192 ~~v~~i~~~p~~------~~las~s~dg~v~iwd~~~  222 (233)
                      ..+..++|||.|      -+||+-..++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999966      2799999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.46  E-value=4.5  Score=29.98  Aligned_cols=103  Identities=15%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCcEEEEEcCC--CeeeeeeecCceeeEEEECCCCCEEEEEeCC---C---eEEEE-ecCCc----eeee-E
Q 026765          121 THIAVGNRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---G---TVEVL-TYPSL----RPLD-T  186 (233)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~v~~~-~~~~~----~~~~-~  186 (233)
                      ..|.++....+|.+|++..  .+.......-..+..+..+..|+++++--.+   .   .+++| +++..    .++. .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            4555556677899999873  3334444444578899999999999876432   2   55666 33211    2222 2


Q ss_pred             Eeee---------------------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          187 VVAH---------------------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       187 ~~~~---------------------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +.||                     ..++.+++..|-..-|+.|+ ++++.||.+....
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence            2232                     23567888887554555554 5678888876543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.10  E-value=10  Score=33.60  Aligned_cols=39  Identities=15%  Similarity=0.229  Sum_probs=30.8

Q ss_pred             CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+..+..||+.++||--...|.|.+-.++..++..+|.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            345678899999999999999999998887666555543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.01  E-value=3.6  Score=28.02  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=61.2

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCC--------eeeeeeeecCCeeEEE---ECC--CCCeEEEEcCCCcEEEEEcCC
Q 026765           73 CWDPKHADLIATASGDKTVRLWDARSG--------KCSQQAELSGENINIT---YKP--DGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~---~~~--~~~~l~~~~~d~~i~i~d~~~  139 (233)
                      .|....+ .|+.+..-+.|.|++....        ..+..+.....+.+++   +.|  +...|+.|+ ...+..||+..
T Consensus         5 kfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            3444333 4566667778888876432        1234444555555543   433  234555555 44689999987


Q ss_pred             CeeeeeeecCceeeEEEECC---CCCEEEEEeCCCeEEEEecCCceee
Q 026765          140 FKPIHRRKFGYEVNEIAWNM---TGEMFFLTTGNGTVEVLTYPSLRPL  184 (233)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~  184 (233)
                      ...+.-......++++.+..   ....++..+++..+.-+|.+-.+.+
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            65554444445566665532   2334566666667777665544433

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.00  E-value=1.2  Score=22.71  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=18.9

Q ss_pred             ecCceeEEEECCCCCEEEEee-CC--CcEEEE
Q 026765          190 HTAGCYCIAIDPMGRYFAVGS-AD--SLVSLW  218 (233)
Q Consensus       190 ~~~~v~~i~~~p~~~~las~s-~d--g~v~iw  218 (233)
                      ....-...+|+|||++|+-.+ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334456789999999877554 45  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=90.95  E-value=7.6  Score=32.88  Aligned_cols=62  Identities=5%  Similarity=-0.118  Sum_probs=32.1

Q ss_pred             CCEEEEEeCCC---eEEEEECCCCeeeeeeeecCCee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765           79 ADLIATASGDK---TVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPI  143 (233)
Q Consensus        79 ~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  143 (233)
                      +++.+.||.++   .+..||.++.+.........+.. ..+..-+++..+.|+   ...+||.++.+..
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~  428 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWT  428 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEe
Confidence            45667777653   46678887766543222111111 111123455555553   4677888765443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.50  E-value=1.5  Score=22.68  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             CCCCeEEEEc-CCCcEEEEEcCCCeeeeeeecCceeeEEE
Q 026765          118 PDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIA  156 (233)
Q Consensus       118 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  156 (233)
                      |+++++.++. .++.+.++|..+.+.+.....+.....+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            5667666544 56889999998777766665544343433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.49  E-value=0.033  Score=45.69  Aligned_cols=134  Identities=19%  Similarity=0.277  Sum_probs=85.4

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      ....|-|.+.-|+.++.+-.|+.||-..  + ...  +. ..+.....++|+.++..+++-+-..+.+.+||+.+.. .+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~ag--q-~~l--e~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tq  110 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAG--Q-VIL--EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQ  110 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhc--c-eec--cc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HH
Confidence            3456778887799999999999998432  1 111  11 2344566788888777777778888999999997543 22


Q ss_pred             eeeecCCee--EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCCEE
Q 026765          104 QAELSGENI--NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus       104 ~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  164 (233)
                      +++..+...  -+.|++....++.+...+.+.+++.+..+.+... ++...+.+.+|.+.+..+
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            222222111  1567888888888888888999987654443222 233455666666655433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.18  E-value=7  Score=33.03  Aligned_cols=118  Identities=20%  Similarity=0.222  Sum_probs=63.4

Q ss_pred             eeeeCccccEEEEEECcCCC-------EEEEEeCCCCEEEEecccCCCCceeeEEEecCc--CcEEEEEEcCCCCCEEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGT-------KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--DSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~-------~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s   84 (233)
                      .++.-|...  -+.|+|..+       .-+.|-+|..|---|+...+ .++...+.+...  ....+...  ..+.+++.
T Consensus       504 eeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-NKi~v~esKdY~tKn~Fss~~t--TesGyIa~  578 (776)
T COG5167         504 EEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-NKIKVVESKDYKTKNKFSSGMT--TESGYIAA  578 (776)
T ss_pred             eEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC-Cceeeeeehhcccccccccccc--ccCceEEE
Confidence            345555444  678888643       33456567766444443322 233333333221  12222222  22457899


Q ss_pred             EeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765           85 ASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDV  137 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (233)
                      |+..|.|++||--..+....+. +...+.-+....+|+++++.+.. .+.+.|+
T Consensus       579 as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         579 ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            9999999999954332211111 23344557778899988766644 4666665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.03  E-value=9.3  Score=31.17  Aligned_cols=147  Identities=13%  Similarity=0.170  Sum_probs=71.9

Q ss_pred             EEcCCCCCEEEEEeCCCeE--EEEECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC
Q 026765           73 CWDPKHADLIATASGDKTV--RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG  149 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~~i--~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  149 (233)
                      +|.+++.++|+++..|+.-  .+-|+.+++..+.....+. .....++|+++.++-......+.-.|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            6777887888888777754  4557888776554443322 224566788887765555567888898876543333322


Q ss_pred             ce-eeEEEE--CCCCCEEEEEeC-----------------------CCeEEEEecCCceeeeEEeeecCceeEEEECCCC
Q 026765          150 YE-VNEIAW--NMTGEMFFLTTG-----------------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG  203 (233)
Q Consensus       150 ~~-~~~~~~--~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~  203 (233)
                      .. .....|  +.++..++ +..                       ...+..+++.+++.. .+..-...+..+.|+|..
T Consensus       122 ~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETTE
T ss_pred             cccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCcccCCCC
Confidence            11 111222  33444432 211                       123444455555432 222234566788999988


Q ss_pred             CEEEEeeCCC----c-EEEEecC
Q 026765          204 RYFAVGSADS----L-VSLWDIS  221 (233)
Q Consensus       204 ~~las~s~dg----~-v~iwd~~  221 (233)
                      ..+++=+..|    . -|||-++
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             CCEEEEeccCCcceeceEEEEEE
Confidence            7777665444    2 4788775

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.93  E-value=14  Score=33.07  Aligned_cols=80  Identities=20%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCC--------CCceeeEEE--------ecCcCcEEEEEEcCCC--CCEE
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG--------HGKVKDIEL--------RGHADSVDQLCWDPKH--ADLI   82 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~--------~~~~~~~~~--------~~h~~~v~~~~~~~~~--~~~l   82 (233)
                      -.|..|..||.|++||-.|..+.+.+.=....+        ...+.+..+        ..+...|..+.|+|.+  ...|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            468999999999999999886655553221100        011111111        2344578999999974  3455


Q ss_pred             EEEeCCCeEEEEECCCCe
Q 026765           83 ATASGDKTVRLWDARSGK  100 (233)
Q Consensus        83 ~sg~~d~~i~iwd~~~~~  100 (233)
                      +.=..|+++|+||+...+
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            667889999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=89.93  E-value=15  Score=33.56  Aligned_cols=149  Identities=6%  Similarity=0.054  Sum_probs=86.6

Q ss_pred             EEEEEEcCCCCCEEEEEeC----------CCeEEEEECCC-Ce--eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEE
Q 026765           69 VDQLCWDPKHADLIATASG----------DKTVRLWDARS-GK--CSQQAELSGENINITYKPDGTHIAVGNRDDELTIL  135 (233)
Q Consensus        69 v~~~~~~~~~~~~l~sg~~----------d~~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~  135 (233)
                      +.++.|..+...+++.|..          .|.|.++.... ++  ........+.+.++.. -+|+++|  +-...+++|
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLy  853 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLY  853 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEE
Confidence            4445576554455555532          46777776655 22  2233334444444332 2566665  345679999


Q ss_pred             EcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee-EEe--eecCceeEEEECCCCCEEEEeeC
Q 026765          136 DVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVV--AHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       136 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      +....+.++. .....++..+...-.++.+++|.--+.+.+..++..+-.. .+.  .+..+.+++.+= ++..++.+-.
T Consensus       854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil-~~d~ylgae~  932 (1096)
T KOG1897|consen  854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-DDDTYLGAEN  932 (1096)
T ss_pred             EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe-cCceEEeecc
Confidence            9876643322 2233466777777789999999988888888776544211 111  245556666654 3455556667


Q ss_pred             CCcEEEEecC
Q 026765          212 DSLVSLWDIS  221 (233)
Q Consensus       212 dg~v~iwd~~  221 (233)
                      +|.+.+-..+
T Consensus       933 ~gNlf~v~~d  942 (1096)
T KOG1897|consen  933 SGNLFTVRKD  942 (1096)
T ss_pred             cccEEEEEec
Confidence            7777666554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.76  E-value=4.8  Score=27.45  Aligned_cols=114  Identities=10%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             EEEEECcCCCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcC----CCCCEEEEEeCCCeEEEEEC
Q 026765           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDP----KHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~----~~~~~l~sg~~d~~i~iwd~   96 (233)
                      ..-.|+.....|+.+..-++|.|.+.......   .-..+.+-.-...|++++-.+    ++...|+.|+ ...+..||+
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            44567777778888888999999986532210   001112223445677775433    2345666654 567999999


Q ss_pred             CCCeeeeeeeecCCeeEEEE---CCCCCeEEEEcCCCcEEEEEcC
Q 026765           97 RSGKCSQQAELSGENINITY---KPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      ....-....+.+..+.++.+   .....-++..+.+-.|.-||..
T Consensus        81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence            87654444344444444433   2222233333434455556544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.52  E-value=4.8  Score=33.45  Aligned_cols=85  Identities=13%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus         9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      .+..+..-....++|.++.|++|.+.||.--.|++|...+..+.........+.+..+..|....|..+ ..+ +--. +
T Consensus        55 dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~-A~i~-~  131 (657)
T KOG2377|consen   55 DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEI-AFIT-D  131 (657)
T ss_pred             CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeE-EEEe-c
Confidence            344444445678899999999999999999999999999874422211111122233456888888754 333 2222 3


Q ss_pred             CeEEEEEC
Q 026765           89 KTVRLWDA   96 (233)
Q Consensus        89 ~~i~iwd~   96 (233)
                      .-+-+|-.
T Consensus       132 ~G~e~y~v  139 (657)
T KOG2377|consen  132 QGIEFYQV  139 (657)
T ss_pred             CCeEEEEE
Confidence            33566654

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=89.14  E-value=1.4  Score=20.77  Aligned_cols=26  Identities=15%  Similarity=0.289  Sum_probs=21.0

Q ss_pred             CceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          192 AGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +.|.+++.++  .+++.+..-+.+|||.
T Consensus         2 E~i~aia~g~--~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGD--SWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence            4577888876  4999999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.96  E-value=17  Score=32.90  Aligned_cols=110  Identities=12%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee---------eEEEEC----------------CCCCEEEEEeCCCeEE
Q 026765          120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV---------NEIAWN----------------MTGEMFFLTTGNGTVE  174 (233)
Q Consensus       120 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~----------------~~~~~~~~~~~~~~v~  174 (233)
                      +..+..++.++.+.-+|.++++.+.........         ..+.+.                ..++.++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            345666666777777777776665554432211         111111                1345788888999999


Q ss_pred             EEecCCceeeeEEeeecCce-------------eEEEECC--CCCEEEEeeC----------CCcEEEEecCCcEEEEee
Q 026765          175 VLTYPSLRPLDTVVAHTAGC-------------YCIAIDP--MGRYFAVGSA----------DSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v-------------~~i~~~p--~~~~las~s~----------dg~v~iwd~~~~~~i~~~  229 (233)
                      -+|.++++..-.+... ..|             ..+.-.|  .+..++.|+.          +|.|+-+|+++|+.+=+|
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999998887654321 111             0111112  1235555542          688999999999987665


Q ss_pred             e
Q 026765          230 T  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.93  E-value=3.8  Score=30.38  Aligned_cols=49  Identities=16%  Similarity=0.205  Sum_probs=35.8

Q ss_pred             CEEEEEeCCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          162 EMFFLTTGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      +.+.++.+.+.|.+|++.  ..++...|..- +.|..+.++..|+||+|-=.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence            455555778889999987  33444455433 67889999999999998543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.42  E-value=10  Score=29.57  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             EEECCCCCe-EEEEcCCCc-EEEEEcCCCeeeeee---ecCceeeEEEECCCCCEEEEEeC-----CCeEEEEecCC-ce
Q 026765          114 ITYKPDGTH-IAVGNRDDE-LTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYPS-LR  182 (233)
Q Consensus       114 ~~~~~~~~~-l~~~~~d~~-i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~  182 (233)
                      +.++|.... ++.+-.=|+ ..++|....+.....   +..+--..=.|+++|.++.+.-.     .|.|-+||.+. .+
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq  152 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ  152 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence            455554333 222222233 456776544332221   11122334468999999887644     37899999863 34


Q ss_pred             eeeEEeeecCceeEEEECCCCCEEEEee
Q 026765          183 PLDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       183 ~~~~~~~~~~~v~~i~~~p~~~~las~s  210 (233)
                      .+..+..|.-....+.+.+||+.|+.+.
T Consensus       153 rvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         153 RVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             eecccccCCcCcceeEEecCCcEEEEeC
Confidence            5666778888888999999999988764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.67  E-value=9.6  Score=28.32  Aligned_cols=106  Identities=12%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             CCEEEEEeCC--CeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeeeecCceeeE
Q 026765           79 ADLIATASGD--KTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNE  154 (233)
Q Consensus        79 ~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  154 (233)
                      ++++.+.+.-  ..|++||+.+++......... ....--...-+.++. ..=.++....+|.++.+.+.......+-  
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG--  133 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG--  133 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc--
Confidence            4666666553  468999999888665544331 111100111122332 2334566677887776665544433332  


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEecCCceeeeE
Q 026765          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT  186 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  186 (233)
                      .....+++.++.+.+..+++.-|.++...+.+
T Consensus       134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~  165 (262)
T COG3823         134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDT  165 (262)
T ss_pred             eeeecCCcceEeeCCceEEEecCHHHhhhcce
Confidence            33345777788888888888777665544443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.57  E-value=17  Score=30.19  Aligned_cols=121  Identities=14%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCeEEEEECCCCeeeeeeeecCC---eeEEEEC--CCCCeEEEEc-CCCcEEEE-EcCCCee----eeeeec--------
Q 026765           88 DKTVRLWDARSGKCSQQAELSGE---NINITYK--PDGTHIAVGN-RDDELTIL-DVRKFKP----IHRRKF--------  148 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~--~~~~~l~~~~-~d~~i~i~-d~~~~~~----~~~~~~--------  148 (233)
                      -.++.+||+.+.+..+.+.+...   +..+.|.  |+..+=++++ ...+|..| .....+.    +..+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            36899999999999888887643   3456664  5555544333 33444433 3232221    111110        


Q ss_pred             ----------CceeeEEEECCCCCEEEEEe-CCCeEEEEecCCc---eeeeEEeee----------------cCceeEEE
Q 026765          149 ----------GYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSL---RPLDTVVAH----------------TAGCYCIA  198 (233)
Q Consensus       149 ----------~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~~~~~~~~----------------~~~v~~i~  198 (233)
                                ..-++.+..+.|++++.+.+ ..|.++.||..+.   +...++...                .+...-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                      12257888999999998886 5899999998642   222222110                11235678


Q ss_pred             ECCCCCEEEE
Q 026765          199 IDPMGRYFAV  208 (233)
Q Consensus       199 ~~p~~~~las  208 (233)
                      .|.||+.|..
T Consensus       381 lS~DGkRlYv  390 (461)
T PF05694_consen  381 LSLDGKRLYV  390 (461)
T ss_dssp             E-TTSSEEEE
T ss_pred             EccCCeEEEE
Confidence            8889987643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.43  E-value=15  Score=29.37  Aligned_cols=103  Identities=16%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeeee-----cCceeeEEEECCC----CCEEEEEeCC--------
Q 026765          110 ENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRK-----FGYEVNEIAWNMT----GEMFFLTTGN--------  170 (233)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~--------  170 (233)
                      .+..++|.|+++.+++ ...|.|.+++.....  .+....     .......++++|+    +.+.+..+..        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3567999999877665 458999999832221  122221     1234678889884    3344443421        


Q ss_pred             CeEEEEecCCc-------eeee-EEee---ecCceeEEEECCCCCEEEEeeCCC
Q 026765          171 GTVEVLTYPSL-------RPLD-TVVA---HTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       171 ~~v~~~~~~~~-------~~~~-~~~~---~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      ..+.-|.....       +.+. .+..   .......++|.|+|.++++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            23333333222       1111 1111   122345799999997666555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.41  E-value=18  Score=30.06  Aligned_cols=31  Identities=23%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ..|.+++..+..+.|.+.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999999989999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.98  E-value=4.4  Score=33.66  Aligned_cols=154  Identities=17%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-Ce--e-----EEEECCCCCeEEEEcCCCcEEEE-EcC
Q 026765           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-EN--I-----NITYKPDGTHIAVGNRDDELTIL-DVR  138 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~--~-----~~~~~~~~~~l~~~~~d~~i~i~-d~~  138 (233)
                      .|..+-..|++. .++.-+. .++.++++.+.........+. +.  .     .+.....|.-+.++..||.+.-| |.+
T Consensus       222 ~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr  299 (733)
T COG4590         222 DVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR  299 (733)
T ss_pred             chHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence            455566778764 4433332 678888887654322111111 11  0     11122345667888889887665 554


Q ss_pred             CCe-e----eeeeec-CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765          139 KFK-P----IHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       139 ~~~-~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      ... +    +...+. +.++..+.-..+-+-+++-..+|++..+.....+.+.. ..--..+.-+++||.+.+|++- +.
T Consensus       300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-~~  377 (733)
T COG4590         300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-DQ  377 (733)
T ss_pred             cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee-cC
Confidence            321 1    111121 12333343334455677778888888876543333222 2122345678999999998854 45


Q ss_pred             CcEEEEecCCcEE
Q 026765          213 SLVSLWDISEMLC  225 (233)
Q Consensus       213 g~v~iwd~~~~~~  225 (233)
                      |+++++.++...+
T Consensus       378 gki~~~~l~Nr~P  390 (733)
T COG4590         378 GKIRLAQLENRNP  390 (733)
T ss_pred             CceEEEEecCCCC
Confidence            7799998876543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.81  E-value=15  Score=28.75  Aligned_cols=188  Identities=16%  Similarity=0.258  Sum_probs=104.2

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      ..|-++.|.++.|+|+.+.|++......-.||=- ..+ ..+..+.+.+-.++ -.+++... +.+.++-=.+..+.++-
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~G-dlirtiPL~g~~Dp-E~Ieyig~-n~fvi~dER~~~l~~~~  156 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEG-DLIRTIPLTGFSDP-ETIEYIGG-NQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEe-cCC-ceEEEecccccCCh-hHeEEecC-CEEEEEehhcceEEEEE
Confidence            3455667999999999999988877777667632 211 12333344443222 22344433 34445555566666665


Q ss_pred             CCCCeeee-----eeeecC------CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-ee--eeee--------cCceee
Q 026765           96 ARSGKCSQ-----QAELSG------ENINITYKPDGTHIAVGNRDDELTILDVRKFK-PI--HRRK--------FGYEVN  153 (233)
Q Consensus        96 ~~~~~~~~-----~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~--~~~~--------~~~~~~  153 (233)
                      +.......     .+.+..      ....++|+|..+.+...-+..-+.||...... ..  +...        .-..+.
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            54432111     111111      12358999999999888888777777654221 11  0000        012355


Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEecCCceeeeEEeeec---------CceeEEEECCCCCEEEE
Q 026765          154 EIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT---------AGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       154 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~las  208 (233)
                      ++.+++ .+.+++.+.+++.+.-.+.. ++++..+.-+.         ...-.|+..++|...++
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            666764 46677778888888777754 44443333221         12235777777765443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.50  E-value=20  Score=29.98  Aligned_cols=113  Identities=14%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee----eeecC-ceeeEEEECCCCCEEEEEeCCCeEEEEecC-Cc
Q 026765          108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH----RRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SL  181 (233)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~  181 (233)
                      .+++.++.|++|.+.+|+-..+..+.+++....++..    ..+.+ ..+....|+.+ .-++.....| +.+|... ..
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            3567789999999999999999999998864333221    12222 23777888765 3344433333 4555443 23


Q ss_pred             eeeeEEeeecCceeEEEECCCCCEE--EEeeCCCcEEEEecCC
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGRYF--AVGSADSLVSLWDISE  222 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~~l--as~s~dg~v~iwd~~~  222 (233)
                      +.++....|...|+--.|.|+.+.+  +++-..++..=+-+++
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            4455556678888888898887753  3332444444444443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.35  E-value=19  Score=32.09  Aligned_cols=155  Identities=9%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce----eeEEEe--------------cCcCcEEEEEEcC-CCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIELR--------------GHADSVDQLCWDP-KHAD   80 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~----~~~~~~--------------~h~~~v~~~~~~~-~~~~   80 (233)
                      ++..+++.   +.++++.|. .+.|.||++..-.....    ......              ...-.|+.+...- .+..
T Consensus        40 KNNLtals---q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~E  115 (717)
T PF08728_consen   40 KNNLTALS---QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEE  115 (717)
T ss_pred             ccceeEEe---cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCee
Confidence            34444444   267777765 79999999753221100    000000              0111233333211 2346


Q ss_pred             EEEEEeCCCeEEEEECCC-------C----e---------eeeeeeecCCeeEEEEC--CCCCeEEEEcCCCcEEEEEcC
Q 026765           81 LIATASGDKTVRLWDARS-------G----K---------CSQQAELSGENINITYK--PDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      +|+.+..||.|.+|.+..       .    .         +-..+......+.++++  ...+.||+++....|.+|-..
T Consensus       116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~  195 (717)
T PF08728_consen  116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA  195 (717)
T ss_pred             EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence            788999999999996521       0    0         11122234455678887  778888999888888887543


Q ss_pred             C--Ceeee--eeecCceeeEEEECCCC-----C-EEEEEeCCCeEEEEec
Q 026765          139 K--FKPIH--RRKFGYEVNEIAWNMTG-----E-MFFLTTGNGTVEVLTY  178 (233)
Q Consensus       139 ~--~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~v~~~~~  178 (233)
                      .  .+...  .....+.|.+++|-++.     . .+++.+-.|.+.+|++
T Consensus       196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            3  11111  22345567788774432     2 5667778899888876

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=84.66  E-value=22  Score=29.63  Aligned_cols=190  Identities=15%  Similarity=0.133  Sum_probs=85.4

Q ss_pred             CCCEEEEEe-CCCCEEEEecccCCCC-ceee-EEE---e---cCcCcEEEEEEcCCCCCEEEEEeC------CCeEEEEE
Q 026765           31 TGTKLASGS-VDQTARVWHIEPHGHG-KVKD-IEL---R---GHADSVDQLCWDPKHADLIATASG------DKTVRLWD   95 (233)
Q Consensus        31 ~~~~l~s~~-~D~~v~vW~~~~~~~~-~~~~-~~~---~---~h~~~v~~~~~~~~~~~~l~sg~~------d~~i~iwd   95 (233)
                      +.++|+..+ ....|.|.|+.+.... ++.. ++-   .   +-..+-+.-+ -|+ +.+++|+-.      .|-+.+.|
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc-lp~-G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC-LPD-GRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS---EEEEEEEETTS-S--EEEEE-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee-cCC-ccEEEEeccCCCCCCCCcEEEEc
Confidence            356776666 6788999988643221 2211 110   0   1111212222 233 456666632      25567777


Q ss_pred             CCCCeeeeeeeecC----CeeEEEECCCCCeEEEEcC--------------------CCcEEEEEcCCCeeeeeeecC--
Q 026765           96 ARSGKCSQQAELSG----ENINITYKPDGTHIAVGNR--------------------DDELTILDVRKFKPIHRRKFG--  149 (233)
Q Consensus        96 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~--  149 (233)
                      -++-.....++...    ..+.+.+.|..+.+++...                    ..++.+||+.+.+.++.+..+  
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            76655555444322    2345777887777777654                    347999999999988887765  


Q ss_pred             -ceeeEEEE--CCCCCEEEEEeC-CCeEEEEec-CCce----eeeEEee-----------------ecCceeEEEECCCC
Q 026765          150 -YEVNEIAW--NMTGEMFFLTTG-NGTVEVLTY-PSLR----PLDTVVA-----------------HTAGCYCIAIDPMG  203 (233)
Q Consensus       150 -~~~~~~~~--~~~~~~~~~~~~-~~~v~~~~~-~~~~----~~~~~~~-----------------~~~~v~~i~~~p~~  203 (233)
                       .-...+.|  .|+..+=.+++. ..+|..|-- +.++    .+..+..                 -..-|+.|.+|.|+
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence             23445555  444444333332 333433322 2221    1111111                 12346889999999


Q ss_pred             CEEEEee-CCCcEEEEecCC
Q 026765          204 RYFAVGS-ADSLVSLWDISE  222 (233)
Q Consensus       204 ~~las~s-~dg~v~iwd~~~  222 (233)
                      ++|.... -+|.|+-||+.+
T Consensus       324 rfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SS
T ss_pred             CEEEEEcccCCcEEEEecCC
Confidence            9987655 689999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=84.58  E-value=33  Score=31.60  Aligned_cols=155  Identities=13%  Similarity=0.118  Sum_probs=82.3

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC--CCC---EEEEEeCCCeEEEEE
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HAD---LIATASGDKTVRLWD   95 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~---~l~sg~~d~~i~iwd   95 (233)
                      +.++..+-+.+..+++.++.++.+..-++....   +....-......|.|+.++|.  +++   +++.|.++..+.+--
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~  564 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT  564 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence            334444444445566666666655555554322   111111123457889999875  445   889999988776543


Q ss_pred             C-CCCeeeeeeeecCC-----eeEEEECCCCCeEEEEcCCCcEEEEEc--CCCeeeeee--ecC-ceeeEEEECCCCCEE
Q 026765           96 A-RSGKCSQQAELSGE-----NINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRR--KFG-YEVNEIAWNMTGEMF  164 (233)
Q Consensus        96 ~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~  164 (233)
                      . .............+     +.-..+-.|..+|.++..||.+..|.+  .++......  ..+ .++.--.|+..++..
T Consensus       565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~  644 (1096)
T KOG1897|consen  565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTA  644 (1096)
T ss_pred             ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceE
Confidence            3 23222222222222     222445556889999999999876654  333322222  122 233333455555555


Q ss_pred             EEEeCCCeEEEEec
Q 026765          165 FLTTGNGTVEVLTY  178 (233)
Q Consensus       165 ~~~~~~~~v~~~~~  178 (233)
                      +.+..|.-..+|..
T Consensus       645 vfa~sdrP~viY~~  658 (1096)
T KOG1897|consen  645 VFALSDRPTVIYSS  658 (1096)
T ss_pred             EEEeCCCCEEEEec
Confidence            66666655555554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.46  E-value=3.1  Score=36.78  Aligned_cols=69  Identities=13%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      ....++++.-+|.+.-++++..||++++++..+..+++++....     +-..+.|..   +-|+++..|..+.-|.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~-----p~~nlv~tn---hgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK-----PKENLVFTN---HGLVTATSDRRALAWK   81 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC-----Cccceeeec---cceEEEeccchhheee
Confidence            45668889989999999999999999999988766655543221     122233321   1245666666666664

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.31  E-value=13  Score=26.61  Aligned_cols=31  Identities=19%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             cEEEEEEcCCC-----CCEEEEEeCCCeEEEEECCC
Q 026765           68 SVDQLCWDPKH-----ADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        68 ~v~~~~~~~~~-----~~~l~sg~~d~~i~iwd~~~   98 (233)
                      .+..++|+|.|     +=+|+.-..++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68889999854     22567778888999987653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=83.66  E-value=20  Score=28.36  Aligned_cols=152  Identities=15%  Similarity=0.232  Sum_probs=69.7

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc-CC
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDV-RK  139 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~  139 (233)
                      ...-...+..+.-.+++ .+++.++.-..+.-||-........ ......+.++.|.|++...+++ ..+.+..=+. ..
T Consensus       140 ~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  140 VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred             ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence            34445677888877765 5665555444556787544322222 2234456679999998766644 7788887762 11


Q ss_pred             Ceeeee----e-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc---eeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          140 FKPIHR----R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       140 ~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      .+.-..    . .....+..++|.++++.+++++ +|.+.. ..+.+   +.......-....+.|.|.+..+-++.| .
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~  294 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q  294 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence            111111    1 1234578889998876666554 443322 22222   2222111123345678887655556555 6


Q ss_pred             CCcEEEE
Q 026765          212 DSLVSLW  218 (233)
Q Consensus       212 dg~v~iw  218 (233)
                      +|.+--|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            7766544

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.16  E-value=18  Score=27.55  Aligned_cols=139  Identities=15%  Similarity=0.203  Sum_probs=75.1

Q ss_pred             EEEEECCCCeeeeeeeecCCeeE--EEECCCCCeEEEEcCC---CcEEEEEcCC----Ceeeee---eecCceeeEEEEC
Q 026765           91 VRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRD---DELTILDVRK----FKPIHR---RKFGYEVNEIAWN  158 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d---~~i~i~d~~~----~~~~~~---~~~~~~~~~~~~~  158 (233)
                      -.+||+.+++.. .+.......|  -.+.+||+.+.+|+..   ..+++++...    ......   ...+.=-....-=
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            357998887542 2333333343  3577999999988753   3477777543    111110   0000000112223


Q ss_pred             CCCCEEEEEeCCC-eEEEEecCC--ceeee-EEeeec---Cc---eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          159 MTGEMFFLTTGNG-TVEVLTYPS--LRPLD-TVVAHT---AG---CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       159 ~~~~~~~~~~~~~-~v~~~~~~~--~~~~~-~~~~~~---~~---v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      +||+.+++|+... +..+|....  ..... .+....   ..   =.-+-..|+|+.++.+..+  -.|||....+.+++
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT  204 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence            6899888887764 344444311  11111 111110   11   1145678999999888765  56679888888888


Q ss_pred             eecC
Q 026765          229 FTKL  232 (233)
Q Consensus       229 ~~~~  232 (233)
                      |+.+
T Consensus       205 lP~l  208 (243)
T PF07250_consen  205 LPDL  208 (243)
T ss_pred             CCCC
Confidence            7754

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00564 PQQ beta-propeller repeat

Probab=83.08  E-value=3.6  Score=19.88  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=20.6

Q ss_pred             EEEEeeCCCcEEEEecCCcEEEEee
Q 026765          205 YFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       205 ~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .+..++.+|.+..+|.++|+.+-++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999876554

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.03  E-value=41  Score=31.53  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=25.7

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEec
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHI   49 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~   49 (233)
                      ...-..++|+|....+|-|..+|.|+++-.
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~   64 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQ   64 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecc
Confidence            345668899999999999999999999864

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=82.92  E-value=24  Score=28.76  Aligned_cols=51  Identities=12%  Similarity=0.138  Sum_probs=25.4

Q ss_pred             CCEEEEEeCCC-----------eEEEEECCCCeeeeeeee-cCCee-EEEEC-CCCCeEEEEcCC
Q 026765           79 ADLIATASGDK-----------TVRLWDARSGKCSQQAEL-SGENI-NITYK-PDGTHIAVGNRD  129 (233)
Q Consensus        79 ~~~l~sg~~d~-----------~i~iwd~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~l~~~~~d  129 (233)
                      ..+.+.|+.+.           .+..||..+.+....... ..... ..+.. .+++..+.|+.+
T Consensus        85 ~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            45666776542           466788877655442211 11111 11122 456666777753

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.68  E-value=18  Score=27.00  Aligned_cols=102  Identities=16%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             CCCEEEEEeC--CCCEEEEecccCCCCceeeEEEec---CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 026765           31 TGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (233)
Q Consensus        31 ~~~~l~s~~~--D~~v~vW~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~  105 (233)
                      +|.++.|.+.  ...|++||+....  .+....+..   ....++.+     +..+..-.-.+|...++|.++-++...+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq--~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQ--EIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCce--EEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccc
Confidence            4567777764  4568899986421  111111210   00112111     1222233345677778888877777777


Q ss_pred             eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765          106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (233)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (233)
                      ...++.+.++.  |+..++.+.....+..-|.++..
T Consensus       128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             ccCCcceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence            77777766653  45556655555566666665543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.49  E-value=23  Score=28.32  Aligned_cols=51  Identities=10%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             CCEEEEEeCC-----------CeEEEEECCCCeeeeeee-ecCCeeE-EEE-CCCCCeEEEEcCC
Q 026765           79 ADLIATASGD-----------KTVRLWDARSGKCSQQAE-LSGENIN-ITY-KPDGTHIAVGNRD  129 (233)
Q Consensus        79 ~~~l~sg~~d-----------~~i~iwd~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~l~~~~~d  129 (233)
                      .++.+.|+.+           ..+..||..+.+...... ....... .+. .-+++..+.|+.+
T Consensus        64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            4566777653           246678887766543221 1111111 111 2466677777754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.34  E-value=4.9  Score=20.38  Aligned_cols=29  Identities=10%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             cCcEEEEEEcCCCCCEEEEEeCC--CeEEEE
Q 026765           66 ADSVDQLCWDPKHADLIATASGD--KTVRLW   94 (233)
Q Consensus        66 ~~~v~~~~~~~~~~~~l~sg~~d--~~i~iw   94 (233)
                      ...-....|+|++..+++++..+  |...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34566778999988888888777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=81.51  E-value=1.4  Score=39.52  Aligned_cols=41  Identities=15%  Similarity=0.192  Sum_probs=22.0

Q ss_pred             CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcC
Q 026765           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP   76 (233)
Q Consensus        31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   76 (233)
                      ..-++.-+-.+++|++-..++...     ..+.+|...+..++|..
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~  234 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFA  234 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHh
Confidence            345556666677777755443211     12345766666665543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.04  E-value=52  Score=31.37  Aligned_cols=155  Identities=22%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eecCCeeEEE--------ECCCCCeEEEEcCCCcEEEE
Q 026765           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINIT--------YKPDGTHIAVGNRDDELTIL  135 (233)
Q Consensus        65 h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~l~~~~~d~~i~i~  135 (233)
                      |...-..+-+.|.=++..  .+-|+.+.+|+..++...... ..+..+..|.        |-|.=+++++-+---.+.++
T Consensus        77 ~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il  154 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL  154 (1311)
T ss_pred             CcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence            444444555555434433  457889999999885432222 2222233322        22332333333222233333


Q ss_pred             Ec----CCCeee-----eeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecC--Cc---e-----------------e
Q 026765          136 DV----RKFKPI-----HRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP--SL---R-----------------P  183 (233)
Q Consensus       136 d~----~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---~-----------------~  183 (233)
                      -+    .+....     .... .+..++++....+|+.+++|-.+ .+.-.-+.  ++   +                 .
T Consensus       155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs  233 (1311)
T KOG1900|consen  155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS  233 (1311)
T ss_pred             EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence            22    111110     1111 25568888877777766665444 44322221  10   0                 0


Q ss_pred             eeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          184 LDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       184 ~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +..+. .+.++|..++.+.....|.+=++.|+|.+||+..
T Consensus       234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            12222 4567899999998888999999999999999976

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.91  E-value=24  Score=31.66  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD  136 (233)
Q Consensus        66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d  136 (233)
                      ...++++.-+|.++ -+++|..||.|++|+....+.........+..++.|...|  +++...|....-|.
T Consensus        14 ~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence            34567778788654 5679999999999998766554444444555566665443  44455555555554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=80.90  E-value=22  Score=27.00  Aligned_cols=79  Identities=16%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             eeEEEECCCCCEEEEE-eCCCeEEEEec--CCc-----eeeeEEee---ecC-ceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          152 VNEIAWNMTGEMFFLT-TGNGTVEVLTY--PSL-----RPLDTVVA---HTA-GCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~-----~~~~~~~~---~~~-~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      .+.++|+.+.+.+... +-+-.+.-||+  +++     +.+..+..   ... ..-.++++..|.+.++.-+.++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            3678898887776655 45667777774  332     22322222   111 112345566888888888899999999


Q ss_pred             cCCcEEEEeee
Q 026765          220 ISEMLCVRTFT  230 (233)
Q Consensus       220 ~~~~~~i~~~~  230 (233)
                      ..+|+.+++|.
T Consensus       240 p~tGK~L~eik  250 (310)
T KOG4499|consen  240 PTTGKILLEIK  250 (310)
T ss_pred             CCCCcEEEEEE
Confidence            99999998874

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=80.54  E-value=27  Score=27.71  Aligned_cols=101  Identities=13%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             CCEEEEEeCC-----CeEEEEECCCCeee----eeeeecCC--eeEEEECCCCCeEEEEcC-----CCcEEEEEcCCCee
Q 026765           79 ADLIATASGD-----KTVRLWDARSGKCS----QQAELSGE--NINITYKPDGTHIAVGNR-----DDELTILDVRKFKP  142 (233)
Q Consensus        79 ~~~l~sg~~d-----~~i~iwd~~~~~~~----~~~~~~~~--~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~  142 (233)
                      ..+++.|+.+     ..+..+|+.+.+..    ..-.....  ...++. -+++..+.|+.     ...+..||+.+.+.
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            3566677754     34666777665531    11111111  112222 24555566664     23577888876543


Q ss_pred             eeeeecC--ceeeEEEECCCCCEEEEEeCCC----eEEEEecCC
Q 026765          143 IHRRKFG--YEVNEIAWNMTGEMFFLTTGNG----TVEVLTYPS  180 (233)
Q Consensus       143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~  180 (233)
                      .......  ..........+++.++.|+.++    .+..||..+
T Consensus       152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence            3221111  1111222234567777776543    245677654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=80.18  E-value=12  Score=23.40  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=24.2

Q ss_pred             CceeEEEECCCCCEEEEee-CCCcEEEEecCC
Q 026765          192 AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISE  222 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~  222 (233)
                      ...+.|.++|++++|..++ ..+.|.+|...+
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            4457899999999876555 578899998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-16
2h9l_A	329	Wdr5delta23 Length = 329		8e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-15
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-15
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-12
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-10
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		7e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		6e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		9e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		4e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-05
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		4e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		5e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		5e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		3e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		7e-04

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 22/237 (9%)
Query: 5   SIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           S P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   +
Sbjct: 5   STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TI 60
Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPD 119
            GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P 
Sbjct: 61  SGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQ 117
Query: 120 GTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
              I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 175 VLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 32  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 87
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 88  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 144
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 85
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 86  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 142
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 25  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 80
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 81  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 137
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W        K  
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 64  ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           G   +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T 230
           T
Sbjct: 234 T 234

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W        K  
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 64  ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           G   +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T 230
           T
Sbjct: 234 T 234

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 13  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 68
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 69  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 125
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 64  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 9   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 64
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 65  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 121
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 4   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 59
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 60  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   +   
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 64  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 22/241 (9%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LA+ S D+  ++W       GK +
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY---DGKFE 61
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 62  KT-ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           G   +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T 230
           T
Sbjct: 234 T 234

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++  +T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 67  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+     K  P H       V+ + +N  G +   ++ +G   + 
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++  +T  GH K V SV ++  G  LAS S D+  ++W        K     + G
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT----ISG 66
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 67  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+     K  P H       V+ + +N  G +   ++ +G   + 
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H +  TGH   V  VA++  G  +AS S D+T ++W+     +G++    L GH+ SV  
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRG 390
Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNR 128
           + + P     IA+AS DKTV+LW+ R+G+  Q   L+G + +   + + PD   IA  + 
Sbjct: 391 VAFSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASAS- 445
Query: 129 DDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
           DD+   L  R  + +         V  +A++  G+     + + TV++      + L T+
Sbjct: 446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL 504
Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
             H++    +A  P G+  A  S D  V LW+ +  L ++T T
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLT 546

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 27/235 (11%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +GH+  V  V ++   + + S S D T +VW  E     +     L+GH DSV  + +D 
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFD- 159
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTIL 135
               L+A+ S D T++LWD +  +C +       N+ +++  P+G HI   +RD  + + 
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 136 DVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
           +V+    +       E V  +  N  G +    + + TV V    +      +  H    
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 195 YCIAIDPMGRYFAV--------------------GSADSLVSLWDISEMLCVRTF 229
            CI+  P   Y ++                    GS D  + +WD+S  +C+ T 
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           +NL++         + SV ++  G  LA+G+ D+  R+W IE   + K+  I L+GH   
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE---NRKIVMI-LQGHEQD 167
Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGN 127
           +  L + P   D + + SGD+TVR+WD R+G+CS    +      +   P DG +IA G+
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 128 RDDELTILD 136
            D  + + D
Sbjct: 227 LDRAVRVWD 235

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 22/225 (9%)
Query: 15  EYTGHKKKVHSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRG 64
           + TGH+  V S+A  C     T TK+ S S D+T   W   P  H       + D  L G
Sbjct: 8   QLTGHRGWVTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGT 121
           H+  V  +     + +   +AS D ++RLW+ ++G+C  Q +  G     +++ + PD  
Sbjct: 66  HSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQC--QYKFLGHTKDVLSVAFSPDNR 122
Query: 122 HIAVGNRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTVEVLT 177
            I  G RD+ L + +V+      + R      V+ + ++ + +   + +G  +  V+V  
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
             + R +  +  HT     + + P G   A    D +  LWD+++
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 16/225 (7%)
Query: 13  SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVD 70
           SR  TGHK    S  +     T+L +GS DQT  +W +       +   E   GH   V 
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 71  QLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGNR 128
            L  +  +A++  + S D TVRLWD R  S          G+  ++ + PDG     G+ 
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 129 DDELTILDVRKFK--PIHRRKFGYEVNE------IAWNMTGEMFFLTTGNGTVEV---LT 177
           D    + D+R      ++ R+     NE      +A++++G + F    NG   V   L 
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 178 YPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
              +  L T+  +H     C+ +   G     GS D  + +W  S
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 259
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
                              G+  N++                   +  YP++  +  +  
Sbjct: 260 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 282
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
           HT+    + + P G   A  +AD  + LW   E+
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
                   V  ++WN     + L++G+ +  +  +    +   + T+  H+     +   
Sbjct: 104 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTK 231
           P GR+ A G  D+LV++W  +      + ++TFT+
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 95  QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 149
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 207
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 266
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 267 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 339
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
                              G+  N++                   +  YP++  +  +  
Sbjct: 340 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 362
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
           HT+    + + P G   A  +AD  + LW   E+
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
                   V  ++WN     + L++G+ +  +  +    +   + T+  H+     +   
Sbjct: 184 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTK 231
           P GR+ A G  D+LV++W  +      + ++TFT+
Sbjct: 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 41/218 (18%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 350
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
                              G+  N++                   +  YP++  +  +  
Sbjct: 351 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 373
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227
           HT+    + + P G   A  +AD  + LW   E+   R
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
                   V  ++WN     + L++G+ +  +  +    +   + T+  H+     +   
Sbjct: 195 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTK 231
           P GR+ A G  D+LV++W  +      + ++TFT+
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K  +      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLW 218
            +    AG Y  A +P          G+    G  D+++ +W
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +R + GH K V SVA++    ++ SGS D+T ++W+        V+D     H++ V  +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 177
Query: 73  CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
            + P  ++ I  + G DK V++W+  + K  +     +G    +T  PDG+  A G +D 
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD----- 185
           +  + D+ + K ++    G  +N +    +   ++L    G       PS++  D     
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALC--FSPNRYWLCAATG-------PSIKIWDLEGKI 288
Query: 186 ------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                       +  A    C  +A    G+    G  D+LV +W ++
Sbjct: 289 IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +R + GH K V SVA++    ++ SGS D+T ++W+        V+D     H++ V  +
Sbjct: 98  TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 154
Query: 73  CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
            + P  ++ I  + G DK V++W+  + K  +     +G    +T  PDG+  A G +D 
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD----- 185
           +  + D+ + K ++    G  +N +    +   ++L    G       PS++  D     
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALC--FSPNRYWLCAATG-------PSIKIWDLEGKI 265
Query: 186 ------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                       +  A    C  +A    G+    G  D+LV +W ++
Sbjct: 266 IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 32  GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
            TK  S  V   D T      EP G  +  D+ LRGH      L W+P     + +AS D
Sbjct: 147 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 205
Query: 89  KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
            T+ LWD                IN T K             E  ++D +     H    
Sbjct: 206 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 235
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
              V ++AW++  E  F +  +    ++       + +P  TV AHTA   C++ +P   
Sbjct: 236 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 205 Y-FAVGSADSLVSLWDISEM 223
           +  A GSAD  V+LWD+  +
Sbjct: 293 FILATGSADKTVALWDLRNL 312

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 32  GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
            TK  S  V   D T      EP G  +  D+ LRGH      L W+P     + +AS D
Sbjct: 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 89  KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
            T+ LWD                IN T K             E  ++D +     H    
Sbjct: 204 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 233
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
              V ++AW++  E  F +  +    ++       + +P  TV AHTA   C++ +P   
Sbjct: 234 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 205 Y-FAVGSADSLVSLWDISEM 223
           +  A GSAD  V+LWD+  +
Sbjct: 291 FILATGSADKTVALWDLRNL 310

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 32  GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
            TK  S  V   D T      EP G  +  D+ LRGH      L W+P     + +AS D
Sbjct: 149 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 207
Query: 89  KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
            T+ LWD                IN T K             E  ++D +     H    
Sbjct: 208 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 237
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
              V ++AW++  E  F +  +    ++       + +P  TV AHTA   C++ +P   
Sbjct: 238 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 205 Y-FAVGSADSLVSLWDISEM 223
           +  A GSAD  V+LWD+  +
Sbjct: 295 FILATGSADKTVALWDLRNL 314

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 13/217 (5%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQ--LCW 74
           GH+  V SV  + T    AS S+D   R+W +E   +GK +K I+    A  VD   L +
Sbjct: 78  GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE---NGKQIKSID----AGPVDAWTLAF 130
Query: 75  DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
            P  +  +AT +    V ++   SGK     +  G+ I +I Y PDG ++A G  D  + 
Sbjct: 131 SPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 134 ILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           I D+   K +H  +     +  + ++   ++    + +G +++          T+  H +
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
               +A  P   +F   S+D  V +WD+    CV TF
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 19/203 (9%)
Query: 35  LASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
           L SGS D+T  +W +   E +G+  +    L GH   V  L    ++   I++ S DKT+
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTL 100
Query: 92  RLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIHRRK 147
           RLWD R+G   ++      E  ++ + PD   I     + E+ + ++    KF    +  
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 148 FGYEVNEIAWNMTGEM---------FFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
               V+ + ++   +          +F + G +G ++V    + +   T  AH +    +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219
Query: 198 AIDPMGRYFAVGSADSLVSLWDI 220
           +I P G+Y A G  D  + +WDI
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDI 242

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Query: 26  VAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPKHADLIAT 84
           +AWN  GT LAS   D+  R+W  E  G   + K +   GH  +V ++ W P   + +A+
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS 78
Query: 85  ASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
           AS D T  +W            L G   E  ++ + P G  +A  +RD  + + +V +  
Sbjct: 79  ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 142 PIH----RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS--LRPLDTVVAHTAGCY 195
                        +V  + W+ + E+    + + TV++            T+  H +  +
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 196 CIAIDPMGRYFAVGSADSLVSLW 218
            +A DP G+  A  S D  V +W
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18  GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
           GH+K+ + ++WN   +  L S S D T  +W I      GK+ D +    GH+  V+ + 
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
           W   H  L  + + D+ + +WD RS   S+ + L    + E   +++ P    I A G+ 
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
           D  + + D+R  K  +H       E+ ++ W+   E    ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+   +  + +AS D TV LWD  +G                   
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL-- 176
                       E  I+D +     H       V ++AW++  E  F +  +    ++  
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLMIWD 258
Query: 177 --TYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTF 229
             +  + +P   V AHTA   C++ +P   +  A GSAD  V+LWD+  + L + TF
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18  GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
           GH+K+ + ++WN   +  L S S D T  +W I      GK+ D +    GH+  V+ + 
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
           W   H  L  + + D+ + +WD RS   S+ + L    + E   +++ P    I A G+ 
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
           D  + + D+R  K  +H       E+ ++ W+   E    ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 39/177 (22%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+   +  + +AS D TV LWD  +G                   
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV----E 174
                       E  I+D +     H       V ++AW++  E  F +  +       +
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLXIWD 258
Query: 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTF 229
             +  + +P   V AHTA   C++ +P   +  A GSAD  V+LWD+  + L + TF
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            KNL       H   V+   ++  G ++AS   D+T +V+  E    G+ K ++++ H D
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET---GE-KLLDIKAHED 658
Query: 68  SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
            V  LC      D  IAT S DK V++WD+ +GK     +   E +N    T K +   +
Sbjct: 659 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
           A G+ D  L + D+ + K      FG+   VN   ++   E+    + +GT+ +
Sbjct: 717 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 44   ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
              +W+I+     ++K  + RGH   V  + + P  +  + TAS D+T+R+W+ +   C  
Sbjct: 864  VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 917
Query: 104  QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGY--EVNEIAWNM 159
             A +  + I++ ++ + T +        L + ++R  + I  +  +  Y  E       +
Sbjct: 918  SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969
Query: 160  TGEMFFLTTGN--GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
            +  + ++  G+  G ++++  P+ R   + V H      I     G+     S DS++ +
Sbjct: 970  SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Query: 218  WD 219
            W+
Sbjct: 1030 WN 1031

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            KNL       H   V+   ++  G ++AS   D+T +V+  E       K ++++ H D
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 665
Query: 68  SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
            V  LC      D  IAT S DK V++WD+ +GK     +   E +N    T K +   +
Sbjct: 666 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
           A G+ D  L + D+ + K      FG+   VN   ++   E+    + +GT+ +
Sbjct: 724 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 44   ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
              +W+I+     ++K  + RGH   V  + + P  +  + TAS D+T+R+W+ +   C  
Sbjct: 871  VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 924
Query: 104  QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGY--EVNEIAWNM 159
             A +  + I++ ++ + T +        L + ++R  + I  +  +  Y  E       +
Sbjct: 925  SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 976
Query: 160  TGEMFFLTTGN--GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
            +  + ++  G+  G ++++  P+ R   + V H      I     G+     S DS++ +
Sbjct: 977  SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1036
Query: 218  WD 219
            W+
Sbjct: 1037 WN 1038

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 16/224 (7%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            + +H R  T   K V+ + ++    K+ SG  D T ++W        ++    L GH  
Sbjct: 123 LQRIHCRSETS--KGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTG 174
Query: 68  SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN 127
           SV  L +D +   +I T S D TVR+WD  +G+         E + +  + +   +   +
Sbjct: 175 SVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-LHLRFNNGMMVTCS 230
Query: 128 RDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
           +D  + + D+     I  R+   G+       +   +     +G+ T++V    +   + 
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 186 TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           T+  H  G  C+      R    GS+D+ + LWDI    C+R  
Sbjct: 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 332

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 23/247 (9%)
Query: 5   SIPFKNLHSRE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
           ++P  +L   E YT H  +      + +G   ASG V    R+W      H  +    + 
Sbjct: 43  TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--ILKTTIP 100
Query: 64  GHADSVDQLCWDPKHADLIATASGDKT---VRLWDARSGKCSQQAELSGENINITYKPDG 120
             +  V  + WD +   + A   G +    V L+D  +   +   +    N ++ +KP  
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSR 159
Query: 121 T-HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNGTVEVL 176
              I  G+ D+ + I +   FK   +  FG     V+ + +N  G +F  T G+GT+ + 
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 177 -----TYPSLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
                T   +   D++  VAH+   + +   P G   A  SAD  + +W+++ +   +T 
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 230 ---TKLE 233
              T++E
Sbjct: 278 PVGTRIE 284

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSV 69
           + +R + GH K V SVA++    ++ S S D+T ++W+    G  K    E   GH D V
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT--LGECKYTISEGGEGHRDWV 520
Query: 70  DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV 125
             + + P      I +AS DKTV++W+  +  C  ++ L+G       +   PDG+  A 
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 126 GNRDDELTILDVRKFKPIH 144
           G +D  + + D+ + K ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLY 597

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 40/209 (19%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R  TGH   V  V  +  G    SGS D   R+W +       V      GH   V  + 
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTRRFVGHTKDVLSVA 479
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
           +   +  ++ +AS D+T++LW+   G+C       GE               G+RD    
Sbjct: 480 FSLDNRQIV-SASRDRTIKLWNTL-GECKYTISEGGE---------------GHRD---- 518
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            +   +F P               N         + + TV+V    + +   T+  HT  
Sbjct: 519 WVSCVRFSP---------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISE 222
              +A+ P G   A G  D +V LWD++E
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAE 592

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   V +    C G ++ SGS D T +VW       GK     L GH   V    W  +
Sbjct: 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVT---GKCLRT-LVGHTGGV----WSSQ 166
Query: 78  HAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
             D +I + S D+T+++W+A +G+C          +   +  +   +  G+RD  L + D
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWD 225
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC 196
           +   + +H    G+          G        +  V+V    +   L T+  HT   Y 
Sbjct: 226 IETGQCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284
Query: 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           +  D  G +   GS D+ + +WD+    C+ T T
Sbjct: 285 LQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLT 316

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
           E +C +TFT  E
Sbjct: 215 EGMCRQTFTGHE 226

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
           E +C +TFT  E
Sbjct: 215 EGMCRQTFTGHE 226

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           T H+  +H    +  GT+LA+ S D++ +++ +   G   + D  LRGH   V Q+ W  
Sbjct: 10  TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD--LRGHEGPVWQVAWAH 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPD--GTHIAVGNRDD 130
           P + +++A+ S D+ V +W   +G   +  E +G + ++    + P   G  +A G+ D 
Sbjct: 68  PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
            +++L        +  +  +EV +I  N    +       G   V   P++ P  +++ H
Sbjct: 128 AISLL-------TYTGEGQWEVKKI--NNAHTI-------GCNAVSWAPAVVP-GSLIDH 170
Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
            +G     I    + FA G  D+L+ LW   E    +   KLE
Sbjct: 171 PSGQKPNYI----KRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 47  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 222 EMLCVRTFTKLE 233
           E +C +TFT  E
Sbjct: 226 EGMCRQTFTGHE 237

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
           E +C +TFT  E
Sbjct: 215 EGMCRQTFTGHE 226

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
           E +C +TFT  E
Sbjct: 215 EGMCRQTFTGHE 226

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD----ARSGKCSQQAELSGENINI 114
           D+ LRGH      L W+P  +  + +AS D T+ LWD     + GK              
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVV------------ 217
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
               D   I  G+      +++   +  +H   FG   ++        M + T  N T  
Sbjct: 218 ----DAKTIFTGHT----AVVEDVSWHLLHESLFGSVADD-----QKLMIWDTRSNNTS- 263
Query: 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTF 229
                  +P  +V AHTA   C++ +P   +  A GSAD  V+LWD+  + L + +F
Sbjct: 264 -------KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH  +V  +AW   G +LASG  D   ++W         +       H  +V  + W P 
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 78  HADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV--GNRDDELT 133
            ++L+AT  G  DK +  W+A +G      +   +  ++ + P    I    G  D+ L+
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 134 I 134
           I
Sbjct: 331 I 331

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 18  GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLC 73
           GH   V  +AW       +ASGS D T  VW I   G     +   I L GH   V  + 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRDD 130
           W P   +++ +A  D  + +WD  +G    +   ++  + I ++ +  DG  I    RD 
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 131 ELTILDVRK 139
            + +++ RK
Sbjct: 199 RVRVIEPRK 207

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 18  GHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQL 72
           GH   V  +AW C      +ASGS D T  VW I   G     +   I L GH   V  +
Sbjct: 79  GHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRD 129
            W P   +++ +A  D  + +WD  +G    +   ++  + I ++ +  DG  I    RD
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 130 DELTILDVRK 139
             + +++ RK
Sbjct: 198 KRVRVIEPRK 207

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 62  LRGHADSVDQLCWD-PKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPD 119
           L+GH + V  LC D  K    I ++S D  V +WD+ +        +     +   Y P 
Sbjct: 60  LKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 120 GTHIAVGNRDDELTI----LDVRKFKPIHRRKFGYEVNEI-AWNMTG-EMFFLT-TGNGT 172
           G  IA G  D++ ++     D  +     ++      N + A + T  +M  LT +G+GT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTF 229
             +    S + L +   H A   C+ + P   G  F  G  D    +WD+    CV+ F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQL 72
           T HKK + SVAW    + LA+GS D T  +W  E     +  +++L     GH + V  +
Sbjct: 55  TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGV 113
Query: 73  CWDPKHADLIATASGDKTVRLWDA-RSGK----CSQQAELSGENINITYKPDGTHIAVGN 127
            W       +AT S DK+V +W+   SG+     S   E S +  ++ + P    +A  +
Sbjct: 114 AW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 128 RDDELTI 134
            DD + I
Sbjct: 173 YDDTVRI 179

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 6   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
           P++  +IA+AS DKTV+LW+        Q E SG   N
Sbjct: 66  PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 99

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------------SGKCSQQAELS- 108
           L+GH   +  + W P++  ++ATAS D  V+LWD R            +GK SQ  E + 
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 109 ----GENINITYKPDGTHIAVGNRDDELTILD--------VRKFKPIHRRKFGYEVNEIA 156
               G+   + +  DG H+     D+ + + +        V   K  +  K G +   ++
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VS 300
Query: 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216
              + E  F+  G+ T+ V T  S   +  +  H     C       +    GS D  + 
Sbjct: 301 CGCSSEFVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 217 LW 218
            W
Sbjct: 360 AW 361

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
           P++  +IA+AS DKTV+LW+        Q E SG   N
Sbjct: 68  PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
           P++  +IA+AS DKTV+LW+        Q E SG   N
Sbjct: 68  PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   +  + +N T   L S S D T R+WH    G+G  ++    GH+ S+    W   
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNC-FYGHSQSIVSASW--V 298
Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILD 136
             D + + S D +VRLW  +       + + G  I       DG   AV   D ++ + D
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 137 VRKFKPIHRRKFG 149
           ++K     R  +G
Sbjct: 359 LKKLNSKSRSLYG 371

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 37/239 (15%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELRGHAD---SVDQL 72
           TGH++ +  V +N  G  L S S D +A VW+ +     G      L GH     S+D  
Sbjct: 29  TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----LDGHTGTIWSIDVD 83
Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKC---------SQQAELS--GENI-----NITY 116
           C+         T S D +++LWD  +G+C          ++ E S  G        N+  
Sbjct: 84  CF----TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK 139
Query: 117 KPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIA-WNMTGEMFFLTTGNGTV 173
            P   +I    RD     L     +PIH+     G +   +A W+  G+  ++  G+   
Sbjct: 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK--YIIAGHKDG 197
Query: 174 EVLTYP---SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           ++  Y    +   +D++  H      +   P   YF   S D+   L D+S +  ++ +
Sbjct: 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
            L I +   +K       G E +  IA + TG   ++ +G +    VL+  +  P     
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
                   +++DP+G+    G  ++  S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
            L I +   +K       G E +  IA + TG   ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
            L I +   +K       G E +  IA + TG   ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H  +    L GH   V ++ W  P
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--TLTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
           +++++ ++     PI        VN  +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
            L I +   +K       G E +  IA + TG   ++ +G +    VL+  +  P     
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
                   +++DP+G+    G  ++  S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 32  GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
           G  L +GS     R W ++  G    K  ++  H   V  +CW    + +  TAS DKT 
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVF-TASCDKTA 110
Query: 92  RLWDARSGKCSQ--QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143
           ++WD  S +  Q  Q +   + I+    P+ + +  G+ D  L   D R   P+
Sbjct: 111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 66
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 67  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
           +++++ ++     PI        VN  +W
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASW 155

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G ++A+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
           +++++ ++     PI        VN  +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
           +++++ ++     PI        VN  +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 309 GARLLTTDQKSE-IRVYSASQWDC 331

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 10/182 (5%)
Query: 41  DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVRLWDARSG 99
           D    VW +    H +    + +GH D     C D  +    + T   D TVR WD R G
Sbjct: 162 DGNIAVWDL----HNQTLVRQFQGHTDGAS--CIDISNDGTKLWTGGLDNTVRSWDLREG 215
Query: 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159
           +  QQ + + +  ++ Y P G  +AVG     + +L V K            V  + +  
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275
Query: 160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC-IAIDPMGRYFAVGSADSLVSLW 218
            G+ F  T  +  +     P    +      ++   C I++D   +Y   GS D   +++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD--DKYIVTGSGDKKATVY 333
Query: 219 DI 220
           ++
Sbjct: 334 EV 335

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 33/178 (18%)
Query: 60  IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
           ++L GH   V  L +   H  ++ + S D+TVR+WD + G C+   E  G N     ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
               +  +I  G+RD+ L +  + K    P H  +  Y +                    
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
             V   P   P    V          +   G     GS D+ + +WD+++M C+   +
Sbjct: 252 --VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G + A+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
           +++++ ++     PI        VN  +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.08
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.95
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.89
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.87
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.77
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.68
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.64
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.59
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.44
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.44
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.42
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.4
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.38
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.34
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.34
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.23
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.2
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.17
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.14
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.1
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.09
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.07
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.06
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.05
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.05
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.95
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.93
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.92
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.54
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.11
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.81
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.74
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.63
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.55
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.53
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.16
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.12
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.65
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.37
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.8
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.57
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.47
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.42
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.42
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.22
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.91
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.38
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.05
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.79
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.87
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.28
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.17
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.02
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.85
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.85
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.86
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.83
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	85.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	84.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.3

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-38  Score=248.76  Aligned_cols=219  Identities=18%  Similarity=0.256  Sum_probs=187.6

Q ss_pred             cceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           12 HSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ...++.+|.+.|++++|+|++ ++|+||+.|++|++|++...... ......+.+|...|.+++|+|++ .+|++|+.|+
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~   87 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDK   87 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCC
Confidence            346789999999999999975 89999999999999998643221 12234678999999999999975 6889999999


Q ss_pred             eEEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCC------CC
Q 026765           90 TVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT------GE  162 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------~~  162 (233)
                      +|++||+.++++...+.. ...+.+++|+|++.++++++.|+.+++||++.........+...+..+.+.|.      +.
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CC
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence            999999999988776654 35677899999999999999999999999975443333345567889999885      44


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+++++.|+.+++||.++.+....+.+|...|.+++|+|++++|++|+.||.|+|||+.++++++++..
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            899999999999999999998888999999999999999999999999999999999999999888764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=248.55  Aligned_cols=217  Identities=20%  Similarity=0.329  Sum_probs=187.5

Q ss_pred             ceeeeCccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           13 SREYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      .+.+.+|.+.|++++|+|+    +.+|+||+.|++|+||++....  ......+.+|...|.+++|+|++ .++++|+.|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D  101 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLD  101 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSS-SEEEEEETT
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCC-CEEEEEeCC
Confidence            3566799999999999985    5789999999999999986421  12334678999999999999975 588999999


Q ss_pred             CeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEE
Q 026765           89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  166 (233)
                      +.|++||+.++++...+... ....+++|+|+++++++++.++.+.+||+++.+...... ....+.+++|+|+++++++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            99999999999877766543 445679999999999999999999999998877665543 3456899999999999999


Q ss_pred             EeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++.|+.+++||.++++.+..+.+|...|.+++|+|++++|++|+.|+.|+|||+..+.++.++.++
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  247 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH  247 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999998887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-38  Score=255.91  Aligned_cols=215  Identities=25%  Similarity=0.414  Sum_probs=191.2

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|.++|++++|+|++++|+||+.|++|+|||+....    ....+.+|...|.+++|+|++ .+|++|+.|++|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~----~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~  175 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSG-KLLASCSADMTIK  175 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEE
Confidence            45788999999999999999999999999999999987533    223578999999999999975 6889999999999


Q ss_pred             EEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +||+.++++...+.. ...+.+++|+|+++++++++.|+.+++||+++...+.... +...+..+.++++++++++++.|
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D  255 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  255 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence            999998887766554 3567789999999999999999999999999887766544 45568999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCC--------------------CCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM--------------------GRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--------------------~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+++||..+.+....+.+|...|.+++|+|+                    +.+|++|+.|+.|++||+.++.++++|.
T Consensus       256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence            99999999999888889999999999999996                    6789999999999999999999999987


Q ss_pred             cC
Q 026765          231 KL  232 (233)
Q Consensus       231 ~~  232 (233)
                      ++
T Consensus       336 ~h  337 (410)
T 1vyh_C          336 GH  337 (410)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5e-38  Score=244.93  Aligned_cols=216  Identities=18%  Similarity=0.256  Sum_probs=185.1

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+.+.+|..+|++++|+|++++|++|+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|++|
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v  121 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTV  121 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCE
T ss_pred             eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc----EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeE
Confidence            346788999999999999999999999999999999986532    334678999999999999985 578999999999


Q ss_pred             EEEECCCCe-eeeeeee-cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEECC--CCCEE
Q 026765           92 RLWDARSGK-CSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNM--TGEMF  164 (233)
Q Consensus        92 ~iwd~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~  164 (233)
                      ++||++++. ....+.. ...+.+++|+| ++..+++|+.|+.|++||++.........  ....+..+.|.+  +++++
T Consensus       122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (304)
T 2ynn_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (304)
T ss_dssp             EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred             EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence            999998774 3333333 35577899999 67899999999999999998766554433  234678888876  67899


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++++.|+.+++||.++.+.+..+.+|...|.+++|+|++++|++|+.||+|+|||+.++++++++...
T Consensus       202 ~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             EEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=247.89  Aligned_cols=214  Identities=22%  Similarity=0.354  Sum_probs=190.6

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.+|...|++++|++++.+++||+.|++|++||+....    ....+..|...+.+++|+|++ .+|++|+.|+.|++
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~----~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK----QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNI  148 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEE
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC----EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEE
Confidence            3578999999999999999999999999999999986421    233567788899999999985 67889999999999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      ||+++++....+... ..+.+++|+|++++|++++.|+.|++||+++.+.+.... +..++.+++|+|+++++++++.|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence            999988876665544 456789999999999999999999999999988776654 456799999999999999999999


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .+++||.+..+....+.+|...|.+++|+|++++|++|+.|++|+|||+.+++++++|.++
T Consensus       229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h  289 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH  289 (321)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence            9999999998888999999999999999999999999999999999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.9e-38  Score=244.96  Aligned_cols=216  Identities=16%  Similarity=0.214  Sum_probs=184.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..++|.+|.+.|++++|+|++++|+||+.|++|++||+...    .....+.+|..+|.+++|+|++ ++|++|+.|+.|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i   79 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRI   79 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEE
Confidence            45689999999999999999999999999999999998642    1334677899999999999975 688999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee-ee-ecCceeeEEEECC-CCCEEEEE
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RR-KFGYEVNEIAWNM-TGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~  167 (233)
                      ++||+.++++...+..+ ..+.+++|+|++.++++|+.|+.|++||+++..... .. .+...+.+++|+| ++..++++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            99999999887766644 557789999999999999999999999998763332 22 2456799999999 67899999


Q ss_pred             eCCCeEEEEecCCceeeeEEe-eecCceeEEEECC--CCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          168 TGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p--~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.|+.+++||.....+...+. .|...+..++|+|  ++++|++|+.|++|+|||++++++++++.++
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h  227 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence            999999999998776665554 4667899999987  6789999999999999999999999998865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=251.44  Aligned_cols=204  Identities=18%  Similarity=0.242  Sum_probs=172.7

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+.+|.+.|++|+|+|+|++|+||+.|++|++||+...    .....+.+|...|.+++|+|++..+|++|+.|++|++|
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence            35689999999999999999999999999999998642    23346789999999999999988889999999999999


Q ss_pred             ECCCCeeeeeeeec---CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC-CEEEEEe
Q 026765           95 DARSGKCSQQAELS---GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG-EMFFLTT  168 (233)
Q Consensus        95 d~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~  168 (233)
                      |++++++...+...   ..+.+++|+|+ ++++++|+.|+.|++||+++.+.+..+. +...+.+++|+|++ +++++++
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence            99998876655332   34567999985 5678899999999999999888776654 45679999999998 5788999


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~  223 (233)
                      .|+++++||..+++.+ .+.+|...|++++|+|+++ +|++||.|++|++|++.+.
T Consensus       278 ~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          278 EDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             TTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            9999999999887754 5689999999999999986 5789999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-38  Score=255.22  Aligned_cols=216  Identities=22%  Similarity=0.366  Sum_probs=190.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+++.+|.+.|++++|+|++++|+||+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i  216 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTI  216 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC----EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeE
Confidence            346788999999999999999999999999999999986422    233567999999999999975 678999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCC---------
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMT---------  160 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~---------  160 (233)
                      ++||++++.+...+..+ ..+..+.++|++.++++++.|+.+++||+++.+..... .+...+.+++|+|+         
T Consensus       217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence            99999999887776544 44667899999999999999999999999887766544 34567999999986         


Q ss_pred             -----------CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          161 -----------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       161 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                                 ++++++++.|+.+++||..+++++..+.+|...|.+++|+|++++|++|+.||.|+|||+.++++++++
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence                       678999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ecC
Q 026765          230 TKL  232 (233)
Q Consensus       230 ~~~  232 (233)
                      ..+
T Consensus       377 ~~h  379 (410)
T 1vyh_C          377 NAH  379 (410)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.7e-38  Score=247.89  Aligned_cols=208  Identities=18%  Similarity=0.251  Sum_probs=176.0

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .|...|++++|+|+ ..|++|+.||+|+|||++...........+.+|.+.|.+++|+|++ ++|++|+.|++|++||++
T Consensus        80 ~~~~~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           80 QTEAGVADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EESSCEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             ccCCCEEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECC
Confidence            46788999999998 4788999999999999976443333444567999999999999975 688999999999999999


Q ss_pred             CCeeeeeeee-cCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCC-CCEEEEEeCCC
Q 026765           98 SGKCSQQAEL-SGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMT-GEMFFLTTGNG  171 (233)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~  171 (233)
                      ++++...+.. ...+.+++|+|++. .+++++.|+.|++||+++.+......   ....+.+++|+|+ ++++++++.|+
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            9988877764 45677899999885 67899999999999999887766543   2346889999985 56788899999


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEEE
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      .+++||.++++++..+.+|...|++++|+|++ ++||+|+.|++|+|||+..+++++
T Consensus       238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999999999999999999999999999998 579999999999999999988764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-37  Score=245.19  Aligned_cols=212  Identities=23%  Similarity=0.359  Sum_probs=178.0

Q ss_pred             CCCccceeeeCccccEEEEEE-----Cc-CCCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCC
Q 026765            8 FKNLHSREYTGHKKKVHSVAW-----NC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKH   78 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~-----~~-~~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~   78 (233)
                      +......++.+|.+.|++++|     ++ ++++|+||+.|++|++|++......   ......+.+|...|.+++|+|++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            444456789999999999999     76 8999999999999999998643221   12334678999999999999975


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee---ecCceeeE
Q 026765           79 ADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEVNE  154 (233)
Q Consensus        79 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~  154 (233)
                       .++++|+.|++|++||++++++...+.. ...+.+++|+|+++++++++.|+.+++||+.........   .+...+.+
T Consensus        89 -~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           89 -CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             -TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             -CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence             6889999999999999999887776654 456778999999999999999999999999754332222   23456899


Q ss_pred             EEECCCC----------CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          155 IAWNMTG----------EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       155 ~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +.|+|++          +++++++.|+.+++|| ...+....+.+|...|.+++|+|++++|++|+.||.|+|||+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999987          7899999999999999 4566777888999999999999999999999999999999994

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-36  Score=236.64  Aligned_cols=215  Identities=25%  Similarity=0.458  Sum_probs=187.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..++.+|.+.|++++|+|++++|++|+.|+.|++|++....    ....+.+|...|.+++|+|++ ++|++|+.|+.|+
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~   90 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLK   90 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----cchhhccCCCceEEEEEcCCC-CEEEEECCCCEEE
Confidence            35788999999999999999999999999999999986422    234578999999999999975 6889999999999


Q ss_pred             EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +||++++++...+..+ ..+.+++|+|+++++++++.|+.+++||+++.+.+.... +..++.++.|+++++++++++.|
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            9999998877766544 456789999999999999999999999999887766544 45679999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.+++||.++.+.+..+. .+...+.+++|+|++++|++++.|+.|++||+.+++++++|..+
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  233 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH  233 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence            999999999888777654 45667899999999999999999999999999999999988654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-36  Score=240.45  Aligned_cols=213  Identities=17%  Similarity=0.239  Sum_probs=183.5

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+++.+|.+.|++++|+|++++|+||+.|++|+|||+....    ....++.|...|.+++|+|++ .+|++|+.|+.|
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v  121 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNIC  121 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECSSSCEEEEEECTTS-SEEEEEETTCEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----cceEeecCCccEEEEEECCCC-CEEEEEeCCCeE
Confidence            346789999999999999999999999999999999986432    234567899999999999975 688999999999


Q ss_pred             EEEECCCCe----eeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEE
Q 026765           92 RLWDARSGK----CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        92 ~iwd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  165 (233)
                      ++||+.++.    ....+. ..+.+.++.|++++ .+++++.|+.+++||+++.+.+.... +...+.+++|+|++++++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            999997653    222232 23456678888776 48899999999999999888776554 456799999999999999


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +++.|+.+++||.++++....+.+|...|++++|+|++++|++|+.||+|+|||++.+.++.++.
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999988887764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.1e-37  Score=238.47  Aligned_cols=208  Identities=20%  Similarity=0.337  Sum_probs=171.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~   92 (233)
                      ..+.+|.+.|++++|+|+|++||||+.|++|+||++......  ....+.+|..+|.+++|+|. .+.+|++|+.|++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~--~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK--LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE--EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            457899999999999999999999999999999998642211  23467899999999999764 357899999999999


Q ss_pred             EEECCCCee--eeeee-ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCee---eeeeecCceeeEEEECCC----
Q 026765           93 LWDARSGKC--SQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKP---IHRRKFGYEVNEIAWNMT----  160 (233)
Q Consensus        93 iwd~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~----  160 (233)
                      +||+++++.  ...+. ....+.+++|+|+  +.+|++++.|+.+++||++....   .....+...+.+++|+|+    
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            999987743  22222 2356778999997  88999999999999999976532   122234567899999997    


Q ss_pred             ---------CCEEEEEeCCCeEEEEecCCce----eeeEEeeecCceeEEEECCCC---CEEEEeeCCCcEEEEecCCc
Q 026765          161 ---------GEMFFLTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       161 ---------~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~i~~~p~~---~~las~s~dg~v~iwd~~~~  223 (233)
                               ++++++++.|+.+++||.++.+    ....+.+|...|.+++|+|++   ++||+|+.|++|+|||++..
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                     5789999999999999987644    556788999999999999985   79999999999999999763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1e-36  Score=242.35  Aligned_cols=203  Identities=20%  Similarity=0.381  Sum_probs=179.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i   91 (233)
                      ...+.+|.+.|++++|+|++..|+||+.|++|++||++...    ....+.+|...|.+++|+|.. +.+|++|+.|+.|
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v  222 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA  222 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred             ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence            45677899999999999999999999999999999987532    234678999999999998853 4789999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEE
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  167 (233)
                      ++||++++++...+..+ ..+.+++|+|++.++++++.|+.+++||++..+.+.....   ...+.+++|+|++++++++
T Consensus       223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  302 (354)
T 2pbi_B          223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG  302 (354)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEE
Confidence            99999999887766543 5577899999999999999999999999998776554432   2367899999999999999


Q ss_pred             eCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +.|+.+++||..+++.+..+.+|...|.+++|+|++++|++|+.||+|+||+
T Consensus       303 ~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999998888888999999999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-36  Score=257.45  Aligned_cols=218  Identities=20%  Similarity=0.291  Sum_probs=181.0

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc----------ee-----------------------
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK----------VK-----------------------   58 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~----------~~-----------------------   58 (233)
                      ..++|.+|.+.|++++|+|+|++||||+.|++|+|||+.......          +.                       
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence            346788999999999999999999999999999999985311100          00                       


Q ss_pred             ---------eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcC
Q 026765           59 ---------DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNR  128 (233)
Q Consensus        59 ---------~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~  128 (233)
                               ...+.+|...|.+++|+|+++..|++|+.|++|++||..++++...+..+ ..+.+++|+|++++|++++.
T Consensus       131 v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence                     00235678888888898887667899999999999999888776666543 45778999999999999999


Q ss_pred             CCcEEEEEcCCCeeeeee--------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee---------------
Q 026765          129 DDELTILDVRKFKPIHRR--------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD---------------  185 (233)
Q Consensus       129 d~~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------  185 (233)
                      |+.+++||+.+.+.....        .+...+.+++|+|+++++++++.|+++++||..+++.+.               
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~  290 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI  290 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence            999999999887766544        245679999999999999999999999999988765433               


Q ss_pred             ----------------------------EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          186 ----------------------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       186 ----------------------------~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                                                  .+.+|...|++++|+|++++|++|+.|++|++||+.++++.+.+
T Consensus       291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~  362 (611)
T 1nr0_A          291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF  362 (611)
T ss_dssp             EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred             EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence                                        33478899999999999999999999999999999998887665

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.5e-37  Score=239.94  Aligned_cols=218  Identities=20%  Similarity=0.347  Sum_probs=176.8

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~   92 (233)
                      +.+.+|.+.|++++|+|++++|++|+.|++|++|++............+.+|...|.+++|+|. ++.+|++|+.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4668999999999999999999999999999999997543322334467899999999999985 357899999999999


Q ss_pred             EEECCCCe---------eeeeee-ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCeeee----------------
Q 026765           93 LWDARSGK---------CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIH----------------  144 (233)
Q Consensus        93 iwd~~~~~---------~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~----------------  144 (233)
                      +||++.++         ....+. ....+.+++|+|+  +.++++++.|+.+++||+++.+.+.                
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998763         333333 3456778999999  9999999999999999986533110                


Q ss_pred             --------------------------------------------ee-ecCceeeEEEECCCC----CEEEEEeCCCeEEE
Q 026765          145 --------------------------------------------RR-KFGYEVNEIAWNMTG----EMFFLTTGNGTVEV  175 (233)
Q Consensus       145 --------------------------------------------~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~  175 (233)
                                                                  .. .+...+.+++|+|++    +++++++.||.+++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                        00 123468899999998    89999999999999


Q ss_pred             EecCCc----------------------------------------------eeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765          176 LTYPSL----------------------------------------------RPLDTVVAHTAGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       176 ~~~~~~----------------------------------------------~~~~~~~~~~~~v~~i~~~p~~~~las~  209 (233)
                      ||.+..                                              +.+..+.+|...|++++|+|++++|++|
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            998653                                              5666677899999999999999999999


Q ss_pred             eCCCcEEEEecCCc---EEEEeeec
Q 026765          210 SADSLVSLWDISEM---LCVRTFTK  231 (233)
Q Consensus       210 s~dg~v~iwd~~~~---~~i~~~~~  231 (233)
                      +.||.|+|||+..+   .+++++..
T Consensus       325 ~~dg~v~iw~~~~~~~~~~~~~~~~  349 (351)
T 3f3f_A          325 GDDGKVRLWKATYSNEFKCMSVITA  349 (351)
T ss_dssp             ETTSCEEEEEECTTSCEEEEEEEC-
T ss_pred             cCCCcEEEEecCcCcchhheeehcc
Confidence            99999999999976   45555543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-37  Score=244.59  Aligned_cols=206  Identities=16%  Similarity=0.256  Sum_probs=173.5

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...+|.+.|++++|+|++++|+||+.|++|++||+...    .....+.+|...|.+++|+|++..++++++.|+.|++|
T Consensus       134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w  209 (357)
T 4g56_B          134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW  209 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred             ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence            44589999999999999999999999999999998642    23446789999999999999887788999999999999


Q ss_pred             ECCCCeeeeeeee---cCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC-CEEEEEe
Q 026765           95 DARSGKCSQQAEL---SGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG-EMFFLTT  168 (233)
Q Consensus        95 d~~~~~~~~~~~~---~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~  168 (233)
                      |+++++.......   ...+.+++|+|++ .++++|+.|+.|++||+++.+.+.... +...+.+++|+|++ +++++++
T Consensus       210 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred             ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe
Confidence            9998876554433   2346789999974 678899999999999999887766544 45679999999987 5688899


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCcEE
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      .|+++++||.++++.+.. .+|...|++++|+| ++++|++|+.||+|++||+.+...
T Consensus       290 ~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          290 EDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             TTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             CCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            999999999998877654 47999999999999 789999999999999999975433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.6e-36  Score=238.12  Aligned_cols=218  Identities=19%  Similarity=0.224  Sum_probs=184.7

Q ss_pred             CCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      +.....+++.+|.+.|++++|+|++++|+|||.|++|+|||..+..    ....+..|...|.+++|+|++ .++++|+.
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~~~~v~~~~~sp~g-~~lasg~~  126 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----KEHAVTMPCTWVMACAYAPSG-CAIACGGL  126 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCEEEECTTS-SEEEEEST
T ss_pred             cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----cceEEecCCCCEEEEEECCCC-CEEEEeeC
Confidence            3334457899999999999999999999999999999999986432    223466788999999999985 68899999


Q ss_pred             CCeEEEEECCCCe------eeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECC
Q 026765           88 DKTVRLWDARSGK------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNM  159 (233)
Q Consensus        88 d~~i~iwd~~~~~------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~  159 (233)
                      |+.+++|++....      ....+. ....+.+++|+|++..+++++.|+.+++||+++.+.+.... +...+.++.++|
T Consensus       127 d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence            9999999986431      112222 33456789999999999999999999999999888776654 456788888877


Q ss_pred             --CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          160 --TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       160 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                        +++++++++.|+.+++||.++++++..+.+|...|++++|+|++++|++|+.|++|++||++...++..+.
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  279 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS  279 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence              46899999999999999999999999999999999999999999999999999999999999888777664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=240.20  Aligned_cols=207  Identities=24%  Similarity=0.409  Sum_probs=171.8

Q ss_pred             cceeeeCccc-cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTGHKK-KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~-~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ...++.+|.+ .|++++|+|+|++||||+.|++|+||++..... ........+|...|.+++|+|++ .+|++|+.|+.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~   84 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDAT   84 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeeccccCCcEEEEEECCCC-CEEEEEECCCc
Confidence            3467889988 999999999999999999999999999864211 11122236899999999999975 68899999999


Q ss_pred             EEEEECCCCe--eeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee---eee-ecCceeeEEEECCCCCE
Q 026765           91 VRLWDARSGK--CSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRR-KFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        91 i~iwd~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~-~~~~~~~~~~~~~~~~~  163 (233)
                      +++||+..+.  +...+.. ...+.+++|+|++++|++++.|+.+++||++.....   ... .+...+.+++|+|++++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            9999998764  3333332 356778999999999999999999999999765432   222 23457999999999999


Q ss_pred             EEEEeCCCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          164 FFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      +++++.|+.+++|+.+..+  ....+.+|...|++++|+|++++|++|+.|++|+|||.
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            9999999999999987664  45678899999999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.4e-36  Score=236.89  Aligned_cols=218  Identities=19%  Similarity=0.282  Sum_probs=187.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+..|...|.+++|+|++++|++|+.|+.|++|++............+.+|...|.++.|++++  .+++++.|+.|+
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~  167 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCA  167 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEE
Confidence            456788999999999999999999999999999999875432223344678999999999998864  478999999999


Q ss_pred             EEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +||++++++...+.. ...+.+++|+|+++++++|+.|+.+++||+++........ +...+.+++|+|+++++++++.|
T Consensus       168 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            999999987776654 3567789999999999999999999999999877665544 45679999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          171 GTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.+++||.+..+.+..+..  +...|.+++|+|++++|++|+.||.|+|||+.++.++.++.++
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h  311 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC
Confidence            9999999988877666542  2347999999999999999999999999999999999888765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-36  Score=241.47  Aligned_cols=207  Identities=25%  Similarity=0.376  Sum_probs=179.3

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      ..|++++|+|+|++|++|+.|++|+|||+...    .....+.+|...|.+++|+|++ ..|++|+.|+.|++||+++++
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe
Confidence            35999999999999999999999999998642    1334678999999999999985 578899999999999999998


Q ss_pred             eeeeeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeee--------ecCceeeEEEECCCCCEEEEEeCCC
Q 026765          101 CSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR--------KFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      +...+.....+..++++| +++++++++.|+.+++||+++.+.+...        .+...+.+++|+|+++++++++.|+
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            877777777788899999 8999999999999999999887665443        2345689999999999999999999


Q ss_pred             eEEEEecCCc------------eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          172 TVEVLTYPSL------------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       172 ~v~~~~~~~~------------~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .+++||++..            .....+.+|...|.+++|+|++++|++|+.|+.|++||+.++.++.++..+
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            9999998642            234567789999999999999999999999999999999999999888765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3e-37  Score=251.70  Aligned_cols=216  Identities=16%  Similarity=0.214  Sum_probs=175.2

Q ss_pred             eeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +...+|...|+||+|+|. +++||+|+.||+|+|||+....  ......+.+|...|++++|+|.++.+|+||+.|++|+
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            356689999999999994 6799999999999999987533  2233456789999999999997778999999999999


Q ss_pred             EEECCCCeeeeeeeecC---CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCC-EEEEEe
Q 026765           93 LWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLTT  168 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  168 (233)
                      +||++++........+.   ...+++|+|++.+|++|+.|+.|.+||++.........+...+.+++|+|+++ ++++++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence            99998765433222222   24568999999999999999999999987543332233456799999999987 577889


Q ss_pred             CCCeEEEEecCCceeeeE---EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          169 GNGTVEVLTYPSLRPLDT---VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .|+.+++||++..+....   ..+|...|++++|+|++++|++|+.||.|+|||+.++.+...+..
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            999999999987654333   357999999999999999999999999999999998877666543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-36  Score=241.69  Aligned_cols=222  Identities=19%  Similarity=0.293  Sum_probs=175.0

Q ss_pred             CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc-----------------------------ee-
Q 026765            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-----------------------------VK-   58 (233)
Q Consensus         9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~-----------------------------~~-   58 (233)
                      .....+++.+|.+.|++++|+|++++|+||+.|++|+|||+.......                             +. 
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            334457899999999999999999999999999999999975321000                             00 


Q ss_pred             ---------------eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee------ecCCeeEEEEC
Q 026765           59 ---------------DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE------LSGENINITYK  117 (233)
Q Consensus        59 ---------------~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~  117 (233)
                                     ...+.+|...|.++.|.|++...|++|+.|++|++||++++++...+.      ....+.+++++
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence                           001346666677777777656667888889999999988887665442      22345678887


Q ss_pred             C-CCCeEEEEcCCCcEEEEEcCCC-eeeeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecC--
Q 026765          118 P-DGTHIAVGNRDDELTILDVRKF-KPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA--  192 (233)
Q Consensus       118 ~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--  192 (233)
                      + +++++++|+.|+.+++||++.. +.+... .+...+.+++|+|+++++++++.|+++++||.++++.+..+..+..  
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            6 8899999999999999999743 333333 2456799999999999999999999999999999888777665432  


Q ss_pred             -----ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          193 -----GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       193 -----~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                           .|.+++|+|+|++|++|+.||.|+|||+..++++.++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  337 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG  337 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence                 48899999999999999999999999999998887773

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=233.71  Aligned_cols=207  Identities=19%  Similarity=0.277  Sum_probs=167.1

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEE-ec-CcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RG-HADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ..+++.+|.++|++++|+|+  +||||+.|++|++|++..... . ....+ .+ |...|.+++|+|++ .+|++|+.|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-~-~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~   80 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-T-LIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDS   80 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-E-EEEEECTTCCCSCEEEEEECTTS-SEEEEEETTS
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-E-EEEEEecCCccCCEEEEEECCCC-CEEEEEeCCC
Confidence            35688999999999999987  999999999999999864321 1 12223 34 99999999999975 6889999999


Q ss_pred             eEEEEECCCC-------eeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC----eeeeee-ecCceeeEEE
Q 026765           90 TVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF----KPIHRR-KFGYEVNEIA  156 (233)
Q Consensus        90 ~i~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~-~~~~~~~~~~  156 (233)
                      .|++||+...       ++...+. ....+.+++|+|++++|++++.|+.+++||++..    +.+... .+...+.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999998532       2233332 2356778999999999999999999999999532    223322 2456799999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeEEEECCC--CCEEEEeeCCCcEEEEecCCc
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~--~~~las~s~dg~v~iwd~~~~  223 (233)
                      |+|+++++++++.|+.+++|+....  +++..+.+|...|.+++|+|+  +.+|++|+.|++|+|||+..+
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            9999999999999999999998655  677888899999999999998  678999999999999999765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.1e-36  Score=238.62  Aligned_cols=213  Identities=18%  Similarity=0.208  Sum_probs=175.2

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...+|.+.|++++|+|++. +++++.|++|+|||+..............+|...|.+++|+|++ .+|++|+.|+.|++|
T Consensus        89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVW  166 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence            3457999999999999875 55678899999999876443333344566899999999999975 678999999999999


Q ss_pred             ECCCCeeeeeeeec-CCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCCC-CEEEEEe
Q 026765           95 DARSGKCSQQAELS-GENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTG-EMFFLTT  168 (233)
Q Consensus        95 d~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~  168 (233)
                      |++++++...+..+ ..+.+++|+|++. .+++++.|+.|++||+++.++.....   ....+.+++|+|++ +++++++
T Consensus       167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence            99999887776543 5667899999875 78899999999999998877665443   23468899999985 5788899


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .|+.+++||.++++.+..+.+|...|++++|+|++ ++||+|+.|++|+|||++++++++.+
T Consensus       247 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            99999999999999999999999999999999987 57999999999999999999988765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.4e-35  Score=228.81  Aligned_cols=218  Identities=19%  Similarity=0.302  Sum_probs=183.8

Q ss_pred             ceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           13 SREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ..+|.||++.|++|+|+|+ +++|||||.|++|+|||+...... ......+.+|...|.+++|+|++ .+|++|+.|+.
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~  109 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGT  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccccc
Confidence            3578999999999999998 589999999999999999754322 23344678999999999999975 68899999999


Q ss_pred             EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEECCCC--CEEE
Q 026765           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTG--EMFF  165 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~  165 (233)
                      |++|+............. .......+.+++.++++++.|+.+.+||+..........  +...+..++|++++  .+++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999888765554443 445567889999999999999999999987655443322  34567888888765  4677


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +++.|+.+++|+.++.+....+.+|...|++++|+|++++|++|+.||.|+|||+.+..+++.+..
T Consensus       190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  255 (340)
T 4aow_A          190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG  255 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence            889999999999999999999999999999999999999999999999999999999999888764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=231.27  Aligned_cols=215  Identities=20%  Similarity=0.317  Sum_probs=187.2

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      .....+.+|.+.|++++|+|++++|++|+.|+.|++||+....    ....+.+|...|.+++|+|++ .+|++++.|+.
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~   97 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYS   97 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTTE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----hhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCe
Confidence            3446789999999999999999999999999999999986422    334678899999999999974 68899999999


Q ss_pred             EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC-----CcEEEEEcCCCeee-----------eeee-cCc--e
Q 026765           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILDVRKFKPI-----------HRRK-FGY--E  151 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~-----------~~~~-~~~--~  151 (233)
                      |++||+.++++...+.....+.+++|+|+++++++++.+     +.+.+||+......           .... ...  .
T Consensus        98 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B           98 IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            999999999888887777788899999999999999998     99999998654321           1111 111  7


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+++|+++++++++++.+|.+.+||.++ .+....+..|...|.+++|+|++++|++++.|+.|++||+.++.+++.+.
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            88999999999999999999999999988 78888899999999999999999999999999999999999999888775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2e-36  Score=237.08  Aligned_cols=207  Identities=20%  Similarity=0.338  Sum_probs=163.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~   92 (233)
                      ..+.+|.+.|++++|+|+|++||||+.|++|+|||+....  ......+.+|...|.+++|+|. ++.+|+||+.|++|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            4567999999999999999999999999999999986421  1233467899999999999753 356889999999999


Q ss_pred             EEECCCCee--eeeee-ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCeee---ee-eecCceeeEEEECCC---
Q 026765           93 LWDARSGKC--SQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPI---HR-RKFGYEVNEIAWNMT---  160 (233)
Q Consensus        93 iwd~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~---~~-~~~~~~~~~~~~~~~---  160 (233)
                      +||+++++.  ...+. ....+.+++|+|+  +.+|++++.|+.+++||++.....   .. ..+...+..+.|+|+   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            999988743  33332 3345778999998  789999999999999999765321   11 123346788999987   


Q ss_pred             --------------CCEEEEEeCCCeEEEEecCCc---eeeeEEeeecCceeEEEECCCC----CEEEEeeCCCcEEEEe
Q 026765          161 --------------GEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSLWD  219 (233)
Q Consensus       161 --------------~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~i~~~p~~----~~las~s~dg~v~iwd  219 (233)
                                    ++++++++.|+.+++|+.+..   +....+.+|...|.+++|+|++    ++||+|+.|++|+|||
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          478999999999999998754   4667788999999999999986    7899999999999999


Q ss_pred             cCC
Q 026765          220 ISE  222 (233)
Q Consensus       220 ~~~  222 (233)
                      +.+
T Consensus       245 ~~~  247 (316)
T 3bg1_A          245 CDD  247 (316)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            876

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.8e-35  Score=227.23  Aligned_cols=216  Identities=24%  Similarity=0.419  Sum_probs=184.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ....+.+|...|++++|+|++++|++|+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i  131 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESV  131 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCE
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcE
Confidence            346778999999999999999999999999999999986432    234578999999999999975 688999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEECCCCCEEEEEe
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      ++||++++++...+..+ ..+.+++|+|+++++++++.|+.+++||+++.+.+....  ....+..++|+|+++++++++
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            99999998877766544 456789999999999999999999999999877665543  235688999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeE--EE-ECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYC--IA-IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~--i~-~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .|+.+++||.++++.+..+.+|...+.+  .. ..+++.+|++|+.||.|++||+.++++++++.++
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            9999999999999998888888765433  23 3467889999999999999999999999998765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.3e-35  Score=250.62  Aligned_cols=216  Identities=19%  Similarity=0.294  Sum_probs=185.1

Q ss_pred             eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+.+|++.|++|+|+|++ ++|+|||.|++|++|++...... ......+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v  454 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGEL  454 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcE
Confidence            4688999999999999875 78999999999999998653321 23344678999999999999975 688999999999


Q ss_pred             EEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee----ecCceeeEEEECCCC--CEE
Q 026765           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTG--EMF  164 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~  164 (233)
                      ++||+.++++...+.. ...+.+++|+|++++|++++.|+.|++||+.........    .+...+.+++|+|++  ..+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            9999999987776654 456778999999999999999999999998654433221    133458999999987  579


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++++.|+.+++||.++.+....+.+|...|.+++|+|++++|++|+.||.|+|||+.++++++++.
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            999999999999999988888999999999999999999999999999999999999999887764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-34  Score=225.81  Aligned_cols=210  Identities=17%  Similarity=0.300  Sum_probs=177.0

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.+.+|...|++++|+|++++|+||+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~  132 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIK  132 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEE
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC----eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEE
Confidence            46788999999999999999999999999999999986421    334678999999999999975 6889999999999


Q ss_pred             EEECCCCeeeeeee-ecCCeeEEEECCC------CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEE
Q 026765           93 LWDARSGKCSQQAE-LSGENINITYKPD------GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  164 (233)
                      +||++... ...+. ....+..+.+.|.      +..+++++.|+.+++||+++.+...... +...+.+++|+|+++++
T Consensus       133 vwd~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          133 VWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             EEETTSCE-EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred             EEECCCCe-EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence            99997543 33333 3455667888884      4589999999999999999877665433 55679999999999999


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++++.|+.+++||..+.+.+..+.. ...|.+++|+|++.+|++++.++ +++|++.....+..+.
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~  275 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLR  275 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccC
Confidence            9999999999999999988888765 46799999999999999887654 9999999888777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.9e-36  Score=239.34  Aligned_cols=207  Identities=25%  Similarity=0.415  Sum_probs=174.8

Q ss_pred             ceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEE-----ecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .+.+.+|.+.|.+++|+|++ ..|+||+.|++|++||+....  .+  ..+     .+|...|.+++|++.++.++++|+
T Consensus       150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs  225 (380)
T 3iz6_a          150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--RI--SIFGSEFPSGHTADVLSLSINSLNANMFISGS  225 (380)
T ss_dssp             CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--EE--EEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred             eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--EE--EEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence            35688999999999999974 579999999999999987532  11  122     579999999999887778999999


Q ss_pred             CCCeEEEEECCCC-eeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--------ceeeEEE
Q 026765           87 GDKTVRLWDARSG-KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--------YEVNEIA  156 (233)
Q Consensus        87 ~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~  156 (233)
                      .|+.|++||++.. +....+. ....+.+++|+|++.+|++++.|+.+++||+++.+.+......        ..+.+++
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  305 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA  305 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred             CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence            9999999999843 4444443 3456778999999999999999999999999988776554321        1378999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEE----eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV----VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      |+|+++++++++.||.+++||....+....+    .+|...|.+++|+|++++|++|+.|++|+||++...
T Consensus       306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            9999999999999999999999888777666    579999999999999999999999999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.4e-35  Score=226.27  Aligned_cols=217  Identities=18%  Similarity=0.230  Sum_probs=168.1

Q ss_pred             cceeeeCccccEEEEEECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCC
Q 026765           12 HSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGD   88 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d   88 (233)
                      ...++.+|.++|++++|+|+  +++|+||+.|++|+|||+......  ....+.+|...|.+++|+|+. +.+|++|+.|
T Consensus        45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE--EEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence            35688999999999999864  899999999999999998753211  223567899999999999973 4688999999


Q ss_pred             CeEEEEECCCCeee--eeee-ecCCeeEEEECCC-------------CCeEEEEcCCCcEEEEEcCCCe----eeeeee-
Q 026765           89 KTVRLWDARSGKCS--QQAE-LSGENINITYKPD-------------GTHIAVGNRDDELTILDVRKFK----PIHRRK-  147 (233)
Q Consensus        89 ~~i~iwd~~~~~~~--~~~~-~~~~~~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~-  147 (233)
                      +.|++||++++...  ..+. ....+.+++|+|+             +++|++|+.|+.|++||+++.+    ...... 
T Consensus       123 ~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~  202 (297)
T 2pm7_B          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (297)
T ss_dssp             SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence            99999999876321  2222 2345678999997             5789999999999999997654    222222 


Q ss_pred             cCceeeEEEECCCC---CEEEEEeCCCeEEEEecCCce---eeeEE--eeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          148 FGYEVNEIAWNMTG---EMFFLTTGNGTVEVLTYPSLR---PLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       148 ~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~---~~~~~--~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +...+.+++|+|++   +++++++.|+.+++|+.+...   ....+  ..|...|.+++|+|++++||+++.|+.|+||+
T Consensus       203 H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            45579999999985   889999999999999987532   11122  46788999999999999999999999999999


Q ss_pred             cC---CcEEEEeee
Q 026765          220 IS---EMLCVRTFT  230 (233)
Q Consensus       220 ~~---~~~~i~~~~  230 (233)
                      ..   .-+++.++.
T Consensus       283 ~~~~g~w~~~~~~~  296 (297)
T 2pm7_B          283 ENLEGKWEPAGEVH  296 (297)
T ss_dssp             ECTTSCEEEC----
T ss_pred             ECCCCcEEeccccc
Confidence            87   235555543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=233.14  Aligned_cols=217  Identities=23%  Similarity=0.380  Sum_probs=167.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..++.+|.+.|++++|+|++++|+||+.|++|++||+..... ......+.+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~  175 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVK  175 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-EEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEE
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-eEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEE
Confidence            457889999999999999999999999999999999865321 12233577899999999999985 5788999999999


Q ss_pred             EEECCCCeee--eeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe---------------eeeeee--cCcee
Q 026765           93 LWDARSGKCS--QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK---------------PIHRRK--FGYEV  152 (233)
Q Consensus        93 iwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~--~~~~~  152 (233)
                      +||++.++..  ..+. ....+.+++|+|++++|++++.|+.|++||.....               .+....  +...+
T Consensus       176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  255 (345)
T 3fm0_A          176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI  255 (345)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred             EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence            9999887533  3333 23567789999999999999999999999963211               111111  34568


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEecCCce----ee-----eEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCC
Q 026765          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLR----PL-----DTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~-----~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~  222 (233)
                      ..++|++++..+++++.|+.+++|+.....    +.     ....+|...|++++|+|++ .+||+|+.||+|++|++.+
T Consensus       256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          256 YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            999999999999999999999999976432    11     1224688999999999998 4999999999999999999


Q ss_pred             cEEEEeeec
Q 026765          223 MLCVRTFTK  231 (233)
Q Consensus       223 ~~~i~~~~~  231 (233)
                      .+..+.+++
T Consensus       336 ~~~~~~~~~  344 (345)
T 3fm0_A          336 PEGLHHHHH  344 (345)
T ss_dssp             ---------
T ss_pred             CCCcccccC
Confidence            888777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.6e-35  Score=233.68  Aligned_cols=215  Identities=13%  Similarity=0.160  Sum_probs=177.8

Q ss_pred             ceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+.+|.+.|++++|+|++ ++|++|+.|++|+|||+....  ........+|...|.+++|+|+++.+|++|+.|+.|
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            35678999999999999999 999999999999999987432  223333457999999999999656789999999999


Q ss_pred             EEEECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCC-EEEE
Q 026765           92 RLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGE-MFFL  166 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~  166 (233)
                      ++||++...........   ..+.+++|+|+++++++++.|+.+.+||++ .+.+... .+...+.+++|+|+++ ++++
T Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            99999864332222222   446789999999999999999999999995 4444433 3567899999999999 8999


Q ss_pred             EeCCCeEEEEecCC----ceeeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          167 TTGNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       167 ~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ++.|+.+++||.++    .+.+..+ +|...|.+++|+| ++++|++++.|+.|+|||++++.+++++..
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  291 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII  291 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence            99999999999986    4455555 7999999999999 999999999999999999998877666653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-35  Score=229.26  Aligned_cols=209  Identities=20%  Similarity=0.339  Sum_probs=159.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ....+.+|.+.|++++|+|++++|+||+.|++|++||+............+.+|...|.+++|+|++ .+|++|+.|++|
T Consensus        99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i  177 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTV  177 (330)
T ss_dssp             EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCE
T ss_pred             eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeE
Confidence            3457889999999999999999999999999999999853222222334578999999999999975 688999999999


Q ss_pred             EEEECCCC--eeeeeeee-cCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCC--------eeeeeee--cCceeeEEE
Q 026765           92 RLWDARSG--KCSQQAEL-SGENINITYKPD--GTHIAVGNRDDELTILDVRKF--------KPIHRRK--FGYEVNEIA  156 (233)
Q Consensus        92 ~iwd~~~~--~~~~~~~~-~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~--~~~~~~~~~  156 (233)
                      ++||...+  ++...+.. ...+.+++|+|+  +.++++++.|+.|++||++..        .......  +...+.+++
T Consensus       178 ~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  257 (330)
T 2hes_X          178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA  257 (330)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE
T ss_pred             EEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE
Confidence            99998776  34444433 356778999998  678999999999999998643        1122221  445799999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCce--eeeE-EeeecC-ceeEEEECC--CCCEEEEeeCCCcEEEEecCC
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLR--PLDT-VVAHTA-GCYCIAIDP--MGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~-~~~~~~-~v~~i~~~p--~~~~las~s~dg~v~iwd~~~  222 (233)
                      |+++ .++++++.||.+++|+..+++  .... +.+|.. .|++++|+|  ++++||+|+.||+|+|||++.
T Consensus       258 ~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          258 WGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            9965 489999999999999987653  3333 346776 899999999  689999999999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-34  Score=231.69  Aligned_cols=200  Identities=21%  Similarity=0.353  Sum_probs=169.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecC------------------cCcEEEEEEcCCCC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH------------------ADSVDQLCWDPKHA   79 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~   79 (233)
                      +|.+.|++++|+|+|++||+|+ |++++||++....  .  ...+.+|                  ...|.+++|+|++ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-  135 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--L--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-  135 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC--E--EEEECC-----------------CCCCBEEEEEECTTS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC--E--EEEecCccccccccccccccccCCCceeEEEEEECCCC-
Confidence            6999999999999999999977 7899999986432  1  1122222                  2359999999975 


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEEC
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  158 (233)
                      .+|++|+.|+.|++||+.+++....+..+ ..+.+++|+|++.+|++++.|+.+++||+++.+..........+..++|+
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~  215 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS  215 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEE
Confidence            68899999999999999998877666543 55778999999999999999999999999998877766667789999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEecCCceeeeEE-------eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          159 M-TGEMFFLTTGNGTVEVLTYPSLRPLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       159 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      | +++++++++.|+.+++||.++++.+..+       .+|...|.+++|+|++++|++|+.|+.|++||+...
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9 8999999999999999999887776665       578899999999999999999999999999999753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=225.74  Aligned_cols=217  Identities=22%  Similarity=0.319  Sum_probs=177.8

Q ss_pred             ceeeeCccccEEEEEECcC---CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~---~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      .+.+.+|.+.|++++|+|+   |++|++|+.|+.|++|++....  ......+.+|...|.+++|+|++ .+|++|+.|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg  108 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDK  108 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcCC-CEEEEEcCCC
Confidence            3477899999999999999   5999999999999999997522  22334678899999999999975 6788999999


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEE--CCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC------------------
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG------------------  149 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------  149 (233)
                      .|++||+++++..........+.+++|  +|++.++++++.|+.+++||+++.+.+......                  
T Consensus       109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA  188 (368)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred             cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence            999999999988776666677888999  999999999999999999999876654433321                  


Q ss_pred             ------------------------ceeeEEEECCCCCE----EEEEeCCCeEEEEecCCc---eeeeEEeeecC------
Q 026765          150 ------------------------YEVNEIAWNMTGEM----FFLTTGNGTVEVLTYPSL---RPLDTVVAHTA------  192 (233)
Q Consensus       150 ------------------------~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~------  192 (233)
                                              .....+.+.++...    +++++.++.+++|+.+..   +....+.+|..      
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence                                    12233333333333    899999999999999876   45666677765      


Q ss_pred             ------ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          193 ------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       193 ------~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                            .|.+++|+|++++|++|+.||.|+|||+.++++++++..+
T Consensus       269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL  314 (368)
T ss_dssp             CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence                  7999999999999999999999999999999999988764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-34  Score=226.81  Aligned_cols=217  Identities=22%  Similarity=0.337  Sum_probs=170.3

Q ss_pred             ceeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~   89 (233)
                      ..++.+|.+.|++++|+|  ++++|+||+.|++|++||+.....  .....+.+|...|.+++|+|++ +.+|++|+.|+
T Consensus        50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~  127 (316)
T 3bg1_A           50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG  127 (316)
T ss_dssp             EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred             EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence            457889999999999986  489999999999999999864321  2334578899999999999973 46889999999


Q ss_pred             eEEEEECCCCeee---eeee-ecCCeeEEEECCC-----------------CCeEEEEcCCCcEEEEEcCCC---eeeee
Q 026765           90 TVRLWDARSGKCS---QQAE-LSGENINITYKPD-----------------GTHIAVGNRDDELTILDVRKF---KPIHR  145 (233)
Q Consensus        90 ~i~iwd~~~~~~~---~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~  145 (233)
                      .|++||++.+...   .... ....+.+++|+|+                 +.+|++|+.|+.|++||++..   +....
T Consensus       128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred             CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence            9999999875321   1111 1234556889887                 468999999999999999754   23322


Q ss_pred             ee-cCceeeEEEECCCC----CEEEEEeCCCeEEEEecCCc---e-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          146 RK-FGYEVNEIAWNMTG----EMFFLTTGNGTVEVLTYPSL---R-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       146 ~~-~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      .. +...+.+++|+|++    +++++++.|+++++|+..+.   + ....+..|...|++++|+|++++||+|+.|++|+
T Consensus       208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence            22 44579999999987    78999999999999998652   1 2334567899999999999999999999999999


Q ss_pred             EEecC-C--cEEEEeeec
Q 026765          217 LWDIS-E--MLCVRTFTK  231 (233)
Q Consensus       217 iwd~~-~--~~~i~~~~~  231 (233)
                      ||+.. .  -.+++++.+
T Consensus       288 lw~~~~~g~~~~~~~~~~  305 (316)
T 3bg1_A          288 LWKESVDGQWVCISDVNK  305 (316)
T ss_dssp             EEEECTTSCEEEEEECC-
T ss_pred             EEEECCCCcEEEeeeccC
Confidence            99986 2  267776653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-35  Score=237.10  Aligned_cols=220  Identities=13%  Similarity=0.174  Sum_probs=178.5

Q ss_pred             ccceee-eCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCc-e-eeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           11 LHSREY-TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-V-KDIELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        11 ~~~~~~-~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~-~-~~~~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      ....++ .+|.+.|++++|+| ++++|+||+.|++|+|||+....... . ....+ +|...|.+++|+|+ +.+|++|+
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~l~s~s  130 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN-FDAFAVSS  130 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT-SSEEEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC-CCEEEEEe
Confidence            344566 88999999999999 99999999999999999986511111 1 12223 59999999999996 46889999


Q ss_pred             CCCeEEEEECC---CCeeeeee--------e-----ecCCeeEEE--ECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-
Q 026765           87 GDKTVRLWDAR---SGKCSQQA--------E-----LSGENINIT--YKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-  147 (233)
Q Consensus        87 ~d~~i~iwd~~---~~~~~~~~--------~-----~~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  147 (233)
                      .|+.|++||+.   .++.....        .     ......++.  +++++.++++++.|+.|++||+++.+.+.... 
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            99999999994   44332221        1     112334444  66889999999999999999999888776655 


Q ss_pred             --cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEEC----CCCCEEEEeeCCCcEEEEec
Q 026765          148 --FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAID----PMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       148 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~----p~~~~las~s~dg~v~iwd~  220 (233)
                        +...+.+++|+|+++++++++.||.+++||.+..+++..+. .|...|.+++|+    |++++|++|+.||.|+|||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence              35689999999999999999999999999999999888876 778899999665    46789999999999999999


Q ss_pred             CCcEEEEeeecC
Q 026765          221 SEMLCVRTFTKL  232 (233)
Q Consensus       221 ~~~~~i~~~~~~  232 (233)
                      .+++++++|..+
T Consensus       291 ~~~~~~~~~~~~  302 (437)
T 3gre_A          291 VKGHCQYAFINS  302 (437)
T ss_dssp             TTTEEEEEEESS
T ss_pred             CCCcEEEEEEcC
Confidence            999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-33  Score=223.63  Aligned_cols=207  Identities=19%  Similarity=0.250  Sum_probs=164.6

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+.+.+|...|++++|+|++.+++||+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~  143 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIK  143 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC----EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEE
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEE
Confidence            45788999999999999999999999999999999987532    234678999999999999985 5788999999999


Q ss_pred             EEECCCCeeeeee---eecCCeeEEEECCCC----------CeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEEC
Q 026765           93 LWDARSGKCSQQA---ELSGENINITYKPDG----------THIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWN  158 (233)
Q Consensus        93 iwd~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~  158 (233)
                      +||+.........   .....+.+++|+|++          .++++++.|+.|++||.. .+.... ..+...+.+++|+
T Consensus       144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEEC
T ss_pred             EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEEC
Confidence            9999744322221   123456789999987          689999999999999954 333333 3355679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      |+++++++++.|+.+++||............+...|.+++|+|+++++++| .|+.|++||+.++..+
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence            999999999999999999985433222233456679999999999887755 5888999999876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-33  Score=238.95  Aligned_cols=209  Identities=20%  Similarity=0.279  Sum_probs=169.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-------cCcCcEEEEEEcCCCCCEEEEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-------GHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      ..++.+|.+.|++++|+|+|++||||+.|++|++||+....    ....+.       +|...|.+++|+|++ .+|++|
T Consensus       183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~  257 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASA  257 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEE
T ss_pred             eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCC-CEEEEE
Confidence            35788999999999999999999999999999999986422    112332       799999999999975 678999


Q ss_pred             eCCCeEEEEECCCCeeeeeee--------------------------------------------ecCCeeEEEECCCCC
Q 026765           86 SGDKTVRLWDARSGKCSQQAE--------------------------------------------LSGENINITYKPDGT  121 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~  121 (233)
                      +.|++|++||++++++...+.                                            +...+.+++|+|+++
T Consensus       258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence            999999999998876544321                                            123456799999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCeeeeee-------------------------------------------------------
Q 026765          122 HIAVGNRDDELTILDVRKFKPIHRR-------------------------------------------------------  146 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------------------  146 (233)
                      +|++++.|+.+++||+.+.+.....                                                       
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  417 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL  417 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence            9999999999999998654321100                                                       


Q ss_pred             ----------------------------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCcee--eeEEeeecCceeE
Q 026765          147 ----------------------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP--LDTVVAHTAGCYC  196 (233)
Q Consensus       147 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~  196 (233)
                                                  .+...+.+++|+|+++++++++.|+.+++|+....+.  ... .+|...|++
T Consensus       418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~  496 (611)
T 1nr0_A          418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS  496 (611)
T ss_dssp             EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred             EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE
Confidence                                        0112356789999999999999999999999876543  233 679999999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEecCC-cEEEE
Q 026765          197 IAIDPMGRYFAVGSADSLVSLWDISE-MLCVR  227 (233)
Q Consensus       197 i~~~p~~~~las~s~dg~v~iwd~~~-~~~i~  227 (233)
                      ++|+|++++|++++.|++|++||+.+ +++++
T Consensus       497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~  528 (611)
T 1nr0_A          497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAH  528 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence            99999999999999999999999987 66544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-33  Score=236.99  Aligned_cols=198  Identities=28%  Similarity=0.462  Sum_probs=170.5

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|...|++++|+|++++|++++.|++|++|+...    . ....+.+|...|.+++|+|++ .+|++++.|+.|+
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----~-~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~  451 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----Q-LLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVK  451 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----C-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----C-EEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEE
Confidence            456789999999999999999999999999999999642    1 233578999999999999985 5789999999999


Q ss_pred             EEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +||.. ++....+. ....+.+++|+|++++|++++.|+.|++||.. .+.+.... +...+++++|+|+++++++++.|
T Consensus       452 ~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          452 LWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             EEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence            99975 44444443 34567789999999999999999999999964 44444433 45689999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +.+++||. +++.+..+.+|...|++++|+|++++|++++.|++|++||
T Consensus       530 g~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          530 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999995 6788889999999999999999999999999999999997

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=225.23  Aligned_cols=210  Identities=20%  Similarity=0.317  Sum_probs=174.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~   90 (233)
                      ....+.+|.+.|++++|+|++++|++|+.|++|+||++....  ......+.+|...|.+++|+|+ ++.+|++|+.|+.
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            356788999999999999999999999999999999986321  2233467899999999999865 2578899999999


Q ss_pred             EEEEECCCCe--eeeeee-ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCeeee---eeecCceeeEEEECC---
Q 026765           91 VRLWDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNM---  159 (233)
Q Consensus        91 i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~---  159 (233)
                      |++||+.+++  ...... ....+.+++|+|+  +.++++++.|+.+++||++......   ...+...+.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999886  333333 3456778999999  9999999999999999998763322   223456799999999   


Q ss_pred             ----------CCCEEEEEeCCCeEEEEecCCce----eeeEEeeecCceeEEEECCC---CCEEEEeeCCCcEEEEecCC
Q 026765          160 ----------TGEMFFLTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPM---GRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       160 ----------~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~i~~~p~---~~~las~s~dg~v~iwd~~~  222 (233)
                                +++++++++.|+.+++||.+..+    ....+.+|...|.+++|+|+   +++|++++.||.|+|||+..
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                      69999999999999999986543    45567789999999999999   89999999999999999987


Q ss_pred             c
Q 026765          223 M  223 (233)
Q Consensus       223 ~  223 (233)
                      +
T Consensus       241 ~  241 (379)
T 3jrp_A          241 E  241 (379)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-35  Score=237.52  Aligned_cols=214  Identities=15%  Similarity=0.171  Sum_probs=168.2

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+..|.++|++++|+|++++|++|+.|++|+||++....  ......+.+|...|.+++|+|++ .+|++|+.|+.|++|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEE
Confidence            445578899999999999999999999999999997421  01223567899999999999985 578899999999999


Q ss_pred             ECCCCe---eeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---eeeee--cCceeeEEEECCCCCEEE
Q 026765           95 DARSGK---CSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRRK--FGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        95 d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~  165 (233)
                      |+.+++   .... ......+.+++|+|++++|++++.|+.+++||++..+.   .....  +...+.+++|+|++++++
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            998876   2222 23445677899999999999999999999999987653   33333  456799999999999999


Q ss_pred             EEeCCCeEEEEecC------------------CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE--
Q 026765          166 LTTGNGTVEVLTYP------------------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--  225 (233)
Q Consensus       166 ~~~~~~~v~~~~~~------------------~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~--  225 (233)
                      +++.|+.+++||..                  ..+.+..+ +|...|.+++|+|++++|++|+.||.|+|||+.++++  
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            99999999999984                  24455556 8999999999999999999999999999999998876  


Q ss_pred             --EEeeecC
Q 026765          226 --VRTFTKL  232 (233)
Q Consensus       226 --i~~~~~~  232 (233)
                        ++++..+
T Consensus       242 ~~~~~~~~~  250 (377)
T 3dwl_C          242 RALITVKLS  250 (377)
T ss_dssp             EECCCEECS
T ss_pred             eeeEeecCC
Confidence              6666543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-33  Score=224.92  Aligned_cols=215  Identities=16%  Similarity=0.209  Sum_probs=182.2

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+..|.++|++++|+|++++|++|+.|+.|++|++....  ......+.+|...|.+++|+|++ .+|++++.|+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEE
Confidence            456699999999999999999999999999999987421  11334677899999999999974 688999999999999


Q ss_pred             ECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---eeee--ecCceeeEEEECCCCCEEEE
Q 026765           95 DARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRR--KFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        95 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~  166 (233)
                      |+.+++......   ....+.+++|+|+++++++++.|+.+.+||++..+.   ....  .+...+.+++|+|+++++++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            998887544432   345677899999999999999999999999987652   2222  23457999999999999999


Q ss_pred             EeCCCeEEEEec------------------CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          167 TTGNGTVEVLTY------------------PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       167 ~~~~~~v~~~~~------------------~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      ++.++.+++||.                  ...+.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++++++
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            999999999994                  35677778888999999999999999999999999999999999999988


Q ss_pred             eecC
Q 026765          229 FTKL  232 (233)
Q Consensus       229 ~~~~  232 (233)
                      +..+
T Consensus       240 ~~~~  243 (372)
T 1k8k_C          240 LASE  243 (372)
T ss_dssp             EECS
T ss_pred             EccC
Confidence            8654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-34  Score=230.81  Aligned_cols=215  Identities=13%  Similarity=0.268  Sum_probs=183.5

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .|...|++++|+|++++|++|+.|+.|++|++............+.+|...|.+++|+|+++.+|++|+.|+.|++||++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            58999999999999999999999999999999753222224456788999999999999867889999999999999998


Q ss_pred             CCe------eeeee----eecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeeec-------CceeeEEEECC
Q 026765           98 SGK------CSQQA----ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF-------GYEVNEIAWNM  159 (233)
Q Consensus        98 ~~~------~~~~~----~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~  159 (233)
                      +++      .....    .....+.+++|+|+ +.++++++.|+.+++||+++.+.+.....       ...+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            876      22221    23345678999999 78999999999999999998887766554       46799999999


Q ss_pred             CC-CEEEEEeCCC---eEEEEecCCc-eeeeEEe-eecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          160 TG-EMFFLTTGNG---TVEVLTYPSL-RPLDTVV-AHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       160 ~~-~~~~~~~~~~---~v~~~~~~~~-~~~~~~~-~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++ .++++++.++   .+++||.++. ++...+. +|...|.+++|+| ++++|++++.||.|++||+.++++++++..+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~  304 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR  304 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence            97 5888889898   9999999875 6777777 8999999999999 8999999999999999999999999988764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.1e-33  Score=233.51  Aligned_cols=212  Identities=27%  Similarity=0.407  Sum_probs=180.0

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      +...+.+|...|++++|+|++++|++|+.|++|++|+...    . ....+.+|...|.+++|+|++ ++|++|+.|+.|
T Consensus       336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----~-~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v  409 (577)
T 2ymu_A          336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----Q-LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTV  409 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----C-EEEEEECCSSCEEEEEECTTS-SCEEEEETTSEE
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----C-EEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEE
Confidence            3456789999999999999999999999999999999642    1 233577899999999999986 577899999999


Q ss_pred             EEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      ++||.. ++....+. ....+.+++|+|+++++++++.|+.+++||+..........+...+.+++|+|+++++++++.|
T Consensus       410 ~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          410 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             EEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            999964 44444443 3456678999999999999999999999997543332333456789999999999999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.+++|+. +++.+..+.+|...|++++|+|++++||+++.||.|+|||. ++++++++.++
T Consensus       489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h  548 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH  548 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred             CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence            99999995 67888899999999999999999999999999999999996 57888888765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-33  Score=227.49  Aligned_cols=212  Identities=21%  Similarity=0.348  Sum_probs=177.0

Q ss_pred             ceeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCc---eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      ...+.+|.+.|++++|+| ++++|++|+.|++|+||++.......   .....+.+|...|.+++|+|++..+|++|+.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            345779999999999999 89999999999999999987542110   12346789999999999999977799999999


Q ss_pred             CeEEEEECCCCeeeeee--e-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cC-ceeeEEEECCCCC
Q 026765           89 KTVRLWDARSGKCSQQA--E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FG-YEVNEIAWNMTGE  162 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~  162 (233)
                      +.|++||+++++....+  . ....+.+++|+|++++|++++.|+.+++||+++.+.+....  +. ..+..+.|+++++
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            99999999999887766  2 34567889999999999999999999999999988776652  22 2378999999999


Q ss_pred             EEEEE---eCCCeEEEEecCCcee-eeEEe-eecCceeEEEECCCCCEEE-EeeCCCcEEEEecCCcE
Q 026765          163 MFFLT---TGNGTVEVLTYPSLRP-LDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML  224 (233)
Q Consensus       163 ~~~~~---~~~~~v~~~~~~~~~~-~~~~~-~~~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~~  224 (233)
                      +++++   +.++.+++||.++.+. +.... .|...+.+++|+|++++|+ +|+.||.|++||+.+++
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            99999   7899999999987553 33333 4777899999999999986 55579999999999876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=238.35  Aligned_cols=206  Identities=10%  Similarity=0.098  Sum_probs=168.6

Q ss_pred             eeeCccccEEEEEECcC------CCEEEEEeCCCCEEEEecccCCCC-------ceeeEEEecCcCcEEEEEEcCCCCCE
Q 026765           15 EYTGHKKKVHSVAWNCT------GTKLASGSVDQTARVWHIEPHGHG-------KVKDIELRGHADSVDQLCWDPKHADL   81 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~------~~~l~s~~~D~~v~vW~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~   81 (233)
                      ++.+|.+.|++++|+|+      +.+||||+.|++|+|||+......       ......+.+|...|.+++|++.  ..
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~  279 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TT  279 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--Ce
Confidence            46678999999999997      579999999999999999643211       0012357889999999999975  47


Q ss_pred             EEEEeCCCeEEEEECCCCee-eeeeee-cCCeeEE--EECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeee-c-C-ceee
Q 026765           82 IATASGDKTVRLWDARSGKC-SQQAEL-SGENINI--TYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-F-G-YEVN  153 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-~-~~~~  153 (233)
                      |++|+.||+|++||++++.. ...+.. ...+.++  +|+|++ .+|++++.|+++++||+++.+...... + . ..+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            89999999999999987643 233333 3556677  568887 899999999999999998765443322 1 1 2367


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +++|+|+++.+++++.|+++++||.+.+..+..+.+|...|++++|+|++++|++|+.||+|+|||+..
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            899999999999999999999999998888788899999999999999999999999999999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-33  Score=226.36  Aligned_cols=214  Identities=21%  Similarity=0.378  Sum_probs=174.7

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC--------C-----------------------------ce
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH--------G-----------------------------KV   57 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~--------~-----------------------------~~   57 (233)
                      .+.+|...|++|+|+|+|++||+|+.|++|+|||+.....        .                             ..
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce
Confidence            3457889999999999999999999999999999753210        0                             00


Q ss_pred             eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee----e-eeeecCCeeEEEECCCCCe-EEE--EcCC
Q 026765           58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS----Q-QAELSGENINITYKPDGTH-IAV--GNRD  129 (233)
Q Consensus        58 ~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~----~-~~~~~~~~~~~~~~~~~~~-l~~--~~~d  129 (233)
                      ....+.+|...+..+.|.|++ .++++++.|+.+++||...++..    . .......+.+++|+|.+.. +++  |+.|
T Consensus       222 ~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          222 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence            112356888899999999875 67889999999999999876532    1 1223456678999997654 443  4578


Q ss_pred             CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe--CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEE
Q 026765          130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA  207 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~la  207 (233)
                      +.|++||+++.+..........+..+.|+++++.+++++  .|+.+++||.++++++..+.+|...|++++|+|+|++|+
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            999999999999888888778899999999999998876  689999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEecCCcEEEEee
Q 026765          208 VGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       208 s~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +|+.|++|+|||+.+..+.+..
T Consensus       381 S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          381 SAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             EEETTTEEEEECCSCSSCC---
T ss_pred             EEecCCeEEEEECCCCCccchh
Confidence            9999999999999876655443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-33  Score=224.69  Aligned_cols=217  Identities=14%  Similarity=0.205  Sum_probs=185.8

Q ss_pred             cceeeeCccccEEEEEECcC----C---CEEEEEeCCCCEEEEecccCCCC-ceeeEEEecC-----cCcEEEEEEc---
Q 026765           12 HSREYTGHKKKVHSVAWNCT----G---TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGH-----ADSVDQLCWD---   75 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~----~---~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~~h-----~~~v~~~~~~---   75 (233)
                      ....+.+|...|++++|+|+    +   ++|++++.|+.|++|++...... ......+.+|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            35677899999999999999    9   99999999999999999764321 1113456778     5899999999   


Q ss_pred             -CCCCCE-EEEEeCCCeEEEEECCC------Ceeee-----eee--------ecCCeeEEEECCCCCeEEEEcCCCcEEE
Q 026765           76 -PKHADL-IATASGDKTVRLWDARS------GKCSQ-----QAE--------LSGENINITYKPDGTHIAVGNRDDELTI  134 (233)
Q Consensus        76 -~~~~~~-l~sg~~d~~i~iwd~~~------~~~~~-----~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~i  134 (233)
                       |++ .+ |++|+.|+.|++||++.      ++...     .+.        ....+.+++|+|++ .+++++.|+.+.+
T Consensus       134 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          134 DRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             -----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             CCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence             875 56 88999999999999987      54443     332        24556789999999 9999999999999


Q ss_pred             EEcCCCeeeeeeec-------CceeeEEEECCCCCEEEEEeCC---CeEEEEecCCceeeeEEee-------------ec
Q 026765          135 LDVRKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLTTGN---GTVEVLTYPSLRPLDTVVA-------------HT  191 (233)
Q Consensus       135 ~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~-------------~~  191 (233)
                      ||+++.+.+.....       ...+.+++|+|+++++++++.+   +.+++||.++.+.+..+.+             |.
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            99998888776664       6789999999999999999999   9999999999999989988             99


Q ss_pred             CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..|.+++|+|++++|++++.||.|+|||+.++++++++.
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            999999999999999999999999999999999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-32  Score=212.58  Aligned_cols=208  Identities=18%  Similarity=0.280  Sum_probs=183.5

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      +|...|++++|+|++++|++++.|+.|++|++....  ......+.+|...|.+++|+|++ .++++++.|+.|++||++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC--cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCC
Confidence            799999999999999999999999999999987532  22344677899999999999974 678899999999999999


Q ss_pred             CCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEE
Q 026765           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (233)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  176 (233)
                      +++....+.. ...+.+++|+|+++++++++.|+.+.+||+++.+.+........+.+++|+|+++++++++.++.+++|
T Consensus       172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            9887766653 456778999999999999999999999999998888777777889999999999999999999999999


Q ss_pred             ecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +.++.+. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       252 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          252 HVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence            9987665 356789999999999999999999999999999999998877554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-32  Score=215.80  Aligned_cols=212  Identities=21%  Similarity=0.328  Sum_probs=173.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-----------------------------C-------
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-----------------------------G-------   55 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-----------------------------~-------   55 (233)
                      ..+++.+|...|++++|+|++++|++|+.|+.|++|+......                             .       
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            3467889999999999999999999999999999998642110                             0       


Q ss_pred             ---ceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCC
Q 026765           56 ---KVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDD  130 (233)
Q Consensus        56 ---~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~  130 (233)
                         ........+|...+..++|++++. .++++++.|+.|++||++++++...+.. ...+.+++|+|++++|++++.|+
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence               000112346888999999987654 4678999999999999999887766654 35677899999999999999999


Q ss_pred             cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE---------eeecCceeEEEECC
Q 026765          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV---------VAHTAGCYCIAIDP  201 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~v~~i~~~p  201 (233)
                      .+++||+++.+.+........+..+.|+|++. +++++.|+.+++||.+....+..+         .+|...|++++|+|
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             eEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence            99999999998888877777899999999875 455667999999999877655444         35788999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCcE
Q 026765          202 MGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       202 ~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ++++|++|+.||.|+|||+++|.
T Consensus       317 dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          317 DGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999999885

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=214.97  Aligned_cols=209  Identities=20%  Similarity=0.373  Sum_probs=171.8

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-------------------------------------Cce
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------------------------------------GKV   57 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-------------------------------------~~~   57 (233)
                      .+.+|...|++++|+|++++|+||+.|++|++|+++....                                     ...
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCce
Confidence            3457899999999999999999999999999999753210                                     001


Q ss_pred             eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-----eeeecCCeeEEEECCCCCeE---EEEcCC
Q 026765           58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-----QAELSGENINITYKPDGTHI---AVGNRD  129 (233)
Q Consensus        58 ~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l---~~~~~d  129 (233)
                      ....+.+|...+..+.+.+.+ .++++++.|+.|++||+++++...     .....+.+..+.+.|++..+   ++++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            112356788899999999875 678899999999999998765322     12233456778888876644   356778


Q ss_pred             CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe--CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEE
Q 026765          130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA  207 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~la  207 (233)
                      +.+++||.+.............+..+.|++.++.+++++  .|+.+++||.++++++..+.+|.+.|++++|+|++++||
T Consensus       221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             CEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            999999998888777777777899999999999988765  689999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEecCCcE
Q 026765          208 VGSADSLVSLWDISEML  224 (233)
Q Consensus       208 s~s~dg~v~iwd~~~~~  224 (233)
                      +||.||+|+|||+.+..
T Consensus       301 S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          301 SAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTEEEEECCSCCC
T ss_pred             EEecCCeEEEEECCCCC
Confidence            99999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=220.95  Aligned_cols=216  Identities=17%  Similarity=0.238  Sum_probs=180.2

Q ss_pred             ceeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEE---------EecCcCcEEEEEEcCCCCCEE
Q 026765           13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIE---------LRGHADSVDQLCWDPKHADLI   82 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~~l   82 (233)
                      .+.+.+|.+.|++++|+| ++++|++|+.|++|++|++............         ..+|...|.+++|+|+++.+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            356778999999999999 9999999999999999999754322211100         025999999999999777789


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCC---CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEEC
Q 026765           83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWN  158 (233)
Q Consensus        83 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~  158 (233)
                      ++++.|+.|++||+.+++.............+.+.|.   +.++++++.++.+.+||+++.+.+.... +...+.+++|+
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~  195 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS  195 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred             EEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence            9999999999999999988887777777888899884   4589999999999999999877666554 45679999999


Q ss_pred             CCCCE-EEEEeCCCeEEEEecCCce-eeeEE---------------eeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          159 MTGEM-FFLTTGNGTVEVLTYPSLR-PLDTV---------------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       159 ~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~---------------~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      |+++. +++++.||.+++||.+... ++..+               ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            99994 8899999999999997654 33333               5688899999999999999999999999999999


Q ss_pred             CcEEEEe
Q 026765          222 EMLCVRT  228 (233)
Q Consensus       222 ~~~~i~~  228 (233)
                      +++.+..
T Consensus       276 ~~~~~~~  282 (408)
T 4a11_B          276 NGENTLV  282 (408)
T ss_dssp             TCCBCCC
T ss_pred             CCcccee
Confidence            8776543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-32  Score=212.59  Aligned_cols=203  Identities=20%  Similarity=0.289  Sum_probs=179.7

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|...|++++|+|++++|++++.|+.|++||+...    .....+.+|...|.+++|+|++ .+|++++.|+.|+
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~  208 (337)
T 1gxr_A          134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVR  208 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeecccCceEEEEECCCC-CEEEEEecCCcEE
Confidence            4567789999999999999999999999999999998642    1334577899999999999975 6788999999999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCe
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      +||+++++..........+.+++|+|+++++++++.++.+.+||+++.+......+...+..+.|+|+++++++++.+|.
T Consensus       209 ~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence            99999998887777777888999999999999999999999999988776655556678999999999999999999999


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +++|+.++.+.+.. ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       289 i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          289 LNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999988877643 4588899999999999999999999999999973

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.6e-33  Score=220.93  Aligned_cols=199  Identities=16%  Similarity=0.196  Sum_probs=156.6

Q ss_pred             CccccEEEEEECcCCCEEEE--EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLAS--GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s--~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      .+...+.+++|+|||+++++  ++.|++|||||+....    ...++ .|...|.+++|+|++ +++++++. +.+++|+
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~----~~~~~-~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~  203 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT----EKFEI-ETRGEVKDLHFSTDG-KVVAYITG-SSLEVIS  203 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE----EEEEE-ECSSCCCEEEECTTS-SEEEEECS-SCEEEEE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc----EEEEe-CCCCceEEEEEccCC-ceEEeccc-eeEEEEE
Confidence            34556899999999999765  4579999999986421    22234 477889999999985 57778775 5566777


Q ss_pred             CCCCeeeeeeee---cCCeeEEEECCCCCeEEEEcCCC----cEEEEEcCCCeeeee-----eecCceeeEEEECCCCCE
Q 026765           96 ARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHR-----RKFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        96 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  163 (233)
                      ..+++.......   ...+.+++|+|++.++++++.|+    .+..|++........     ..+...+.+++|+|+|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence            666665433222   22356799999999999998876    578888866543211     123456999999999999


Q ss_pred             EEEEeCCCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +++++.|+.|++||.++++++..+ .+|...|++++|+|+|++||+||.|++|+|||+.+.
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999998886 689999999999999999999999999999999643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=227.65  Aligned_cols=213  Identities=14%  Similarity=0.234  Sum_probs=170.9

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-------CceeeEEEecCc------------CcEEEEEEcCCC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------GKVKDIELRGHA------------DSVDQLCWDPKH   78 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-------~~~~~~~~~~h~------------~~v~~~~~~~~~   78 (233)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.....       .......+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4789999999999999999999999999999874321       111234678898            889999999985


Q ss_pred             C-CEEEEEeCCCeEEEEECCCCeeee---------------------------------------e--eeecCCeeEEEE
Q 026765           79 A-DLIATASGDKTVRLWDARSGKCSQ---------------------------------------Q--AELSGENINITY  116 (233)
Q Consensus        79 ~-~~l~sg~~d~~i~iwd~~~~~~~~---------------------------------------~--~~~~~~~~~~~~  116 (233)
                      . ..|++++.|+.|++||+.++....                                       .  ......+.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            3 578899999999999987644310                                       1  113345678999


Q ss_pred             CCCCCeEEEEcCCCcEEEEEcCCC-eeeeee--------ecCceeeEEEECCCC-CEEEEEeCCCeEEEEecCCcee---
Q 026765          117 KPDGTHIAVGNRDDELTILDVRKF-KPIHRR--------KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRP---  183 (233)
Q Consensus       117 ~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~---  183 (233)
                      +|++++++++ .|+.|++||++.. +.....        .+...+.+++|+|++ +++++++.||.+++||.++.+.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 7999999999843 333211        234569999999998 9999999999999999988776   


Q ss_pred             -eeEEeeecC------------ceeEEEECCCCCEEEEeeCCCcEEEEecCC-cEEEEeeecC
Q 026765          184 -LDTVVAHTA------------GCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKL  232 (233)
Q Consensus       184 -~~~~~~~~~------------~v~~i~~~p~~~~las~s~dg~v~iwd~~~-~~~i~~~~~~  232 (233)
                       ...+..|..            .|.+++|+|++++|++++. +.|+|||+.. +.++++|..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence             677777776            8999999999999999999 9999999986 8888877654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-34  Score=229.13  Aligned_cols=215  Identities=18%  Similarity=0.329  Sum_probs=183.4

Q ss_pred             cceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCC-----CceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765           12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGH-----GKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      ....+.+|.+.|++++|+|+ +++|++++.|++|++||+.....     .......+.+|...|.+++|+|+++.+|+++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            45677899999999999998 89999999999999999975431     1111112457999999999999877899999


Q ss_pred             eCCCeEEEEECCCCeeeeeeee-------cCCeeEEEECCCC-CeEEEEcCCC---cEEEEEcCCC-eeeeeee--cCce
Q 026765           86 SGDKTVRLWDARSGKCSQQAEL-------SGENINITYKPDG-THIAVGNRDD---ELTILDVRKF-KPIHRRK--FGYE  151 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~--~~~~  151 (233)
                      +.|+.|++||+++++....+..       ...+.+++|+|++ .++++++.|+   .|++||+++. .+.....  +...
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~  264 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG  264 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred             cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence            9999999999999887776655       3456789999997 6889999998   9999999875 4444443  5567


Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEE
Q 026765          152 VNEIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       152 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      +.+++|+| +++++++++.|+.+++|+.++.+.+..+..|...|.+++|+|++ .+|++++.||.|+|||+.+....
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            99999999 99999999999999999999999999999999999999999999 89999999999999999877543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-33  Score=245.05  Aligned_cols=206  Identities=12%  Similarity=0.105  Sum_probs=175.6

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...+|.+.|++++|+|++++||+|+.|++|+||+....     .......|...|.+++|+| + .+|++++.|++|++|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lW   84 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----EVVIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVL   84 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----EEEEECSSCCCEEEEEEET-T-TEEEEEETTCEEEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----EEEEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEE
Confidence            34589999999999999999999999999999997531     1222345888999999999 4 488999999999999


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee------------eecCceeeEEEECCC-C
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR------------RKFGYEVNEIAWNMT-G  161 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------------~~~~~~~~~~~~~~~-~  161 (233)
                      |++++++...+.....+.+++|+|+++++++|+.|+.|++||+++.+....            ..+...+.+++|+|+ +
T Consensus        85 d~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           85 SLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             ETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             ECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            999998877777667788999999999999999999999999987764311            113347899999996 4


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeEEeee------------------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAH------------------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ..+++++.++.+ +||.++.+.+..+..|                  ...|++++|+|+|++||+|+.||+|+|||++++
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            788999999999 9999998888877765                  467999999999999999999999999999998


Q ss_pred             EEEEe
Q 026765          224 LCVRT  228 (233)
Q Consensus       224 ~~i~~  228 (233)
                      ++++.
T Consensus       244 ~~~~~  248 (902)
T 2oaj_A          244 HMIMA  248 (902)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            88753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.7e-33  Score=219.13  Aligned_cols=211  Identities=13%  Similarity=0.190  Sum_probs=180.6

Q ss_pred             ceeeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEec-ccCCCCceeeEEEec--CcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHI-EPHGHGKVKDIELRG--HADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~-~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      .+.+.+|...|++++|+|+++ +|++|+.|+.|++|++ ....     ...+.+  |...|.+++|+|  +.++++++.|
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d  121 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS-----FQALTNNEANLGICRICKYG--DDKLIAASWD  121 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-----EEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-----eEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence            345568999999999999999 9999999999999998 6432     245678  999999999999  5688999999


Q ss_pred             CeEEEEECCC---------CeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-Ceee---eeeecCceeeEE
Q 026765           89 KTVRLWDARS---------GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FKPI---HRRKFGYEVNEI  155 (233)
Q Consensus        89 ~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~~~~~  155 (233)
                      +.|++||+++         +++...+.....+.+++|+|++  +++++.++.+.+||+++ ....   ....+...+.++
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence            9999999987         6655555566677889999887  89999999999999987 4322   222345679999


Q ss_pred             EECC-CCCEEEEEeCCCeEEEEecCCc------eeeeEEeeecC---------ceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          156 AWNM-TGEMFFLTTGNGTVEVLTYPSL------RPLDTVVAHTA---------GCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~---------~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +|+| +++++++++.+|.+++|+++..      +....+..|..         .|.+++|+|++++|++|+.||.|++||
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            9999 9999999999999999999776      67777888865         899999999999999999999999999


Q ss_pred             cCCcEEEEeeecC
Q 026765          220 ISEMLCVRTFTKL  232 (233)
Q Consensus       220 ~~~~~~i~~~~~~  232 (233)
                      +.++++++++..+
T Consensus       280 ~~~~~~~~~~~~~  292 (342)
T 1yfq_A          280 LQTRKKIKNFAKF  292 (342)
T ss_dssp             TTTTEEEEECCCC
T ss_pred             CccHhHhhhhhcc
Confidence            9999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-32  Score=218.99  Aligned_cols=210  Identities=15%  Similarity=0.176  Sum_probs=177.9

Q ss_pred             ceeeeCc-----cccEEEEEEC----cCCCE-EEEEeCCCCEEEEeccc------CCCCce-eeEEE-------ecCcCc
Q 026765           13 SREYTGH-----KKKVHSVAWN----CTGTK-LASGSVDQTARVWHIEP------HGHGKV-KDIEL-------RGHADS   68 (233)
Q Consensus        13 ~~~~~~H-----~~~V~~~~~~----~~~~~-l~s~~~D~~v~vW~~~~------~~~~~~-~~~~~-------~~h~~~   68 (233)
                      ...+.+|     ...|++++|+    |++++ |++++.|+.|++||+..      ...... ....+       ..|...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            4567788     6999999999    99999 99999999999999975      222110 11134       448899


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee-------cCCeeEEEECCCCCeEEEEcCC---CcEEEEEcC
Q 026765           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-------SGENINITYKPDGTHIAVGNRD---DELTILDVR  138 (233)
Q Consensus        69 v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~  138 (233)
                      |.+++|+|++  ++++|+.|+.|++||+++++....+..       ...+.+++|+|++++|++++.|   +.|.+||++
T Consensus       189 i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~  266 (397)
T 1sq9_A          189 ATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  266 (397)
T ss_dssp             CCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            9999999986  889999999999999999888777765       5667889999999999999999   999999999


Q ss_pred             CCeeeeeee--------------cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe------ee--------
Q 026765          139 KFKPIHRRK--------------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV------AH--------  190 (233)
Q Consensus       139 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~--------  190 (233)
                      +.+.+....              +...+.+++|+|+++++++++.|+.+++|+..+.+.+..+.      +|        
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~  346 (397)
T 1sq9_A          267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD  346 (397)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred             CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence            887766554              45679999999999999999999999999999999999998      78        


Q ss_pred             -------cCceeEEEECCCC----------CEEEEeeCCCcEEEEecCCcE
Q 026765          191 -------TAGCYCIAIDPMG----------RYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       191 -------~~~v~~i~~~p~~----------~~las~s~dg~v~iwd~~~~~  224 (233)
                             ...|.+++|+|++          ++|++|+.||.|+|||+++++
T Consensus       347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                   8999999999998          799999999999999998763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-32  Score=236.81  Aligned_cols=207  Identities=22%  Similarity=0.345  Sum_probs=170.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeE--EEecCcCcEEEEEEcCCCC-CEEEEEeCC
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI--ELRGHADSVDQLCWDPKHA-DLIATASGD   88 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~~l~sg~~d   88 (233)
                      ..+.+.+|.+.|++++|+|++++|+||+.|++|++||....   .....  ...+|...|.+++|+|++. ..+++|+.|
T Consensus       464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d  540 (694)
T 3dm0_A          464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD  540 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC---cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence            34678899999999999999999999999999999997431   11111  1246889999999999753 578999999


Q ss_pred             CeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765           89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +.|++||++++++...+..+ +.+.+++|+|+++++++++.|+.|++||+++.+.+........+.+++|+|++.+++++
T Consensus       541 ~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  620 (694)
T 3dm0_A          541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA  620 (694)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred             CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence            99999999988877666543 56778999999999999999999999999998888777667789999999998877766


Q ss_pred             eCCCeEEEEecCCceeeeEEeeec-------------------CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHT-------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~-------------------~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      . ++.+++||.++.+.+..+..+.                   ..+.+++|+|+|++|++|+.||.|+|||+..
T Consensus       621 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          621 T-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             E-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             c-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            5 5569999999887776654321                   1367899999999999999999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-32  Score=213.22  Aligned_cols=216  Identities=17%  Similarity=0.290  Sum_probs=179.8

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC---------------------------------Ccee
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------------------------------GKVK   58 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~---------------------------------~~~~   58 (233)
                      ....+.+|.+.|++++|+|++++|++++.|++|++||+.....                                 +.+.
T Consensus        66 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~  145 (369)
T 3zwl_B           66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN  145 (369)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred             hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence            3467889999999999999999999999999999999754210                                 0000


Q ss_pred             eE--------------------EEecCcC--cEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-Ceeeeeeee-cCCeeEE
Q 026765           59 DI--------------------ELRGHAD--SVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAEL-SGENINI  114 (233)
Q Consensus        59 ~~--------------------~~~~h~~--~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~-~~~~~~~  114 (233)
                      ..                    .+..|..  .+.+++|+|++ .+|++|+.|+.|++||+++ .+....+.. ...+.++
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  224 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM  224 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence            00                    1112222  78888888864 5778899999999999988 565555543 4567789


Q ss_pred             EECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC--------------eEEEEecCC
Q 026765          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG--------------TVEVLTYPS  180 (233)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~v~~~~~~~  180 (233)
                      +|+|++.+|++++.|+.+.+||+++.+..........+..+.|+|+++++++++.++              .+++|+..+
T Consensus       225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  304 (369)
T 3zwl_B          225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF  304 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred             EECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence            999999999999999999999999988888777778899999999999999999888              899999999


Q ss_pred             ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       181 ~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      .+.+..+.+|...|.+++|+|++++|++|+.||.|+|||++.+.....
T Consensus       305 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          305 EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence            999999999999999999999999999999999999999987654433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-32  Score=215.20  Aligned_cols=209  Identities=20%  Similarity=0.258  Sum_probs=170.1

Q ss_pred             ceeeeCccccEEEEEECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~   89 (233)
                      ...+.+|.+.|++++|+|+  +++|++|+.|++|++||+....  ......+.+|...|.+++|+|+. +.+|++++.|+
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence            3567899999999999987  9999999999999999987522  12334567899999999999973 46889999999


Q ss_pred             eEEEEECCCCeeeee--e-eecCCeeEEEECC-------------CCCeEEEEcCCCcEEEEEcCCCeee----eeee-c
Q 026765           90 TVRLWDARSGKCSQQ--A-ELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFKPI----HRRK-F  148 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~-~  148 (233)
                      .|++||++.+.....  . .....+.+++|+|             ++.++++++.|+.|++||++.....    .... +
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence            999999988743222  2 2345667899999             6999999999999999999765422    2222 3


Q ss_pred             CceeeEEEECCC---CCEEEEEeCCCeEEEEecCCce-----eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          149 GYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLR-----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       149 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      ...+.+++|+|+   ++++++++.||.+++|+.+..+     .......|...|.+++|+|++++|++++.||.|+|||+
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            567999999999   8999999999999999998753     22223348889999999999999999999999999999


Q ss_pred             CCc
Q 026765          221 SEM  223 (233)
Q Consensus       221 ~~~  223 (233)
                      ...
T Consensus       286 ~~~  288 (379)
T 3jrp_A          286 NLE  288 (379)
T ss_dssp             EET
T ss_pred             CCC
Confidence            854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-33  Score=223.40  Aligned_cols=204  Identities=18%  Similarity=0.269  Sum_probs=170.2

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|.+.|++++|+|++++|++|+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~  206 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS----NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIR  206 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEE
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEE
Confidence            34567999999999999999999999999999999997532    223577999999999999975 6788999999999


Q ss_pred             EEECCCCeeeeeeeec-------------------------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee
Q 026765           93 LWDARSGKCSQQAELS-------------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK  147 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  147 (233)
                      +||+++++....+...                         ..+.+++|+|+++++++++.|+.+++||+++.+......
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            9999998877665431                         222335668999999999999999999999887665554


Q ss_pred             --cCceeeEEEECCCCC-EEEEEeCCCeEEEEecCCce-eeeEEee-ecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          148 --FGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLR-PLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       148 --~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                        +...+.+++|+|+++ ++++++.||.+++||.++.+ ++..+.. |...|.++.+ |++++|++++.|+.|++||+..
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence              345799999999999 99999999999999998764 4677777 5667777755 5788999999999999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.9e-32  Score=220.88  Aligned_cols=212  Identities=20%  Similarity=0.278  Sum_probs=175.5

Q ss_pred             ceeeeCccccE-EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V-~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..++.+|.+.| +++.|  ++++|+||+.|++|++||+...    .....+.+|...|.+++|+|++  ++++|+.|+.|
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i  185 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCE
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCE
Confidence            45788998885 66666  5789999999999999998642    2344678999999999999864  88999999999


Q ss_pred             EEEECCCCeeeeeeee-cCCeeEEEEC--CCCCeEEEEcCCCcEEEEEcCCCeeeee----------------------e
Q 026765           92 RLWDARSGKCSQQAEL-SGENINITYK--PDGTHIAVGNRDDELTILDVRKFKPIHR----------------------R  146 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------~  146 (233)
                      ++||++++++...+.. ...+.+++++  +++.++++++.|+.+++||+++......                      .
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            9999999988777663 3556677776  6788999999999999999986543211                      1


Q ss_pred             ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                      ..++......++++++++++++.|+.+++||..+.+.+..+.+|...|.+++|+|++++|++|+.||.|++||+.+++++
T Consensus       266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            11122223344678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecC
Q 026765          227 RTFTKL  232 (233)
Q Consensus       227 ~~~~~~  232 (233)
                      +++..+
T Consensus       346 ~~~~~h  351 (464)
T 3v7d_B          346 YTLQGH  351 (464)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-31  Score=216.60  Aligned_cols=213  Identities=20%  Similarity=0.343  Sum_probs=174.4

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+.+.+|.+.|++++|  +++.|++|+.|+.|++||+....   .....+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus       168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v  241 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVV  241 (401)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc---ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeE
Confidence            34677899999999999  56899999999999999987422   2334678899999999999964 688999999999


Q ss_pred             EEEECCCCeeeeeee-ecCCeeEEEECCCCCeE-EEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHI-AVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l-~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      ++||+++++....+. ....+.+++|+|++..+ ++++  .|+.+++||+++.+.+........+.+++|+++++.++++
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEE
Confidence            999999887766654 34566789999977554 5544  6999999999998888887777889999999999999995


Q ss_pred             e--CCCeEEEEecCCceee--eEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          168 T--GNGTVEVLTYPSLRPL--DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       168 ~--~~~~v~~~~~~~~~~~--~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +  .+|.+++|+..+.+..  ..+.+|...|.+++|+|++++|++++.||.|++||+.++++++...
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             eecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            4  7999999999885443  4467899999999999999999999999999999999998876643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.8e-33  Score=221.13  Aligned_cols=201  Identities=15%  Similarity=0.259  Sum_probs=170.4

Q ss_pred             ccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           19 HKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        19 H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      |.+.|++++|+|+    +.+|++|+.|+.|++||+....    ....+.+|...|.+++|+|.++.+|++|+.|+.|++|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            6788999999999    6799999999999999986422    2345778999999999999556889999999999999


Q ss_pred             ECCCCeeeeee----eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----------------------
Q 026765           95 DARSGKCSQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----------------------  147 (233)
Q Consensus        95 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------------------  147 (233)
                      |+++++....+    .....+.+++|+|+++++++++.|+.+++||+++.+......                       
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            99998877665    244667889999999999999999999999998654332211                       


Q ss_pred             ------cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCce--------------eeeEEeeecCceeEEEECCC--CCE
Q 026765          148 ------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--------------PLDTVVAHTAGCYCIAIDPM--GRY  205 (233)
Q Consensus       148 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~v~~i~~~p~--~~~  205 (233)
                            +...+.++.|+  ++++++++.++.+++|+..+.+              .+..+..|...|.+++|+|+  +++
T Consensus       224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred             cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence                  44568889998  7899999999999999987653              36777889999999999999  999


Q ss_pred             EEEeeCCCcEEEEecCCcEE
Q 026765          206 FAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       206 las~s~dg~v~iwd~~~~~~  225 (233)
                      |++|+.||.|++||+..+++
T Consensus       302 l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSG
T ss_pred             EEEEecCCcEEEEECCCCCC
Confidence            99999999999999998753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-33  Score=222.69  Aligned_cols=207  Identities=18%  Similarity=0.255  Sum_probs=163.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ....+.+|.+.|++++|+|++++|++|+.|++|++||+.... .......+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  124 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVI  124 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCE
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeE
Confidence            345678999999999999999999999999999999987533 112234567899999999999975 567899999999


Q ss_pred             EEEECCCCee---eeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC------------------Ceeeeeeec
Q 026765           92 RLWDARSGKC---SQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRK------------------FKPIHRRKF  148 (233)
Q Consensus        92 ~iwd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~  148 (233)
                      ++||++.++.   ...+.  ....+.+++|+|+++++++++.|+.+++||++.                  .+.+....+
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS  204 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccC
Confidence            9999988762   34443  345678899999999999999999999999852                  222222334


Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCcee----eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ...+.+++|+|+++++++++.|+.+++||..+.+.    +..+.+|...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus       205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            45699999999999999999999999999988776    78888999999999999999999999877766 66654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.6e-32  Score=214.40  Aligned_cols=211  Identities=13%  Similarity=0.237  Sum_probs=171.0

Q ss_pred             cceeeeCccccEEEEE------ECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC----cEEEEE----EcCC
Q 026765           12 HSREYTGHKKKVHSVA------WNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD----SVDQLC----WDPK   77 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~------~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~----~v~~~~----~~~~   77 (233)
                      ....+.+|.+.|++++      |+|++++|++|+.|++|++||+..... .  ...+..|..    .+.+++    |+|+
T Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-P--VANMEPVQGENKRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-C--SEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred             cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-c--ceeccccCCCCCCceEEEEEEeccCCC
Confidence            4567889999999995      578999999999999999999875321 1  123444433    788888    6666


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECC---CCCeEEEEcCCCcEEEEEcCCCeeeeee------ec
Q 026765           78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP---DGTHIAVGNRDDELTILDVRKFKPIHRR------KF  148 (233)
Q Consensus        78 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~  148 (233)
                       +.++++|+.|+.|++||+++++..........+.+++|+|   ++.++++++.|+.+.+||+++.+.....      .+
T Consensus       180 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          180 -ERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             -CCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence             4688999999999999999998766666677788999999   9999999999999999999876544332      34


Q ss_pred             CceeeEEEECCCCC-EEEEEeCCCeEEEEecCCc-------------------eeeeEEeeecCceeEEEECCCCCEEE-
Q 026765          149 GYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSL-------------------RPLDTVVAHTAGCYCIAIDPMGRYFA-  207 (233)
Q Consensus       149 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-------------------~~~~~~~~~~~~v~~i~~~p~~~~la-  207 (233)
                      ...+.+++|+|+++ ++++++.||.+++|+.+..                   +.+..+.+|...|.+++|+|++++|+ 
T Consensus       259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEE
Confidence            56799999999998 7999999999999998643                   45667888999999999999999998 


Q ss_pred             EeeCCCcEEEEecCCcEEE
Q 026765          208 VGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       208 s~s~dg~v~iwd~~~~~~i  226 (233)
                      +|+.||.|+|||+.+.+.|
T Consensus       339 s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          339 CSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             EEETTSEEEEEEECC----
T ss_pred             EecCCCcEEEEECCCcccC
Confidence            8999999999999887543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-32  Score=220.96  Aligned_cols=210  Identities=14%  Similarity=0.236  Sum_probs=173.2

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      +..| ..+....|+|++++|++|+.|+.|++||+...    .....+.+|...|.+++|+|++ .+|++|+.|+.|++||
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWS  167 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEe
Confidence            3444 45566688999999999999999999998632    1223456899999999999975 5889999999999999


Q ss_pred             CCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-------------------------C
Q 026765           96 ARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-------------------------G  149 (233)
Q Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------~  149 (233)
                      +++++....+.. ...+.+++|+|+++++++++.|+.+++||+++.+.+.....                         .
T Consensus       168 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  247 (420)
T 3vl1_A          168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST  247 (420)
T ss_dssp             TTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred             CCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence            998887776653 45677899999999999999999999999998877665542                         1


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcEE-E
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC-V  226 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~-i  226 (233)
                      ..+..++|+|+++++++++.+|.+++||.++.+....+. .|...|.+++|+|+++ +|++|+.||.|++||+.++.+ +
T Consensus       248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  327 (420)
T 3vl1_A          248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV  327 (420)
T ss_dssp             CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence            234456678999999999999999999999887776665 4788999999999999 999999999999999988643 5


Q ss_pred             Eeeec
Q 026765          227 RTFTK  231 (233)
Q Consensus       227 ~~~~~  231 (233)
                      .++..
T Consensus       328 ~~~~~  332 (420)
T 3vl1_A          328 GEFLI  332 (420)
T ss_dssp             EEEEE
T ss_pred             hhhhc
Confidence            55543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-31  Score=233.35  Aligned_cols=216  Identities=16%  Similarity=0.211  Sum_probs=186.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+.+.+|.+.|++++|+|++++|++|+.||+|+|||+...    .....+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i   79 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRI   79 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeE
Confidence            34688999999999999999999999999999999998642    1334677899999999999985 678899999999


Q ss_pred             EEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-eeeeeee-cCceeeEEEECC-CCCEEEEE
Q 026765           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNM-TGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~  167 (233)
                      ++||+.+++....+.. ...+.+++|+|++.++++++.|+.+.+||+.+. ....... +...+.+++|+| +++.++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            9999999988776663 456778999999999999999999999999875 3333332 456799999999 88999999


Q ss_pred             eCCCeEEEEecCCceeeeEEeeec-CceeEEEECC--CCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p--~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.||.+++|+....+....+..+. ..+.+++|+|  ++++|++|+.||.|++||+.++.+++++..+
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  227 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            999999999998877777776655 8899999999  9999999999999999999999999888754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=234.87  Aligned_cols=209  Identities=20%  Similarity=0.317  Sum_probs=171.6

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i   91 (233)
                      ...+.+|.+.|++++|+|++++|++|+.||+|+||++....  ......+.+|..+|.+++|+|+. +.+|++|+.||.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            35678999999999999999999999999999999986321  22334678999999999998762 5688999999999


Q ss_pred             EEEECCCCe--eeeeee-ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCeee---eeeecCceeeEEEECC----
Q 026765           92 RLWDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAWNM----  159 (233)
Q Consensus        92 ~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~----  159 (233)
                      ++||+.+++  ...... ....+.+++|+|+  +..+++++.|+.+++||++.....   ....+...+.++.|+|    
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            999999886  333333 3456778999999  999999999999999999876322   2223456799999999    


Q ss_pred             ---------CCCEEEEEeCCCeEEEEecCCc----eeeeEEeeecCceeEEEECCC---CCEEEEeeCCCcEEEEecCCc
Q 026765          160 ---------TGEMFFLTTGNGTVEVLTYPSL----RPLDTVVAHTAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       160 ---------~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~i~~~p~---~~~las~s~dg~v~iwd~~~~  223 (233)
                               +++.+++++.||.+++||.+..    .....+.+|...|.+++|+|+   +++|++|+.||.|++||+..+
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                     5899999999999999998765    556677889999999999999   899999999999999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=211.84  Aligned_cols=203  Identities=18%  Similarity=0.334  Sum_probs=169.8

Q ss_pred             eCccccEEEEEECcC---CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE------cCCCCCEEEEEeC
Q 026765           17 TGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW------DPKHADLIATASG   87 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~---~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~~l~sg~~   87 (233)
                      .+|.+.|++++|+|+   +++|++|+.|+.|++|++.....   ....+.+|...|.+++|      +|+ +.+|++|+.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~  137 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM---PVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSR  137 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---CSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEET
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---cEEEEEecccceEEEeeccccccCCC-ccEEEEEeC
Confidence            379999999999998   69999999999999999875321   23357799999999965      555 468899999


Q ss_pred             CCeEEEEECCCCe-eeeeeeec-C----CeeEEE----ECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEE
Q 026765           88 DKTVRLWDARSGK-CSQQAELS-G----ENINIT----YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (233)
Q Consensus        88 d~~i~iwd~~~~~-~~~~~~~~-~----~~~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (233)
                      |+.|++||+++++ ....+... +    ...+++    |+|+++++++++.|+.+++||+++.+......+...+.++.|
T Consensus       138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEF  217 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEc
Confidence            9999999998876 44444321 1    445566    789999999999999999999999887766667788999999


Q ss_pred             CC---CCCEEEEEeCCCeEEEEecCCceeeeEEe-----eecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765          158 NM---TGEMFFLTTGNGTVEVLTYPSLRPLDTVV-----AHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       158 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~  223 (233)
                      +|   +++.+++++.+|.+++||.++.++...+.     +|...|.+++|+|+++ +|++|+.||.|++||+..+
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            99   99999999999999999998776665554     8999999999999998 8999999999999999853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.2e-31  Score=218.41  Aligned_cols=213  Identities=22%  Similarity=0.388  Sum_probs=175.5

Q ss_pred             ccceeeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCC-ce--eeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG-KV--KDIELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .....+.+|.+.|++++|+|++. +|++|+.||+|++|++...... ..  ....+.+|...|.+++|+|.++.+|++++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            34567889999999999999998 9999999999999999753221 11  12356789999999999997788999999


Q ss_pred             CCCeEEEEECCCC---eeeeeee-ecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCC-eeeeeee-cCceeeEEEECC
Q 026765           87 GDKTVRLWDARSG---KCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNM  159 (233)
Q Consensus        87 ~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~  159 (233)
                      .|+.|++||++++   +...... ....+.+++|+|++. .+++|+.|+.|++||++.. .++.... +...+.++.|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            9999999999976   3333333 345677899999987 5889999999999999873 4444443 566899999999


Q ss_pred             CCC-EEEEEeCCCeEEEEecCC--------------ceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765          160 TGE-MFFLTTGNGTVEVLTYPS--------------LRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       160 ~~~-~~~~~~~~~~v~~~~~~~--------------~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~  223 (233)
                      +++ ++++++.|+.+++|++..              .+.+..+.+|...|.+++|+|+++ +|++++.||.|+||++.+.
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            996 588889999999999875              255666778999999999999999 8999999999999999754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=227.91  Aligned_cols=204  Identities=10%  Similarity=0.105  Sum_probs=162.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEE--EEcCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL--CWDPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~sg~~d~~i   91 (233)
                      .++.+|.+.|++++|+++ ..|++|+.||+|++||+.....   ....+.+|...|.++  +|+|++..+|+||+.|++|
T Consensus       260 ~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             EEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             EEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC---ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            478899999999999986 5899999999999999975321   223578999999999  4666544789999999999


Q ss_pred             EEEECCCCeeeeeeeecC---CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEE
Q 026765           92 RLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +|||++++++...+..+.   .+.+++|+|++..+++++.|+.+++||++....... ..+...|.+++|+|++++++++
T Consensus       336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sg  415 (524)
T 2j04_B          336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAG  415 (524)
T ss_dssp             EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEE
T ss_pred             EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEE
Confidence            999999877654443222   356799999999999999999999999988765443 3456689999999999999999


Q ss_pred             eCCCeEEEEecCC--------------------------------------------ceeeeEEeeecCceeEEEECCCC
Q 026765          168 TGNGTVEVLTYPS--------------------------------------------LRPLDTVVAHTAGCYCIAIDPMG  203 (233)
Q Consensus       168 ~~~~~v~~~~~~~--------------------------------------------~~~~~~~~~~~~~v~~i~~~p~~  203 (233)
                      +.|+++++|+...                                            +.....+.+|...|++++|+|++
T Consensus       416 s~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~  495 (524)
T 2j04_B          416 SADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS  495 (524)
T ss_dssp             ETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred             ECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence            9999999887421                                            01122344678889999999996


Q ss_pred             C---EEEEeeCCCcEEEEecC
Q 026765          204 R---YFAVGSADSLVSLWDIS  221 (233)
Q Consensus       204 ~---~las~s~dg~v~iwd~~  221 (233)
                      +   ++|+|+.||+|+||++.
T Consensus       496 ~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          496 AGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             TTTTEEEEECTTSEEEEEECS
T ss_pred             CccHHHHhhccCceEEEEEcc
Confidence            4   99999999999999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-31  Score=214.26  Aligned_cols=206  Identities=12%  Similarity=0.125  Sum_probs=169.7

Q ss_pred             eCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEe---cCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        17 ~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+|.+.|++++|+| ++++|++++.|++|++||+..   ...  ..+.   +|...|.+++|+|++ .+|++|+.|+.|+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~  188 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVI--QVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLL  188 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEE--EEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---Cce--EEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEE
Confidence            47999999999999 789999999999999999873   111  2233   345889999999975 6889999999999


Q ss_pred             EEECCCCeeeeeee-ecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCC----CeeeeeeecCceeeEEEECC-CCCEEE
Q 026765           93 LWDARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRK----FKPIHRRKFGYEVNEIAWNM-TGEMFF  165 (233)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~  165 (233)
                      +||++ ++....+. ....+.+++|+|++. ++++++.|+.+++||+++    ...+....+...+.+++|+| ++++++
T Consensus       189 i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  267 (383)
T 3ei3_B          189 LLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL  267 (383)
T ss_dssp             EEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred             EEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence            99995 44444444 345678899999999 899999999999999987    44555556677899999999 999999


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeec-----------------CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHT-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      +++.|+.+++||.++.+....+.+|.                 ..+..++++|++++  +|+.|+.|+|||+.+++++++
T Consensus       268 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~  345 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ  345 (383)
T ss_dssp             EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred             EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence            99999999999998877777776654                 23445777777777  788999999999999999998


Q ss_pred             eec
Q 026765          229 FTK  231 (233)
Q Consensus       229 ~~~  231 (233)
                      +..
T Consensus       346 l~~  348 (383)
T 3ei3_B          346 LRD  348 (383)
T ss_dssp             ECB
T ss_pred             ecC
Confidence            864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.2e-31  Score=230.65  Aligned_cols=215  Identities=18%  Similarity=0.269  Sum_probs=186.5

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+.+.+|.++|++++|+|++++|++|+.|+.|+||++....    ....+.+|...|.+++|+|++ ..|++|+.|+.|
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i  121 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTV  121 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEE
Confidence            346788999999999999999999999999999999986432    234578899999999999986 578899999999


Q ss_pred             EEEECCCC-eeeeeeee-cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeeec--CceeeEEEECC--CCCEE
Q 026765           92 RLWDARSG-KCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNM--TGEMF  164 (233)
Q Consensus        92 ~iwd~~~~-~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~  164 (233)
                      ++||+.++ .....+.. ...+.+++|+| ++..+++++.|+.+.+||++..+.......  ...+..++|+|  +++++
T Consensus       122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            99999876 44444443 35677899999 888999999999999999987666554443  25789999999  99999


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ++++.+|.+++|+..+.+.+..+.+|...|.+++|+|++++|++|+.||.|++||+.++.+++++..
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  268 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV  268 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence            9999999999999999999999999999999999999999999999999999999999988888764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-31  Score=211.88  Aligned_cols=207  Identities=14%  Similarity=0.232  Sum_probs=174.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ....+.+|.+.|++++|+|++++|++++.|++|++||+....  ......+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v  120 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEE
Confidence            446778999999999999999999999999999999986421  22333456799999999999975 688899999999


Q ss_pred             EEEECCCCee---eeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC------------------CCeeeeee-e
Q 026765           92 RLWDARSGKC---SQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVR------------------KFKPIHRR-K  147 (233)
Q Consensus        92 ~iwd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~-~  147 (233)
                      ++||++.+..   .....  ....+.+++|+|+++++++++.|+.+++||++                  ..+.+... .
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  200 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence            9999987652   22221  24567789999999999999999999999964                  33444443 2


Q ss_pred             cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +...+.+++|+|+++++++++.|+.+++||.++.+.+..+..|...|.+++|+|++++|++| .|+.|++||+..
T Consensus       201 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          201 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            44579999999999999999999999999999999999999999999999999999988888 999999999987

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-31  Score=212.55  Aligned_cols=199  Identities=16%  Similarity=0.255  Sum_probs=171.6

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      |.+.|++++|+|++++|++|+.|+.|++|+...    . ....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~----~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG----A-LLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVIS  180 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS----C-EEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----C-eeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCC
Confidence            788999999999999999999999999999321    1 234577899999999999975 5788999999999999987


Q ss_pred             Ceeeeeee---------------------------------------------------------ecCCeeEEEECCCCC
Q 026765           99 GKCSQQAE---------------------------------------------------------LSGENINITYKPDGT  121 (233)
Q Consensus        99 ~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~~~~  121 (233)
                      ++....+.                                                         ....+.+++|+|+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  260 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK  260 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence            76433221                                                         122345689999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765          122 HIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID  200 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~  200 (233)
                      ++++++.|+.+.+||+++.+...... +...+.++.|++++ .+++++.++.+++|+.++.+.+..+..|...|.+++|+
T Consensus       261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            99999999999999998877666554 55679999999999 99999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcE
Q 026765          201 PMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       201 p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      |++++|++++.||.|+|||+..+.
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999999999999999888

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2e-31  Score=211.90  Aligned_cols=204  Identities=9%  Similarity=0.081  Sum_probs=155.3

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..++.+|.+.|++++|+|+|++|++|+.|+ ++||++++..    .  ....+...+..+++.+.+..++++|+.|+.|+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----H--IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----E--EEEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----e--eeeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            345688999999999999999999998665 7899986421    1  11122235777788877655557888999999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCC-----------------------------------CeEEE--EcCCCcEEEE
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDG-----------------------------------THIAV--GNRDDELTIL  135 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~i~  135 (233)
                      +||+.++++...+.....+.++.++++.                                   .+++.  |+.++.+++|
T Consensus        85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iw  164 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHIT  164 (355)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEE
T ss_pred             EEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEE
Confidence            9999999887776666666666665532                                   23443  5678889999


Q ss_pred             EcCCCe---------------e-eee-eecCceeeEEEECCCCCEEEEEeCCCe-EEEEecCCceeeeEEe-e-ecCcee
Q 026765          136 DVRKFK---------------P-IHR-RKFGYEVNEIAWNMTGEMFFLTTGNGT-VEVLTYPSLRPLDTVV-A-HTAGCY  195 (233)
Q Consensus       136 d~~~~~---------------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~-~-~~~~v~  195 (233)
                      |+.+.+               + +.. ..+...+.+++|+|+++++++++.|++ +++||.++++.+..+. + |...|.
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~  244 (355)
T 3vu4_A          165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVV  244 (355)
T ss_dssp             ECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred             ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence            987644               1 222 234567999999999999999999998 9999999999999988 5 999999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          196 CIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       196 ~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      +++|+|++++|++|+.|++|+|||+...
T Consensus       245 ~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          245 DMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            9999999999999999999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.2e-31  Score=215.18  Aligned_cols=211  Identities=20%  Similarity=0.276  Sum_probs=175.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~   90 (233)
                      ...++.+|.+.|++++|+|++ .|++|+.|++|++||+....    ....+.+|...|.+++|++. ++.++++|+.|+.
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc----EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            346778999999999999988 99999999999999986421    33467889999999999852 3468899999999


Q ss_pred             EEEEECCCCeeeeee---------------------ee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-
Q 026765           91 VRLWDARSGKCSQQA---------------------EL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-  147 (233)
Q Consensus        91 i~iwd~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  147 (233)
                      |++||++++......                     .. .......+++++++++++++.|+.+++||+++.+.+.... 
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  308 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG  308 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            999999876532110                     01 1111223457889999999999999999999888776654 


Q ss_pred             cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      +...+.++.|+++++++++++.||.+++||.++++.+..+.+|...|.+++++  +++|++|+.||.|++||+.++....
T Consensus       309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            45679999999999999999999999999999999999999999999999998  4799999999999999999887665


Q ss_pred             ee
Q 026765          228 TF  229 (233)
Q Consensus       228 ~~  229 (233)
                      .+
T Consensus       387 ~~  388 (464)
T 3v7d_B          387 SY  388 (464)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-31  Score=203.97  Aligned_cols=212  Identities=17%  Similarity=0.206  Sum_probs=175.6

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+..|.+.|++++|+|++++|++|+.|+.|++|++....... ....+.+|...|.+++|+   +.++++|+.|+.|+
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~  127 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-cccchhhcccCEEEEEec---CCEEEEEeCCCCEE
Confidence            35677899999999999999999999999999999986533222 223567899999999994   35889999999999


Q ss_pred             EEECCCCeeeeeeee-cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765           93 LWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +||  .++....... ...+.++.+.| ++.++++++.|+.+.+||...........+...+.+++|+++++ +++++.+
T Consensus       128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred             EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence            999  4444444443 45566788877 89999999999999999944322222222556799999999998 8999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.+++||.++++.+..+.+|...|.+++|+|++ .|++++.||.|++||+.++++++++..+
T Consensus       205 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          205 GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence            999999999999999999999999999999999 6899999999999999999999888654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.2e-31  Score=208.89  Aligned_cols=162  Identities=14%  Similarity=0.190  Sum_probs=131.9

Q ss_pred             CcEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee
Q 026765           67 DSVDQLCWDPKHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (233)
                      ..+..++|+|++..++ ++++.|++|+|||++++++...+...+.+.+++|+|+++++++++.+ .+.+|+..+.+....
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIAR  212 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceee
Confidence            3477899999876543 45668999999999999988888777888999999999999998855 566676665554432


Q ss_pred             e---ecCceeeEEEECCCCCEEEEEeCCC----eEEEEecCCcee----eeEEeeecCceeEEEECCCCCEEEEeeCCCc
Q 026765          146 R---KFGYEVNEIAWNMTGEMFFLTTGNG----TVEVLTYPSLRP----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSL  214 (233)
Q Consensus       146 ~---~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~----~~~~~~~~~~v~~i~~~p~~~~las~s~dg~  214 (233)
                      .   .+...+..++|+|+++.+++++.++    .+..|+......    ...+.+|...|++++|+|+|++||+|+.|++
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence            2   2345789999999999999998776    577788755432    3456788999999999999999999999999


Q ss_pred             EEEEecCCcEEEEee
Q 026765          215 VSLWDISEMLCVRTF  229 (233)
Q Consensus       215 v~iwd~~~~~~i~~~  229 (233)
                      |+|||+.++++++++
T Consensus       293 V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          293 IALVKLKDLSMSKIF  307 (365)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCcEEEEe
Confidence            999999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-30  Score=235.89  Aligned_cols=218  Identities=21%  Similarity=0.296  Sum_probs=185.0

Q ss_pred             CccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        10 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ......+.+|.+.|++++|+|++++|++|+.|++|++||+....    ....+.+|...|.+++|+|++ .+|++|+.|+
T Consensus       605 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~  679 (1249)
T 3sfz_A          605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHEDEVLCCAFSSDD-SYIATCSADK  679 (1249)
T ss_dssp             CCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             ccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----EEEEeccCCCCEEEEEEecCC-CEEEEEeCCC
Confidence            33445678999999999999999999999999999999986532    334678999999999999975 6889999999


Q ss_pred             eEEEEECCCCeeeeeeeec-CCeeEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEE
Q 026765           90 TVRLWDARSGKCSQQAELS-GENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  165 (233)
                      .|++||+.++++...+..+ ..+.+++|+|  ++..+++++.|+.+.+||+++.+...... +...+.+++|+|+++.++
T Consensus       680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence            9999999999887776544 4567899999  55688999999999999999887665543 456799999999999999


Q ss_pred             EEeCCCeEEEEecCCceeeeEE-------------------------------------------------------eee
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTV-------------------------------------------------------VAH  190 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~-------------------------------------------------------~~~  190 (233)
                      +++.||.+++||..+.+....+                                                       .+|
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence            9999999999998655433222                                                       156


Q ss_pred             cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       191 ~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ...|.+++|+|+++++++++.||.|++||+.++.++.++..+
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  881 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH  881 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence            778999999999999999999999999999999999888764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-31  Score=210.04  Aligned_cols=208  Identities=13%  Similarity=0.210  Sum_probs=169.1

Q ss_pred             eeeCccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEcCCCC---CEEEEEe
Q 026765           15 EYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHA---DLIATAS   86 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~---~~l~sg~   86 (233)
                      ...+|.++|++++|+|+    ...+++++.|+.|++|++....... +.......|...|.+++|+|++.   .+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    4567777778899999987432111 11111123668899999999742   4889999


Q ss_pred             CCCeEEEEECCCCeeeeeee-ecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeee----ecCceeeEEEECCC
Q 026765           87 GDKTVRLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMT  160 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~  160 (233)
                      .|+.|++||+.+++....+. ....+.+++|+| ++.++++++.|+.|++||+++.+.....    .+...+.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            99999999999988877766 446678899999 8999999999999999999988877665    35668999999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEe----------------------------eecCceeEEEECCCCCEEEEeeCC
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVV----------------------------AHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------------~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      ++++++++.||.+++||.++.+....+.                            .|...|.+++|+  +++|++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            9999999999999999998765443333                            388999999998  6799999999


Q ss_pred             CcEEEEecCCcE
Q 026765          213 SLVSLWDISEML  224 (233)
Q Consensus       213 g~v~iwd~~~~~  224 (233)
                      +.|++||+.++.
T Consensus       251 ~~i~~wd~~~~~  262 (366)
T 3k26_A          251 NAIVCWKPGKME  262 (366)
T ss_dssp             SEEEEEEESSTT
T ss_pred             CEEEEEeCCCcc
Confidence            999999998763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=217.00  Aligned_cols=212  Identities=13%  Similarity=0.250  Sum_probs=169.3

Q ss_pred             ceeeeCcc------------ccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCC----------------------c
Q 026765           13 SREYTGHK------------KKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHG----------------------K   56 (233)
Q Consensus        13 ~~~~~~H~------------~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~----------------------~   56 (233)
                      ...+.+|.            +.|++++|+|++  .+|++++.|++|++|++......                      .
T Consensus        74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  153 (447)
T 3dw8_B           74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR  153 (447)
T ss_dssp             EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred             ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence            45778998            889999999998  79999999999999998642110                      0


Q ss_pred             --------------eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeee--------eecCCeeE
Q 026765           57 --------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQA--------ELSGENIN  113 (233)
Q Consensus        57 --------------~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~--------~~~~~~~~  113 (233)
                                    .......+|...|.+++|+|++ .+|++| .|+.|++||++.. +.....        .....+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  231 (447)
T 3dw8_B          154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA  231 (447)
T ss_dssp             CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred             eccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence                          0001136799999999999975 678888 8999999999843 333321        22345778


Q ss_pred             EEECCCC-CeEEEEcCCCcEEEEEcCCCee----eeeeecCc-------------eeeEEEECCCCCEEEEEeCCCeEEE
Q 026765          114 ITYKPDG-THIAVGNRDDELTILDVRKFKP----IHRRKFGY-------------EVNEIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus       114 ~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      ++|+|++ .++++++.|+.|++||+++.+.    ........             .+.+++|+|+++++++++. +.+++
T Consensus       232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i  310 (447)
T 3dw8_B          232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV  310 (447)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred             EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence            9999998 9999999999999999988664    33333221             7999999999999999999 99999


Q ss_pred             EecCC-ceeeeEEeeecCc---------------eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          176 LTYPS-LRPLDTVVAHTAG---------------CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       176 ~~~~~-~~~~~~~~~~~~~---------------v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      ||.+. .+++..+.+|...               +..++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus       311 wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          311 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             EeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            99986 8888888888642               2349999999999999999999999999987763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.9e-31  Score=215.28  Aligned_cols=210  Identities=20%  Similarity=0.315  Sum_probs=172.5

Q ss_pred             ceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCC------CceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765           13 SREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      .....+|.+.|++++|+|+ +.+|++++.||.|++|++.....      .......+.+|...|.+++|+|.+..+|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3455689999999999997 68999999999999999975210      0123346789999999999999877689999


Q ss_pred             eCCCeEEEEECCCCee-------eeee-eecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCC---eeeeee-ecCcee
Q 026765           86 SGDKTVRLWDARSGKC-------SQQA-ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKF---KPIHRR-KFGYEV  152 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~-------~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~---~~~~~~-~~~~~~  152 (233)
                      +.||.|++||+..+..       ...+ .....+.+++|+| ++..+++++.|+.|++||++..   +.+... .+...+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987422       1222 2334577899999 6788899999999999999876   344333 355679


Q ss_pred             eEEEECCCCC-EEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCC
Q 026765          153 NEIAWNMTGE-MFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE  222 (233)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~  222 (233)
                      ++++|+|+++ ++++++.+|.+++||++. .+++..+..|...|.+++|+|+++ +|++++.|+.|+|||+..
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            9999999997 588999999999999987 567888889999999999999995 699999999999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-31  Score=210.52  Aligned_cols=211  Identities=12%  Similarity=0.030  Sum_probs=174.1

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCC-EEEEEeCCCeEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD-LIATASGDKTVRLW   94 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~sg~~d~~i~iw   94 (233)
                      ..+|.+.|++++|+|++++|++++.|+.|++|++..... ......+.+|...|.+++|+|+ +. +|++|+.|+.|++|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-cccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEE
Confidence            458999999999999999999999999999999975331 1122345689999999999997 46 78899999999999


Q ss_pred             EC-CCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC---------CeeeeeeecCceeeEEEECCCCC
Q 026765           95 DA-RSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRK---------FKPIHRRKFGYEVNEIAWNMTGE  162 (233)
Q Consensus        95 d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~  162 (233)
                      |+ .+++......  ....+.+++|+| +..+++++.|+.+++||+++         .+.+....+...+.+++|++++ 
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence            99 8776543333  455677899999 99999999999999999987         5555555566789999999877 


Q ss_pred             EEEEEeCCCeEEEEecCC-ce--eeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCc------EEEEeeec
Q 026765          163 MFFLTTGNGTVEVLTYPS-LR--PLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM------LCVRTFTK  231 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~-~~--~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~------~~i~~~~~  231 (233)
                       +++++.++.+++|+.+. ..  .......|...+.+++|+| ++++|++|+.||.|+|||++..      .++.+|..
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence             89999999999999987 43  2233456788999999999 9999999999999999999876      56666654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-32  Score=219.05  Aligned_cols=212  Identities=11%  Similarity=0.111  Sum_probs=171.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce---------eeEEEec--CcCcEEEEE--EcCCCCCEEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---------KDIELRG--HADSVDQLC--WDPKHADLIAT   84 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~---------~~~~~~~--h~~~v~~~~--~~~~~~~~l~s   84 (233)
                      +|.+.|++++|+|++++|++|+.|++|++||++....+..         ..+.+..  +...+.++.  ++++ +.+|++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~  187 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVA  187 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEE
Confidence            5999999999999999999999999999999852111111         1111112  455566666  4454 468899


Q ss_pred             EeCCCeEEEEECCCCeeeeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEEC-
Q 026765           85 ASGDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWN-  158 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~-  158 (233)
                      |+.|+.|++||++++++...+..   ...+.+++|+|+++++++|+.|+.|++||++..+.+....  ....+.++.|+ 
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            99999999999999988777664   4677889999999999999999999999999988877654  34578899655 


Q ss_pred             ---CCCCEEEEEeCCCeEEEEecCCceeeeEEee--------------------------ecCceeEEEECCCCCEEEEe
Q 026765          159 ---MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--------------------------HTAGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       159 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------------~~~~v~~i~~~p~~~~las~  209 (233)
                         ++++++++++.|+.+++||.++++.+..+.+                          |...|.+++|+ ++++|++|
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~  346 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD  346 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence               5678999999999999999998887777664                          44558888998 67899999


Q ss_pred             eCCCcEEEEecCCcEEEEeeec
Q 026765          210 SADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       210 s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.||.|++||+.++++++++..
T Consensus       347 ~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          347 EATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             GGGTEEEEEETTCGGGCEEEEC
T ss_pred             CCCCeEEEEECCCcccceEEec
Confidence            9999999999999988887765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.8e-32  Score=208.58  Aligned_cols=200  Identities=9%  Similarity=0.087  Sum_probs=147.6

Q ss_pred             ccccEEEEEECcC----CCEEEEEeC--------------------CCCEEEEecccCCCCceeeEEEecCcCcEEEEEE
Q 026765           19 HKKKVHSVAWNCT----GTKLASGSV--------------------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW   74 (233)
Q Consensus        19 H~~~V~~~~~~~~----~~~l~s~~~--------------------D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~   74 (233)
                      |.+.|++++|+|+    +..+++++.                    |+.|++|++.+.+  + ....+.+|...++.++|
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~-~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--G-GKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--C-EEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--c-eeeeeccCCCceeeEEe
Confidence            4557888888888    777777553                    8999999986532  2 22345678888888888


Q ss_pred             cC--CCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC----CeeEEEECCCCCeE------------EEEcCCCcEEEEE
Q 026765           75 DP--KHADLIATASGDKTVRLWDARSGKCSQQAELSG----ENINITYKPDGTHI------------AVGNRDDELTILD  136 (233)
Q Consensus        75 ~~--~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~l------------~~~~~d~~i~i~d  136 (233)
                      +|  .++.+|+||+.|++|+|||+.++++...+..+.    .+..++|+|++.++            ++|+.|+++++||
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            87  235789999999999999999999888775322    23457899999876            5677899999999


Q ss_pred             cCCCeeeeeee----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCcee-EEEECCCCCEEEEeeC
Q 026765          137 VRKFKPIHRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPMGRYFAVGSA  211 (233)
Q Consensus       137 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~las~s~  211 (233)
                      ..+.+.+....    .++....+..+.++..+++++.|++|++||+.+++.+.++.+|...+. +++|+|+|++|++|+.
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            98887654332    122212233333467889999999999999999999999999987765 5899999999999999


Q ss_pred             CCcEEEEecC
Q 026765          212 DSLVSLWDIS  221 (233)
Q Consensus       212 dg~v~iwd~~  221 (233)
                      |++|+|||+.
T Consensus       347 D~TIklWd~~  356 (356)
T 2w18_A          347 DGNIFVYHYS  356 (356)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEecCC
Confidence            9999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-30  Score=208.75  Aligned_cols=213  Identities=17%  Similarity=0.230  Sum_probs=172.3

Q ss_pred             eCccccEEEEEECcCCC-EEEEEeCCCCEEEEec----ccCCCCc-e-eeEEEec----------CcCcEEEEEEcCCCC
Q 026765           17 TGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHI----EPHGHGK-V-KDIELRG----------HADSVDQLCWDPKHA   79 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~----~~~~~~~-~-~~~~~~~----------h~~~v~~~~~~~~~~   79 (233)
                      ..|.+.|++++|+|+++ +||+|+.|+.|++|++    ....... . ....+..          |...|.+++|+|++ 
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-  120 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-  120 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-
Confidence            34669999999999999 9999999999999999    5422100 0 1112222          67899999999975 


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----------
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----------  147 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------  147 (233)
                      .+|++|+.|+.|++|| .+++....+. ....+.+++|+|+++++++++.|+.+.+||+.+.+.+....           
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            6889999999999999 4555555544 34567789999999999999999999999987655432211           


Q ss_pred             ----------------------------------------------cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc
Q 026765          148 ----------------------------------------------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL  181 (233)
Q Consensus       148 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  181 (233)
                                                                    +...+.+++|+++++++++++.++.+++|+.++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                                                          1235788999999999999999999999999998


Q ss_pred             eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +....+..|...|.+++|+|++ +|++++.|+.|++||+.+++++..+..+
T Consensus       280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~  329 (425)
T 1r5m_A          280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD  329 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred             ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence            8888898999999999999999 9999999999999999999998887653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.7e-32  Score=217.87  Aligned_cols=201  Identities=11%  Similarity=0.109  Sum_probs=148.3

Q ss_pred             eeeCccccEEEEEECc--------CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           15 EYTGHKKKVHSVAWNC--------TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~--------~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .+.||.+.|++|+|+|        ++++|||||.|++|||||+....    ....+.+|...|.+++|+|+++.+|++|+
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG----PILAGYPLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE----EEEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc----eeeeecCCCCCcEEEEECCCCCceEEecC
Confidence            4679999999999998        78999999999999999986422    33456688999999999998877899999


Q ss_pred             CCCeEEEEECCCCeeeeeee--------------------------ecCCeeEEEE-CCCCCeEEEEcCCCcEEEEEcCC
Q 026765           87 GDKTVRLWDARSGKCSQQAE--------------------------LSGENINITY-KPDGTHIAVGNRDDELTILDVRK  139 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~--------------------------~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~  139 (233)
                      .|++|++||+++++......                          ....+.++.| .|+++.+++++.|+.+++||+..
T Consensus       207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred             CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence            99999999998775432211                          1122345666 48999999999999999999875


Q ss_pred             Ceeeeeeec-C-------------------ceeeEEEECCCCC-EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEE
Q 026765          140 FKPIHRRKF-G-------------------YEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA  198 (233)
Q Consensus       140 ~~~~~~~~~-~-------------------~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~  198 (233)
                      .+....... .                   ..+..+.+.+.++ ++++++.||.|++||..+++....+..|...|.+++
T Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva  366 (393)
T 4gq1_A          287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC  366 (393)
T ss_dssp             -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE
Confidence            443222110 0                   0111222333334 456677899999999999888888889999999999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEec
Q 026765          199 IDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       199 ~~p~~~~las~s~dg~v~iwd~  220 (233)
                      |+|+|++||+++.|| +.+|.+
T Consensus       367 fspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          367 WHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ECTTSSEEEEEESSE-EEEEEE
T ss_pred             EcCCCCEEEEEeCCC-eEEEEE
Confidence            999999999999877 555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-30  Score=201.43  Aligned_cols=203  Identities=20%  Similarity=0.224  Sum_probs=172.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|...|++++|  +++++++++.|+.|++||..      .....+..|...+.+++|.|.++.++++++.|+.|+
T Consensus        97 ~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  168 (313)
T 3odt_A           97 LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK  168 (313)
T ss_dssp             -CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence            4577899999999999  68899999999999999921      133467789999999999985567899999999999


Q ss_pred             EEECCCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765           93 LWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        93 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      +||..  +....+.  ....+.+++|+|++. +++++.|+.+.+||+++.+.+.... +...+.+++|+|++ .+++++.
T Consensus       169 i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~  244 (313)
T 3odt_A          169 LWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE  244 (313)
T ss_dssp             EEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence            99943  3333333  345667899999988 8999999999999999888776655 56679999999999 6889999


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      ||.+++||.++++....+..|...|.+++|+|+++ +++++.||.|++||+++++.+.+
T Consensus       245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          245 DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            99999999999999999999999999999999998 66799999999999998766544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.5e-30  Score=206.26  Aligned_cols=208  Identities=19%  Similarity=0.270  Sum_probs=165.7

Q ss_pred             CccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC--CEEEEEeCCCeEEEE
Q 026765           18 GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRLW   94 (233)
Q Consensus        18 ~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~sg~~d~~i~iw   94 (233)
                      +|.+.|++++|+| ++.+|++++.|+.|++||+....    . .....+...+.++.+.|.+.  .++++|+.|+.|++|
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ----T-ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE----E-EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc----c-ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            6999999999999 77899999999999999986421    1 12234778899999988643  388999999999999


Q ss_pred             ECCCCeeeeeeee-cCCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCee-eee----------------eecCceeeEE
Q 026765           95 DARSGKCSQQAEL-SGENINITYKPDGTH-IAVGNRDDELTILDVRKFKP-IHR----------------RKFGYEVNEI  155 (233)
Q Consensus        95 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~-~~~----------------~~~~~~~~~~  155 (233)
                      |+++++....+.. ...+.+++|+|++.+ +++++.|+.+++||++.... ...                ..+...+.++
T Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            9998877666653 456778999999985 88999999999999976541 111                1234568999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCc-----------------------------------------------eeeeEEe
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSL-----------------------------------------------RPLDTVV  188 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------------------------~~~~~~~  188 (233)
                      +|+|+++++++++.|+.+++|+..++                                               +.+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            99999999999999999999997643                                               3345567


Q ss_pred             eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +|...|.+++|+|++++|++|+.||.|++||+.+.+++....
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            799999999999999999999999999999999988776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.4e-30  Score=205.25  Aligned_cols=203  Identities=20%  Similarity=0.320  Sum_probs=169.0

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .|.+.|++++|+|++++|++|+.||.|++||+....    ....+.+|...|.+++|++   .++++|+.|+.|++||++
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecc
Confidence            389999999999999999999999999999986432    2345779999999999953   588999999999999998


Q ss_pred             C-Ceeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE-e--CCC
Q 026765           98 S-GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT-T--GNG  171 (233)
Q Consensus        98 ~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--~~~  171 (233)
                      . +.....+. ....+.+++|+|++.++++++.|+.+++||+++.+...... +...+.+++|+|++..+++. +  .|+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~  284 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK  284 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence            4 34444443 34567789999999999999999999999999877765543 55679999999987655554 3  599


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE--eeCCCcEEEEecCCcEEEEe
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las--~s~dg~v~iwd~~~~~~i~~  228 (233)
                      .+++||..+++.+..+. +...|.+++|+|++++|++  |+.||.|+|||+.++.....
T Consensus       285 ~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          285 QIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence            99999999988887775 6778999999999999998  55899999999998665544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-29  Score=207.95  Aligned_cols=213  Identities=11%  Similarity=0.062  Sum_probs=172.9

Q ss_pred             eeCccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ..+|.+.|++++|+|++++| ++|+.|++|+||++..........+....|...|.+++|+|++ .+|++|+.|+.+++|
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSI  176 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEE
Confidence            34788899999999999996 9999999999999973122233333334678899999999975 678899999999999


Q ss_pred             ECCCCeeee----eee-ecCCeeEEEECCC---CCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEECCCCCEE
Q 026765           95 DARSGKCSQ----QAE-LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        95 d~~~~~~~~----~~~-~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  164 (233)
                      ++.++....    .+. ....+.+++|+|+   +++|++++.|+.|++||+++.+.+....  +...+.+++|+ +++++
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence            998776442    333 3456778999999   9999999999999999998877665533  45679999999 99999


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeee-------------------------cCceeEEEECCCCCEEEEee-CCCcEEEE
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAH-------------------------TAGCYCIAIDPMGRYFAVGS-ADSLVSLW  218 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------~~~v~~i~~~p~~~~las~s-~dg~v~iw  218 (233)
                      ++++.|+.+++||+.+++.+..+..+                         ...|.+++|+|++++|++++ .|+.|+||
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL  335 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            99999999999999998887777532                         34688999999999999999 89999999


Q ss_pred             ec--CCc---EEEEeee
Q 026765          219 DI--SEM---LCVRTFT  230 (233)
Q Consensus       219 d~--~~~---~~i~~~~  230 (233)
                      |+  .++   .+++++.
T Consensus       336 ~~~~~~~~~l~~~~~~~  352 (450)
T 2vdu_B          336 EMSEKQKGDLALKQIIT  352 (450)
T ss_dssp             EECSSSTTCEEEEEEEE
T ss_pred             EeccCCCCceeeccEec
Confidence            99  555   6666664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.2e-30  Score=224.25  Aligned_cols=209  Identities=20%  Similarity=0.247  Sum_probs=171.2

Q ss_pred             ceeeeCccccEEEEEECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCC
Q 026765           13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~   89 (233)
                      ...+.+|.++|++++|+|+  +++|+||+.||+|++||+....  ......+.+|...|.+++|+|+. +.++++|+.|+
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            4567899999999999988  9999999999999999987521  12334567899999999999973 46889999999


Q ss_pred             eEEEEECCCCeeeee--e-eecCCeeEEEECC-------------CCCeEEEEcCCCcEEEEEcCCCe----eeeee-ec
Q 026765           90 TVRLWDARSGKCSQQ--A-ELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFK----PIHRR-KF  148 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~-~~  148 (233)
                      .|++||++++.....  . .....+.+++|+|             ++..+++|+.|+.|++||+++..    ..... .+
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            999999988743222  2 2345677899999             58999999999999999998753    22222 24


Q ss_pred             CceeeEEEECCC---CCEEEEEeCCCeEEEEecCCce-----eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          149 GYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLR-----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       149 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      ...+.+++|+|+   ++++++++.||.+++|+..+.+     .......|...|++++|+|++++|++|+.||.|+|||+
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            567999999999   8999999999999999998753     33334458889999999999999999999999999999


Q ss_pred             CCc
Q 026765          221 SEM  223 (233)
Q Consensus       221 ~~~  223 (233)
                      ..+
T Consensus       284 ~~~  286 (753)
T 3jro_A          284 NLE  286 (753)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=4.1e-30  Score=203.67  Aligned_cols=201  Identities=21%  Similarity=0.308  Sum_probs=161.5

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE--cCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW--DPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~sg~~d~~i   91 (233)
                      ..+.+|.+.|++++|+|++++|++|+.|++|++||+...     ....+.+|...|.+++|  +|++ .+|++|+.|+.|
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i  153 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-----QAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTL  153 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----EEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC-----CceeeccccCceEEEEEEeCCCC-CEEEEccCCCcE
Confidence            678899999999999999999999999999999998642     12346679999999999  7764 578899999999


Q ss_pred             EEEECCCCeeeeeeeecCC------------------------------------------eeEEEECCCCCe----EEE
Q 026765           92 RLWDARSGKCSQQAELSGE------------------------------------------NINITYKPDGTH----IAV  125 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~----l~~  125 (233)
                      ++||+++++....+..+..                                          ...+.+.++...    +++
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            9999988765544432221                                          122333333333    899


Q ss_pred             EcCCCcEEEEEcCCCe---eeeeeecCc-------------eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765          126 GNRDDELTILDVRKFK---PIHRRKFGY-------------EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       126 ~~~d~~i~i~d~~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  189 (233)
                      ++.|+.+.+||++...   .........             .+.+++|+|+++++++++.||.+++||..+++.+..+..
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence            9999999999998753   222222211             589999999999999999999999999999999999999


Q ss_pred             ecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       190 ~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      |...|.+++|+|++++|++|+.|+..+.|++
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccc
Confidence            9999999999999999999999986555554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=2.6e-29  Score=211.95  Aligned_cols=217  Identities=18%  Similarity=0.247  Sum_probs=182.9

Q ss_pred             ccceeeeCcccc-EEEEEECc--CCCEEEEEeCCCCEEEEecccCCC----CceeeEEEecCcCcEEEEEEcCCCCCEEE
Q 026765           11 LHSREYTGHKKK-VHSVAWNC--TGTKLASGSVDQTARVWHIEPHGH----GKVKDIELRGHADSVDQLCWDPKHADLIA   83 (233)
Q Consensus        11 ~~~~~~~~H~~~-V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   83 (233)
                      .....+.+|.+. |++++|+|  ++++|++|+.|++|++|++.....    .......+.+|...|.+++|+|++ .+|+
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEE
Confidence            345678899999 99999999  999999999999999999953200    112334677899999999999986 5677


Q ss_pred             EEeCC----CeEEEEECCCCeeeeeee-ecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCeeeeeee-cCc---eee
Q 026765           84 TASGD----KTVRLWDARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK-FGY---EVN  153 (233)
Q Consensus        84 sg~~d----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~---~~~  153 (233)
                      +++.+    +.|.+||  .++....+. ....+.+++|+|++. .+++++.|+.+++||+.+.+.+.... +..   .+.
T Consensus       133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR  210 (615)
T ss_dssp             EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence            88877    6889998  344444433 335667899999998 79999999999999999888776655 344   799


Q ss_pred             EEEECCC-CCEEEEEeCCCeEEEEecCCceeeeEE-e---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          154 EIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTV-V---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       154 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      +++|+|+ ++++++++.++.+++|+..+++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+.+++++++
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            9999999 999999999999999999999988888 6   899999999999 999999999999999999999999988


Q ss_pred             eec
Q 026765          229 FTK  231 (233)
Q Consensus       229 ~~~  231 (233)
                      +..
T Consensus       290 ~~~  292 (615)
T 1pgu_A          290 WTL  292 (615)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=1.5e-29  Score=229.22  Aligned_cols=207  Identities=18%  Similarity=0.273  Sum_probs=178.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~   90 (233)
                      ...++.+|.+.|++++|+|++++|++|+.|++|+|||+....    ....+.+|...|.+++|+|++ ..++++|+.|+.
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            346778999999999999999999999999999999987532    334678999999999999863 457899999999


Q ss_pred             EEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-----------------------
Q 026765           91 VRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-----------------------  146 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------------------  146 (233)
                      |++||++++++...+.. ...+.+++|+|+++++++++.|+.+++||+++.+.....                       
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            99999999987776554 356678999999999999999999999998765432221                       


Q ss_pred             ---------------------------------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc
Q 026765          147 ---------------------------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG  193 (233)
Q Consensus       147 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  193 (233)
                                                       .+...+..++|+|+++.+++++.++.+++|+..+.+.+..+.+|...
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence                                             11234678899999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          194 CYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      |.+++|+|++++|++++.||.|++||+..
T Consensus       885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            99999999999999999999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.9e-30  Score=209.00  Aligned_cols=209  Identities=12%  Similarity=0.156  Sum_probs=168.9

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-ceeeE--------------------------------------
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDI--------------------------------------   60 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-~~~~~--------------------------------------   60 (233)
                      ..++++++|+|+|++|+++ .++.|++||+...... .+...                                      
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4588999999999966655 5889999998653300 00000                                      


Q ss_pred             --------------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC--CCeeeeeee---ecCCeeEEEECCCCC
Q 026765           61 --------------ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAE---LSGENINITYKPDGT  121 (233)
Q Consensus        61 --------------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~  121 (233)
                                    ..++|...|.+++|+|++..++++|+.|+.|++||+.  ++++...+.   ....+.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                          0124555799999999876556899999999999998  777666553   335677899999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCeeee----e-eecCceeeEEEECCC---CCEEEEEeCCCeEEEEecCCceeeeE-EeeecC
Q 026765          122 HIAVGNRDDELTILDVRKFKPIH----R-RKFGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRPLDT-VVAHTA  192 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~----~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~  192 (233)
                      +|++++.++.+.+|++...+...    . ..+...+.+++|+|+   ++++++++.|+.+++|+.++.+.+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999987665432    2 234567999999999   99999999999999999998887776 458999


Q ss_pred             ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       193 ~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .|.+++|+ ++++|++|+.|+.|+|||+.++++++++.
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            99999999 99999999999999999999999988875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.3e-29  Score=204.08  Aligned_cols=205  Identities=19%  Similarity=0.333  Sum_probs=172.2

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|.+.|++++|  ++++|++|+.||+|++||+....    ....+.+|...|.+++|++   ..+++|+.|+.|+
T Consensus       166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~  236 (435)
T 1p22_A          166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE----MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIA  236 (435)
T ss_dssp             EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC----EEEEECCCCSCEEEEECCT---TEEEEEETTSCEE
T ss_pred             EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc----EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEE
Confidence            4567899999999998  78999999999999999986532    2345778999999999974   4889999999999


Q ss_pred             EEECCCCeeee---eee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765           93 LWDARSGKCSQ---QAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        93 iwd~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +||++++....   ... ....+.++++  +++++++++.|+.+++||+++.+.+.... +...+.++.+  ++++++++
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g  312 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG  312 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEE
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEE
Confidence            99998876432   222 2344556777  78899999999999999999888776655 4456788887  57899999


Q ss_pred             eCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE---------EEEeeecC
Q 026765          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---------CVRTFTKL  232 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~---------~i~~~~~~  232 (233)
                      +.||.+++||.++++.+..+.+|...|.++++  ++++|++|+.||.|+|||+..+.         +++++..+
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h  384 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH  384 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence            99999999999999999999999999999999  67899999999999999998776         78777654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.1e-28  Score=201.05  Aligned_cols=202  Identities=23%  Similarity=0.395  Sum_probs=169.9

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      ..+|...|++++|  ++++|++|+.|++|++||+....    ....+.+|...|.+++|+   +.+|++|+.||.|++||
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd  199 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWD  199 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe----EEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEE
Confidence            3467788999987  79999999999999999986422    334678999999999993   46899999999999999


Q ss_pred             CCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee---e-eecCceeeEEEECCCCCEEEEEeCC
Q 026765           96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---R-RKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +.++++...+..+ ..+.+++|+  +..+++++.|+.+.+||+++.+...   . ..+...+.++.|  +++++++++.|
T Consensus       200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d  275 (435)
T 1p22_A          200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  275 (435)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence            9999877766543 455667775  4599999999999999998765442   1 223456788888  78999999999


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      |.+++||.++++.+..+.+|...|.+++++  ++++++|+.||.|++||+.++++++++..+
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  335 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH  335 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence            999999999999999999999999999994  679999999999999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=3.1e-30  Score=210.20  Aligned_cols=211  Identities=12%  Similarity=0.099  Sum_probs=161.7

Q ss_pred             eeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--cCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--GHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ..+.+|.+.|++|+|+| ++++|+|||.|++|++||++..   . ......  .+...+.+++|+|++ .+|++|+.|+.
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~  232 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN---I-LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGN  232 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC---E-EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSB
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC---c-eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCc
Confidence            34568999999999998 6889999999999999998632   1 111222  234467889999975 68899999999


Q ss_pred             EEEEECCCCeeeeeee-ecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCeeeee----eecCceeeEEEECCCCCEE
Q 026765           91 VRLWDARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHR----RKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  164 (233)
                      |++||++... ...+. ....+.+++|+|++. ++++++.|+.|++||+++.+....    ..+...+.+++|+|+++++
T Consensus       233 i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l  311 (435)
T 4e54_B          233 VILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL  311 (435)
T ss_dssp             EEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred             EeeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence            9999997543 33333 345677899999886 677899999999999987554322    2345679999999999999


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeecC------ceeEEEECCCCCEEEEee------------CCCcEEEEecCCcEEE
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTA------GCYCIAIDPMGRYFAVGS------------ADSLVSLWDISEMLCV  226 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~v~~i~~~p~~~~las~s------------~dg~v~iwd~~~~~~i  226 (233)
                      ++++.||.+++|+..+++....+..|..      .+....|+|++.++++++            .++.|++||..++.++
T Consensus       312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~  391 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM  391 (435)
T ss_dssp             EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred             EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence            9999999999999988877766665543      233456777777666654            3467999999999888


Q ss_pred             Eeee
Q 026765          227 RTFT  230 (233)
Q Consensus       227 ~~~~  230 (233)
                      .++.
T Consensus       392 ~~l~  395 (435)
T 4e54_B          392 CQLY  395 (435)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.1e-28  Score=201.35  Aligned_cols=205  Identities=23%  Similarity=0.354  Sum_probs=173.1

Q ss_pred             ceeeeCccccE-EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V-~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+.+|.+.| +++.  +++++|++|+.|++|++||+....    ....+.+|...|.+++|++   .++++|+.|+.|
T Consensus       111 ~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i  181 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL  181 (445)
T ss_dssp             CEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred             eEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc----EEEEEcCCCCCEEEEEecC---CEEEEEeCCCeE
Confidence            45788999875 5555  569999999999999999986432    3346789999999999973   588999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      ++||+.++++...+..+ ..+.++.++  +..+++++.|+.+.+||+++.+.+.... +...+.++.+  +++.+++++.
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence            99999999877766543 445667774  5689999999999999999887766544 4567888888  7899999999


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ||.+++||.++.+.+..+.+|...|.+++|  +++++++|+.||.|++||+.++++++++..+
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            999999999999999999999999999999  7889999999999999999999999888654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-30  Score=206.43  Aligned_cols=193  Identities=10%  Similarity=0.058  Sum_probs=155.2

Q ss_pred             EECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC---------
Q 026765           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR---------   97 (233)
Q Consensus        27 ~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~---------   97 (233)
                      .+.+++.+|+||+.|++|++||+....  .+..  +.  ...|.++.|+|.    +++|+.|++|++|+..         
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~--~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSK--TITT--IT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSS--CEEE--EE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCc--EEEE--Ee--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC
Confidence            445678899999999999999987532  2222  22  356777888875    7899999999999765         


Q ss_pred             CCeeeeeeee--cCCeeEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEECCCCCEEEEEeCCC
Q 026765           98 SGKCSQQAEL--SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus        98 ~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      +++.......  ...+.+++|+|  +++++++++.|+.+++||+++.+......  ....+.+++|+|+++++++++.||
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            3333333332  24578899999  99999999999999999999887754432  334689999999999999999999


Q ss_pred             eEEEEecCCceee-eEEee-ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          172 TVEVLTYPSLRPL-DTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       172 ~v~~~~~~~~~~~-~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+++||.++++.. ..+.. |...|.+++|+|++.+|++++ |+.|+|||+++..+++++.
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence            9999999988877 67777 999999999999999999999 5599999999887766554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=8.6e-29  Score=208.79  Aligned_cols=213  Identities=12%  Similarity=0.170  Sum_probs=185.2

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCC----CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D----~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      ....+.+|...|++++|+|++++|++++.|    +.|++|+..     . ....+.+|...|.+++|+|++..++++++.
T Consensus       108 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~-----~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  181 (615)
T 1pgu_A          108 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-----N-SLGEVSGHSQRINACHLKQSRPMRSMTVGD  181 (615)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-----C-EEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC-----C-cceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence            345778899999999999999999999988    688888832     1 234678999999999999998768999999


Q ss_pred             CCeEEEEECCCCeeeeeeeec-C---CeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeee-----ecCceeeEEEE
Q 026765           88 DKTVRLWDARSGKCSQQAELS-G---ENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRR-----KFGYEVNEIAW  157 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~-~---~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~  157 (233)
                      |+.|++||+.+++....+..+ .   .+.+++|+|+ ++++++++.|+.+.+||+++.+.+...     .+...+..+.|
T Consensus       182 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~  261 (615)
T 1pgu_A          182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW  261 (615)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE
T ss_pred             CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE
Confidence            999999999998877766644 3   5778999999 999999999999999999988887766     55668999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCceeeeEEeee----cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      + +++++++++.|+.+++|+.++.+.+..+..+    ...+.++.++ +++++++|+.||.|++||+.++++++++..+
T Consensus       262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~  338 (615)
T 1pgu_A          262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGH  338 (615)
T ss_dssp             S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred             c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence            9 9999999999999999999999888888776    3567788885 8899999999999999999999998888654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.6e-29  Score=203.88  Aligned_cols=204  Identities=17%  Similarity=0.222  Sum_probs=167.0

Q ss_pred             cEEEEEECcCCCE-EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-
Q 026765           22 KVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-   99 (233)
Q Consensus        22 ~V~~~~~~~~~~~-l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-   99 (233)
                      ....++++|+... +++++.||.|+||++...+........+.+|...|.+++|+|.++.+|++|+.|+.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            3446788887754 45688999999999854221101112467899999999999955679999999999999999887 


Q ss_pred             ------eeeeeee-ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCCCCEEEEEe
Q 026765          100 ------KCSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus       100 ------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  168 (233)
                            +....+. ....+.+++|+|++ +++++++.|+.|++||+++.+.+....   +...+.+++|+|+++++++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  3334443 34567789999998 699999999999999999988776662   456799999999999999999


Q ss_pred             CCCeEEEEecCCceeeeEE-eeecCc-eeEEEECCCCCEEEEe---eCCCcEEEEecCCcEE
Q 026765          169 GNGTVEVLTYPSLRPLDTV-VAHTAG-CYCIAIDPMGRYFAVG---SADSLVSLWDISEMLC  225 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~-~~~~~~-v~~i~~~p~~~~las~---s~dg~v~iwd~~~~~~  225 (233)
                      .|+.+++||.++++.+..+ ..|... +.++.|+|++++|++|   +.|+.|++||+..+..
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            9999999999999988888 678765 8999999999999999   7999999999987643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-29  Score=198.62  Aligned_cols=199  Identities=10%  Similarity=-0.001  Sum_probs=153.1

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccC------CCCceeeEEEecCcCcEEEEEEcC--CCCCEEEEEeCCCeE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------GHGKVKDIELRGHADSVDQLCWDP--KHADLIATASGDKTV   91 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~sg~~d~~i   91 (233)
                      .+.|+++.|+|+   ++||+.|++|++|+....      ...........+|...|.+++|+|  ++ .++++|+.|+.|
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i  151 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTI  151 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCE
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcE
Confidence            356777778887   999999999999986521      111211122236778999999999  64 688999999999


Q ss_pred             EEEECCCCeeeeeeee--cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee-eeee--cCceeeEEEECCCCCEEEE
Q 026765           92 RLWDARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRK--FGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~  166 (233)
                      ++||++++++......  ...+.+++|+|++.++++|+.|+.|++||+++.+.. ....  +...+.+++|+|+++++++
T Consensus       152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            9999999887554422  234678999999999999999999999999987765 3333  4678999999999999999


Q ss_pred             EeCCCeEEEEecCCceeeeEEee---ecCcee--EEEECCCCCEEEEeeC-CCcEEEEecCCc
Q 026765          167 TTGNGTVEVLTYPSLRPLDTVVA---HTAGCY--CIAIDPMGRYFAVGSA-DSLVSLWDISEM  223 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~~~~~~~~~---~~~~v~--~i~~~p~~~~las~s~-dg~v~iwd~~~~  223 (233)
                      ++ ++.+++||++..+....+..   |...+.  +++|+|++++|++++. |+.|+||++...
T Consensus       232 ~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          232 EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            99 45999999987765544332   444444  6999999999999998 999999998544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=8.4e-28  Score=196.21  Aligned_cols=205  Identities=23%  Similarity=0.358  Sum_probs=175.7

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ...++.+|.+.|++++|+  ++.+++|+.|++|++||+...    .....+.+|...|.+++|++   ..+++|+.|+.|
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i  221 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG----ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATL  221 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEE
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC----cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEE
Confidence            346788999999999997  679999999999999998642    13346789999999999964   478999999999


Q ss_pred             EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      ++||++++++...+..+ ..+.++.+  ++.++++++.|+.+.+||+++.+.+.... +...+.++.|  +++.+++++.
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  297 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL  297 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence            99999998877666543 45566777  78899999999999999999888776654 4457888888  8899999999


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      |+.+++||.++++.+..+.+|...+.+++++  +++|++|+.||.|++||+.++++++++..
T Consensus       298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          298 DTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             CCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence            9999999999999999999999999888875  57999999999999999999999998864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.2e-29  Score=203.22  Aligned_cols=191  Identities=10%  Similarity=0.063  Sum_probs=154.7

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC-----cEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-----SVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +|...|++++|+|+|++||+++.||.|++|+.+.      ....+. |..     .|.+++|+|++ ++|++|+.||+|+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVk  154 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQ  154 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEE
Confidence            6788999999999999999999999999999532      222344 554     59999999986 5789999999999


Q ss_pred             EEECCCCee-------eeeeee-----cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee---eeee--cCceeeEE
Q 026765           93 LWDARSGKC-------SQQAEL-----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRK--FGYEVNEI  155 (233)
Q Consensus        93 iwd~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~--~~~~~~~~  155 (233)
                      +||+.++..       ...+..     ...+.+++|+|+|  +++++.|+.+++||+......   ...+  +...|.++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence            999988742       233321     2367889999999  888899999999999775532   2232  34579999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE--CCCCCEEEEeeCCCcEEEEecCC
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI--DPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +|+  ++.+++++ ++.+++|+....+......+|...|..++|  +|++..|+++++||+ ++|..+.
T Consensus       233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~  297 (588)
T 2j04_A          233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE  297 (588)
T ss_dssp             EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred             EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence            998  67888886 699999999887774444489999999999  999999999999999 9999873

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.8e-27  Score=189.65  Aligned_cols=212  Identities=15%  Similarity=0.161  Sum_probs=174.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ...+.+|. .+++++|+|+++++ ++++.|++|++||+...   . ....+..+ ..+.+++|+|++..++++++.++.|
T Consensus        25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~-~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v   98 (391)
T 1l0q_A           25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN---N-VIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTL   98 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---E-EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC---e-EEEEEECC-CCccceEECCCCCEEEEEECCCCEE
Confidence            34566564 58999999999976 77779999999998642   1 12234434 4899999999876666777788999


Q ss_pred             EEEECCCCeeeeeeeecCCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE-EEEeC
Q 026765           92 RLWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-FLTTG  169 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  169 (233)
                      ++||+.+++..........+..++|+|+++++ ++++.++.+.+||+++.+.+.....+..+..+.|+++++.+ +++..
T Consensus        99 ~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A           99 SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence            99999999887777777777889999999987 67888999999999988887777766778999999999987 46677


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee---CCCcEEEEecCCcEEEEeeec
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s---~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ++.+++||..+.+....+. +...+.+++|+|++++|++++   .++.|++||+.++++++.+..
T Consensus       179 ~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          179 SMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            8999999999887766554 566789999999999998888   689999999999998887764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.4e-30  Score=206.87  Aligned_cols=214  Identities=16%  Similarity=0.159  Sum_probs=139.4

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCcee-eEEEecCcCcEEEEEEcCC-------CCCEEEEEeCCCe
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPK-------HADLIATASGDKT   90 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~-------~~~~l~sg~~d~~   90 (233)
                      |.+.+....+++++.+|++|+.|++|||||+......... ...+.+|.+.|.+++|+|.       ++++|+||+.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            4444444455556678999999999999998753211111 1125789999999999872       3568999999999


Q ss_pred             EEEEECCCCeeee-eeeecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCeeeeeee---------------------
Q 026765           91 VRLWDARSGKCSQ-QAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---------------------  147 (233)
Q Consensus        91 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------  147 (233)
                      |+|||++++.+.. .......+.+++|+|++. +|++++.|+.|++||+++.+......                     
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            9999998776544 445567788999999874 79999999999999997654322110                     


Q ss_pred             -----cCceeeEEEEC-CCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE------------------CC--
Q 026765          148 -----FGYEVNEIAWN-MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI------------------DP--  201 (233)
Q Consensus       148 -----~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~------------------~p--  201 (233)
                           +...+..+.|. ++++.+++++.|+.+++||....+....+..|...+..+.+                  +|  
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence                 11235567765 89999999999999999998876666656555544443333                  32  


Q ss_pred             CCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          202 MGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       202 ~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++.++++|+.||+|+|||+.+++++..+.++
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~  358 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQL  358 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            3346788899999999999998877665543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4.8e-27  Score=188.26  Aligned_cols=211  Identities=18%  Similarity=0.171  Sum_probs=174.1

Q ss_pred             eeeeCccccEEEEEECcCCCEEE-EEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~-s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ..+..|. .+++++|+|++++|+ +++.|+.|++||+....    ....+. +...+.+++|+|++..++++++.|+.|+
T Consensus        68 ~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           68 ATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT----VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe----EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            3444443 899999999999875 55567999999986421    122333 4457899999998766668899999999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe---
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT---  168 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  168 (233)
                      +||+.+++..........+..++|+|+++++ +++..++.+.+||+++.+..........+..++|+++++++++++   
T Consensus       142 ~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  221 (391)
T 1l0q_A          142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK  221 (391)
T ss_dssp             EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             EEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCc
Confidence            9999999887777767777889999999988 567788999999999988777777777889999999999999887   


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE-EEeeCCCcEEEEecCCcEEEEeeec
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .++.+.+||..+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.++++++++..
T Consensus       222 ~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          222 YFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            68999999999888888777655 57899999999987 6778899999999999999888754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=9.4e-28  Score=194.86  Aligned_cols=212  Identities=13%  Similarity=0.101  Sum_probs=178.4

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+.+|.+.|++++|+|++.++++++.|+.|++||+....    ....+..|...+.+++|+|++..++++++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            456899999999999999999999999999999986422    2235668889999999999876666777789999999


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc--------CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE-E
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGN--------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-F  165 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  165 (233)
                      |+++++..........+..++|+|+++++++++        .|+.|.+||+++.+..........+..++|+|+++.+ +
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEE
T ss_pred             ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEE
Confidence            999988777666666677899999999999887        4789999999988777666555578889999999865 4


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC---------------CCcEEEEecCCcEEEEeee
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---------------DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~---------------dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++..++.+.+|+..+.+....+. +...+.+++|+|++++|++++.               ||.|++||+.+++.++.+.
T Consensus       320 ~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            55889999999999888776664 7778999999999999888876               5799999999999988875


Q ss_pred             c
Q 026765          231 K  231 (233)
Q Consensus       231 ~  231 (233)
                      .
T Consensus       399 ~  399 (433)
T 3bws_A          399 A  399 (433)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.9e-29  Score=217.59  Aligned_cols=211  Identities=15%  Similarity=0.099  Sum_probs=164.4

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE--Ee-----cCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LR-----GHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~--~~-----~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      .+.||...+.+++|+|++++|+||+.|++||+||+............  +.     +|...|.+++|+|++ .+||+|+.
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~  508 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIE  508 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEET
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEec
Confidence            46778888888889999999999999999999998754221111112  22     899999999999985 58899999


Q ss_pred             CCeEEEEECCCCe---------------------------------------------eeeeee-ecCCeeEEEECCCCC
Q 026765           88 DKTVRLWDARSGK---------------------------------------------CSQQAE-LSGENINITYKPDGT  121 (233)
Q Consensus        88 d~~i~iwd~~~~~---------------------------------------------~~~~~~-~~~~~~~~~~~~~~~  121 (233)
                      |++|+|||+.+++                                             +...+. ..+.+.+++|+|+| 
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence            9999999987652                                             122232 34567889999999 


Q ss_pred             eEEEEcCCCcEEEEEcCCCeeeeee-------ecCceeeEEEEC-----CCC---CEEEEEeCCCeEEEEec---CCcee
Q 026765          122 HIAVGNRDDELTILDVRKFKPIHRR-------KFGYEVNEIAWN-----MTG---EMFFLTTGNGTVEVLTY---PSLRP  183 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~-----~~~---~~~~~~~~~~~v~~~~~---~~~~~  183 (233)
                      +|++|+.|+.|++||+++...+...       .+...|++++|+     +||   +.+++++.|+++++|++   .+++.
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence            9999999999999999877665421       123349999999     885   89999999999999998   67777


Q ss_pred             eeEEeeec-----CceeEEE-EC----------------------CCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          184 LDTVVAHT-----AGCYCIA-ID----------------------PMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       184 ~~~~~~~~-----~~v~~i~-~~----------------------p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      ...+.+|.     .+|.+++ |+                      +++..|+++  +..||||++.++++++..
T Consensus       668 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~  739 (902)
T 2oaj_A          668 DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG  739 (902)
T ss_dssp             EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE
T ss_pred             EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE
Confidence            77887774     6777776 65                      455455554  778999999999888665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=4.1e-27  Score=183.22  Aligned_cols=204  Identities=17%  Similarity=0.296  Sum_probs=156.9

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  102 (233)
                      .++|+||+++ +||+| .|++|+|||+++.  ......++.+|...|.+++|+|++ ++|++|+.|+.|++||++++++.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg--~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCC--CEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeE
Confidence            4689999876 66665 5999999998753  233444567889999999999985 68899999999999999987654


Q ss_pred             eeeeec------------------------------------------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC
Q 026765          103 QQAELS------------------------------------------GENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (233)
Q Consensus       103 ~~~~~~------------------------------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  140 (233)
                      .....+                                          .....+.+.++++++++++.|+.+++||+++.
T Consensus       103 ~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            332211                                          11234678899999999999999999999865


Q ss_pred             eeee-----eeecCceeeEEEECCCCCEEE---EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee--
Q 026765          141 KPIH-----RRKFGYEVNEIAWNMTGEMFF---LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS--  210 (233)
Q Consensus       141 ~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s--  210 (233)
                      +...     .......+..+.+.+.+..++   .++.++.+++|+......... ..+...+..+.|+|+++.+++++  
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECT
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEc
Confidence            4321     122344688889988776543   445689999999887665544 45777899999999999887654  


Q ss_pred             CCCcEEEEecCCcEEEEeeecC
Q 026765          211 ADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       211 ~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .|+.|+|||+.+++++++|.+|
T Consensus       262 ~d~~i~iwd~~~~~~~~~l~gH  283 (318)
T 4ggc_A          262 AQNQLVIWKYPTMAKVAELKGH  283 (318)
T ss_dssp             TTCCEEEEETTTCCEEEEECCC
T ss_pred             CCCEEEEEECCCCcEEEEEcCC
Confidence            7999999999999999999876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=8.7e-27  Score=189.04  Aligned_cols=202  Identities=17%  Similarity=0.337  Sum_probs=160.0

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  102 (233)
                      ++.|+|+++ +.||+|. |++|+|||+.+..  .....++.+|...|++++|+|++ .+|++|+.|+.|++||+.++++.
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEE
Confidence            567999975 5776665 9999999987532  33444567888999999999975 68899999999999999999887


Q ss_pred             eeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee-ee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765          103 QQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (233)
Q Consensus       103 ~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  179 (233)
                      .....+. .+.++  ++++..+++|+.|+.+.+||.+..... .. ..+...+..+.|+++++++++++.|+.+++|+..
T Consensus       183 ~~~~~h~~~v~~~--s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          183 RNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEECCCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEeCCCCceEEE--eeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            7665443 33344  456789999999999999998764332 22 2345678899999999999999999999999987


Q ss_pred             Cce----eeeEEeeecCceeEEEECCCCC-EEEE--eeCCCcEEEEecCCcEEEEeeec
Q 026765          180 SLR----PLDTVVAHTAGCYCIAIDPMGR-YFAV--GSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       180 ~~~----~~~~~~~~~~~v~~i~~~p~~~-~las--~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.+    .+.....|...|.+++|+|.+. .+++  |+.|++|+|||+.++.++..+..
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~  319 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA  319 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence            654    3456677899999999999765 4554  56899999999999999888764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.3e-29  Score=203.18  Aligned_cols=184  Identities=9%  Similarity=0.036  Sum_probs=146.6

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      -...|.+|+|+|||+++||+|.|++|+  |....     .  .+.+|...|..++|+|++        .++.+.+|+.+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~--~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~   76 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----K--DINCNSKNLFHVKEFPLE--------FENKLDFELAQQ   76 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----S--CCSSBGGGTEEEEEECCC--------CCCTTTTSCCCS
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccc-----c--eecCCCccEEEEEECCCC--------CcceEEEEeCCC
Confidence            357899999999999999999999999  64321     1  236899999999999986        566666666443


Q ss_pred             CeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc-----eeeEEEECCCCCEEEEEeCCCeE
Q 026765           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-----EVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      .. .........+.+++|+|+|.+|++++.|+.+.+||...  .+....+..     .+.+++|+|+|+++++++.||++
T Consensus        77 ~~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           77 NG-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             SC-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             ce-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence            22 22222355678899999999999999999999999543  333323222     48999999999999999999999


Q ss_pred             EEEecCCce-------eeeEE----eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          174 EVLTYPSLR-------PLDTV----VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       174 ~~~~~~~~~-------~~~~~----~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ++|+...++       .+.++    .+|...|.+++|+|+|  +++++.|++|++||+....
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            999998764       24565    5677899999999999  8899999999999998776

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.7e-25  Score=181.32  Aligned_cols=212  Identities=13%  Similarity=0.138  Sum_probs=163.6

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCC---CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~---~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      ..+.+.+|.+.|.+++|+|+|++|++++.|+   .|++||+....     ...+..|...+.+++|+|++..++++++.|
T Consensus       170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-----~~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VRQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-----EEEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            3467788999999999999999999999885   99999987432     224667888999999999976566577776


Q ss_pred             Ce--EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCE
Q 026765           89 KT--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        89 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (233)
                      +.  |.+||+.+++.............++|+|+|++|+.++. ++  .|.+||+.+.+..........+..++|+|+|++
T Consensus       245 g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSE
T ss_pred             CCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCE
Confidence            65  89999988876443333455678999999999988775 44  577778877654332334457888999999999


Q ss_pred             EEEEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEEEeeec
Q 026765          164 FFLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       164 ~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i~~~~~  231 (233)
                      ++.++.+   ..+.+|+..+++. ..+..+. .+.+++|+|+|++|+.++.|+   .|.+||+. +..++.+..
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~  395 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA  395 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC
T ss_pred             EEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC
Confidence            9888754   5899999987665 3455554 789999999999999998877   79999987 445555543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=2.2e-24  Score=174.95  Aligned_cols=203  Identities=12%  Similarity=0.079  Sum_probs=164.6

Q ss_pred             ceeeeCccccEEEEEECcCCCEEE-EEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe-----
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-----   86 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~-s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~-----   86 (233)
                      ...+..|...+.+++|+|+++.++ +++.|+.|++||+....    ....+. +...+.+++|+|++. .+++++     
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~  277 (433)
T 3bws_A          204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL----EIRKTD-KIGLPRGLLLSKDGK-ELYIAQFSASN  277 (433)
T ss_dssp             EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----EEEECC-CCSEEEEEEECTTSS-EEEEEEEESCT
T ss_pred             EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----EEEEec-CCCCceEEEEcCCCC-EEEEEECCCCc
Confidence            356678999999999999999885 55579999999986421    122333 345689999999865 555666     


Q ss_pred             ---CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCC
Q 026765           87 ---GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (233)
Q Consensus        87 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (233)
                         .|+.|++||+++++..........+..++|+|+++.+ ++++.++.+.+||+.+.+..........+..++|+|+++
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGK  357 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCC
Confidence               5889999999998876666555667789999999765 566889999999999888877777777889999999999


Q ss_pred             EEEEEeC---------------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC-CCcEEEEecCC
Q 026765          163 MFFLTTG---------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE  222 (233)
Q Consensus       163 ~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~  222 (233)
                      ++++++.               ||.+++||..+++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus       358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9888876               46999999999888877765 557899999999999988875 99999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=3.6e-25  Score=175.90  Aligned_cols=198  Identities=9%  Similarity=0.094  Sum_probs=146.4

Q ss_pred             ccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC----------------C----
Q 026765           21 KKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----------------A----   79 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~----   79 (233)
                      ..+..+++.++++.+ ++++.|++|++||+....  .+  .++. |...|.+++++++.                .    
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~--~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DV--SRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI  133 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EE--EEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EE--EEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence            357888999988887 567789999999986421  11  2232 55677777776531                1    


Q ss_pred             --------------CEEEE--EeCCCeEEEEECCCCe----------------eeeeee-ecCCeeEEEECCCCCeEEEE
Q 026765           80 --------------DLIAT--ASGDKTVRLWDARSGK----------------CSQQAE-LSGENINITYKPDGTHIAVG  126 (233)
Q Consensus        80 --------------~~l~s--g~~d~~i~iwd~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~l~~~  126 (233)
                                    .+++.  |+.||.|++||+++++                +...+. +...+.+++|+|++++|+++
T Consensus       134 ~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          134 TDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             SCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence                          12333  5788889999887654                122232 34567789999999999999


Q ss_pred             cCCCc-EEEEEcCCCeeeeeee---cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee--EE-------------
Q 026765          127 NRDDE-LTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD--TV-------------  187 (233)
Q Consensus       127 ~~d~~-i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~-------------  187 (233)
                      +.|++ +++||+++.+.+....   +...+.+++|+|+++++++++.|+.+++|+++......  .+             
T Consensus       214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW  293 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence            99998 9999999988887776   56789999999999999999999999999986532111  00             


Q ss_pred             -------e-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          188 -------V-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       188 -------~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                             . .+......++|+|++++|++++.||.+++|++..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                   0 01122367899999999999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=1.5e-24  Score=170.01  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=133.1

Q ss_pred             EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeee-ecCCeeEEEECC--CCCeEEEEcCCCcEE
Q 026765           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINITYKP--DGTHIAVGNRDDELT  133 (233)
Q Consensus        61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~d~~i~  133 (233)
                      .+.+|.+.|++++|+|++ .+|++|+.|+.|++||+.++.    ....+. ....+.+++|+|  ++.+|++++.|+.++
T Consensus         6 ~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            467999999999999975 688999999999999998763    333333 345678899999  699999999999999


Q ss_pred             EEEcCCC---------eeeeee-ecCceeeEEEECCC--CCEEEEEeCCCeEEEEecCCcee------------------
Q 026765          134 ILDVRKF---------KPIHRR-KFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYPSLRP------------------  183 (233)
Q Consensus       134 i~d~~~~---------~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~------------------  183 (233)
                      +||++..         +..... .+...+.+++|+|+  ++++++++.|+.+++||.++.+.                  
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999875         223332 24567999999999  99999999999999999754321                  


Q ss_pred             ------------------------------------------eeEEeeecCceeEEEECCCC----CEEEEeeCCCcEEE
Q 026765          184 ------------------------------------------LDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSL  217 (233)
Q Consensus       184 ------------------------------------------~~~~~~~~~~v~~i~~~p~~----~~las~s~dg~v~i  217 (233)
                                                                +..+.+|...|.+++|+|++    ++|++|+.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                      33445688899999999998    89999999999999


Q ss_pred             EecCCc
Q 026765          218 WDISEM  223 (233)
Q Consensus       218 wd~~~~  223 (233)
                      ||+..+
T Consensus       245 wd~~~~  250 (351)
T 3f3f_A          245 FKITEK  250 (351)
T ss_dssp             EEEEEC
T ss_pred             EeCCCC
Confidence            999875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.7e-23  Score=168.38  Aligned_cols=207  Identities=14%  Similarity=0.166  Sum_probs=157.9

Q ss_pred             ceeeeCccccEEEEEECc--------------CCCEEEEEeCC------CCEEEEecccCCCCceeeEEEecCcCcEEEE
Q 026765           13 SREYTGHKKKVHSVAWNC--------------TGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHADSVDQL   72 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~--------------~~~~l~s~~~D------~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~   72 (233)
                      .+.+.+|...++.+++++              .+..++.++.+      ++|++||++..   .  ...+.+|...+.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~--~~~l~~~~~~v~~~  184 (415)
T 2hqs_A          110 QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---N--QFVVHRSPQPLMSP  184 (415)
T ss_dssp             EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---S--CEEEEEESSCEEEE
T ss_pred             eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---C--CEEEeCCCCcceee
Confidence            356888888888888775              26777777664      79999998632   1  23466789999999


Q ss_pred             EEcCCCCCEEEEEeCCC---eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCc--EEEEEcCCCeeeeee
Q 026765           73 CWDPKHADLIATASGDK---TVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDE--LTILDVRKFKPIHRR  146 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~  146 (233)
                      +|+|++ +.|++++.++   .|++||+.++++.........+..++|+|+|++|+ +++.++.  |.+||+.+.+.....
T Consensus       185 ~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~  263 (415)
T 2hqs_A          185 AWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT  263 (415)
T ss_dssp             EECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred             EEcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc
Confidence            999986 4677788775   99999999887755444455677899999999888 6665554  899999876654333


Q ss_pred             ecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC---CcEEEEec
Q 026765          147 KFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDI  220 (233)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d---g~v~iwd~  220 (233)
                      .....+..+.|+|+|+.++.++. ++  .+.+|+..+++. ..+..+...+.+++|+|+|++|+.++.+   ..|++||+
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            44556889999999999988876 44  677778776553 3455577788999999999999988865   58999999


Q ss_pred             CCcEEE
Q 026765          221 SEMLCV  226 (233)
Q Consensus       221 ~~~~~i  226 (233)
                      .++++.
T Consensus       343 ~~~~~~  348 (415)
T 2hqs_A          343 ATGGVQ  348 (415)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            988763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=3.5e-22  Score=155.19  Aligned_cols=205  Identities=11%  Similarity=0.157  Sum_probs=137.5

Q ss_pred             EEEEEECcCC-C--EEEEEeCCCCEEEEecccCCCCceeeEEEecCcC-------------------------cEEEEEE
Q 026765           23 VHSVAWNCTG-T--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-------------------------SVDQLCW   74 (233)
Q Consensus        23 V~~~~~~~~~-~--~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~-------------------------~v~~~~~   74 (233)
                      |.++-|-..| +  .+++++ ..+|++|++... ........+.+|..                         .|..+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            4555664433 3  456666 689999998753 22223334444444                         4556666


Q ss_pred             cCC----CCCEEEEEe--------------------CCCeEEEEECC-CCeeeeeeeec-CCeeEEEECC---CCCeEEE
Q 026765           75 DPK----HADLIATAS--------------------GDKTVRLWDAR-SGKCSQQAELS-GENINITYKP---DGTHIAV  125 (233)
Q Consensus        75 ~~~----~~~~l~sg~--------------------~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~~---~~~~l~~  125 (233)
                      +|+    + ..+++++                    .|+.|++|++. +++.......+ ..+..++|+|   ++..|++
T Consensus       120 spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS  198 (356)
T 2w18_A          120 SSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG  198 (356)
T ss_dssp             ------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred             CCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE
Confidence            665    3 2344444                    27888888883 35554443333 3445678888   7789999


Q ss_pred             EcCCCcEEEEEcCCCeeeeeeecC----ceeeEEEECCCCCEE------------EEEeCCCeEEEEecCCceeeeEE--
Q 026765          126 GNRDDELTILDVRKFKPIHRRKFG----YEVNEIAWNMTGEMF------------FLTTGNGTVEVLTYPSLRPLDTV--  187 (233)
Q Consensus       126 ~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~--  187 (233)
                      ++.|++|++||+.+++.+..+..+    ..+.+++|+|+|+++            ++++.|+++++|+..+++.+..+  
T Consensus       199 gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          199 TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            999999999999999887776522    245667899999887            45678899999999988877654  


Q ss_pred             ---eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          188 ---VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       188 ---~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                         .+|.....+..++  +.++|+|+.|++|+|||+.+++++++|.++
T Consensus       279 ~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          279 CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence               2555554444443  789999999999999999999999999754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=4.1e-22  Score=156.39  Aligned_cols=212  Identities=14%  Similarity=0.103  Sum_probs=148.4

Q ss_pred             CccccEEEEEECcCCCEEEEEeCC-CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D-~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .|...+.+++|+|++++|++++.+ +.|++|+++...........+..+. .+..++|+|++..+++++..++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            477889999999999999998876 9999999973221111222333333 78899999987655555556899999999


Q ss_pred             CCC---eeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCC-Ceeee----ee--ecCceeeEEEECCCCCEEE
Q 026765           97 RSG---KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRK-FKPIH----RR--KFGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        97 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~----~~--~~~~~~~~~~~~~~~~~~~  165 (233)
                      ..+   +..........+..++|+|+++++++++ .++.+.+||+.. .+...    ..  ..+..+..++|+|++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~  193 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  193 (343)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence            433   3333333344566799999999888776 889999999976 43321    11  1234677899999999776


Q ss_pred             EEe-CCCeEEEEecCC--cee--eeEEee----e--cCceeEEEECCCCCEEE-EeeCCCcEEEEecC----CcEEEEee
Q 026765          166 LTT-GNGTVEVLTYPS--LRP--LDTVVA----H--TAGCYCIAIDPMGRYFA-VGSADSLVSLWDIS----EMLCVRTF  229 (233)
Q Consensus       166 ~~~-~~~~v~~~~~~~--~~~--~~~~~~----~--~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~----~~~~i~~~  229 (233)
                      +++ .++.+.+|+...  ++.  ...+..    +  ...+..++|+|++++|+ ++..|+.|.+||+.    ..+.+..+
T Consensus       194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~  273 (343)
T 1ri6_A          194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  273 (343)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence            665 789999999853  322  222221    1  22456899999998876 55579999999998    34455544


Q ss_pred             e
Q 026765          230 T  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       274 ~  274 (343)
T 1ri6_A          274 P  274 (343)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2.4e-22  Score=154.13  Aligned_cols=205  Identities=13%  Similarity=0.121  Sum_probs=150.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc-CCCCceeeEEEecC-cCcEEEEEEcCCCCCEEEEEe--CCC
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-HGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATAS--GDK   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~-~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sg~--~d~   89 (233)
                      ..+..|.+.|.+++|+|+|++|++++ ++.|++||+.. ...   . ....++ ...+.+++|+|++ +.|++++  .++
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---~-~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~  108 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---E-KVDTGFATICNNDHGISPDG-ALYAISDKVEFG  108 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---E-ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTS
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---e-EeccccccccccceEECCCC-CEEEEEEeCCCC
Confidence            45567899999999999999999987 88999999865 321   1 123344 4678899999986 4666777  334


Q ss_pred             eEEEEE--CCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcC--CCeeeeeeecCceeeEEEECCCCCEE
Q 026765           90 TVRLWD--ARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVR--KFKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        90 ~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                      ..+||.  +.++. ...+........++|+|++++++ ++..++.+.+|++.  +.+..........+..+.|+|+++.+
T Consensus       109 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          109 KSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             SCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred             cceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence            555554  44444 23333344466789999999887 67788988998853  33333223344568899999999988


Q ss_pred             EEEe-CCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEeeCC-----------CcEEEEecCCcEE
Q 026765          165 FLTT-GNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----------SLVSLWDISEMLC  225 (233)
Q Consensus       165 ~~~~-~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-----------g~v~iwd~~~~~~  225 (233)
                      +.++ .++.+.+|+++ .......+..|...+.+++|+|++++|+.++.+           +.|.+||+..++.
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            8776 58899999875 455566677777788999999999999988876           5699999987754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=8.2e-23  Score=166.40  Aligned_cols=201  Identities=13%  Similarity=0.146  Sum_probs=148.5

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC--------Ccee----eEEEecCcCcEEEEEEcCCCCCEEE---
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH--------GKVK----DIELRGHADSVDQLCWDPKHADLIA---   83 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~--------~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~---   83 (233)
                      +...++.+++++++.++++++.|+ ++||+......        ....    ... ..+...|.+++|+|++. +|+   
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~-~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNL-TLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSC-EEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCC-EEEEEE
Confidence            345689999999999999999988 99987642100        0100    011 23567899999999864 566   


Q ss_pred             -EEeCCCeEEEEECCCC--------eeeeeee----ecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeee-ec
Q 026765           84 -TASGDKTVRLWDARSG--------KCSQQAE----LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRR-KF  148 (233)
Q Consensus        84 -sg~~d~~i~iwd~~~~--------~~~~~~~----~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~  148 (233)
                       +|+.|+.|+|||++++        +......    +...+.+++|+|+ +.++++++.|+.+++||+++....... .+
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~  191 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS  191 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence             8899999999998654        1111111    2456788999998 789999999999999999887554332 34


Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-------CceeEEEECCCCCEEEE-eeCCCc------
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-------AGCYCIAIDPMGRYFAV-GSADSL------  214 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~i~~~p~~~~las-~s~dg~------  214 (233)
                      ...+.+++|+|+|+++++++.||.+++||.+ ++....+..|.       ..|.+++|++++.++++ ++.||.      
T Consensus       192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            5679999999999999999999999999987 44444444432       37899999998888754 334433      


Q ss_pred             EEEEecCCc
Q 026765          215 VSLWDISEM  223 (233)
Q Consensus       215 v~iwd~~~~  223 (233)
                      +++|++...
T Consensus       271 v~i~~l~~~  279 (434)
T 2oit_A          271 VVMALLPKK  279 (434)
T ss_dssp             EEEEECCCT
T ss_pred             eEEEEeccC
Confidence            899999754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=3.4e-20  Score=146.32  Aligned_cols=208  Identities=15%  Similarity=0.196  Sum_probs=147.2

Q ss_pred             eeCccccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeE-EEec---------CcCcEEEEEEcCCCCCEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDI-ELRG---------HADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~-~~~~---------h~~~v~~~~~~~~~~~~l~s   84 (233)
                      +..|...+..++|+|+|++|++++ .+++|++|++.....  .... .+..         +...+.+++|+|++. ++++
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~  157 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA--LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI  157 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC--EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC--eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence            345677888999999999998888 689999999864221  1111 1211         123488899999876 7778


Q ss_pred             EeCCCeEEEEECC-CCeeeeee--ee--cCCeeEEEECCCCCeEEE-EcCCCcEEEEEcCC--Ceee--eeeec-C----
Q 026765           85 ASGDKTVRLWDAR-SGKCSQQA--EL--SGENINITYKPDGTHIAV-GNRDDELTILDVRK--FKPI--HRRKF-G----  149 (233)
Q Consensus        85 g~~d~~i~iwd~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~--~~~~~-~----  149 (233)
                      ...++.|.+||+. +++.....  ..  ...+..++|+|+|+++++ ...++.+.+|++..  .+..  ..... .    
T Consensus       158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  237 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT  237 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred             eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence            7888999999998 45433221  11  224567999999997665 56678999999864  3321  11111 1    


Q ss_pred             --ceeeEEEECCCCCEEEE-EeCCCeEEEEecC---CceeeeEEeeecCceeEEEECCCCCEEEEeeCC-CcEEEE--ec
Q 026765          150 --YEVNEIAWNMTGEMFFL-TTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SLVSLW--DI  220 (233)
Q Consensus       150 --~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~v~iw--d~  220 (233)
                        ..+..++|+|+|+++++ ...++.+.+|+..   ..+.+..+..+...+..++|+|+|++|++++.+ +.|.+|  |.
T Consensus       238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence              34778999999998754 4568999999986   335555566666778999999999998888765 899999  55


Q ss_pred             CCcEEE
Q 026765          221 SEMLCV  226 (233)
Q Consensus       221 ~~~~~i  226 (233)
                      ++++..
T Consensus       318 ~tg~l~  323 (347)
T 3hfq_A          318 TSGKLS  323 (347)
T ss_dssp             TTCCEE
T ss_pred             CCCeEE
Confidence            556543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=2.1e-20  Score=146.39  Aligned_cols=210  Identities=13%  Similarity=0.100  Sum_probs=153.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-C--
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K--   89 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-~--   89 (233)
                      ..+..+...+ .++|+|+|++++.++. ++.|.+||+....   .....+..+..+..+++|+|++. .++++..+ +  
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~  108 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP---PKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPF  108 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS---CEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSC
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc---eeEEecccCCCCccceEECCCCC-EEEEecCCCCcc
Confidence            3444456666 9999999997766665 8999999986532   11234455666666699999865 45555444 3  


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE-cCCCc-EEEEEcCCCeee-----eeeecCceeeEEEECCCCC
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE-LTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGE  162 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~  162 (233)
                      .|.+||+.+++.............++|+|++++++++ ..++. +.+|++.....+     .....+.....+.|+|+|+
T Consensus       109 ~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~  188 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN  188 (331)
T ss_dssp             EEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS
T ss_pred             cEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC
Confidence            8999999999887777666667889999999876655 45578 999998753322     1122344578899999999


Q ss_pred             EEEEEe-CCCeEEEEecCCcee---eeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEecCCcEE--EEee
Q 026765          163 MFFLTT-GNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLC--VRTF  229 (233)
Q Consensus       163 ~~~~~~-~~~~v~~~~~~~~~~---~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~--i~~~  229 (233)
                      ++++++ .++.+.+||..+++.   +..+. ....+..++|+|+|++|+.++ .++.|.+||+.+++.  +.++
T Consensus       189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~  261 (331)
T 3u4y_A          189 FAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF  261 (331)
T ss_dssp             EEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc
Confidence            766554 689999999987776   65555 346678999999999776554 578899999998877  4444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=2.2e-20  Score=156.10  Aligned_cols=212  Identities=11%  Similarity=0.103  Sum_probs=156.8

Q ss_pred             eeee-CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcC----CCCCEEEEEe-C
Q 026765           14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP----KHADLIATAS-G   87 (233)
Q Consensus        14 ~~~~-~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~sg~-~   87 (233)
                      .++. +|.  ++.++|+|+|++|++++.|++|++||+..... . ...+++ +...+..++|+|    ++. ++++++ .
T Consensus       173 ~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~-~~~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~  246 (543)
T 1nir_A          173 KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP-T-KVAEIK-IGIEARSVESSKFKGYEDR-YTIAGAYW  246 (543)
T ss_dssp             EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-E-EEEEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEE
T ss_pred             EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC-c-EEEEEe-cCCCcceEEeCCCcCCCCC-EEEEEEcc
Confidence            4455 443  89999999999999999999999999932111 1 122344 445679999999    865 555665 5


Q ss_pred             CCeEEEEECCCCeeeeeeeec------------CCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeee--eeecCcee
Q 026765           88 DKTVRLWDARSGKCSQQAELS------------GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIH--RRKFGYEV  152 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~  152 (233)
                      +++|.+||..+.++...+...            ..+..+.++|++..+ ++...++.|.+||+.+.+.+.  ....+..+
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~  326 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL  326 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc
Confidence            899999999998877665432            134578899977654 566778999999987754433  33444557


Q ss_pred             eEEEECCCCCEEEEEe-CCCeEEEEecCCceeeeEEee----ecCceeEEEECCC-CCEEEEee-CCCcEEEEecCC---
Q 026765          153 NEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPM-GRYFAVGS-ADSLVSLWDISE---  222 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----~~~~v~~i~~~p~-~~~las~s-~dg~v~iwd~~~---  222 (233)
                      ..+.|+|+++++++++ .++++.+||..+++.+..+..    |......+ ++|+ +..++++. .|++|.|||+++   
T Consensus       327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~  405 (543)
T 1nir_A          327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH  405 (543)
T ss_dssp             CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence            7899999999877664 589999999999988877764    54433333 4677 66677776 689999999998   


Q ss_pred             ----cEEEEeeecC
Q 026765          223 ----MLCVRTFTKL  232 (233)
Q Consensus       223 ----~~~i~~~~~~  232 (233)
                          .++++++..+
T Consensus       406 ~~~~~~~v~~l~~~  419 (543)
T 1nir_A          406 PQYAWKKVAELQGQ  419 (543)
T ss_dssp             TTTBTSEEEEEECS
T ss_pred             chhcCeEEEEEEcC
Confidence                8899998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=1.5e-20  Score=157.05  Aligned_cols=197  Identities=13%  Similarity=0.096  Sum_probs=155.0

Q ss_pred             EECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC--CCCeeee
Q 026765           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDA--RSGKCSQ  103 (233)
Q Consensus        27 ~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~~  103 (233)
                      +|+|++..+++++.|++|.+||.....  .+  ..+. ++.  +..++|+|++ ++|++++.|+.|++||+  .++++..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~--~~i~~g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IV--KVIDTGYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC--EE--EEEECSTT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce--EE--EEEecCcc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEE
Confidence            388999999999999999999986432  22  2344 443  8899999986 57788999999999999  7888777


Q ss_pred             eeeecCCeeEEEECC----CCCeEEEEcC-CCcEEEEEcCCCeeeeeeecC------------ceeeEEEECCCCCEEEE
Q 026765          104 QAELSGENINITYKP----DGTHIAVGNR-DDELTILDVRKFKPIHRRKFG------------YEVNEIAWNMTGEMFFL  166 (233)
Q Consensus       104 ~~~~~~~~~~~~~~~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  166 (233)
                      .+.....+..++|+|    +|+++++++. ++.+.+||..+.+.+......            ..+..+.++++++.+++
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            776666677899999    9999998884 799999999888877665431            24678899998776554


Q ss_pred             -EeCCCeEEEEecCCceeee-EEeeecCceeEEEECCCCCEEEEe-eCCCcEEEEecCCcEEEEeee
Q 026765          167 -TTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       167 -~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~~~~i~~~~  230 (233)
                       ...++.+.+||..+.+.+. ....+...+..++|+|++++|+++ ..+++|.+||+.+++++.++.
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence             4678999999997755433 122456678899999999986655 468999999999999998876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.4e-20  Score=148.35  Aligned_cols=207  Identities=10%  Similarity=0.061  Sum_probs=162.2

Q ss_pred             ccccEEEEEECcCCCEEEEEeC-------CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~-------D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ....+..++|+|+++++++++.       ++.|.+||.....  ....  +. ....+..++|+|++..+++++..++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~--~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VTQA--IH-NDLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EEEE--EE-ESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEE--Ee-cCCCcceEEECCCCCEEEEEecCCCEE
Confidence            4567889999999999888774       5689999986422  2222  22 223467789999876677777778999


Q ss_pred             EEEECCCCeeeeeeeecC----------CeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeee-cCceeeEEEEC
Q 026765           92 RLWDARSGKCSQQAELSG----------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRK-FGYEVNEIAWN  158 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~  158 (233)
                      .+||..+++.........          ....++|+|++++++++.  .++.+.+||+.+.+.+.... .+..+..+.|+
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            999999988766655432          146689999999887765  47889999999888877666 45557889999


Q ss_pred             CCCCEEEEEeCCCeEEEEecCCceeeeEEee----ecCceeEEEECCCCCEEEEeeC-CCcEEEEecCCcEEEEeee
Q 026765          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++++.++++..++.+.+||..+++....+..    +...+..++|+|++++++.++. ++.|.+||+.+++.++.+.
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            9999999999999999999998888776654    3445778999999997766665 5999999999998887765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=1.7e-20  Score=146.78  Aligned_cols=202  Identities=13%  Similarity=0.082  Sum_probs=151.7

Q ss_pred             cEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEec---CcCcEEEEEEcCCCCCEEEEEe-----------
Q 026765           22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATAS-----------   86 (233)
Q Consensus        22 ~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~sg~-----------   86 (233)
                      .+..++|+|+++++ ++++.++.|.+||+....  ....+....   |...+..++|+|++. .+++++           
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCCC-EEEEEeccccccccccc
Confidence            47899999999876 555668999999986422  222222221   122567889999865 455554           


Q ss_pred             -CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC----------------
Q 026765           87 -GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG----------------  149 (233)
Q Consensus        87 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------------  149 (233)
                       .++.|.+||+.+++..........+..++|+|++++++++  ++.+.+||+.+.+........                
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence             5799999999988877666655566778999999988887  678999998766544222110                


Q ss_pred             ---------------------------------------------------ceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765          150 ---------------------------------------------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (233)
Q Consensus       150 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  178 (233)
                                                                         ..+..++|+|++++++++  ++.+.+||.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence                                                               013358999999998888  789999999


Q ss_pred             CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+++.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+++++.
T Consensus       268 ~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          268 EKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            98887766653 45678999999999999999999999999999998888753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.1e-21  Score=158.09  Aligned_cols=163  Identities=14%  Similarity=0.228  Sum_probs=124.9

Q ss_pred             CccccEEEEEECcCCCEEE----EEeCCCCEEEEecccCC-----C-Cc-eeeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           18 GHKKKVHSVAWNCTGTKLA----SGSVDQTARVWHIEPHG-----H-GK-VKDIELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~----s~~~D~~v~vW~~~~~~-----~-~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .|.+.|++++|+|++++|+    ||+.|++|+|||+....     . .. .....+.+|...|.+++|+|+++.+|++|+
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4678899999999999999    89999999999986531     0 11 112345679999999999998778999999


Q ss_pred             CCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--------CceeeEEEE
Q 026765           87 GDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------GYEVNEIAW  157 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~  157 (233)
                      .|++|++||++++....... ....+.+++|+|+|++|++|+.|+.|++||++ .+.......        ...+.++.|
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence            99999999999886544333 24567889999999999999999999999998 333222211        127889999


Q ss_pred             CCCCCEEEEE-eCCC------eEEEEecCCc
Q 026765          158 NMTGEMFFLT-TGNG------TVEVLTYPSL  181 (233)
Q Consensus       158 ~~~~~~~~~~-~~~~------~v~~~~~~~~  181 (233)
                      ++++.++++. ..+|      .+++|+++..
T Consensus       249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          249 IGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9988776554 3343      3889998643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=3e-20  Score=145.69  Aligned_cols=197  Identities=12%  Similarity=0.152  Sum_probs=137.0

Q ss_pred             cEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-C
Q 026765           22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-G   99 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~   99 (233)
                      .+..++|+|++++|++++. |+.|.+|++.. .........+. ....+.+++|+|++..+++++..++.|.+||+.+ +
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Ccccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            7889999999998877665 88999999851 11111111222 3346888999998755544444899999999987 5


Q ss_pred             eeee----eeee--cCCeeEEEECCCCCeEEEE-cCCCcEEEEEcCC--Cee--eeeee---cC----ceeeEEEECCCC
Q 026765          100 KCSQ----QAEL--SGENINITYKPDGTHIAVG-NRDDELTILDVRK--FKP--IHRRK---FG----YEVNEIAWNMTG  161 (233)
Q Consensus       100 ~~~~----~~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~---~~----~~~~~~~~~~~~  161 (233)
                      +...    ....  ...+..++|+|++++++++ ..++.+.+||+..  .+.  .....   ..    ..+..++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            4432    1121  2345679999999977655 4789999999853  221  11111   11    235579999999


Q ss_pred             CEEEEEe-CCCeEEEEecC----CceeeeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEecC
Q 026765          162 EMFFLTT-GNGTVEVLTYP----SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS  221 (233)
Q Consensus       162 ~~~~~~~-~~~~v~~~~~~----~~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~  221 (233)
                      ++++++. .++.+.+|+..    ..+.+..+..+.. +..++|+|++++|++++ .++.|.+|+++
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9887655 78999999997    3345555554444 88999999999888877 68999999554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=6.9e-20  Score=144.41  Aligned_cols=205  Identities=17%  Similarity=0.165  Sum_probs=155.4

Q ss_pred             cccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcC---------cEEEEEEcCCCCCEEEEE-eCC
Q 026765           20 KKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---------SVDQLCWDPKHADLIATA-SGD   88 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~l~sg-~~d   88 (233)
                      ...+..++|+|+|+++ ++...++.|.+||.....  ...  .+..+..         .+..++|+|++..+++++ +.+
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE--VKG--RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC--EEE--EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe--eEE--EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            3457789999999965 455568999999986432  122  2322221         268899999876555555 358


Q ss_pred             CeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----CceeeEEEECCCCC
Q 026765           89 KTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GYEVNEIAWNMTGE  162 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~  162 (233)
                      +.|.+||..+++...... .......++|+|++++++++..++.+.+||+.+.+.......     ...+..++|+|+++
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            899999999988777665 334466789999999999999999999999998887765543     23467799999999


Q ss_pred             EEEEEeC-CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEeee
Q 026765          163 MFFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       163 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+++++. ++.+.+||..+++.+..+....  ...++|+|++++++.++ .++.|.+||+.+++.+..+.
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            8777765 5999999998888777666433  36799999999665554 78999999999999887765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=5.7e-20  Score=143.93  Aligned_cols=200  Identities=10%  Similarity=0.088  Sum_probs=145.2

Q ss_pred             EEECcCCCE-EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-ee
Q 026765           26 VAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQ  103 (233)
Q Consensus        26 ~~~~~~~~~-l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~  103 (233)
                      ..|.+++++ +++++.+++|++||+....   . ...+..+...+ .++|+|++..+++++..++.|.+||+.+++. ..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~-~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---I-LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV   77 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCC---E-EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccc---e-eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence            346666655 6788889999999986432   2 12233445556 9999998765666666689999999998876 55


Q ss_pred             eeeecCCeeE-EEECCCCCeEEEEcCCC---cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE-eCCCe-EEEEe
Q 026765          104 QAELSGENIN-ITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGT-VEVLT  177 (233)
Q Consensus       104 ~~~~~~~~~~-~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-v~~~~  177 (233)
                      .......... ++|+|++++++++..++   .+.+||+.+.+.+.....+.....++|+|+|++++++ ..++. +.+|+
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            5555555666 99999999999655553   8999999988887777666677899999999866655 55577 99999


Q ss_pred             cCCceee----eEEeeecCceeEEEECCCCCEEE-EeeCCCcEEEEecCCcEE---EEeee
Q 026765          178 YPSLRPL----DTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLC---VRTFT  230 (233)
Q Consensus       178 ~~~~~~~----~~~~~~~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~~~---i~~~~  230 (233)
                      +.....+    .........+..++|+|+|++|+ ++..++.|++||+.+++.   +.++.
T Consensus       158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~  218 (331)
T 3u4y_A          158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG  218 (331)
T ss_dssp             ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence            8643222    12223445678999999999654 555689999999998877   66554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=4.7e-21  Score=165.47  Aligned_cols=203  Identities=8%  Similarity=0.055  Sum_probs=149.5

Q ss_pred             cccEEEEEECcCCCEEEEEeC-CC-----CEEEEecccCCCCceeeEEEecCc------------------------CcE
Q 026765           20 KKKVHSVAWNCTGTKLASGSV-DQ-----TARVWHIEPHGHGKVKDIELRGHA------------------------DSV   69 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~-D~-----~v~vW~~~~~~~~~~~~~~~~~h~------------------------~~v   69 (233)
                      ...|++++|+|||++|++++. |+     +|++||+....   .. ..+..+.                        ..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ---TR-LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC---EE-EEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc---ee-EccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            457999999999999999998 88     89999986432   11 1222222                        237


Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCC---eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee
Q 026765           70 DQLCWDPKHADLIATASGDKTVRLWDARSG---KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (233)
Q Consensus        70 ~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (233)
                      ..++|+|++. .|++++. +.|.+||+.++   ..............++|+|||++|+.++ ++.|.+||+.+.+.....
T Consensus       112 ~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          112 VDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             CCCEECTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             ceeEECCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            8899999865 5566665 99999999887   4433333335567899999999998877 458999999876654332


Q ss_pred             ecCce-----------------eeEEEECCCCCEEEEEeCCC---------------------------------eEEEE
Q 026765          147 KFGYE-----------------VNEIAWNMTGEMFFLTTGNG---------------------------------TVEVL  176 (233)
Q Consensus       147 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~---------------------------------~v~~~  176 (233)
                      .....                 +..+.|+|+|+.++.++.++                                 .+.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            22111                 46799999999999887654                                 78888


Q ss_pred             ecCC-ceeeeEEe--eecCceeEEEECCCCCEEEEeeC-----CCcEEEEecCCcEEEEeee
Q 026765          177 TYPS-LRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSA-----DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       177 ~~~~-~~~~~~~~--~~~~~v~~i~~~p~~~~las~s~-----dg~v~iwd~~~~~~i~~~~  230 (233)
                      |..+ ++......  .|...+..++| |+|++|+.++.     +..|++||+.++++.+.+.
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence            8877 65443322  36678899999 99999987664     5789999999988776654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.1e-20  Score=157.45  Aligned_cols=202  Identities=10%  Similarity=-0.007  Sum_probs=145.3

Q ss_pred             ccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeC---CCeEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG---DKTVRL   93 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~---d~~i~i   93 (233)
                      +..+|++++|+|||++||+++. |++++||+++..   .  ...+..|. ..+..++|+|+  +++++++.   +...++
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---E--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---E--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---C--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEE
Confidence            3668999999999999999887 999999998431   1  22445555 58999999987  57777765   556677


Q ss_pred             EECCC--CeeeeeeeecCCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765           94 WDARS--GKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        94 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      |.+..  ................+|+|+++.+ ++...++.+.+||+.+.+.........  ..+.|+|+|+.++.++.+
T Consensus        93 ~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           93 FKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             EEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEE
T ss_pred             EEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEc
Confidence            65543  2111222222223356788888643 333444556699998776544333222  788999999999977765


Q ss_pred             ----CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC--cEEEEecCCcEEEEeeec
Q 026765          171 ----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       171 ----~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg--~v~iwd~~~~~~i~~~~~  231 (233)
                          +.+++||..+++. ..+..|...+..++|+|||++|+++..++  .|++||++.+++. .+..
T Consensus       171 ~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             ETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence                7899999877664 36777888899999999999999888888  8999999988776 4443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.8e-19  Score=140.99  Aligned_cols=190  Identities=12%  Similarity=0.137  Sum_probs=144.9

Q ss_pred             CEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcC-cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-
Q 026765           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHAD-SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-  109 (233)
Q Consensus        33 ~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-  109 (233)
                      +++++++.|++|++||+....  ...  .+. ++.. .+..++|+|++..+++++..++.|.+||+.+++....+.... 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~--~~~--~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA--VDK--VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--EEE--EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCc--EEE--EEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            478999999999999986421  122  222 2222 477899999876677777888999999999888766555433 


Q ss_pred             -----CeeEEEECCCCCeEEEEc------------CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCe
Q 026765          110 -----ENINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus       110 -----~~~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                           .+..++|+|++++++++.            .++.+.+||+.+.+.......+..+..+.|+|++++++++  ++.
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSS
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCe
Confidence                 456799999999988875            5789999999888777666666678889999999988887  678


Q ss_pred             EEEEecCCceeeeEEee---------------------------------------------------------------
Q 026765          173 VEVLTYPSLRPLDTVVA---------------------------------------------------------------  189 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~---------------------------------------------------------------  189 (233)
                      +.+||..+++....+..                                                               
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence            99999876655433221                                                               


Q ss_pred             ---ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          190 ---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       190 ---~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                         +...+.+++|+|++++++++  ++.|.+||+.+++.++.+.
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  277 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec
Confidence               12234568999999999888  7999999999998887764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=6.7e-21  Score=164.00  Aligned_cols=203  Identities=10%  Similarity=0.071  Sum_probs=147.7

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC---cEEEEEEcCCCCCEEEEEeCC---------
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGD---------   88 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~sg~~d---------   88 (233)
                      ..+.+++|+|+|+++++ +.|++|++||+.....    ...+.+|..   .|.+++|+|++ +.|++++.+         
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE----EEEeccccccccccceEEECCCC-CEEEEEecCccceeecce
Confidence            34678999999998876 7899999999975321    223455554   48999999986 456677654         


Q ss_pred             CeEEEEECCCCeeeeeeeecC---CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-c--------------
Q 026765           89 KTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-Y--------------  150 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~--------------  150 (233)
                      +.+.+||+.+++.........   .+..++|+|||++|+.++. +.|.+||+.+.+.......+ .              
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            788899999887522211111   2456899999999998876 68999999876554332221 1              


Q ss_pred             ----eeeEEEECCCCCEEEEEeCCC----------------------------------eEEEEecCCceeeeEEeee--
Q 026765          151 ----EVNEIAWNMTGEMFFLTTGNG----------------------------------TVEVLTYPSLRPLDTVVAH--  190 (233)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~~~~~~~~~~~~~--  190 (233)
                          .+..+.|+|+|+.++.++.++                                  .+.+||..+.+....+..+  
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                126799999999998876442                                  7889998877654555543  


Q ss_pred             ----cCceeEEEECCCCCEEEEeeC----CCcEEEEecCCcEEEEeee
Q 026765          191 ----TAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       191 ----~~~v~~i~~~p~~~~las~s~----dg~v~iwd~~~~~~i~~~~  230 (233)
                          ...+..++|+|||++|++.+.    +..|++||+.++++.+.+.
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~  297 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence                557889999999999877653    3679999999988776553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.9e-19  Score=141.57  Aligned_cols=199  Identities=9%  Similarity=0.068  Sum_probs=143.8

Q ss_pred             cEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecC-----cCcEEEEEEcCCCCCEEEEEeCC-------
Q 026765           22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGD-------   88 (233)
Q Consensus        22 ~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~sg~~d-------   88 (233)
                      .+..++|+|+++++ +++..++.|.+||+....  ....... ++     ...+..++|+|++. .+++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANL-SSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEES-CCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--EEEEEEc-ccccccccccccceEECCCCC-EEEEEcccccccccc
Confidence            57899999999865 555678999999986421  1222222 12     23367889999865 55566644       


Q ss_pred             -----CeEEEEECCCCee---eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc----------
Q 026765           89 -----KTVRLWDARSGKC---SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY----------  150 (233)
Q Consensus        89 -----~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------  150 (233)
                           +.|.+||+.+++.   .........+.+++|+|+++ +++++.  .+.+||+.+.+.+.......          
T Consensus       120 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  196 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPD  196 (349)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred             cccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcc
Confidence                 8999999987542   22333344566788999999 665543  49999987766544332211          


Q ss_pred             -----------------------------------------------------------eeeEEEECC-CCCEEEEEeCC
Q 026765          151 -----------------------------------------------------------EVNEIAWNM-TGEMFFLTTGN  170 (233)
Q Consensus       151 -----------------------------------------------------------~~~~~~~~~-~~~~~~~~~~~  170 (233)
                                                                                 .+..+.++| ++++++++  +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~  274 (349)
T 1jmx_B          197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L  274 (349)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E
T ss_pred             ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c
Confidence                                                                       234566779 99988888  8


Q ss_pred             CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+.+||..+++.+..+.. ...+.+++|+|++++|++++.++.|++||+++++.+++++
T Consensus       275 ~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          275 NRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             SEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            8999999998887776653 3457899999999998888889999999999999988875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=2e-19  Score=141.43  Aligned_cols=197  Identities=9%  Similarity=0.021  Sum_probs=144.1

Q ss_pred             EEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      .+++++++.++++++.|++|++||+....  ...  .+..+. ..+..++|+|++..+++++..++.|.+||+.+++...
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~--~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT--VYK--SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE--EEE--EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc--EEE--EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            45678888999999999999999986421  112  233222 2577899999876566777789999999999888766


Q ss_pred             eeeecCC-------eeEEEECCCCCeEEEEcCC------------CcEEEEEcCCCe---eeeeeecCceeeEEEECCCC
Q 026765          104 QAELSGE-------NINITYKPDGTHIAVGNRD------------DELTILDVRKFK---PIHRRKFGYEVNEIAWNMTG  161 (233)
Q Consensus       104 ~~~~~~~-------~~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~  161 (233)
                      .......       +..++|+|++++++++..+            +.+.+||+.+.+   .+........+.+++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            5554322       4578999999999988865            899999997733   22333334457888999999


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeEEeeec--------------------------------------------------
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHT--------------------------------------------------  191 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------------------------------  191 (233)
                      + +++++  +.+.+||..+++....+..+.                                                  
T Consensus       160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 55543  349999987776554443221                                                  


Q ss_pred             ------------------CceeEEEECC-CCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          192 ------------------AGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       192 ------------------~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                                        ..+..++++| ++++++++  ++.|.+||+.+++.++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  292 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN  292 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence                              1345677889 99998888  8899999999998887764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=1.4e-18  Score=137.75  Aligned_cols=200  Identities=13%  Similarity=0.183  Sum_probs=136.6

Q ss_pred             ccccEEEEEECcCCCEEEEEeCC----CCEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVD----QTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D----~~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      |......++|+|+|++|++++.+    +.|.+|+++... +.... .....+......+++  ++..++++...++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            56677889999999999999886    799999987532 22221 233345556677777  44444444446889999


Q ss_pred             EECCCCeeeee----eeec-----------CCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCee------e--------
Q 026765           94 WDARSGKCSQQ----AELS-----------GENINITYKPDGTHIAVGN-RDDELTILDVRKFKP------I--------  143 (233)
Q Consensus        94 wd~~~~~~~~~----~~~~-----------~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------~--------  143 (233)
                      |++........    ....           .....++|+|++++++++. .++.+.+|++.....      +        
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            99975432211    1111           1125689999999776554 578999998864331      1        


Q ss_pred             eeeecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCcee--eeEEe---eecCceeEEEECCCCCEEEEeeC--CCcE
Q 026765          144 HRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRP--LDTVV---AHTAGCYCIAIDPMGRYFAVGSA--DSLV  215 (233)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~~---~~~~~v~~i~~~p~~~~las~s~--dg~v  215 (233)
                      .....+..+..++|+|+|+++++++ .++.+.+|+..+++.  +..+.   .+...+..++|+|+|++|+++..  ++.|
T Consensus       205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            1122344577899999999887777 689999999876543  22222   23345679999999999876665  4899


Q ss_pred             EEEecC
Q 026765          216 SLWDIS  221 (233)
Q Consensus       216 ~iwd~~  221 (233)
                      .+|+++
T Consensus       285 ~v~~~~  290 (361)
T 3scy_A          285 AIFKVD  290 (361)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=6.6e-19  Score=138.94  Aligned_cols=209  Identities=13%  Similarity=0.197  Sum_probs=140.2

Q ss_pred             CccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe-CCCeEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTVRL   93 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~-~d~~i~i   93 (233)
                      .+......++|+|+|+ |++++.   ++.|++|++.....  .....+..+...+..++|+|++. .|++++ .++.|.+
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--HKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--EEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--EEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEE
Confidence            4566778899999999 555544   68999999854211  11123345677888999999875 445555 7899999


Q ss_pred             EECCC-Ceee--eeeeecC----------CeeEEEECCCCCeEEEEcCCCcEEEEEcC-CCeeee--eee--cCceeeEE
Q 026765           94 WDARS-GKCS--QQAELSG----------ENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIH--RRK--FGYEVNEI  155 (233)
Q Consensus        94 wd~~~-~~~~--~~~~~~~----------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~--~~~~~~~~  155 (233)
                      ||+.. +...  ......+          .+..++|+|+++.+++...++.+.+||+. ..+...  ...  .+..+..+
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            99953 3322  2221111          24569999999966666678899999997 333221  111  23356789


Q ss_pred             EECCCCCEEEE-EeCCCeEEEEecCC--cee--eeEEeeec------CceeEEEECCCCCEE-EEeeCCCcEEEEecC--
Q 026765          156 AWNMTGEMFFL-TTGNGTVEVLTYPS--LRP--LDTVVAHT------AGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--  221 (233)
Q Consensus       156 ~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~--~~~~~~~~------~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~--  221 (233)
                      +|+|+|+++++ ...++.+.+|++..  ++.  ...+....      ..+..++|+|+|++| ++...++.|.+||+.  
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            99999996666 45688999998763  332  22222222      347889999999987 566678999999997  


Q ss_pred             -CcEEEEeee
Q 026765          222 -EMLCVRTFT  230 (233)
Q Consensus       222 -~~~~i~~~~  230 (233)
                       ....+..+.
T Consensus       273 g~~~~~~~~~  282 (347)
T 3hfq_A          273 GHLTLIQQIS  282 (347)
T ss_dssp             GCEEEEEEEE
T ss_pred             CcEEEeEEEe
Confidence             334555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=1.9e-19  Score=137.93  Aligned_cols=194  Identities=15%  Similarity=0.130  Sum_probs=140.8

Q ss_pred             eeCc-cccEEEEEECcCCCEEEEEe--CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           16 YTGH-KKKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        16 ~~~H-~~~V~~~~~~~~~~~l~s~~--~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +.+| ...|.+++|+|++++|++++  .|+.++||.++.....   ...+..+ ..+..++|+|++..++++++.|+.++
T Consensus        79 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           79 DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT---PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC---CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc---eEEeecC-CCccceEECCCCCEEEEEECCCCceE
Confidence            3444 47889999999999999999  4578888887643221   1233333 35888999999766666888999999


Q ss_pred             EEECC--CCeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcC-CCeeeeee-ecCceeeEEEECCCCCEEEEE
Q 026765           93 LWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVR-KFKPIHRR-KFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        93 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +|+++  ++..............++|+|++++++.++ .++.+.+|++. ........ .....+..+.|+|++++++.+
T Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence            99853  344333233344567899999999888665 58889999875 23333222 234567889999999999888


Q ss_pred             eCC-----------CeEEEEecCCcee--eeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765          168 TGN-----------GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (233)
Q Consensus       168 ~~~-----------~~v~~~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg  213 (233)
                      +.+           +.+.+|+..+.+.  +..+.+|...+.+++|+|++++|++++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            765           5699999876644  444557888899999999999998887664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=1.3e-19  Score=156.47  Aligned_cols=201  Identities=11%  Similarity=0.132  Sum_probs=149.2

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      .|.+++|+|||++|++++. +.|++||+........  ..+..|...+..++|+|++. .|++++ ++.|.+||+.+++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCE
Confidence            4889999999999999986 9999999875310011  13556778899999999864 566665 56899999988775


Q ss_pred             eeeeeecCC-----------------eeEEEECCCCCeEEEEcCCC---------------------------------c
Q 026765          102 SQQAELSGE-----------------NINITYKPDGTHIAVGNRDD---------------------------------E  131 (233)
Q Consensus       102 ~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~d~---------------------------------~  131 (233)
                      .........                 ...++|+|||++|+.++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            543322221                 25689999999999887665                                 7


Q ss_pred             EEEEEcCC-Ceeeeee---ecCceeeEEEECCCCCEEEEEeC-----CCeEEEEecCCceeeeEEeeecC----ceeEEE
Q 026765          132 LTILDVRK-FKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYPSLRPLDTVVAHTA----GCYCIA  198 (233)
Q Consensus       132 i~i~d~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~----~v~~i~  198 (233)
                      |.+||+.+ .+.....   .....+..++| |+|+.++....     +..+.+||..+++....+..+..    .+..++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            88899877 6543322   13456889999 99999987754     56899999988877666665553    346899


Q ss_pred             ECCCCCEEEEeeCCCcEEEEecC-CcEEEEee
Q 026765          199 IDPMGRYFAVGSADSLVSLWDIS-EMLCVRTF  229 (233)
Q Consensus       199 ~~p~~~~las~s~dg~v~iwd~~-~~~~i~~~  229 (233)
                      |+|+|+++++++.||.++||.++ ++. ++.+
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l  374 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAAL  374 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSC-EEES
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCC-eeee
Confidence            99999999999999988888775 343 4444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.4e-19  Score=155.47  Aligned_cols=201  Identities=10%  Similarity=0.061  Sum_probs=146.9

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC--
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--   98 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~--   98 (233)
                      ..|++++|+|+ +.++.+ .|++|++||+...   .  ...+..+...+..++|+|++. .|++ ..|+.|.+||+.+  
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---~--~~~l~~~~~~~~~~~~SpdG~-~la~-~~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---K--VTYLFDTNEETASLDFSPVGD-RVAY-VRNHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---E--EEEEECCTTCCTTCEECTTSS-EEEE-EETTEEEEEECBCTT
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---c--eEEccCCcccccCCcCCCCCC-EEEE-EECCeEEEEecCccc
Confidence            56999999999 665555 4699999998642   1  224456677788899999875 5555 3689999999988  


Q ss_pred             ---CeeeeeeeecCC---------------eeEEEECCCCCeEEEEc---------------------------------
Q 026765           99 ---GKCSQQAELSGE---------------NINITYKPDGTHIAVGN---------------------------------  127 (233)
Q Consensus        99 ---~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~---------------------------------  127 (233)
                         ++..........               ...++|+|||++|++++                                 
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               665443322222               35789999999999887                                 


Q ss_pred             CCCcEEEEEcCCCeeeeee---ecCceeeEEEECCCCCEEEEEeCCC-----eEEEEecCCceeeeEEe-ee-cC---ce
Q 026765          128 RDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGNG-----TVEVLTYPSLRPLDTVV-AH-TA---GC  194 (233)
Q Consensus       128 ~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~-~~-~~---~v  194 (233)
                      .+..+.+||+.+.+.....   .....+..++|+|+|+.+++++.++     .+.+||..+++....+. .+ ..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            3467999999877654332   2234688999999999999877665     89999998873333332 22 22   24


Q ss_pred             eEEEECC--CCCEEEEeeCCCcEEEEecC-CcEEEEeee
Q 026765          195 YCIAIDP--MGRYFAVGSADSLVSLWDIS-EMLCVRTFT  230 (233)
Q Consensus       195 ~~i~~~p--~~~~las~s~dg~v~iwd~~-~~~~i~~~~  230 (233)
                      .+++|+|  +|+++++++.|+.++||+++ ++..++.+.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            6789999  99999999999999999886 566665553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=1.5e-19  Score=152.28  Aligned_cols=203  Identities=10%  Similarity=-0.003  Sum_probs=150.6

Q ss_pred             eeeeCcc-ccEEEEEECcCCCEEEEEeC---CCCEEEEeccc--CCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765           14 REYTGHK-KKVHSVAWNCTGTKLASGSV---DQTARVWHIEP--HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus        14 ~~~~~H~-~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      +.+..|. ..|..++|+|+ +.+++++.   +...++|.++.  .+..  .  .+... ..+...+|+|++..++++.+.
T Consensus        57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~--~--~l~~~-~~~~~~~~s~dg~~~~~~s~~  130 (582)
T 3o4h_A           57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE--Q--RLEAV-KPMRILSGVDTGEAVVFTGAT  130 (582)
T ss_dssp             EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC--E--ECTTS-CSBEEEEEEECSSCEEEEEEC
T ss_pred             EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc--c--cccCC-CCceeeeeCCCCCeEEEEecC
Confidence            3445555 68999999999 77887775   66778887764  2221  1  22222 234456888887665555555


Q ss_pred             CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC----CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCE
Q 026765           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (233)
                      ++.+.+||+.+++.........  ..++|+|||++++.++.+    ..|.+||+.+.+..........+...+|+|||+.
T Consensus       131 ~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          131 EDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV  208 (582)
T ss_dssp             SSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCE
T ss_pred             CCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCE
Confidence            5556699999887655443333  778999999999987766    6799999887665543344456789999999999


Q ss_pred             EEEEeCCC--eEEEEecCCceeeeEEeeecCceeEEE--------ECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          164 FFLTTGNG--TVEVLTYPSLRPLDTVVAHTAGCYCIA--------IDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       164 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~--------~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      ++.+..++  .+.+||..+++.. .+..|...+..++        |+|+|.++++++.|+.++||++  +++++
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             EEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence            99888888  8999999887776 6667777777777        9999988999999999999999  66553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=1.5e-17  Score=131.82  Aligned_cols=207  Identities=12%  Similarity=0.167  Sum_probs=139.3

Q ss_pred             CccccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCC-ceee-EEEec--------CcCcEEEEEEcCCCCCEEEEEe
Q 026765           18 GHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHG-KVKD-IELRG--------HADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~-~~~~-~~~~~--------h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      .+......+++  ++++|++++ .+++|.+|++...... .... ....+        +...+.+++|+|++..+++++.
T Consensus        97 ~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  174 (361)
T 3scy_A           97 TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL  174 (361)
T ss_dssp             CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence            34556677777  788877776 5889999998643211 1111 11111        1234688999998765666666


Q ss_pred             CCCeEEEEECCCCee-------e-----ee--eeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeee--eeeec-
Q 026765           87 GDKTVRLWDARSGKC-------S-----QQ--AELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPI--HRRKF-  148 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~-------~-----~~--~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--~~~~~-  148 (233)
                      .++.|.+|++.....       .     ..  .........++|+|++++++++. .++.+.+||+.+.+..  ..... 
T Consensus       175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~  254 (361)
T 3scy_A          175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD  254 (361)
T ss_dssp             TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC
T ss_pred             CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC
Confidence            789999998875431       1     11  11233456799999999887766 6889999998765432  21211 


Q ss_pred             ---CceeeEEEECCCCCEEEEEeC--CCeEEEEecC--Cce--eeeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEE
Q 026765          149 ---GYEVNEIAWNMTGEMFFLTTG--NGTVEVLTYP--SLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLW  218 (233)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iw  218 (233)
                         ......++|+|+|++++++..  ++.+.+|+..  +++  .+..+.. ...+..++|+|+|++|++++ .++.|.+|
T Consensus       255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence               123568999999999877665  4899999985  333  3444444 55678999999999988887 67899996


Q ss_pred             e--cCCcEEEE
Q 026765          219 D--ISEMLCVR  227 (233)
Q Consensus       219 d--~~~~~~i~  227 (233)
                      +  .++++...
T Consensus       334 ~~d~~~g~~~~  344 (361)
T 3scy_A          334 ERDQATGLLTD  344 (361)
T ss_dssp             EECTTTCCEEE
T ss_pred             EEECCCCcEee
Confidence            5  45665543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=6.1e-19  Score=157.72  Aligned_cols=204  Identities=12%  Similarity=0.065  Sum_probs=154.9

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-----------CcCcEEEEEEc-CCCCCEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-----------HADSVDQLCWD-PKHADLI   82 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~-~~~~~~l   82 (233)
                      .+..|. .+..++|+|+|++|+++. |+.|.+|++..   ..+.  .+.+           |...+..++|+ |++.. |
T Consensus       240 ~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~---~~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-l  311 (1045)
T 1k32_A          240 KHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT---EKIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-I  311 (1045)
T ss_dssp             ECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTT---CCEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-E
T ss_pred             EecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCc---eEee--eeccCcccccccccccccccceeeecCCCCCE-E
Confidence            444454 466789999999999884 89999999832   1121  2333           44578999999 98754 4


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEE-EEEcCCCeeeeeeecCceeeEEEECCC
Q 026765           83 ATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELT-ILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (233)
Q Consensus        83 ~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~  160 (233)
                      ++++ ++.+.+|++..+.......... ....++|+ +++.++.++.+..+. +||+...+..........+..++|+|+
T Consensus       312 a~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpD  389 (1045)
T 1k32_A          312 AFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN  389 (1045)
T ss_dssp             EEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTT
T ss_pred             EEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCC
Confidence            5555 7899999998776543222233 45568899 999999888887888 889876554332233356889999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC----------cEEEEecCCcEEEEee
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----------LVSLWDISEMLCVRTF  229 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg----------~v~iwd~~~~~~i~~~  229 (233)
                      |+.++.++.++.+++||..+++....+.+|...+.+++|+|+|++|++++.++          .|++||+..++ ++.+
T Consensus       390 G~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l  467 (1045)
T 1k32_A          390 GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA  467 (1045)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC
T ss_pred             CCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe
Confidence            99999999999999999998887766668888899999999999999887654          89999999887 4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.2e-18  Score=155.93  Aligned_cols=196  Identities=13%  Similarity=0.078  Sum_probs=156.5

Q ss_pred             ccccEEEEEEC-cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC-cEEEEEEcCCCCCEEEEEeCCCeEE-EEE
Q 026765           19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-SVDQLCWDPKHADLIATASGDKTVR-LWD   95 (233)
Q Consensus        19 H~~~V~~~~~~-~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sg~~d~~i~-iwd   95 (233)
                      |.+.+.+++|+ |+|++|++++ ++.|.+|++...   .  ...+..|.. .+..++|+ ++ ..|++++.+..+. +||
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~---~--~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d  365 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT---Y--VLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYD  365 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS---B--EEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC---c--eEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEE
Confidence            56679999999 9999999988 889999987532   1  223556777 89999999 65 5566777788888 999


Q ss_pred             CCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCCEEEEEeCCC---
Q 026765           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNG---  171 (233)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---  171 (233)
                      +..++.............++|+|||++|++++.++.+.+||+.+.+..... .+...+..++|+|+|++++.++.++   
T Consensus       366 ~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~  445 (1045)
T 1k32_A          366 YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE  445 (1045)
T ss_dssp             TTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred             CCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence            987765433322245667999999999999999999999999887665544 3445678899999999998886644   


Q ss_pred             -------eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          172 -------TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       172 -------~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                             .+++||..+++ ...+..|...+.+++|+|+|++|+.++.++..++|+....
T Consensus       446 ~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          446 TDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             TCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence                   89999998876 5667778888999999999999999999999999987544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=154.97  Aligned_cols=198  Identities=14%  Similarity=0.150  Sum_probs=138.7

Q ss_pred             EEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC---cEEEEEEcCCCCCEEEEEeC---------CCeEE
Q 026765           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASG---------DKTVR   92 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~sg~~---------d~~i~   92 (233)
                      .++|+|+|+++++ +.|++|++||+....    ....+.+|..   .+.+++|+|++. .|++++.         ++.|+
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ----SYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCC----EEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCc----EEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEE
Confidence            7899999965555 469999999986532    1222333433   388999999865 5566655         78999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc-------------------eee
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-------------------EVN  153 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------~~~  153 (233)
                      +||+.+++.............++|+|||+.|+.+. ++.|.+||+.+.+.......+.                   ...
T Consensus        94 ~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           94 IYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             EEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             EEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            99999887632122334566799999999999875 7799999997765432221111                   114


Q ss_pred             EEEECCCCCEEEEEeCCC----------------------------------eEEEEecCCceee--------eEEeeec
Q 026765          154 EIAWNMTGEMFFLTTGNG----------------------------------TVEVLTYPSLRPL--------DTVVAHT  191 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~~~~~~~--------~~~~~~~  191 (233)
                      .+.|+|||+.++.++.+.                                  .+.+||..+++..        ..+.+|.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            799999999999877542                                  7788998776542        1123467


Q ss_pred             CceeEEEECCCCCEEEEeeCC----CcEEEEe----cCCcEEEEee
Q 026765          192 AGCYCIAIDPMGRYFAVGSAD----SLVSLWD----ISEMLCVRTF  229 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~s~d----g~v~iwd----~~~~~~i~~~  229 (233)
                      ..+..++|+||++++++....    ..|.+||    +.++++.+.+
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence            778999999998877775432    3488999    8777765544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=2e-18  Score=148.54  Aligned_cols=202  Identities=10%  Similarity=0.008  Sum_probs=139.8

Q ss_pred             eeeeCccc---cEEEEEECcCCCEEEEEeCC---------CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCE
Q 026765           14 REYTGHKK---KVHSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL   81 (233)
Q Consensus        14 ~~~~~H~~---~V~~~~~~~~~~~l~s~~~D---------~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   81 (233)
                      ..+.+|..   .|.+++|||||++|++++.|         +.+.+||+.....  .......+|...+..++|+|++. .
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~-~  127 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQ-Q  127 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSSTT-C
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--EeccCCccccccccccEECCCCC-E
Confidence            34455554   49999999999999999875         6778999875321  11111123445588899999875 4


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeeecC-C------------------eeEEEECCCCCeEEEEcCCC------------
Q 026765           82 IATASGDKTVRLWDARSGKCSQQAELSG-E------------------NINITYKPDGTHIAVGNRDD------------  130 (233)
Q Consensus        82 l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~~~~~d~------------  130 (233)
                      |++++. +.|.+||+.+++......... .                  ...++|+|||++|+.++.++            
T Consensus       128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence            556654 799999998876554333211 1                  15699999999999877543            


Q ss_pred             ----------------------cEEEEEcCCCeeeeeeec-------CceeeEEEECCCCCEEEEEeC----CCeEEEEe
Q 026765          131 ----------------------ELTILDVRKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLTTG----NGTVEVLT  177 (233)
Q Consensus       131 ----------------------~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~  177 (233)
                                            .+.+||+.+.+.......       ...+..++|+|+|++++....    +..+.+||
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence                                  688999877654333221       346788999999998866643    35788999


Q ss_pred             cCCceeeeEEeee-cCcee----EEEECCCCCEEEE--eeCCC------cEEEEe
Q 026765          178 YPSLRPLDTVVAH-TAGCY----CIAIDPMGRYFAV--GSADS------LVSLWD  219 (233)
Q Consensus       178 ~~~~~~~~~~~~~-~~~v~----~i~~~p~~~~las--~s~dg------~v~iwd  219 (233)
                      ..+++....+..+ ...+.    .++|+|+|+.|+.  +..|+      .|.+||
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            8887766555443 33333    7899999997775  45677      577777

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=2.1e-18  Score=148.24  Aligned_cols=192  Identities=14%  Similarity=0.099  Sum_probs=138.9

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-----------------CcEEEEEEcCCCCCEEEEE
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----------------DSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~~l~sg   85 (233)
                      +..+.|.  |+.+++++.|+ | +||+.+.... ..  .+..|.                 ..|.+++|+|+ +.++++ 
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~-~~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-   98 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSA-QT--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-   98 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC--------C--EEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEe-eE--EeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence            4557887  77888888888 8 9998753320 01  112222                 46999999998 555544 


Q ss_pred             eCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-----CeeeeeeecCce---------
Q 026765           86 SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYE---------  151 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~---------  151 (233)
                       .++.|++||+.+++.............++|+|||++|+.+ .++.|.+||+.+     .+..........         
T Consensus        99 -~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A           99 -TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             -ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             -ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence             4599999999988765544444556678999999999885 678999999987     554432222222         


Q ss_pred             ------eeEEEECCCCCEEEEEe---------------------------------CCCeEEEEecCCceeeeEEe--ee
Q 026765          152 ------VNEIAWNMTGEMFFLTT---------------------------------GNGTVEVLTYPSLRPLDTVV--AH  190 (233)
Q Consensus       152 ------~~~~~~~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~~~~~--~~  190 (233)
                            +..+.|+|+|++++.++                                 .+..+.+||..+++......  .|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  47899999999999887                                 45789999998776543332  45


Q ss_pred             cCceeEEEECCCCCEEEEeeCCC-----cEEEEecCCcEE
Q 026765          191 TAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLC  225 (233)
Q Consensus       191 ~~~v~~i~~~p~~~~las~s~dg-----~v~iwd~~~~~~  225 (233)
                      ...+.+++|+|+|++|++++.|+     .|++||+.+++.
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~  296 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF  296 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence            67789999999999999988776     899999998833

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=3.3e-17  Score=130.38  Aligned_cols=204  Identities=7%  Similarity=0.053  Sum_probs=138.1

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCcee-eEEEecCcCcEEEEEEcCCCCC-EEEEEe----------
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHAD-LIATAS----------   86 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~-~l~sg~----------   86 (233)
                      +...+..++|+|+|++|++++.+ .|.+|++....  ... ......+ .....++|+|++.. ++++++          
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            33467889999999999999988 99999986211  221 1122211 22445789998754 345553          


Q ss_pred             ---CCCeEEEEECC-CCeeeeeee-----ecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcC-CCeee--eeee---cCc
Q 026765           87 ---GDKTVRLWDAR-SGKCSQQAE-----LSGENINITYKPDGTHIAVGN-RDDELTILDVR-KFKPI--HRRK---FGY  150 (233)
Q Consensus        87 ---~d~~i~iwd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~--~~~~---~~~  150 (233)
                         .++.+.+|++. .++......     ....+..++|+|+|++++++. .++.|.+||+. +.+..  ....   .+.
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence               68999999997 355433322     123566799999999888765 46789999997 55432  2222   144


Q ss_pred             eeeEEEECCCCCEEEEEeC-CCeEEEEecC--Cceee---eEEe-------eecC------ceeEEE-ECCCCCEEEEee
Q 026765          151 EVNEIAWNMTGEMFFLTTG-NGTVEVLTYP--SLRPL---DTVV-------AHTA------GCYCIA-IDPMGRYFAVGS  210 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~---~~~~-------~~~~------~v~~i~-~~p~~~~las~s  210 (233)
                      .+..++|+|+|++++++.. ++.+.+|+.+  +++..   ..+.       +|..      .+..++ |+|+|++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            5888999999999888765 6899999765  34332   1121       1222      478899 999999987766


Q ss_pred             CCC------cEEEEecC-CcEEE
Q 026765          211 ADS------LVSLWDIS-EMLCV  226 (233)
Q Consensus       211 ~dg------~v~iwd~~-~~~~i  226 (233)
                      .+.      .|.+|+++ +++..
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEE
T ss_pred             CCCCCCCCCeEEEEEECCCCCEE
Confidence            432      89999996 56543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=4.3e-17  Score=129.68  Aligned_cols=200  Identities=11%  Similarity=0.167  Sum_probs=135.0

Q ss_pred             EEEEEECcCCCE--EEEEe-------------CCCCEEEEecccCCCCceeeEEEe--cCcCcEEEEEEcCCCCCEEEEE
Q 026765           23 VHSVAWNCTGTK--LASGS-------------VDQTARVWHIEPHGHGKVKDIELR--GHADSVDQLCWDPKHADLIATA   85 (233)
Q Consensus        23 V~~~~~~~~~~~--l~s~~-------------~D~~v~vW~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~sg   85 (233)
                      ...++|+|+|++  +++++             .++++++|+++.... ........  .+...+..++|+|++..++++.
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            456889999994  55664             689999999864221 11111111  2456789999999875444343


Q ss_pred             eCCCeEEEEECC-CCeeee--eeee---cCCeeEEEECCCCCeEEEEcC-CCcEEEEEcC--CCeee---eeee---cC-
Q 026765           86 SGDKTVRLWDAR-SGKCSQ--QAEL---SGENINITYKPDGTHIAVGNR-DDELTILDVR--KFKPI---HRRK---FG-  149 (233)
Q Consensus        86 ~~d~~i~iwd~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~---~~~~---~~-  149 (233)
                      ..++.|.+||+. +++...  ....   ...+..++|+|+|++++++.. ++.+.+|++.  +.+..   ....   .+ 
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            457899999998 665432  2221   234667999999999887765 6789999764  33321   1111   11 


Q ss_pred             ---c-------eeeEEE-ECCCCCEEEEEeCC-C-----eEEEEecC-Cceeee---EEeeecCceeEEEECC---CCCE
Q 026765          150 ---Y-------EVNEIA-WNMTGEMFFLTTGN-G-----TVEVLTYP-SLRPLD---TVVAHTAGCYCIAIDP---MGRY  205 (233)
Q Consensus       150 ---~-------~~~~~~-~~~~~~~~~~~~~~-~-----~v~~~~~~-~~~~~~---~~~~~~~~v~~i~~~p---~~~~  205 (233)
                         .       .+..++ |+|+|++++++..+ +     .+.+|+.. +++...   .+..+...+..++|+|   +|++
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~  323 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence               1       477899 99999998776543 2     89999985 444332   1223455677899999   8999


Q ss_pred             EEEeeCC-CcEEEEecCCc
Q 026765          206 FAVGSAD-SLVSLWDISEM  223 (233)
Q Consensus       206 las~s~d-g~v~iwd~~~~  223 (233)
                      |++++.+ +.|+||+++..
T Consensus       324 l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          324 MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSSCEEEEEEEETT
T ss_pred             EEEEEcCCCeEEEEEEchh
Confidence            9988865 89999998755

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=143.42  Aligned_cols=195  Identities=12%  Similarity=0.116  Sum_probs=132.4

Q ss_pred             EEEEEECcCCCEEEEEeC---------CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           23 VHSVAWNCTGTKLASGSV---------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~---------D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      |.+++|||||++|++++.         |++|++||+.....  .....+   ...+..++|+|++.. |+++. ++.|++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~--~~~~~l---~~~~~~~~~SPDG~~-la~~~-~~~i~~  134 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF--VRGNEL---PRPIQYLCWSPVGSK-LAYVY-QNNIYL  134 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE--CCSSCC---CSSBCCEEECSSTTC-EEEEE-TTEEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc--ccceec---CcccccceECCCCCE-EEEEE-CCeEEE
Confidence            899999999999999876         79999999864321  000111   246888999999765 55554 789999


Q ss_pred             EECCCCeeeeeeeecC-------------------CeeEEEECCCCCeEEEEcCCC------------------------
Q 026765           94 WDARSGKCSQQAELSG-------------------ENINITYKPDGTHIAVGNRDD------------------------  130 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~d~------------------------  130 (233)
                      ||+.+++..+......                   ....++|+|||++|+.++.|.                        
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence            9998876543221111                   113699999999999887552                        


Q ss_pred             ----------cEEEEEcCCCeee--eee-------ecCceeeEEEECCCCCEEEEEeCC----CeEEEEe----cCCcee
Q 026765          131 ----------ELTILDVRKFKPI--HRR-------KFGYEVNEIAWNMTGEMFFLTTGN----GTVEVLT----YPSLRP  183 (233)
Q Consensus       131 ----------~i~i~d~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~----~~~~~~  183 (233)
                                .+.+||+.+.+..  ...       .....+..++|+|+++.++.....    ..+.+||    ..+++.
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence                      6789998775532  011       123457899999998766664322    2477888    666665


Q ss_pred             eeEE----eeecCcee-----EEEECCCCCEEEE--eeCCC--cEEEEecCCcE
Q 026765          184 LDTV----VAHTAGCY-----CIAIDPMGRYFAV--GSADS--LVSLWDISEML  224 (233)
Q Consensus       184 ~~~~----~~~~~~v~-----~i~~~p~~~~las--~s~dg--~v~iwd~~~~~  224 (233)
                      ...+    ..|...+.     .++|+|+|+.|+.  ...+|  .|.+||+..++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            5444    35666666     7899999996554  44555  46777776554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.2e-16  Score=136.29  Aligned_cols=210  Identities=8%  Similarity=-0.040  Sum_probs=143.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEE--eCCCCEEEEecccCCCCceeeEEEecCcCcEE---------EEEEc--CCCC
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKDIELRGHADSVD---------QLCWD--PKHA   79 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~--~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~   79 (233)
                      .+.+.+|...|..++|++++-.+++.  +.|+..+||.....  +.  ..++..|...+.         ...|+  |++.
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CC--cceeCCCCccccccccccCCccceeeeecCCC
Confidence            35677899999999999887777777  56889999987322  22  224555555544         55565  8887


Q ss_pred             C-EEEEEeCCCeEEEEECC--C-Ceeeeeeee------cCCeeEEEECCCCCeEEEEcCC----------CcEEEEEcCC
Q 026765           80 D-LIATASGDKTVRLWDAR--S-GKCSQQAEL------SGENINITYKPDGTHIAVGNRD----------DELTILDVRK  139 (233)
Q Consensus        80 ~-~l~sg~~d~~i~iwd~~--~-~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~  139 (233)
                      . ++++...+..|.++++.  . +.. ..+..      ......++|+|||+.|+.++.+          ..|.+||+.+
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            6 55554446677777775  2 432 22222      1234568999999999988876          5789999877


Q ss_pred             ------Ceeeeee-ecCceeeEEEECCCCCEEEEEeCC--------CeEEEEecC-Cc--eeeeEEe-eecCceeEEEEC
Q 026765          140 ------FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGN--------GTVEVLTYP-SL--RPLDTVV-AHTAGCYCIAID  200 (233)
Q Consensus       140 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~--~~~~~~~-~~~~~v~~i~~~  200 (233)
                            .+..... .....+..+.|+|||+.++..+.+        ..+.+|+.. ++  .....+. .|...+..++|+
T Consensus       171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred             CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence                  4433222 223456778999999999877644        479999998 45  1333444 446788999999


Q ss_pred             CCCCEEEEeeCCC--cEEEEecCCcEEEE
Q 026765          201 PMGRYFAVGSADS--LVSLWDISEMLCVR  227 (233)
Q Consensus       201 p~~~~las~s~dg--~v~iwd~~~~~~i~  227 (233)
                      |+|+++++++.|+  .|.+||+..++..+
T Consensus       251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~  279 (662)
T 3azo_A          251 PDGSLIVATDRTGWWNLHRVDPATGAATQ  279 (662)
T ss_dssp             TTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred             CCCeEEEEECCCCCeEEEEEECCCCceee
Confidence            9999888888888  56666665665443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=6.3e-15  Score=113.03  Aligned_cols=204  Identities=13%  Similarity=0.166  Sum_probs=147.1

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe------cCcCcEEEEEEcCCCCCEEEEEeC-CCe
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPKHADLIATASG-DKT   90 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~sg~~-d~~   90 (233)
                      +|.....+++++++++++++...++.|++|+.+.   ....  .+.      ++...+..+++.+.++.++++... ++.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~--~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKF--QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEE--EECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEE--EecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            5667899999999999999988999999998652   1111  221      244578899995334456665533 889


Q ss_pred             EEEEECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCCCCEEE
Q 026765           91 VRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  165 (233)
                      |.+|| .+++....+...  ..+..++++|+++.+++...++.|.+||... +.+....   ....+..+++++++++++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            99999 455554444322  3456799999999888777888999999643 3333332   123578899999999888


Q ss_pred             EEeCCCeEEEEecCCceeeeEEeee--cCceeEEEECCCCCEEEEeeCCC-cEEEEecCCcEEEEeee
Q 026765          166 LTTGNGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFT  230 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~las~s~dg-~v~iwd~~~~~~i~~~~  230 (233)
                      +...++.+.+|+.. ++.+..+..+  ...+..++++|+|+++++...++ .|.+||.. +..++++.
T Consensus       180 ~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~  245 (286)
T 1q7f_A          180 SDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALE  245 (286)
T ss_dssp             EEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred             EECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence            77889999999964 4455555433  25688999999999988888886 99999964 66666664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=3.2e-17  Score=141.79  Aligned_cols=197  Identities=13%  Similarity=0.135  Sum_probs=136.3

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCc-----EEEEEEcCCCCCEEEEEeCC------
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-----VDQLCWDPKHADLIATASGD------   88 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~l~sg~~d------   88 (233)
                      ......++|+|+|++++++  |++|++|++....    ....+.+|...     ...++|+|++. .|+.++.+      
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRH   88 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSS
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCc----eEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEE
Confidence            3446689999999999986  9999999987532    12235566532     23478999865 55666665      


Q ss_pred             ---CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc---------------
Q 026765           89 ---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---------------  150 (233)
Q Consensus        89 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------  150 (233)
                         +.+.+||+.+++..............+|+|||+.|+.+ .++.|.+||+.+.+.......+.               
T Consensus        89 ~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             ccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence               56679999998865533334556789999999999877 46789999987655332111111               


Q ss_pred             ----eeeEEEECCCCCEEEEEeCCC------------------------------------eEEEEecCC---ce--eee
Q 026765          151 ----EVNEIAWNMTGEMFFLTTGNG------------------------------------TVEVLTYPS---LR--PLD  185 (233)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~~~~~------------------------------------~v~~~~~~~---~~--~~~  185 (233)
                          ....+.|+|||+.++....|.                                    .+.+||..+   ++  ...
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence                113488999999998764221                                    477788776   52  222


Q ss_pred             EEee------ecCceeEEEECCCCCEEEEeeC----CCcEEEEecCCcE
Q 026765          186 TVVA------HTAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEML  224 (233)
Q Consensus       186 ~~~~------~~~~v~~i~~~p~~~~las~s~----dg~v~iwd~~~~~  224 (233)
                      .+..      |...+..++|+|+|+.++....    +..|.+||+.+++
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            3332      6667889999999997665432    3479999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=2.7e-15  Score=119.29  Aligned_cols=208  Identities=12%  Similarity=0.120  Sum_probs=133.4

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEe----------CCCCEEEEecccCCCCceeeEEEec----CcCcEEEEEEcCCCC
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG----HADSVDQLCWDPKHA   79 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~----------~D~~v~vW~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~   79 (233)
                      .++..+..+  .++|+|+|++++++.          .|++|.+||+...  ..+..+.+..    +......++++|++.
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~  120 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDGK  120 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCCC
Confidence            345555555  899999999998886          3678999997632  2233333321    223456789999875


Q ss_pred             CEEEEEe-C-CCeEEEEECCCCeeeee-eeecCCeeEEEECCCC-CeEEEEcCCC-------------------------
Q 026765           80 DLIATAS-G-DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDD-------------------------  130 (233)
Q Consensus        80 ~~l~sg~-~-d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~-------------------------  130 (233)
                       +|++++ . ++.|.+||+.+++.... ....+. ..+.+.|++ ..+++.+.|+                         
T Consensus       121 -~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~  198 (361)
T 2oiz_A          121 -FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV  198 (361)
T ss_dssp             -EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred             -EEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence             555554 3 68999999998876655 332211 112223322 2222333333                         


Q ss_pred             -----------------------cEEEEEcCCCee--eeeeec--------C---ceeeEEEECCCCCEEEEEeC-----
Q 026765          131 -----------------------ELTILDVRKFKP--IHRRKF--------G---YEVNEIAWNMTGEMFFLTTG-----  169 (233)
Q Consensus       131 -----------------------~i~i~d~~~~~~--~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~-----  169 (233)
                                             .+.++|+.....  ......        .   .....++++++++.+++...     
T Consensus       199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence                                   344444432111  000000        0   00112788999888777643     


Q ss_pred             ------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc--EEEEeee
Q 026765          170 ------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFT  230 (233)
Q Consensus       170 ------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~--~~i~~~~  230 (233)
                            .+.+.+||..+.+.+..+..+.  +.+++|+|+|++|++++. +.|.|||++++  +.++++.
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~  344 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE  344 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence                  3589999999999999988776  899999999999998887 99999999999  9998864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.7e-15  Score=118.91  Aligned_cols=201  Identities=13%  Similarity=0.136  Sum_probs=146.6

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEE---------ecCcCcEEEEEEcCCCCCEEEEEe-C
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL---------RGHADSVDQLCWDPKHADLIATAS-G   87 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~l~sg~-~   87 (233)
                      ++......++++|+|+++++...++.|++|+.+... ..+  ..+         .++......++++|+++.++++.+ .
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~--~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~  164 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPL--LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC  164 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCS--EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEE--EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence            345578899999999999998889999999975321 011  122         234456889999995567877776 6


Q ss_pred             CCeEEEEECCCCeeeeeeeecC-----------CeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee---cCcee
Q 026765           88 DKTVRLWDARSGKCSQQAELSG-----------ENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEV  152 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~  152 (233)
                      ++.|++||. +++....+...+           .+..++++|+ +..+++...++.|.+||..+.+.+....   .+..+
T Consensus       165 ~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          165 NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            899999994 555544443211           2567999998 6777777788999999998666655443   23456


Q ss_pred             eEEEECC------CCCEEEEEeCCCeEEEEecCCceeeeEEe---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          153 NEIAWNM------TGEMFFLTTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       153 ~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ..++++|      +++.+++...+..+.+|+..+++.+..+.   ++...+..|+++|+|..+++...++.|++|++..
T Consensus       244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            7788888      33333333345689999998888877763   5667789999999998889999999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=7.5e-15  Score=112.61  Aligned_cols=198  Identities=11%  Similarity=0.119  Sum_probs=141.9

Q ss_pred             CccccEEEEEE-CcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           18 GHKKKVHSVAW-NCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        18 ~H~~~V~~~~~-~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      +|...+..+++ .+++.++++... ++.|++|+.+.    ... ..+. .+...+..++++|++ +++++...++.|.+|
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g----~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG----QFV-RKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIF  147 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS----CEE-EEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC----cEE-EEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEE
Confidence            35567899999 577777777644 89999998431    111 1222 344578899999976 577777788999999


Q ss_pred             ECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC---ceeeEEEECCCCCEEEEEe
Q 026765           95 DARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        95 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  168 (233)
                      |.. ++....+...   ..+..++++|+++.+++...++.|.+||... +.+......   ..+..++++++|+++++..
T Consensus       148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADN  225 (286)
T ss_dssp             CTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             cCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeC
Confidence            964 4444433221   2456799999998888878889999999754 333333221   3577899999999888887


Q ss_pred             CCC-eEEEEecCCceeeeEEeeecC--ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          169 GNG-TVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       169 ~~~-~v~~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      .++ .+.+|+. +++.+..+..+..  .+.+++++|+|+++++ +.|+.|++|++....+
T Consensus       226 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          226 HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            776 9999995 4566666665443  3679999999987777 6799999999876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=1.5e-15  Score=121.25  Aligned_cols=208  Identities=12%  Similarity=0.057  Sum_probs=140.5

Q ss_pred             cceeeeCccccEEE-----EEECcCCCEEEEEeC-CCC--EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEE
Q 026765           12 HSREYTGHKKKVHS-----VAWNCTGTKLASGSV-DQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA   83 (233)
Q Consensus        12 ~~~~~~~H~~~V~~-----~~~~~~~~~l~s~~~-D~~--v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   83 (233)
                      ....+..|.+.+..     .+|+|||++|+.++. |+.  |.+||+..   +... ....++...+..+.|+|++ +.|+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~---g~~~-~lt~~~~~~~~~~~~spdg-~~l~   96 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT---QVAT-QLTEGRGDNTFGGFLSPDD-DALF   96 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---CEEE-ECCCSSCBCSSSCEECTTS-SEEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC---CceE-EeeeCCCCCccceEEcCCC-CEEE
Confidence            34566777777776     899999999999887 776  55556542   1111 1233455555567899986 4667


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeeecCCee---EEEECCCCCeEEEE----------------------cCCCcEEEEEcC
Q 026765           84 TASGDKTVRLWDARSGKCSQQAELSGENI---NITYKPDGTHIAVG----------------------NRDDELTILDVR  138 (233)
Q Consensus        84 sg~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~----------------------~~d~~i~i~d~~  138 (233)
                      .++.++.|.+||+.+++.......+....   ...++|+++.++..                      ..+..|.+||+.
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            78888999999999887655544443322   23458999888742                      234678999998


Q ss_pred             CCeeeeeeecCceeeEEEECC-CCCEEEEEeCC------CeEEEEecCCceeeeEEeeec--CceeEEEECCCCCEEEEe
Q 026765          139 KFKPIHRRKFGYEVNEIAWNM-TGEMFFLTTGN------GTVEVLTYPSLRPLDTVVAHT--AGCYCIAIDPMGRYFAVG  209 (233)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~las~  209 (233)
                      +.+..........+..+.|+| +|+.++.....      ..+.+++....+ ...+..+.  ..+...+|+|+|+.|+..
T Consensus       177 ~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          177 TGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             TCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             CCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEE
Confidence            776554444445678899999 99988877653      367777765433 23333343  247788999999987665


Q ss_pred             eC-CC----cEEEEecCCcEE
Q 026765          210 SA-DS----LVSLWDISEMLC  225 (233)
Q Consensus       210 s~-dg----~v~iwd~~~~~~  225 (233)
                      +. ++    .|.+||+++++.
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          256 SYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             EEETTCCCEEEEEECTTTCCE
T ss_pred             ecCCCCCcceEEEEecCCCce
Confidence            43 22    399999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=4.6e-15  Score=116.40  Aligned_cols=206  Identities=11%  Similarity=0.050  Sum_probs=147.3

Q ss_pred             cccEEEEEECcCCCEEEEEeCC------------------------CCEEEEecccCCCCceeeEEEecCcCcEEEEEEc
Q 026765           20 KKKVHSVAWNCTGTKLASGSVD------------------------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD   75 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D------------------------~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~   75 (233)
                      .+.+.+|+++|+|+++++.+.+                        ++|.+||....   .+....-.++-.....++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence            5679999999999999998877                        47899987532   22221112344578899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCe-eeeeeee----------cCCeeEEEECC-CCCeEEEEc-CCCcEEEEEcCCCee
Q 026765           76 PKHADLIATASGDKTVRLWDARSGK-CSQQAEL----------SGENINITYKP-DGTHIAVGN-RDDELTILDVRKFKP  142 (233)
Q Consensus        76 ~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~  142 (233)
                      |++ +++++...++.|++||..... ....+..          -..+..++++| ++..+++.+ .++.|.+||. ..+.
T Consensus       100 ~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~  177 (329)
T 3fvz_A          100 TDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF  177 (329)
T ss_dssp             TTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE
T ss_pred             CCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE
Confidence            876 488888889999999986542 2222211          11356799999 788877776 6899999994 3433


Q ss_pred             eeeeec-C----------ceeeEEEECCC-CCEEEEEeCCCeEEEEecCCceeeeEEe--eecCceeEEEECC------C
Q 026765          143 IHRRKF-G----------YEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDP------M  202 (233)
Q Consensus       143 ~~~~~~-~----------~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~i~~~p------~  202 (233)
                      +..... +          ..+..++++++ ++++++...++.|++|+..+++.+..+.  .+...+..++++|      +
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            332211 1          12678999998 7777777889999999998787777764  3556788999999      3


Q ss_pred             CCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          203 GRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       203 ~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++.+++.+.+..|++||+.+++.+.+|.
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            3333334445689999999999998874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=3.4e-14  Score=109.57  Aligned_cols=207  Identities=12%  Similarity=0.070  Sum_probs=145.2

Q ss_pred             ceeeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+..+.....+++|+|+++ +++++..++.|.+|+....    .  ..+..+...+..++++|++ .++++...++.|
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~--~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i   92 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----L--SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRL   92 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----E--EEEESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----e--EEEECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence            355666777889999999998 7788888999999997642    2  2345566789999999975 577776667899


Q ss_pred             EEEECCCCeeeeeeee-c----CCeeEEEECCCCCeEEE----Ec-------------CCCcEEEEEcCCCeeeeeeecC
Q 026765           92 RLWDARSGKCSQQAEL-S----GENINITYKPDGTHIAV----GN-------------RDDELTILDVRKFKPIHRRKFG  149 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~l~~----~~-------------~d~~i~i~d~~~~~~~~~~~~~  149 (233)
                      .+||..+++....... .    ..+..++++|+|+.+++    |.             ..+.|..++.. .+........
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~  171 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR  171 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC
Confidence            9999977765433221 1    12345899999998876    33             12456666654 2222222222


Q ss_pred             ceeeEEEECCCCCEEEEEeCCCeEEEEecC-Ccee---eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      ...+.++|+++++.+++...++.+.+|+.. +++.   ...+..+...+..++++++|+++++.  ++.|.+||.+ ++.
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            346789999999999666778999999986 3333   22232344556789999999877766  8889999987 777


Q ss_pred             EEeee
Q 026765          226 VRTFT  230 (233)
Q Consensus       226 i~~~~  230 (233)
                      +..+.
T Consensus       249 ~~~~~  253 (296)
T 3e5z_A          249 LGRVL  253 (296)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=1.3e-15  Score=130.00  Aligned_cols=210  Identities=12%  Similarity=0.016  Sum_probs=134.4

Q ss_pred             eeeeCccccEE---------EEEEC--cCCCE-EEEEeCCCCEEEEecccC--CCCceeeEEEec-----CcCcEEEEEE
Q 026765           14 REYTGHKKKVH---------SVAWN--CTGTK-LASGSVDQTARVWHIEPH--GHGKVKDIELRG-----HADSVDQLCW   74 (233)
Q Consensus        14 ~~~~~H~~~V~---------~~~~~--~~~~~-l~s~~~D~~v~vW~~~~~--~~~~~~~~~~~~-----h~~~v~~~~~   74 (233)
                      +.+..|...+.         ...|+  |||++ |+.++. +..+||.++..  +.+.  ...+..     |...+..++|
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~-~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~  137 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF-GDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVL  137 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT-TTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEE
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC-CCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEE
Confidence            45566666666         56665  99998 766553 24445544432  1011  123334     5667889999


Q ss_pred             cCCCCCEEEEEeCC----------CeEEEEECCC------Ceeeeee-eecCCeeEEEECCCCCeEEEEcCC--------
Q 026765           75 DPKHADLIATASGD----------KTVRLWDARS------GKCSQQA-ELSGENINITYKPDGTHIAVGNRD--------  129 (233)
Q Consensus        75 ~~~~~~~l~sg~~d----------~~i~iwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d--------  129 (233)
                      +|++. .|++++.|          ..|.+||+.+      +...... ........++|+|||++|+..+.+        
T Consensus       138 spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          138 LPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             ETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred             CCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence            99875 55666665          5899999987      5543322 222334558899999999877754        


Q ss_pred             CcEEEEEcC-CC---eeeeeeec-CceeeEEEECCCCCEEEEEeCCC--eEEEEecCCceeeeEEeeecCc--------e
Q 026765          130 DELTILDVR-KF---KPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNG--TVEVLTYPSLRPLDTVVAHTAG--------C  194 (233)
Q Consensus       130 ~~i~i~d~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~--------v  194 (233)
                      ..|.+||+. +.   +....... ...+..+.|+|+|++++++..++  .+..|+..+++.......+...        +
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~  296 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM  296 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence            369999998 45   32222222 35678899999999777777788  5555555454432222222211        4


Q ss_pred             eEEEECCCCCEEEEeeCCCcEEEE--ecCCcEEEEee
Q 026765          195 YCIAIDPMGRYFAVGSADSLVSLW--DISEMLCVRTF  229 (233)
Q Consensus       195 ~~i~~~p~~~~las~s~dg~v~iw--d~~~~~~i~~~  229 (233)
                      .+++|+|+++++++++. +.++||  |+..++ ++.+
T Consensus       297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred             ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence            57899999999999999 999999  555554 4444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=9.3e-14  Score=108.74  Aligned_cols=210  Identities=10%  Similarity=0.038  Sum_probs=143.1

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC----Ce
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT   90 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d----~~   90 (233)
                      .+.++...+.+++|+++|++++++..++.|.+|+....   ..... ...+...+.+++++|++ +++++...+    +.
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---~~~~~-~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIKRP-FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGG  113 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEE-EECSSSSEEEEEECTTS-CEEEEECTTSSSCCE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---cEEEE-eeCCCCCcceEEECCCC-cEEEEeCCCCCCCce
Confidence            45567777899999999998888888999999987542   22221 22456789999999885 566666665    68


Q ss_pred             EEEEECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcC------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCC
Q 026765           91 VRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (233)
                      |.+||..++.......   ....+..++++|+++.+++...      .+.+..+|..+.+..........+..++|++++
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999988766432221   1234567899999987776553      245666665543332221212246789999999


Q ss_pred             CEEEEE-eCCCeEEEEecCC-ceeeeEE-----eee--cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          162 EMFFLT-TGNGTVEVLTYPS-LRPLDTV-----VAH--TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       162 ~~~~~~-~~~~~v~~~~~~~-~~~~~~~-----~~~--~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.++++ ..++.+.+|+... ++.+..+     ...  ...+..++++++|+++++...++.|.+||. ++..++++.
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~  270 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  270 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence            866544 5678999999853 2222111     111  135778999999998888888899999998 466666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.69  E-value=1.2e-15  Score=131.97  Aligned_cols=195  Identities=10%  Similarity=0.114  Sum_probs=131.1

Q ss_pred             EEEEECcCCCEEEEEeCCC---------CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           24 HSVAWNCTGTKLASGSVDQ---------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~---------~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ..++|||||++|+.++.++         .+.+||+....     ...+..|...+...+|+|++..+ +.+ .|+.|.+|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-----~~~l~~~~~~~~~~~~SPdG~~l-a~~-~~~~i~~~  137 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-----LITEERIPNNTQWVTWSPVGHKL-AYV-WNNDIYVK  137 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-----ECCSSCCCTTEEEEEECSSTTCE-EEE-ETTEEEEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc-----EEEcccCCCcceeeEECCCCCEE-EEE-ECCeEEEE
Confidence            4578999999999998874         45699986532     12355677889999999997654 454 57899999


Q ss_pred             ECCCCeeeeeeeecC-------------------CeeEEEECCCCCeEEEEcCCC-------------------------
Q 026765           95 DARSGKCSQQAELSG-------------------ENINITYKPDGTHIAVGNRDD-------------------------  130 (233)
Q Consensus        95 d~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~d~-------------------------  130 (233)
                      |+.++...+......                   ....+.|+|||++|+....|.                         
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            998876443211111                   112488999999998765321                         


Q ss_pred             -----------cEEEEEcCC---C---eeeeeee------cCceeeEEEECCCCCEEEEEeC----CCeEEEEecCCce-
Q 026765          131 -----------ELTILDVRK---F---KPIHRRK------FGYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLR-  182 (233)
Q Consensus       131 -----------~i~i~d~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~-  182 (233)
                                 .+.+||+.+   .   +......      ....+..++|+|+|+.++....    +..+.+||..+++ 
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence                       477788877   5   2221111      2345788999999997665533    2378899987765 


Q ss_pred             ---e--eeEE--eeecCcee-----EEEECCCCCEEE-EeeC-C--CcEEEEecCCcEE
Q 026765          183 ---P--LDTV--VAHTAGCY-----CIAIDPMGRYFA-VGSA-D--SLVSLWDISEMLC  225 (233)
Q Consensus       183 ---~--~~~~--~~~~~~v~-----~i~~~p~~~~la-s~s~-d--g~v~iwd~~~~~~  225 (233)
                         +  ...+  ..|...|.     ..+|+|||+.|+ ..+. +  ..|.+||+..+++
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence               1  2222  34555544     788999999877 6664 4  4588888876654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=4e-14  Score=111.06  Aligned_cols=204  Identities=11%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec---CcCcEEEEEEcCCCCCEEEEEe-CCCeEEEEE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATAS-GDKTVRLWD   95 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~sg~-~d~~i~iwd   95 (233)
                      ......++++++++..++...++.|.+||.....  ....+....   .......+++  ++..++++.. .++.|.++|
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe--EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEE
Confidence            4667899999998655555589999999986421  111222211   0113445666  3445555544 488999999


Q ss_pred             CCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC----------CcEEEEEcCCCeeeeeeec--CceeeEEEECCCCCE
Q 026765           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRD----------DELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEM  163 (233)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~  163 (233)
                      ..+++..........+..+.++|+|+.++++..+          +.+.++|..+.+.......  +.....++++|+++.
T Consensus       159 ~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          159 TETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             TTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             CCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence            9998877776665556678999999877766554          7899999988876655544  346889999999999


Q ss_pred             EEEEeCCCeEEEEecCCceeeeE--EeeecCceeEEEECC-CCCEEEEe----eCCCcEEEEecCCcEEEEeee
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDT--VVAHTAGCYCIAIDP-MGRYFAVG----SADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~i~~~p-~~~~las~----s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.++..  .+.++|..+.+....  +..+......++++| +++.+++.    ..++.|.+||.+ ++.+++|.
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            888765  899999877654321  111245678999999 55666666    678999999998 98888875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=1.4e-14  Score=115.52  Aligned_cols=204  Identities=9%  Similarity=0.025  Sum_probs=130.4

Q ss_pred             eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEE--EcCCCCCEEEE----------
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC--WDPKHADLIAT----------   84 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s----------   84 (233)
                      .+|...+..+.|+|+|+.|+.++.++.|++||+....    ....+..+...+....  ++|++. +++.          
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE----ENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVP  151 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCC
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeeeechhhcccccceeECCCCC-eeccccccCccccc
Confidence            3455555577899999999999999999999987532    1112333444443333  377654 4442          


Q ss_pred             ------------EeCCCeEEEEECCCCeeeeeeeecCCeeEEEECC-CCCeEEEEcCC------CcEEEEEcCCCeeeee
Q 026765           85 ------------ASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGNRD------DELTILDVRKFKPIHR  145 (233)
Q Consensus        85 ------------g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~  145 (233)
                                  ...+..|.+||+.+++.............+.|+| +++.|+....+      ..|.++|+...+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV  231 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred             ccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence                        2345789999999887655444445566789999 99988876653      3688888765433222


Q ss_pred             eecC--ceeeEEEECCCCCEEEEEeC-CC----eEEEEecCCceee--eEEeeecCc---eeEEEECCCCCEEEEe----
Q 026765          146 RKFG--YEVNEIAWNMTGEMFFLTTG-NG----TVEVLTYPSLRPL--DTVVAHTAG---CYCIAIDPMGRYFAVG----  209 (233)
Q Consensus       146 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~~~~~~--~~~~~~~~~---v~~i~~~p~~~~las~----  209 (233)
                      ....  ..+....|+|+|+.++..+. ++    .+.+||..+++..  ..+.++...   ...++|+|+|+.|+..    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            2222  34677899999997765432 22    3999998876532  222221100   1223799999988754    


Q ss_pred             -----eCCCcEEEEecCCcEE
Q 026765          210 -----SADSLVSLWDISEMLC  225 (233)
Q Consensus       210 -----s~dg~v~iwd~~~~~~  225 (233)
                           ..+..|.+||+..++.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             -----CCCCEEEEEETTTTEE
T ss_pred             cccccCCCCEEEEEeccCCce
Confidence                 4567899999998765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=5.9e-14  Score=120.87  Aligned_cols=207  Identities=12%  Similarity=0.051  Sum_probs=135.5

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCC-----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe--
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--   90 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~-----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~--   90 (233)
                      +|+..+..++|||||++||.++.++     +|++||+...   ......+..  ..+..++|+|++. .|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~~~~--~~~~~~~wspDg~-~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVLER--VKFSCMAWTHDGK-GMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEEEE--ECSCCEEECTTSS-EEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCcccccC--cccceEEEEeCCC-EEEEEEECCccc
Confidence            3555789999999999998776543     8999998642   222222222  2256789999875 4555666654  


Q ss_pred             --------------EEEEECCCCeeeeee--ee---cCCeeEEEECCCCCeEEEEcC-----CCcEEEEEcCC------C
Q 026765           91 --------------VRLWDARSGKCSQQA--EL---SGENINITYKPDGTHIAVGNR-----DDELTILDVRK------F  140 (233)
Q Consensus        91 --------------i~iwd~~~~~~~~~~--~~---~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~  140 (233)
                                    |.+|++.+++.....  ..   ......+.|+|||++|+....     +..+.+||+.+      .
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999877532111  21   122457899999999987664     56799999875      3


Q ss_pred             e-eeeeeecCceeeEEEECCCCCEEEEEeC----CCeEEEEecCCce--eeeEEeeecC--ceeEEEECCCCCEEEEeeC
Q 026765          141 K-PIHRRKFGYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLR--PLDTVVAHTA--GCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       141 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~--~~~~~~~~~~--~v~~i~~~p~~~~las~s~  211 (233)
                      . ....+..........|+++|+.++..+.    ++.+.+|+..+.+  ....+..|..  .+..++|++++.++++...
T Consensus       276 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             SCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence            2 1222222111112357788888777654    3468888887653  2345555654  5778899988888889988


Q ss_pred             CCc--EEEEecCCcEEEEeee
Q 026765          212 DSL--VSLWDISEMLCVRTFT  230 (233)
Q Consensus       212 dg~--v~iwd~~~~~~i~~~~  230 (233)
                      |+.  |.+||+.++..++++.
T Consensus       356 ~g~~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          356 DVKNTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             TTEEEEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEEEECCCCCEEEecC
Confidence            985  5667776776666553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=2.1e-13  Score=104.36  Aligned_cols=190  Identities=12%  Similarity=0.080  Sum_probs=144.4

Q ss_pred             cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec
Q 026765           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS  108 (233)
Q Consensus        30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~  108 (233)
                      ..++.|++++.|+.|.+||.++.   + ...++..+. ..+.++.+.|++ ++++  +.++.|..||. +++....+...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG---~-~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK---E-IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT---E-EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC---e-EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence            34688999999999999997542   2 234555554 467888999976 5766  45788999999 78776666543


Q ss_pred             --CCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeeeecC-------ceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765          109 --GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFG-------YEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (233)
Q Consensus       109 --~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  178 (233)
                        .....+.+.|+|+.+++.+. ++.+..+|. .++.+......       .....+...++|+++++...++.+..||.
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence              24456889999999998877 677777775 45544443321       12345677889999999999999999998


Q ss_pred             CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      . ++.+.++... ..+.++...++|+.+++++.++.|..+|.++++.+-+|.
T Consensus       154 ~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          154 N-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             T-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             C-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            7 8887777654 456778889999999999999999999999999988885

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=9e-14  Score=109.29  Aligned_cols=190  Identities=13%  Similarity=0.063  Sum_probs=120.5

Q ss_pred             ccEEEEEECcCCCEEEEEeCC---CC--EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC--------
Q 026765           21 KKVHSVAWNCTGTKLASGSVD---QT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--------   87 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D---~~--v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~--------   87 (233)
                      ..+..++|+|||++|+.++.+   +.  |.+|++..   +...  .+..+.. +..++|+|++..+++++..        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~---g~~~--~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET---LSSK--KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT---TEEE--EEEEESE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC---CceE--EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence            457889999999999888764   44  55555542   1222  2222333 8999999987655444322        


Q ss_pred             ------------------CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-------cEEEEEcCCCee
Q 026765           88 ------------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-------ELTILDVRKFKP  142 (233)
Q Consensus        88 ------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~  142 (233)
                                        ...|.+||+.+++....+... ....+.|+|++ .++++..+.       ...+|.+.+.+.
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence                              257889999888762333333 56678999999 777665442       334444434332


Q ss_pred             eeeeecCceeeEEEECCCCCEEEEEeCC--------CeEEEEecCCceeeeEEeeecCceeE-EEECCCCCEEEEeeCCC
Q 026765          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGN--------GTVEVLTYPSLRPLDTVVAHTAGCYC-IAIDPMGRYFAVGSADS  213 (233)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~v~~-i~~~p~~~~las~s~dg  213 (233)
                      ...... ..+  ..++|+|+.++..+.+        ..+.+|+  +++.......+...+.. +.|+ ++ ++++++.++
T Consensus       211 ~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          211 EKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            221121 222  2348999988877643        3677777  44433223345667775 8999 88 999999999


Q ss_pred             cEEEEecCCcEEE
Q 026765          214 LVSLWDISEMLCV  226 (233)
Q Consensus       214 ~v~iwd~~~~~~i  226 (233)
                      .++|| +.+++..
T Consensus       284 ~~~l~-~~~g~~~  295 (347)
T 2gop_A          284 SVNLY-IWDGEIK  295 (347)
T ss_dssp             EEEEE-EESSSEE
T ss_pred             cEEEE-EcCCceE
Confidence            99999 8765543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=5.5e-15  Score=118.04  Aligned_cols=197  Identities=9%  Similarity=-0.030  Sum_probs=127.8

Q ss_pred             EEEEEECcCCCEEEEEeC-CC--CEEEEecccCCCCceeeEEEecCcCc-EEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           23 VHSVAWNCTGTKLASGSV-DQ--TARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~-D~--~v~vW~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      +..++|+|+|++|+..+. ++  .|.+|++...   ..  ..+..+... ...+.|+|++ +.|+.++.++.|.+||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~--~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QA--VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EE--EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cE--EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCC
Confidence            778899999999877654 34  5666676431   11  223333333 2337899986 5667778888999999988


Q ss_pred             CeeeeeeeecCCe-eE-------------------EEECCCCCeEEEE-----cCCCcEEEEEcCCCeeeeeeecCceee
Q 026765           99 GKCSQQAELSGEN-IN-------------------ITYKPDGTHIAVG-----NRDDELTILDVRKFKPIHRRKFGYEVN  153 (233)
Q Consensus        99 ~~~~~~~~~~~~~-~~-------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~  153 (233)
                      ++........... ..                   +.++|+++.++..     ..+..|.+||+.+.+..........+.
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~  191 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLG  191 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccc
Confidence            7654443322211 11                   2457777776544     345678999998766544444445678


Q ss_pred             EEEECC-CCCEEEEEeCC------CeEEEEecCCceeeeEEeee--cCceeEEEECCCCCEEEEeeCC-----CcEEEEe
Q 026765          154 EIAWNM-TGEMFFLTTGN------GTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSAD-----SLVSLWD  219 (233)
Q Consensus       154 ~~~~~~-~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~las~s~d-----g~v~iwd  219 (233)
                      .+.|+| +++.++..+.+      ..+.+++....+. ..+..+  ...+..++|+|+|++|+.++.+     +.|.+||
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKAN  270 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEEC
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEE
Confidence            899999 78877666543      3577888754432 222223  2247789999999988877654     4599999


Q ss_pred             cCCcEEE
Q 026765          220 ISEMLCV  226 (233)
Q Consensus       220 ~~~~~~i  226 (233)
                      +.+++..
T Consensus       271 ~~~g~~~  277 (396)
T 3c5m_A          271 PETLENE  277 (396)
T ss_dssp             TTTCCEE
T ss_pred             CCCCCeE
Confidence            9877543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=1.6e-13  Score=105.85  Aligned_cols=201  Identities=12%  Similarity=0.077  Sum_probs=134.7

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE--EecC-cCcEEEEEEcCCCCCEEEE----E
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRGH-ADSVDQLCWDPKHADLIAT----A   85 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~--~~~h-~~~v~~~~~~~~~~~~l~s----g   85 (233)
                      .+.+..+...+.+++|+|+|+++++...++.|.+|+.....   .....  ..+. ...+..++++|++ +++++    |
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g  136 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE---WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYG  136 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC---EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHH
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc---EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccc
Confidence            34566677889999999999988888778999999975322   11111  1111 2345678999975 57776    3


Q ss_pred             e-------------CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC-CCee---eeeee-
Q 026765           86 S-------------GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKP---IHRRK-  147 (233)
Q Consensus        86 ~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~-  147 (233)
                      .             ..+.|..+|.. ++.............++|+|+++.+++...++.|.+||+. ..+.   ..... 
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~  215 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV  215 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC
T ss_pred             cccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC
Confidence            2             12355555554 4433222222345679999999998777778999999986 3322   11111 


Q ss_pred             cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE-CCCCCEEEEeeCCCcEEEEecCCc
Q 026765          148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI-DPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~-~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ....+..++++++|+++++.  ++.+.+|+.. ++.+..+..+.. +.+++| +|+++.|.+++.++ +.-++.++.
T Consensus       216 ~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          216 EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            12245678999999876666  7889999975 667777776666 899999 68999998888764 444455543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=5.6e-14  Score=120.78  Aligned_cols=203  Identities=13%  Similarity=0.013  Sum_probs=130.3

Q ss_pred             CccccEEEEEECcCCCEEE-----EEeCCCCEEEEecccCCCCceeeEEEecCcCcE--EEEEEcCCCCCEEEEEeCCCe
Q 026765           18 GHKKKVHSVAWNCTGTKLA-----SGSVDQTARVWHIEPHGHGKVKDIELRGHADSV--DQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~-----s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      +|...+..++|||||++||     +|+.+.+|++||+......  .    ..+...+  ..++|+|++. .|+.++.|..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~--~----~~~~~~~~~~~~~wspDg~-~l~~~~~d~~  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS--K----VDVIEGGKYATPKWTPDSK-GFYYEWLPTD  190 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC--S----SCCBSCCTTCCCEECTTSS-EEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc--C----CcccCcccccceEEecCCC-EEEEEEecCC
Confidence            4666799999999999998     5555678999999753311  0    1122222  6789999875 5666777665


Q ss_pred             -------------EEEEECCCCeee--eeeee--c-CCeeEEEECCCCCeEEEEcCCC----cEEEEEcCCCeeeeeeec
Q 026765           91 -------------VRLWDARSGKCS--QQAEL--S-GENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKF  148 (233)
Q Consensus        91 -------------i~iwd~~~~~~~--~~~~~--~-~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~  148 (233)
                                   |.+|++.++...  .....  + .....+.|+|||++|+..+.++    .+.+++..+.+.......
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  270 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG  270 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence                         999999877532  11111  1 2456789999999998877665    566676544333222222


Q ss_pred             CceeeEEEECCCCCEEEEEe---CCCeEEEEecCCcee--eeEEeee--cCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          149 GYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRP--LDTVVAH--TAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~~~~~~~--~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ........+ +++++++.+.   .++.+.+|+..+++.  ...+..+  ...+..++++ ++.++++...|+..+||.+.
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            223334445 5666444443   358899999866542  2344444  3457778888 67788899999998888765


Q ss_pred             -CcEEEEee
Q 026765          222 -EMLCVRTF  229 (233)
Q Consensus       222 -~~~~i~~~  229 (233)
                       ++..++++
T Consensus       349 ~~g~~~~~l  357 (695)
T 2bkl_A          349 LKGKPVRTV  357 (695)
T ss_dssp             TTCCEEEEC
T ss_pred             CCCCeeEEe
Confidence             45555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=3.4e-13  Score=102.30  Aligned_cols=199  Identities=11%  Similarity=0.042  Sum_probs=140.2

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      +...+.+++++++|+.+++.. ++.|.+|+.....   ..  .+. .....+..+++++++ +++++...++.|.+|+..
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---~~--~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~  137 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---QT--VLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAG  137 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---CE--ECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTT
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---Ee--eeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECC
Confidence            335678899999999777766 8899999875321   11  122 223568899999875 577777778899999865


Q ss_pred             CCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      +......... ...+..++++++++.+++...++.|.+||............. ..+..++++++|..+++...++.+.+
T Consensus       138 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK  217 (270)
T ss_dssp             CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred             CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence            5433221111 124567899999987777777889999998765433221112 45778999999987777778889999


Q ss_pred             EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      |+............+...+.+++++|+|+.+++...++.|+++++.+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9976543322222233568899999999988999999999999998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=1.4e-13  Score=107.69  Aligned_cols=192  Identities=8%  Similarity=0.079  Sum_probs=137.2

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      ..|.+++|++++..+++.+.++.++.|.-.       ....+..+...+.+++|+|++ ++++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------PWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------EEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCcccccc-------eeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc
Confidence            457788999998888888889999999321       122455666778999999875 577788889999999998876


Q ss_pred             eeeee-eecCCeeEEEECCCCCeEEEEcCC----CcEEEEEcCCCeeeeee---ecCceeeEEEECCCCCEEEEEeC---
Q 026765          101 CSQQA-ELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG---  169 (233)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---  169 (233)
                      ..... .....+..++++|+++.+++...+    +.|.+||..+.......   .....+..+.++++|+++++...   
T Consensus        78 ~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred             EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence            54433 233556789999999887777666    68999998765433221   12345788999999988776653   


Q ss_pred             ---CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE-EEeeCCCcEEEEecC
Q 026765          170 ---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS  221 (233)
Q Consensus       170 ---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~  221 (233)
                         .+.+..++....+. ..+..+...+..++|+|++++| ++.+.++.|.+||++
T Consensus       158 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             TBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence               35566666543333 2333344567899999999865 455568899999996

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=2.7e-14  Score=114.01  Aligned_cols=194  Identities=8%  Similarity=0.023  Sum_probs=125.7

Q ss_pred             EEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEE-------------------EEEcCCCCCEEEEE
Q 026765           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-------------------LCWDPKHADLIATA   85 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~l~sg   85 (233)
                      .+.|+|+|++|+.++.++.|.+|++....   ... ....+......                   +.|+|++..+++..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~---~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~  160 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLE---EQV-IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE  160 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCC---EEE-EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCC---cEE-EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence            37899999999999999999999986422   111 12223222222                   34566654332221


Q ss_pred             ----eCCCeEEEEECCCCeeeeeeeecCCeeEEEECC-CCCeEEEEcCC------CcEEEEEcCCCeeeeeeec--Ccee
Q 026765           86 ----SGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGNRD------DELTILDVRKFKPIHRRKF--GYEV  152 (233)
Q Consensus        86 ----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~--~~~~  152 (233)
                          ..+..|.+||+.+++.............+.|+| ++..|+..+.+      ..|.+||+...+.......  ...+
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC  240 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred             eccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence                466789999998887655444445566789999 78877665443      3588888765432222221  2357


Q ss_pred             eEEEECCCCCEEEEEeCC-----CeEEEEecCCceeeeEEeeecCceeEEEECC-CCCEEEEee----------------
Q 026765          153 NEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGS----------------  210 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~las~s----------------  210 (233)
                      ..+.|+|+|+.++..+.+     +.+.+||..+++... +.... ... +.|+| +|++++.++                
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence            788999999987766433     449999987765432 22112 223 88999 999888765                


Q ss_pred             CCCcEEEEecCCcEE
Q 026765          211 ADSLVSLWDISEMLC  225 (233)
Q Consensus       211 ~dg~v~iwd~~~~~~  225 (233)
                      .++.|.+||+..+..
T Consensus       318 ~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCCEEEEEETTTTBC
T ss_pred             CCCcEEEEecccCce
Confidence            347899999987653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=1.5e-12  Score=102.03  Aligned_cols=194  Identities=8%  Similarity=0.022  Sum_probs=140.9

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      .....+.++ .++..++...+++|.+||..+..  .+.  ++. .......+++++++ +++++...++.|.+||..+++
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~--~~~--~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK--EVG--RIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC--EEE--EEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccE--EEE--EcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe
Confidence            345677773 34555666678999999986422  112  233 34567889998875 565555589999999999988


Q ss_pred             eeeeeeecC------CeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC--
Q 026765          101 CSQQAELSG------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--  170 (233)
Q Consensus       101 ~~~~~~~~~------~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  170 (233)
                      .........      .+..+++  ++..+.++.  .++.|.++|+.+.+.+.....+.....+.++++|+++++...+  
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~  194 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYE  194 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCT
T ss_pred             EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCcc
Confidence            776665544      4556777  445555554  4789999999988877777666667889999999977776655  


Q ss_pred             --------CeEEEEecCCceeeeEEeee-cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          171 --------GTVEVLTYPSLRPLDTVVAH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       171 --------~~v~~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                              +.+.++|..+.+....+... ...+..++++|++++|..+..  .|.+||+.+++.
T Consensus       195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence                    78999999888877665432 346789999999998877654  899999987764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=1.3e-12  Score=99.00  Aligned_cols=197  Identities=13%  Similarity=0.044  Sum_probs=135.4

Q ss_pred             cEEEEEECcCCCEEE-EEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~-s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      ...+++++++|+..+ +...++.|.+|+.....   .. .....+...+..+++++++ +++++.. ++.|.+||.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TT-VLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------E-ECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cc-eEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence            778999999999777 55778999999864321   11 1111233467789999875 4665555 8899999987654


Q ss_pred             eeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765          101 CSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (233)
Q Consensus       101 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  178 (233)
                      ........ ..+..++++++++.+++...++.|.+|+..+......... ...+..++++++++.+++...++.+.+|+.
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence            32211111 3466799999998777777788999998655433221111 125678999999997777777889999998


Q ss_pred             CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ...........+...+..++++++|.++++...++.|.+||.....
T Consensus       179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             CCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            6554332222233567899999999888888788999999987543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.57  E-value=2.3e-12  Score=99.81  Aligned_cols=209  Identities=9%  Similarity=-0.010  Sum_probs=137.4

Q ss_pred             eeeCccccEEEEEECcCCCEEEE-------EeCCCCEEEEecccCCCCceeeEEE---ecCcCcEEEEEEcCCCCCEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLAS-------GSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s-------~~~D~~v~vW~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      .+...-....+++|++++..+++       +..++.|.+|+....   .......   .++...+..+++++++++++++
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~   88 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQCDRDANQLFVA   88 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC---cEEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence            34445556789999999988888       677899999986532   2222111   1245678899999873455544


Q ss_pred             EeCCCeEEEEECCCCeeeee-eeec-----CCeeEEEECCCCCeEEEEcCC---------------CcEEEEEcCCCeee
Q 026765           85 ASGDKTVRLWDARSGKCSQQ-AELS-----GENINITYKPDGTHIAVGNRD---------------DELTILDVRKFKPI  143 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~  143 (233)
                      . ....|.+||.. ++.... ....     ..+..++++++++.+++...+               +.+..+|.. .+..
T Consensus        89 ~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           89 D-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             E-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             E-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence            4 44578899988 654332 2111     224579999999877776554               467777754 3322


Q ss_pred             eeeecCceeeEEEEC----CCCCEEEEE-eCCCeEEEEecC-Cce-----eeeEEeeec-CceeEEEECCCCCEEEEeeC
Q 026765          144 HRRKFGYEVNEIAWN----MTGEMFFLT-TGNGTVEVLTYP-SLR-----PLDTVVAHT-AGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       144 ~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~v~~~~~~-~~~-----~~~~~~~~~-~~v~~i~~~p~~~~las~s~  211 (233)
                      ...........++++    ++++.++++ ..++.+.+|+.. +++     ....+..+. ..+..++++++|+++++...
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            221222245778899    999766555 567899999875 333     122222232 55788999999999888888


Q ss_pred             CCcEEEEecCCcEEEEee
Q 026765          212 DSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       212 dg~v~iwd~~~~~~i~~~  229 (233)
                      ++.|.+||.++++.+..+
T Consensus       246 ~~~i~~~d~~~g~~~~~~  263 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             TTEEEEECTTCBSCSEEE
T ss_pred             CCEEEEEcCCCCcEeEEE
Confidence            899999999867655544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=9.3e-13  Score=113.44  Aligned_cols=202  Identities=7%  Similarity=-0.042  Sum_probs=133.1

Q ss_pred             EEEEEECcCCCEEEEEeCCCC----------------EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           23 VHSVAWNCTGTKLASGSVDQT----------------ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~----------------v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      +..++|+|||+.|+.++.|+.                |++|++...........+...|...+..+.|+|++..++++..
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            567999999999999988876                9999986422111121222335566889999998765554443


Q ss_pred             C----CCeEEEEECCC------Ce-eeeeeeecCCeeEEEECCCCCeEEEEcCC----CcEEEEEcCCCee---eeeeec
Q 026765           87 G----DKTVRLWDARS------GK-CSQQAELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKP---IHRRKF  148 (233)
Q Consensus        87 ~----d~~i~iwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~---~~~~~~  148 (233)
                      .    +..|.+||+.+      +. ....+..........|+|+|..|+..+..    ..|.+||+.+...   ......
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~  332 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE  332 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC
Confidence            1    56899999976      42 22333322222233578899888766543    3588999876531   111222


Q ss_pred             C--ceeeEEEECCCCCEEEEEeCCCeE--EEEecCCceeeeEEeeecCceeEEEECCCCCEEEEe-e---CCCcEEEEec
Q 026765          149 G--YEVNEIAWNMTGEMFFLTTGNGTV--EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG-S---ADSLVSLWDI  220 (233)
Q Consensus       149 ~--~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~-s---~dg~v~iwd~  220 (233)
                      .  ..+..+.|++++.++++...++..  .+|+..+++....+..+...+..++++|+++.++.. +   ..+.|.+||+
T Consensus       333 ~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            1  257778888777777777778755  455655666666777777778889999998765532 2   3478999999


Q ss_pred             CCcE
Q 026765          221 SEML  224 (233)
Q Consensus       221 ~~~~  224 (233)
                      .+++
T Consensus       413 ~tg~  416 (710)
T 2xdw_A          413 TKEE  416 (710)
T ss_dssp             TSSS
T ss_pred             CCCc
Confidence            8765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1.5e-11  Score=103.01  Aligned_cols=195  Identities=14%  Similarity=0.070  Sum_probs=140.2

Q ss_pred             cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC--CCeeeeeeee
Q 026765           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAEL  107 (233)
Q Consensus        30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~--~~~~~~~~~~  107 (233)
                      |.+..+++...|++|.++|..+..  .+.  ++. ....+..+.|+|++ +++++++.|+.|.+||+.  +.+.......
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~--v~~--~i~-~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE--IKT--VLD-TGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC--EEE--EEE-CSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe--EEE--EEe-CCCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            445567788889999999986432  222  232 23356689999986 566778899999999995  6666666665


Q ss_pred             cCCeeEEEEC----CCCCeEEEEcC-CCcEEEEEcCCCeeeeeeecCc------------eeeEEEECCCCCEEEEE-eC
Q 026765          108 SGENINITYK----PDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGY------------EVNEIAWNMTGEMFFLT-TG  169 (233)
Q Consensus       108 ~~~~~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~  169 (233)
                      ......++|+    |||++++++.. ++.+.++|..+.+.+.......            .+..+..++++..+++. ..
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            5566789999    69999887765 4889999998888776655321            35567778877666555 45


Q ss_pred             CCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEeee
Q 026765          170 NGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .|.+.++|+.+.+.... -.........+.|+|++++++++. .+++|.++|+++++.+..+.
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            69999999876432211 112334566889999999876655 57899999999998877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=3.2e-12  Score=100.37  Aligned_cols=185  Identities=14%  Similarity=0.147  Sum_probs=119.9

Q ss_pred             ccccEEEEEECcCCCEEEEEeCC---------------------------CCEEEEecccCCCCceeeEEEecCcCcEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVD---------------------------QTARVWHIEPHGHGKVKDIELRGHADSVDQ   71 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D---------------------------~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~   71 (233)
                      +.. +..++|+|+|+.|+.++.+                           ..|.+|++...   .. ...+.. . .+..
T Consensus       103 ~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---~~-~~~l~~-~-~~~~  175 (347)
T 2gop_A          103 AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---EV-IEEFEK-P-RFSS  175 (347)
T ss_dssp             ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT---EE-EEEEEE-E-TTCE
T ss_pred             CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC---eE-EeeecC-C-Cccc
Confidence            344 9999999999999888743                           46777887532   22 012222 3 7788


Q ss_pred             EEEcCCCCCEEEEEeCCC-------eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC--------CcEEEEE
Q 026765           72 LCWDPKHADLIATASGDK-------TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD--------DELTILD  136 (233)
Q Consensus        72 ~~~~~~~~~~l~sg~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~i~d  136 (233)
                      ++|+|++  +++++..++       ...||.+.+++....... ...  ..++|+|++|+..+.+        ..|.+||
T Consensus       176 ~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          176 GIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             ccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            9999986  777776542       345554444443322222 222  2338999998876644        3577777


Q ss_pred             cCCCeeeeeee-cCceeeE-EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCc
Q 026765          137 VRKFKPIHRRK-FGYEVNE-IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL  214 (233)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~  214 (233)
                        +.+...... ....+.. +.|+ ++ +++++..++..++| ..+++. ..+..+...|.+++|+|  .++++++.++.
T Consensus       251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred             --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence              333222111 2345665 8899 88 88888899999999 765443 44455677889999999  67777777776


Q ss_pred             E-EEEecCCcE
Q 026765          215 V-SLWDISEML  224 (233)
Q Consensus       215 v-~iwd~~~~~  224 (233)
                      . .||.++ ++
T Consensus       323 ~~~l~~~~-g~  332 (347)
T 2gop_A          323 LRELFTWD-GE  332 (347)
T ss_dssp             CCEEEEES-SS
T ss_pred             hHHheEeC-Cc
Confidence            5 888776 54

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=6.2e-13  Score=105.87  Aligned_cols=175  Identities=10%  Similarity=0.081  Sum_probs=125.1

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCC------CCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~------~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .++.+++++...++++|+.| .++||+++.-.      ...... ... .+.. |+.++|  + ...|+.+ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d-~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--H-GDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--E-TTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--C-CCEEEEE-cCCcEEEE
Confidence            68999999999999999987 45569864211      000111 122 3556 999999  4 4677777 88999999


Q ss_pred             ECCCCeeeeee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeE
Q 026765           95 DARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus        95 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      |+++-...... .+......+.+.+.  .++++..||.+.+||+...+...   ....+.+++|+|.|  ++++..||.+
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            98765432222 22333445555443  38889999999999998665432   33579999999999  7889999999


Q ss_pred             EEEecCCcee--eeEE------e---eecCceeEEEECCCCCEEEEee
Q 026765          174 EVLTYPSLRP--LDTV------V---AHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       174 ~~~~~~~~~~--~~~~------~---~~~~~v~~i~~~p~~~~las~s  210 (233)
                      ++|+.+..+.  ...+      .   +|...|.+|.|.+++.++++-+
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9998876654  4445      2   3677899999999999988743

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=2.9e-11  Score=92.44  Aligned_cols=207  Identities=15%  Similarity=0.077  Sum_probs=149.4

Q ss_pred             eeeCcc-ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecC-cCcEEEEEEcCCCCCEEEEEeC-CCeE
Q 026765           15 EYTGHK-KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASG-DKTV   91 (233)
Q Consensus        15 ~~~~H~-~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sg~~-d~~i   91 (233)
                      ++..|. ..+++++++|+|++++  +.++.|..||.+ .  ..+  .++..+ ...+.++.+.+++ +++++.+. ++.+
T Consensus        30 ~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~-G--~~~--W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v  101 (276)
T 3no2_A           30 EYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD-G--REL--WNIAAPAGCEMQTARILPDG-NALVAWCGHPSTI  101 (276)
T ss_dssp             EEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT-S--CEE--EEEECCTTCEEEEEEECTTS-CEEEEEESTTEEE
T ss_pred             EeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC-C--CEE--EEEcCCCCccccccEECCCC-CEEEEecCCCCEE
Confidence            344444 4688999999999999  457889998862 1  122  344433 3468888899876 56667666 7788


Q ss_pred             EEEECCCCeeeeeeeecC-------CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765           92 RLWDARSGKCSQQAELSG-------ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                      ..+|. +++....+....       ....+...++|+++++...++.+..||.. ++.+........+..+...++++.+
T Consensus       102 ~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~  179 (276)
T 3no2_A          102 LEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCL  179 (276)
T ss_dssp             EEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEE
T ss_pred             EEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEE
Confidence            88886 566555444321       22346788999999999999999999987 7777776655456667778999999


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeec------CceeEEEECCCCCEEEEeeCC--------CcEEEEec-CCcEEEEee
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHT------AGCYCIAIDPMGRYFAVGSAD--------SLVSLWDI-SEMLCVRTF  229 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~v~~i~~~p~~~~las~s~d--------g~v~iwd~-~~~~~i~~~  229 (233)
                      +++..++.+..+|..+++.+-++..+.      ..+..+...++|+.+++....        +..+++.+ .+++.+-+|
T Consensus       180 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          180 VACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             EECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             EEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            998888899999998898887776432      226788899999998887422        24567777 577777766


Q ss_pred             ec
Q 026765          230 TK  231 (233)
Q Consensus       230 ~~  231 (233)
                      ..
T Consensus       260 ~~  261 (276)
T 3no2_A          260 ND  261 (276)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=6.4e-11  Score=90.73  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=141.4

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      +..+...+.+++++++|+..++...++.|.+|+.. .   .........+...+..+++++++ .++++...++.|..||
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRIT   84 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEEC
Confidence            34566789999999999988887778999999875 2   22322333345678999999875 5666766688999999


Q ss_pred             CCCCeeeeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-e-cCceeeEEEECCCCCEEEEEeCC
Q 026765           96 ARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-K-FGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        96 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      .. ++. .....   ...+..+++.++++.+++...++.+..||. ..+..... . ....+..+++.++++.+++...+
T Consensus        85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  161 (299)
T 2z2n_A           85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN  161 (299)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence            86 332 22221   234567899999988877777889999998 33322211 1 23457889999999888877778


Q ss_pred             CeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          171 GTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      +.+..++. +++.... +..+...+..++++++++++++...++.|.+||. ++.
T Consensus       162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            89999997 5443321 2223456789999999998777777889999999 554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1.6e-11  Score=94.94  Aligned_cols=195  Identities=10%  Similarity=0.081  Sum_probs=131.9

Q ss_pred             ccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEE-e----c-CcCcEEEEEEcCCCCCEEEEEeCC---
Q 026765           19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIEL-R----G-HADSVDQLCWDPKHADLIATASGD---   88 (233)
Q Consensus        19 H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-~----~-h~~~v~~~~~~~~~~~~l~sg~~d---   88 (233)
                      +...+.+++++++ |+++++.. ++.|.+|+.+ ..   ..  .+ .    + ....+..+++++++ +++++...+   
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~---~~--~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~  140 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GT---FE--EIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVA  140 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SC---EE--ECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCT
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CC---EE--EEEeccCCCccccCCcCEEECCCC-CEEEEecCcccc
Confidence            5677999999999 66555544 4478888865 21   11  11 1    1 12357899999875 566665544   


Q ss_pred             ------------CeEEEEECCCCeeeeeeeecCCeeEEEEC----CCCCeEEEE-cCCCcEEEEEcC-CCeee-----ee
Q 026765           89 ------------KTVRLWDARSGKCSQQAELSGENINITYK----PDGTHIAVG-NRDDELTILDVR-KFKPI-----HR  145 (233)
Q Consensus        89 ------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-~~d~~i~i~d~~-~~~~~-----~~  145 (233)
                                  +.|..||.. ++.............++++    |+++.++++ ..++.|.+||+. ..+..     ..
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~  219 (314)
T 1pjx_A          141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence                        567777765 4443322222345668888    998766544 567899999976 33211     11


Q ss_pred             eecC--ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE-EEeeCCCcEEEEecCC
Q 026765          146 RKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDISE  222 (233)
Q Consensus       146 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~~  222 (233)
                      ....  ..+..++++++|+++++...++.+.+|+..+++.+..+..+...+.+++++|+++.| ++...++.|..|++..
T Consensus       220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            1111  346788999999988888888999999987677666666666788999999999955 5555678899999864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=2.8e-12  Score=110.19  Aligned_cols=200  Identities=9%  Similarity=-0.065  Sum_probs=127.8

Q ss_pred             EEEEECcCCCEEEEEeCCCC-------------EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-C
Q 026765           24 HSVAWNCTGTKLASGSVDQT-------------ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K   89 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~-------------v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-~   89 (233)
                      ..++|+|||+.|+.++.|..             |++|++...........+...|...+..+.|+|++..++++...+ +
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            68999999999999999887             999998643221222223344666788999999986555444333 2


Q ss_pred             --eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc---CCCcEEEEEcCCCee---eeeeec--CceeeEEEECC
Q 026765           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN---RDDELTILDVRKFKP---IHRRKF--GYEVNEIAWNM  159 (233)
Q Consensus        90 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~---~~~~~~--~~~~~~~~~~~  159 (233)
                        .|.+||..++................+ +++..++...   .++.|.+||+.+.+.   ......  ...+..+.|+ 
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-  328 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred             ceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence              666776655543332222233344445 5666433433   247899999876532   222222  3346777887 


Q ss_pred             CCCEEEEEeCCCeEEEEecC-CceeeeEEeee-cCceeEEEECCCCCEEE----EeeCCCcEEEEecCCcEE
Q 026765          160 TGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAH-TAGCYCIAIDPMGRYFA----VGSADSLVSLWDISEMLC  225 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~-~~~v~~i~~~p~~~~la----s~s~dg~v~iwd~~~~~~  225 (233)
                      ++.++++...++..++|..+ +++....+..+ ...+..++++|+++.++    +....+.|++||+.+++.
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66777788889988888664 34444445444 45677888999998766    333457899999987753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.49  E-value=1.8e-11  Score=97.23  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=76.7

Q ss_pred             EEECCCCCeEEEEcC-----------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-
Q 026765          114 ITYKPDGTHIAVGNR-----------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-  181 (233)
Q Consensus       114 ~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  181 (233)
                      ++++|+++.+++...           ...+.+||+.+.+.+.....+. +..++|+|+|++++++.. +.+.+||..++ 
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            688999888776543           3479999999999888888777 999999999999988887 99999999999 


Q ss_pred             -eeeeEEeeecCceeEEEECCCCC
Q 026765          182 -RPLDTVVAHTAGCYCIAIDPMGR  204 (233)
Q Consensus       182 -~~~~~~~~~~~~v~~i~~~p~~~  204 (233)
                       +.+..+..+......++++|+|+
T Consensus       337 l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          337 PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ceeeEEeccCCCCcEEEEecCCCC
Confidence             88888767778889999999985

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=5.8e-12  Score=109.01  Aligned_cols=203  Identities=14%  Similarity=0.107  Sum_probs=124.6

Q ss_pred             CccccEEEEEECcCCCEEEEEeCC-----CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC---
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---   89 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D-----~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~---   89 (233)
                      +|...+..++|||||++||.++.+     .+|++||+....   .....+  +...+..++|+|+ ..+ +.++.|+   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---~~~~~~--~~~~~~~~~wspD-~~l-~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---PLADEL--KWVKFSGLAWLGN-DAL-LYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC---EEEEEE--EEEESCCCEESTT-SEE-EEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCCccC--CCceeccEEEECC-CEE-EEEEecCccc
Confidence            344578899999999999887654     359999987532   111111  1112357899998 544 4455544   


Q ss_pred             -----------eEEEEECCCCeee--eeeeecC---CeeEEEECCCCCeEEEEcCCC-----cEEEEEcCCC--eeeeee
Q 026765           90 -----------TVRLWDARSGKCS--QQAELSG---ENINITYKPDGTHIAVGNRDD-----ELTILDVRKF--KPIHRR  146 (233)
Q Consensus        90 -----------~i~iwd~~~~~~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~--~~~~~~  146 (233)
                                 .|.+|++.++...  .......   ....+.|+|||++|+....++     .+.+||+.+.  +....+
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                       3889998776522  1122211   256789999999988776543     7899998765  202222


Q ss_pred             ec-CceeeEEEECCCCCEEEEEeC----CCeEEEEecCCc-eeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          147 KF-GYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSL-RPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       147 ~~-~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~-~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      .. ....... +.++++.++..+.    ++.+.+++.... .....+. .+...+..++++ ++.++++...|+..+||.
T Consensus       313 ~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          313 IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            21 1122222 3478888877765    456888888764 2233333 344445677777 566788889999888876


Q ss_pred             cC-CcEEEEee
Q 026765          220 IS-EMLCVRTF  229 (233)
Q Consensus       220 ~~-~~~~i~~~  229 (233)
                      ++ ++..++.+
T Consensus       391 ~~~~g~~~~~l  401 (741)
T 1yr2_A          391 FDLDGKPAGAV  401 (741)
T ss_dssp             EETTSCEEEEC
T ss_pred             EeCCCCceeec
Confidence            64 45555544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=2.4e-10  Score=87.48  Aligned_cols=195  Identities=11%  Similarity=0.015  Sum_probs=138.3

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      +...+.+++++++|...++...++.|..|+..    .......++.....+..+++++++ .++++...++.|.+||. +
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK----GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-T
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC----CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-C
Confidence            45679999999999988887778889999864    222333333345678899999865 67777767889999998 5


Q ss_pred             Ceeeeeeee--cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-ee-cCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           99 GKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RK-FGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        99 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ++.......  ...+..+++.++++.+++...++.+..||. +.+.... .. ....+..++++++++++++...++.+.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence            443322111  234567899999987777777788999998 4433321 11 123477899999999877777788999


Q ss_pred             EEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          175 VLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       175 ~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .++. +++.... +..+...+.+++++++|+.+++...++.|.+||..
T Consensus       208 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          208 RITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            9998 5443221 12234578899999999977777678899999984

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=2.6e-10  Score=95.53  Aligned_cols=205  Identities=11%  Similarity=0.053  Sum_probs=139.5

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEc----CCCCCEEEEEeCCCeEEEEECC
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD----PKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .+..+.|+|||+++++++.|+.|.+||+.......+.  +++.. .....++|+    |++..++++.-.+++|.++|..
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            5678999999999999999999999998521222222  33322 235688999    5876666666667999999998


Q ss_pred             CCeeeeeeeecC------------CeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeee--eeeecCceeeEEEECCCCC
Q 026765           98 SGKCSQQAELSG------------ENINITYKPDGTHIA-VGNRDDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGE  162 (233)
Q Consensus        98 ~~~~~~~~~~~~------------~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~  162 (233)
                      +.+........+            ....+..++++..++ ....++.+.++|....+..  .....+.....+.|+++++
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            887766544321            234566777765544 4556689999998764322  2233344456788999999


Q ss_pred             EEEEEe-CCCeEEEEecCCceeeeEEee-----ecCceeEEEECCCC-CEEEEee-CCCcEEEEecCC-------cEEEE
Q 026765          163 MFFLTT-GNGTVEVLTYPSLRPLDTVVA-----HTAGCYCIAIDPMG-RYFAVGS-ADSLVSLWDISE-------MLCVR  227 (233)
Q Consensus       163 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~-~~las~s-~dg~v~iwd~~~-------~~~i~  227 (233)
                      +++++. .++.+.++|..+++....+..     |......+ ++|++ ..++++. .++.|.++|.++       .+.++
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            987765 578999999999887666543     32211112 57874 4455554 468999999987       55667


Q ss_pred             eee
Q 026765          228 TFT  230 (233)
Q Consensus       228 ~~~  230 (233)
                      ++.
T Consensus       434 ~i~  436 (567)
T 1qks_A          434 SFP  436 (567)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=2.5e-10  Score=88.08  Aligned_cols=204  Identities=11%  Similarity=0.082  Sum_probs=132.7

Q ss_pred             CccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           18 GHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .+..---+..|++++ ..+++...++.|..|+....   ....  + .....+.++++++++. ++++ . +..|.+||.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~--~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~   80 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---QVQR--V-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNW   80 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEE--E-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEET
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCC---cEEE--E-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEEC
Confidence            344455688999965 45666667899999997642   1222  2 2446789999999865 5544 3 568999999


Q ss_pred             CCCeeeeeeeec-----CCeeEEEECCCCCeEEEEcCC---------CcEEEEEcCCC-eeeeeeecCceeeEEEECCCC
Q 026765           97 RSGKCSQQAELS-----GENINITYKPDGTHIAVGNRD---------DELTILDVRKF-KPIHRRKFGYEVNEIAWNMTG  161 (233)
Q Consensus        97 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~  161 (233)
                      .+++........     .....++++|+|+.+++....         ....+|.+... +...........+.++|++++
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence            887654333221     123468899999966654321         22345544322 221111112346789999999


Q ss_pred             CEEEE-EeCCCeEEEEecC--Ccee-----eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          162 EMFFL-TTGNGTVEVLTYP--SLRP-----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       162 ~~~~~-~~~~~~v~~~~~~--~~~~-----~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+++ .+.++.+..|+..  +++.     +..+..+...+..++++++|+++++...++.|.+||.++++.+.++.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence            87655 4567899999873  3332     22222234567889999999988888888899999999888877764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.45  E-value=4.4e-10  Score=89.56  Aligned_cols=201  Identities=13%  Similarity=0.042  Sum_probs=122.4

Q ss_pred             EEEECcCCCEEEEEe----------CCCCEEEEecccCCCCceeeEEEe--cC---cCcEEEEEEcCCCCCEEEEEeC-C
Q 026765           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELR--GH---ADSVDQLCWDPKHADLIATASG-D   88 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~----------~D~~v~vW~~~~~~~~~~~~~~~~--~h---~~~v~~~~~~~~~~~~l~sg~~-d   88 (233)
                      .++++|||++++.+.          .++.|.+||....  ..+..+.+.  .+   ...-..+.|+|++..++++... +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence            899999999988875          3678999998532  222222222  00   1234578999987654444323 5


Q ss_pred             CeEEEEECCCCeeeee-eeecCCe--------eEEEECCCCCeEEE----------------------------------
Q 026765           89 KTVRLWDARSGKCSQQ-AELSGEN--------INITYKPDGTHIAV----------------------------------  125 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~l~~----------------------------------  125 (233)
                      +.|.++| .+++.... ....+..        .-+.+.++++.++.                                  
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  226 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCE
Confidence            7899999 88876655 4332210        00112222222111                                  


Q ss_pred             ---EcCCCcEEEEEcCCCe--eeeeeec-----------CceeeEEEECCCCCEEEEEeC----------CCeEEEEecC
Q 026765          126 ---GNRDDELTILDVRKFK--PIHRRKF-----------GYEVNEIAWNMTGEMFFLTTG----------NGTVEVLTYP  179 (233)
Q Consensus       126 ---~~~d~~i~i~d~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~  179 (233)
                         .+..+.+.+.|+....  .+.....           ......+.++++++.+.+...          .+.+.++|..
T Consensus       227 ~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~  306 (373)
T 2mad_H          227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC
Confidence               1122333344432211  0111100           011223678888888777643          3589999999


Q ss_pred             CceeeeEEeeecCceeEEEECCCCC-EEEEee-CCCcEEEEecCCcEEEEee
Q 026765          180 SLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGS-ADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       180 ~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s-~dg~v~iwd~~~~~~i~~~  229 (233)
                      +.+.+.++.. ......++|+|+|+ .++++. .++.|.|+|+++++.++++
T Consensus       307 t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          307 VGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9998888753 33578999999999 677776 5899999999999998874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=1.4e-10  Score=93.61  Aligned_cols=197  Identities=13%  Similarity=0.118  Sum_probs=131.2

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC--eEEEEECC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--TVRLWDAR   97 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~iwd~~   97 (233)
                      -.....|+|+++++++++...++.|++||.+..   .+..+ ... ..... ++|+|++. .|+++..++  .|.+++..
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~-~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTV-HPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEE-EET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGG
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEe-ecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcC
Confidence            346789999999998888888899999997532   22221 222 22233 89999864 556666655  78888876


Q ss_pred             CCeeeeee----e-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee---ec-Ccee--e-EEEECCC-CCEE
Q 026765           98 SGKCSQQA----E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KF-GYEV--N-EIAWNMT-GEMF  164 (233)
Q Consensus        98 ~~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~-~~~~--~-~~~~~~~-~~~~  164 (233)
                      .+......    . .......++++|++..|+++..++.|..||+.+.......   .. ....  . .++++|+ +.++
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            55432222    1 1234456899996556666777888999998765422110   11 1112  2 8999995 5555


Q ss_pred             EEEeCCCeEEEEecCCceeeeEEeeec---------------CceeEEEECCCCCEEEEee-CCCcEEEEecCCcEE
Q 026765          165 FLTTGNGTVEVLTYPSLRPLDTVVAHT---------------AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLC  225 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~  225 (233)
                      ++-..++.|..|+....  ...+.++.               .....++++|+|+++++-+ .++.|+.||+.++..
T Consensus       283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            56667889999986532  33344432               3478899999999888888 889999999877763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.42  E-value=1.1e-09  Score=83.84  Aligned_cols=195  Identities=12%  Similarity=0.056  Sum_probs=138.2

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      .....+.+++++++|+..++...++.|.+|+.. .   ......+......+..+++++++ .++++...++.|..||..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G---RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C---ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC
Confidence            446688999999999988888788999999865 2   22333333444678899998865 566666667899999987


Q ss_pred             CCeeeeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-ee-cCceeeEEEECCCCCEEEEEeCCCe
Q 026765           98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RK-FGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                       ++.. ....   ...+..+++.++++.+++...++.+..+|.. .+.... .. ....+..+.+.++++.+++...++.
T Consensus        92 -g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           92 -GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             -SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             -CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence             5442 2222   2345678899999888777778889999976 333221 11 2345788999999997777767888


Q ss_pred             EEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          173 VEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       173 v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +..++. +++.... ...+...+..++++++++++++....+.|.+||..
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            999987 4433221 11234567899999999887777777889999983

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=1.2e-11  Score=98.53  Aligned_cols=148  Identities=14%  Similarity=0.142  Sum_probs=108.8

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-----------eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----------CSQQAELSGENINITYKPDGTHIAVGNRDDELTILD  136 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d  136 (233)
                      .++.+++++.. .++++|+.+ .+.+|++...+           ......+.+ +..++|  ++++|+++ .++.+.+||
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            57889999875 577888887 45669864322           112233455 778999  89999998 889999999


Q ss_pred             cCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765          137 VRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (233)
Q Consensus       137 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v  215 (233)
                      +++...... ..+...+..+.+.+.  .+++...||.+.+|++.+.....    +...|.|++|||+|  ++.|..||++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            876543322 223345666665433  38888999999999998665432    45689999999999  7889999999


Q ss_pred             EEEecCCcEE--EEee
Q 026765          216 SLWDISEMLC--VRTF  229 (233)
Q Consensus       216 ~iwd~~~~~~--i~~~  229 (233)
                      ++|+....++  .+++
T Consensus       185 ~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEcCCCcccccccee
Confidence            9999987776  6666

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=1.7e-09  Score=83.60  Aligned_cols=207  Identities=12%  Similarity=0.081  Sum_probs=132.7

Q ss_pred             cceeeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ..+.+..+........|+|+++ ++++...++.|..|+...    ...  .+..+...+..+++++++ +++++...++.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~--~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~  108 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVD--VLLDATAFTNGNAVDAQQ-RLVHCEHGRRA  108 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEE--EEEESCSCEEEEEECTTS-CEEEEETTTTE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEE--EEeCCCCccceeeECCCC-CEEEEECCCCE
Confidence            3455666667778899999998 567777789999997631    222  334456678999999975 56665556688


Q ss_pred             EEEEECCCCeeeeeeee-c----CCeeEEEECCCCCeEEE----EcC-------------CCcEEEEEcCCCeeeeeeec
Q 026765           91 VRLWDARSGKCSQQAEL-S----GENINITYKPDGTHIAV----GNR-------------DDELTILDVRKFKPIHRRKF  148 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~  148 (233)
                      |.+||.. ++....... .    ..+..++++|+|+.+++    |..             .+.|..+|..+.+..... .
T Consensus       109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~  186 (305)
T 3dr2_A          109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D  186 (305)
T ss_dssp             EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred             EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence            9999986 443222111 1    12345899999998776    332             245777776544332222 2


Q ss_pred             CceeeEEEECCCCCEEEEEeCC------CeEEEEecCCceee--eEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGN------GTVEVLTYPSLRPL--DTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~--~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      ....+.++|+++++.++++...      +.+.+|+.......  ..+. .....+..++++++|+++++. .+| |.+||
T Consensus       187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~  264 (305)
T 3dr2_A          187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFD  264 (305)
T ss_dssp             ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEEC
T ss_pred             CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEEC
Confidence            2245789999999987777654      78999987643311  1111 112334578999999955544 454 99999


Q ss_pred             cCCcEEEEeee
Q 026765          220 ISEMLCVRTFT  230 (233)
Q Consensus       220 ~~~~~~i~~~~  230 (233)
                      .. ++.+..+.
T Consensus       265 ~~-g~~~~~~~  274 (305)
T 3dr2_A          265 SD-GQLLGHIP  274 (305)
T ss_dssp             TT-SCEEEEEE
T ss_pred             CC-CCEEEEEE
Confidence            84 66666553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=3.6e-09  Score=80.92  Aligned_cols=195  Identities=10%  Similarity=-0.019  Sum_probs=135.7

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      +...+.+++++++|...++...++.|.+|+.. .   .............+..+++.+++ .++++...++.|..+|.. 
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G---GFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-C---CeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-
Confidence            44678999999999988887778889998865 2   22333333344678899999865 576676668899999987 


Q ss_pred             Ceeeeeeee--cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           99 GKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        99 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ++.......  ...+..+++.++++.+++...++.+..+|. ..+......  ....+..+.++++++.+++....+.+.
T Consensus       134 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence            544322111  234567899999986666666788999997 333322111  123477889999998877777788899


Q ss_pred             EEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          175 VLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       175 ~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      .++. +++.... +..+...+.+++++++|+.+++...++.|..||..
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            9987 3332221 22234568899999999977777677899999984

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=7.9e-10  Score=89.18  Aligned_cols=192  Identities=11%  Similarity=0.052  Sum_probs=128.0

Q ss_pred             EEECcCCCEEEEEeCCC--CEEEEecccCCCCceeeE-EEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           26 VAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDI-ELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        26 ~~~~~~~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~-~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      ++|+++++.|+.++.++  .|.+|+.....  ..... .+.. ....+.+++++|+++.+++ +..++.|..||..++..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~  252 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV  252 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCc--eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE
Confidence            88999999999888876  56666654321  11111 1112 4456778999996555555 67788999999987653


Q ss_pred             eee----eeec-CC-ee-EEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeeec--------------CceeeEEEECC
Q 026765          102 SQQ----AELS-GE-NI-NITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF--------------GYEVNEIAWNM  159 (233)
Q Consensus       102 ~~~----~~~~-~~-~~-~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------~~~~~~~~~~~  159 (233)
                      ...    .... .. +. .++++|+ +..+++...++.|..|+.........-..              -.....+++++
T Consensus       253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence            222    1111 11 24 8999995 55555666778899998754311110000              02367899999


Q ss_pred             CCCEEEEEe-CCCeEEEEecCCceeeeEEeee---------------cCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          160 TGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAH---------------TAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       160 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      +|+++++-. .++.|+.|+..+++ +..+.++               -.....++++|++.++++-..++.|+.++++
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            999877877 89999999976665 3445554               2357899999998888888888889887753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=4.7e-10  Score=90.46  Aligned_cols=194  Identities=9%  Similarity=-0.006  Sum_probs=130.5

Q ss_pred             cCCCEEEEEeC-C----CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe---------CCCeEEEEE
Q 026765           30 CTGTKLASGSV-D----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWD   95 (233)
Q Consensus        30 ~~~~~l~s~~~-D----~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~---------~d~~i~iwd   95 (233)
                      ++++++..... +    ++|.+.|..+.  ..+..+..  -..+  .++++|++..++++..         .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--~vv~~I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG--RILGMTDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT--EEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC--EEEEEEEC--CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            45665544443 3    68999987642  22222222  2234  7999999876665542         467899999


Q ss_pred             CCCCeeeeeeeec--------CCeeEEEECCCCCeEEEEcC--CCcEEEEEcCCCeeeeeeecCce--------------
Q 026765           96 ARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYE--------------  151 (233)
Q Consensus        96 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~--------------  151 (233)
                      ..+.+........        .....+.++|||++++++..  ++.+.++|+.+.+.+..+..+..              
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN  235 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence            9998877766553        23456899999999998764  57899999877665433322100              


Q ss_pred             --------------------------------------------------------------------------------
Q 026765          152 --------------------------------------------------------------------------------  151 (233)
Q Consensus       152 --------------------------------------------------------------------------------  151 (233)
                                                                                                      
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g  315 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD  315 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence                                                                                            


Q ss_pred             --ee---EEEECCCCCEEEEEeC----------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEee-CCCc
Q 026765          152 --VN---EIAWNMTGEMFFLTTG----------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGS-ADSL  214 (233)
Q Consensus       152 --~~---~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s-~dg~  214 (233)
                        ..   .+.++++++.+++...          .+.+.++|..+.+.+.++.... ....++|+|+++ ++++.. .++.
T Consensus       316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred             cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCe
Confidence              00   0344455555544432          3468888888877777765332 468899999999 887777 5899


Q ss_pred             EEEEecCCcEEEEeee
Q 026765          215 VSLWDISEMLCVRTFT  230 (233)
Q Consensus       215 v~iwd~~~~~~i~~~~  230 (233)
                      |.|+|+.+++.++++.
T Consensus       395 VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          395 LHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEec
Confidence            9999999999999873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=2e-09  Score=84.18  Aligned_cols=197  Identities=12%  Similarity=0.036  Sum_probs=125.6

Q ss_pred             cEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           22 KVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        22 ~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      ......|+|++. .+++...++.|..|+....   ....  +. ....+.++++++++ +++++ ..+ .|.+||..+++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~--~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASG---RKTV--HA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGV  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEE--EE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cEEE--EE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCc
Confidence            456789999855 5566667889999987532   2222  22 34678999999875 45544 444 49999998776


Q ss_pred             eeeeeeec-----CCeeEEEECCCCCeEEEEcC------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE-e
Q 026765          101 CSQQAELS-----GENINITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-T  168 (233)
Q Consensus       101 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  168 (233)
                      ........     .....+.++|+|+.+++...      .+.|..++  ..+...........+.++|+++++.++.+ .
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence            54322221     12456889999987665432      23455555  33322211111235789999999877655 4


Q ss_pred             CCCeEEEEecC--Cc-ee-----eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 GNGTVEVLTYP--SL-RP-----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 ~~~~v~~~~~~--~~-~~-----~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .++.+.+|+..  ++ +.     +..+......+..++++++|+++++...++.|.+||. +++.++++.
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            57899999975  44 21     1112122345678999999998887777789999998 566666553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=1.5e-09  Score=83.66  Aligned_cols=186  Identities=11%  Similarity=0.039  Sum_probs=121.3

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE-Eec--CcCcEEEEEEcCCCCCEEEEEeC--------
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRG--HADSVDQLCWDPKHADLIATASG--------   87 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~~--h~~~v~~~~~~~~~~~~l~sg~~--------   87 (233)
                      +...+.+++++++|+++++.  ++.|.+||.+..   ....+. ...  ....++.++++|++ +++++...        
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~  125 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVL  125 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBC
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccc
Confidence            45679999999999966554  567888887532   222111 111  12347889999986 46554422        


Q ss_pred             -CCeEEEEECCC-CeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcC--CCeeee-----eee-cCceeeEEE
Q 026765           88 -DKTVRLWDARS-GKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVR--KFKPIH-----RRK-FGYEVNEIA  156 (233)
Q Consensus        88 -d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~~~-----~~~-~~~~~~~~~  156 (233)
                       ...-.+|.+.. ++.............++|+|+++.++ +.+.++.|..||+.  +.....     ... ....+..++
T Consensus       126 ~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~  205 (297)
T 3g4e_A          126 ERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC  205 (297)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE
T ss_pred             cCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE
Confidence             12345555443 33222222223445699999998765 55667889999873  333211     111 123567889


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC-CCCCEEEEee
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID-PMGRYFAVGS  210 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~las~s  210 (233)
                      +.++|+++++...++.|..|+..+++.+..+..+...+++++|. |+++.|..++
T Consensus       206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            99999988888888999999988888888887777789999998 8887654443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.32  E-value=3.7e-10  Score=97.73  Aligned_cols=198  Identities=10%  Similarity=0.030  Sum_probs=123.3

Q ss_pred             EEEEECcCCCEEEEEeCCCC--------------EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC--
Q 026765           24 HSVAWNCTGTKLASGSVDQT--------------ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--   87 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~--------------v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~--   87 (233)
                      ..++|+|| +.|+.++.|+.              |++|++...........+...+...+..+.|+|++..+++++..  
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            57899999 99988887765              78888753221112222222344468899999987655444432  


Q ss_pred             --CCeEEEEECCCC--eeeeeeeec-CCeeEEEECCCCCeEEEEcCC----CcEEEEEcCCC--eeeeeeec-CceeeEE
Q 026765           88 --DKTVRLWDARSG--KCSQQAELS-GENINITYKPDGTHIAVGNRD----DELTILDVRKF--KPIHRRKF-GYEVNEI  155 (233)
Q Consensus        88 --d~~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~--~~~~~~~~-~~~~~~~  155 (233)
                        ...|.+||+.++  ++...+... ...... +.|++..|+..+.+    ..|.+||+.+.  +....... ...+..+
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~  369 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV  369 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence              348999999876  312222222 222333 34889888877653    45899998764  22222222 2235566


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecC-CceeeeEEee-ecCceeEEEECCCCCEEE----EeeCCCcEEEEecCCcE
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVA-HTAGCYCIAIDPMGRYFA----VGSADSLVSLWDISEML  224 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~-~~~~v~~i~~~p~~~~la----s~s~dg~v~iwd~~~~~  224 (233)
                      .+. ++.++++...++..++|..+ +++....+.. +...+..++++|+++.|+    +....+.|.+||+.+++
T Consensus       370 ~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          370 GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            776 55667777788887777654 3444444543 355678899999987665    22345889999998876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=1.7e-10  Score=99.24  Aligned_cols=198  Identities=13%  Similarity=0.162  Sum_probs=121.2

Q ss_pred             CccccEEEEEECcCCCEEEE-----EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC---
Q 026765           18 GHKKKVHSVAWNCTGTKLAS-----GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---   89 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s-----~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~---   89 (233)
                      +|...+..++|||||++||-     |+.+.+|++||+....   .....+.+.  ....++|+ ++.. |+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~~~~~--k~~~~~Ws-Dg~~-l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETPLKDV--KFSGISWL-GNEG-FFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEEEEEE--ESCCCEEE-TTTE-EEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccccCCc--eeccEEEe-CCCE-EEEEEecCccc
Confidence            46667899999999999873     3334679999987532   121122211  12467899 7654 44555553   


Q ss_pred             ----------eEEEEECCCCeeee--eeeecC----CeeEEEECCCCCeEEEEcC----CCcEEEEEcCCCe-eeeeeec
Q 026765           90 ----------TVRLWDARSGKCSQ--QAELSG----ENINITYKPDGTHIAVGNR----DDELTILDVRKFK-PIHRRKF  148 (233)
Q Consensus        90 ----------~i~iwd~~~~~~~~--~~~~~~----~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~  148 (233)
                                .|.+|++.++....  ......    ....+.++|||++|+....    ...+.++|+.+.. ....+..
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                      49999998765321  111111    2457889999998865433    2478999986542 1222221


Q ss_pred             CceeeEEEECCCCCEEEEEeC----CCeEEEEecCCcee--eeEEeeecCceeEEEECCCCCEEEEeeCC-C--cEEEEe
Q 026765          149 GYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S--LVSLWD  219 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~d-g--~v~iwd  219 (233)
                      ......-.++++++.++..+.    ++.+..++......  ...+..|...+.  .|+|++++|+....+ +  .|++||
T Consensus       279 ~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          279 DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            111111125566666655443    36788888876543  345666776665  899999988776654 3  689999


Q ss_pred             cCCcE
Q 026765          220 ISEML  224 (233)
Q Consensus       220 ~~~~~  224 (233)
                      ++.+.
T Consensus       357 ~~g~~  361 (693)
T 3iuj_A          357 YEGKR  361 (693)
T ss_dssp             TTSCE
T ss_pred             CCCCe
Confidence            87543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=1.1e-09  Score=84.80  Aligned_cols=194  Identities=12%  Similarity=0.044  Sum_probs=124.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE--EecC-cCcEEEEEEcCCCCCEEEE----Ee
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRGH-ADSVDQLCWDPKHADLIAT----AS   86 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~--~~~h-~~~v~~~~~~~~~~~~l~s----g~   86 (233)
                      ..+..+.+.+..++++++|+++++...++.|.+|+.+ .   ....+.  ..+. ...+..++++|++ .++++    |.
T Consensus        79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g---~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~  153 (305)
T 3dr2_A           79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G---QAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGL  153 (305)
T ss_dssp             EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGG
T ss_pred             EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C---CEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCc
Confidence            3455566778999999999977766666889888864 1   121111  1111 1346678999875 56665    33


Q ss_pred             C-------------CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC------CcEEEEEcCCCeeeeeee
Q 026765           87 G-------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRK  147 (233)
Q Consensus        87 ~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~  147 (233)
                      .             .+.|..+|..+++..... .......++|+|+++.|+++...      +.|..|++..........
T Consensus       154 ~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~  232 (305)
T 3dr2_A          154 RKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH  232 (305)
T ss_dssp             SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE
Confidence            2             245777777666544333 22344568999999987776554      689999986543111111


Q ss_pred             ----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEE
Q 026765          148 ----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL  217 (233)
Q Consensus       148 ----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~i  217 (233)
                          .......+.+.++|+++++ ..+ .+.+|+. .++.+..+..+. .+..++|+|+++.|..++.++..++
T Consensus       233 ~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence                1123457889999995544 444 5888886 456666665444 5889999999988888887654443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=4.1e-09  Score=79.55  Aligned_cols=201  Identities=13%  Similarity=0.114  Sum_probs=139.1

Q ss_pred             eeeeCccc--cEEEEEECcCCCEEEEEeC--CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           14 REYTGHKK--KVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        14 ~~~~~H~~--~V~~~~~~~~~~~l~s~~~--D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      +++. |..  ....++|++++...++.+.  +++|++.|+.+..  ....+.+..+. ....+++.  +..+.++.-.++
T Consensus        13 ~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           13 NEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTC-CEEEEEEE--TTEEEEEETTCS
T ss_pred             EEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCc-ceEEEEEe--CCEEEEEEecCC
Confidence            4553 543  4689999998765566553  6789999986532  22333333322 22345554  445666777789


Q ss_pred             eEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc------eeeEEEECCCCC
Q 026765           90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY------EVNEIAWNMTGE  162 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~  162 (233)
                      .+.++|..+.+....+... ....  .+++|++.++++..++.+.++|..+.+.+.....+.      ..+.+.|. ++.
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~g~--glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKDGW--GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSSCC--EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCCCcEEEEEECCCCCeE--EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            9999999998887776655 4433  355678888777778899999999888776666432      25677777 675


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeec-------------CceeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHT-------------AGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~  223 (233)
                      .++..-.++.|.++|..+++.+..+....             ...+.|+++|+++ .++++...++|.+-++...
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            55555568899999999998888776321             2458999999986 5667778899988887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.31  E-value=1.6e-09  Score=85.22  Aligned_cols=198  Identities=13%  Similarity=0.076  Sum_probs=130.7

Q ss_pred             ccEEEEEECcCCCEEEEEe--CCCCEEEEecccCCCCceeeEEE-------ecCcCcEEEEEEcCCCCCEEEEEeC----
Q 026765           21 KKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHGKVKDIEL-------RGHADSVDQLCWDPKHADLIATASG----   87 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~--~D~~v~vW~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~l~sg~~----   87 (233)
                      .....++++++|+.+++..  .++.++||.+. .  +..  ..+       .+|...+..+++++++ +++++-..    
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~--g~~--~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q--DGL--IPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T--TEE--EESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHT
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C--CCe--ecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcC
Confidence            6889999999999999864  24447788775 1  111  111       2345679999999875 45554433    


Q ss_pred             -CCeEEEEECCCCeeeeeeeecC-------CeeEEEECCCCCeE-EEEc---CCCcEEEEEcCCCeeeeeee--------
Q 026765           88 -DKTVRLWDARSGKCSQQAELSG-------ENINITYKPDGTHI-AVGN---RDDELTILDVRKFKPIHRRK--------  147 (233)
Q Consensus        88 -d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l-~~~~---~d~~i~i~d~~~~~~~~~~~--------  147 (233)
                       ++.|.+||+.+++....+....       ....++++|++..+ ++..   .++.|.+||+.+.+......        
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence             5789999999888666554421       23568888865454 4444   57889999987544322110        


Q ss_pred             ----------------------cCceeeEEEECCCCCEEEEEeCCC-eEEEEecC---Cc-----eeee--EEeeecCce
Q 026765          148 ----------------------FGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYP---SL-----RPLD--TVVAHTAGC  194 (233)
Q Consensus       148 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~---~~-----~~~~--~~~~~~~~v  194 (233)
                                            ....++.++++++++.++.+...+ .+..++..   ..     +...  ...++....
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p  250 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC  250 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence                                  011357899999999888776654 55555432   10     0011  122444456


Q ss_pred             eEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          195 YCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       195 ~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ..++++++|+++++...++.|.+||.++++
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            789999999999999999999999995565

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=6.1e-09  Score=81.37  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=117.4

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE-Ee-cC-cCcEEEEEEcCCCCCEEEEEeC------CCe
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LR-GH-ADSVDQLCWDPKHADLIATASG------DKT   90 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~-~h-~~~v~~~~~~~~~~~~l~sg~~------d~~   90 (233)
                      ...+.+++|+++|+++++. . ..|.+||....   ....+. .. +. ...+..++++|++ +++++...      .+.
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~  162 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGS  162 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEE
T ss_pred             CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCC---cEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceE
Confidence            4679999999999887765 3 34888887532   222111 11 11 2357899999986 45554432      244


Q ss_pred             EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE-cCCCcEEEEEcC--CC-ee-----eeeee-cCceeeEEEECCC
Q 026765           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVR--KF-KP-----IHRRK-FGYEVNEIAWNMT  160 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~-~~-----~~~~~-~~~~~~~~~~~~~  160 (233)
                      |..+|  +++.............++|+|+++.++.+ ..++.|.+||+.  +. ..     ..... ....+..+.+.++
T Consensus       163 l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~  240 (326)
T 2ghs_A          163 IYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  240 (326)
T ss_dssp             EEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence            55555  45433222222344578999999877544 556889999975  33 21     11111 1234677899999


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC-CCCCEEEEeeC
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID-PMGRYFAVGSA  211 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~las~s~  211 (233)
                      |+++++...++.+..|+. +++.+..+..+...+.+++|+ |+++.|..++.
T Consensus       241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            998888777889999987 566666666666679999998 88877654443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.24  E-value=5e-12  Score=100.72  Aligned_cols=187  Identities=10%  Similarity=0.003  Sum_probs=102.1

Q ss_pred             CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC
Q 026765           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (233)
Q Consensus        31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~  110 (233)
                      ++..+++++.|+.|..||..+..  ..  .++..  ..+.+..+..+ ..++++++.|+.|..||..+++..........
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~--~~--W~~~~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS--IK--WTLKE--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC--EE--EEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--EE--EEecC--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            57899999999999999986532  12  23333  33333333344 34667778999999999988875443322110


Q ss_pred             --ee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE
Q 026765          111 --NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV  187 (233)
Q Consensus       111 --~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  187 (233)
                        .. ...+. ++..+++++.++.+..||..+++.+.......   ....+|+++.+++++.++.+..||..+++..-.+
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence              00 00111 34567778888999999998887765544322   2334568888999999999999999888766554


Q ss_pred             eeecCceeEEEECCCC---CEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          188 VAHTAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       188 ~~~~~~v~~i~~~p~~---~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..+.  .....++++.   ..+++++.||.|..||.++++.+-++.
T Consensus       157 ~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          157 TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            4321  1222333432   567778999999999999998876653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=6.5e-09  Score=82.58  Aligned_cols=197  Identities=12%  Similarity=0.073  Sum_probs=131.0

Q ss_pred             EEEECcCCCEEEEEeC--CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-Cee
Q 026765           25 SVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKC  101 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~~--D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~  101 (233)
                      .++|+|||++|..+..  +++|.|+|+...  ..+..+...+.      ....|.+.+.+++.+.||.+.+.++.. ++.
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~--~vv~tI~v~g~------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--AFKRMLDVPDC------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTT--EEEEEEECCSE------EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCC--cEEEEEECCCc------ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            4799999999887763  689999998653  22333333221      122355566777888999999999876 443


Q ss_pred             eeeee--e--c-CCee-EEEE-CCCCCeEEEEcCCCcEEEEEcCCCe--eeeeee--------cC---ceeeEEEECCCC
Q 026765          102 SQQAE--L--S-GENI-NITY-KPDGTHIAVGNRDDELTILDVRKFK--PIHRRK--------FG---YEVNEIAWNMTG  161 (233)
Q Consensus       102 ~~~~~--~--~-~~~~-~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~--------~~---~~~~~~~~~~~~  161 (233)
                      .....  +  . .... ...| .++|+.++ .+.++.+.+.|+.+..  ......        .+   .....+.+++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence            22111  1  1 1111 2355 46776555 4557899999986543  222221        11   123347778898


Q ss_pred             CEEEEEeC----------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEE-eeCCCcEEEEecCCcEEEEee
Q 026765          162 EMFFLTTG----------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAV-GSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       162 ~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las-~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +.+.+...          .+.+.++|..+.+.+..+... ..++.++++|+++ +|.+ ...++.|.|+|..+++.++++
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence            88877643          357999999999988887643 3678999999996 5555 455899999999999999987


Q ss_pred             ec
Q 026765          230 TK  231 (233)
Q Consensus       230 ~~  231 (233)
                      +.
T Consensus       371 ~~  372 (386)
T 3sjl_D          371 NQ  372 (386)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=2.8e-09  Score=84.50  Aligned_cols=200  Identities=12%  Similarity=0.004  Sum_probs=122.4

Q ss_pred             EEEECcCCCEEEEEe----------CCCCEEEEecccCCCCceeeEEEecC-----cCcEEEEEEcCCCCCEEEEEeC-C
Q 026765           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG-D   88 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~----------~D~~v~vW~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~sg~~-d   88 (233)
                      .++++||++++..+.          .+++|.+||+.+..  .+..+.+.+-     ......++++|++..++++... +
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            699999999988876          37899999987532  3333333211     1224567899987665544323 4


Q ss_pred             CeEEE--EECCCCeeeeeeeecC--------CeeEEEECCC-------------------------------------CC
Q 026765           89 KTVRL--WDARSGKCSQQAELSG--------ENINITYKPD-------------------------------------GT  121 (233)
Q Consensus        89 ~~i~i--wd~~~~~~~~~~~~~~--------~~~~~~~~~~-------------------------------------~~  121 (233)
                      ..+.+  +|..+   .......+        ...-+.++++                                     +.
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~  223 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCC
Confidence            57888  88865   11111110        0000112222                                     22


Q ss_pred             eEEEEcCCCcEEEEEcCCCe--eeeeeec--------Cce---eeEEEECCCCCEEEEEeC---------CCeEEEEecC
Q 026765          122 HIAVGNRDDELTILDVRKFK--PIHRRKF--------GYE---VNEIAWNMTGEMFFLTTG---------NGTVEVLTYP  179 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~--~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~  179 (233)
                      .++..+. +.+.+.|+....  .+.....        +..   ...+.++++++.++++..         .+.+.++|..
T Consensus       224 ~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~  302 (368)
T 1mda_H          224 MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence            2222233 556666664321  1111111        111   122789999998887643         2466799999


Q ss_pred             CceeeeEEeeecCceeEEEECCCCCE-EEEee-CCCcEEEEecCCcEEEEeeec
Q 026765          180 SLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGS-ADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       180 ~~~~~~~~~~~~~~v~~i~~~p~~~~-las~s-~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.+.+..+.... ....++++|+|++ +++.. .++.|.|+|+++++.++++..
T Consensus       303 t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          303 VGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            998888776544 5789999999984 56666 599999999999999998864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=3.7e-09  Score=83.18  Aligned_cols=200  Identities=10%  Similarity=0.027  Sum_probs=129.4

Q ss_pred             eCccccEEEEEECcCCCEEEEEeC-----CCCEEEEecccCCCCceeeEEEec----CcCcEEEEEEcCCCCCEEEEEe-
Q 026765           17 TGHKKKVHSVAWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELRG----HADSVDQLCWDPKHADLIATAS-   86 (233)
Q Consensus        17 ~~H~~~V~~~~~~~~~~~l~s~~~-----D~~v~vW~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~sg~-   86 (233)
                      .+|...+..+++++++++.++-..     +..|.+||+....  .+..+.+..    +......++++++++.++++.. 
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            356788999999999887665433     5789999976321  122233321    2235688999886555666655 


Q ss_pred             --CCCeEEEEECCCCeeeeeeee-------------c-----------------CCeeEEEECCCCCeEEEEcCCC-cEE
Q 026765           87 --GDKTVRLWDARSGKCSQQAEL-------------S-----------------GENINITYKPDGTHIAVGNRDD-ELT  133 (233)
Q Consensus        87 --~d~~i~iwd~~~~~~~~~~~~-------------~-----------------~~~~~~~~~~~~~~l~~~~~d~-~i~  133 (233)
                        .++.|.+||+.+++.......             .                 .....++++|+++.|+.+...+ .+.
T Consensus       141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence              678999999987654332210             0                 1134589999999888776655 455


Q ss_pred             EEEcC---CCee--------eeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeee--cCceeEEEEC
Q 026765          134 ILDVR---KFKP--------IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--TAGCYCIAID  200 (233)
Q Consensus       134 i~d~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~i~~~  200 (233)
                      .++..   ....        +...........++++++|+++++...++.|.+|+..+++. ..+...  ...+.+++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEEC
T ss_pred             EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEEC
Confidence            55432   1100        00001111356789999999999999999999999845543 233222  3457899999


Q ss_pred             CCCCEEEEeeCCCcEEEEe
Q 026765          201 PMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       201 p~~~~las~s~dg~v~iwd  219 (233)
                      ++++++++.+..+.+.+|+
T Consensus       300 ~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          300 SDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TTSCEEEEECCGGGSGGGB
T ss_pred             CCCcEEEEeCccccccccc
Confidence            9999888887666665554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.15  E-value=8.9e-08  Score=77.02  Aligned_cols=189  Identities=17%  Similarity=0.177  Sum_probs=125.0

Q ss_pred             cCCCEE-EEEeCCCCEEEEecccCCC-Cce-eeEE---Ee---cCcCcEEEEEEcCCCCCEEEEEeCC------CeEEEE
Q 026765           30 CTGTKL-ASGSVDQTARVWHIEPHGH-GKV-KDIE---LR---GHADSVDQLCWDPKHADLIATASGD------KTVRLW   94 (233)
Q Consensus        30 ~~~~~l-~s~~~D~~v~vW~~~~~~~-~~~-~~~~---~~---~h~~~v~~~~~~~~~~~~l~sg~~d------~~i~iw   94 (233)
                      +++++| +++..+.+|.|.|+.+... .++ ..++   +.   +.. .-..+...|++  +++++..+      +.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDA--IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence            777776 5566789999999853221 111 1111   10   111 22345566875  66777666      789999


Q ss_pred             ECCCCeeeeeeeecC----CeeEEEECCCCCeEEEEc-------------------CCCcEEEEEcCCCeeeeeeecC--
Q 026765           95 DARSGKCSQQAELSG----ENINITYKPDGTHIAVGN-------------------RDDELTILDVRKFKPIHRRKFG--  149 (233)
Q Consensus        95 d~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~--  149 (233)
                      |..+.+....+....    ..+.+.|+|+++.+++..                   .+.+|.+||+.+.+.+..+..+  
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            999988877776442    234588899999888774                   3688999999988777776664  


Q ss_pred             -ceeeEEEE--CCCCCEEEEEeC------CCeEEEEecCCce--eeeEE--eee----------------cCceeEEEEC
Q 026765          150 -YEVNEIAW--NMTGEMFFLTTG------NGTVEVLTYPSLR--PLDTV--VAH----------------TAGCYCIAID  200 (233)
Q Consensus       150 -~~~~~~~~--~~~~~~~~~~~~------~~~v~~~~~~~~~--~~~~~--~~~----------------~~~v~~i~~~  200 (233)
                       .....+.|  +|++++..++++      ++++.+|..+.++  ..+.+  ...                ...+..|.+|
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             23445555  999999888775      5677766554321  11111  110                2346789999


Q ss_pred             CCCCEEEEeeC-CCcEEEEecC
Q 026765          201 PMGRYFAVGSA-DSLVSLWDIS  221 (233)
Q Consensus       201 p~~~~las~s~-dg~v~iwd~~  221 (233)
                      |||++|..+.. .+.|.+||+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECS
T ss_pred             CCCCEEEEEeCCCCEEEEEEec
Confidence            99999876665 6899999985

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=3.2e-08  Score=74.00  Aligned_cols=187  Identities=16%  Similarity=0.198  Sum_probs=126.1

Q ss_pred             eeeeCcc--ccEEEEEECcCCCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           14 REYTGHK--KKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        14 ~~~~~H~--~~V~~~~~~~~~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ++|. |.  .....|.|+ ++.+..|.+.+|  .|++.|+.+..  ......+.... .--.++.  .+..+.+..-.++
T Consensus        35 ~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~~~-FgeGit~--~g~~ly~ltw~~~  107 (262)
T 3nol_A           35 HSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK--TLQQIELGKRY-FGEGISD--WKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC--EEEEEECCTTC-CEEEEEE--ETTEEEEEESSSS
T ss_pred             EEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc--EEEEEecCCcc-ceeEEEE--eCCEEEEEEeeCC
Confidence            4553 43  335788998 677778888776  89999986532  22333332211 1122343  3445666666789


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC---ce---eeEEEECCCCCE
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YE---VNEIAWNMTGEM  163 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~---~~~~~~~~~~~~  163 (233)
                      .+.+||..+.+...++........++  +++..++....++.+.++|..+.+.+......   .+   ++.+.|. +|+.
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            99999999998888877766555555  56777777666788999999988877666542   22   4557775 6765


Q ss_pred             EEEEeCCCeEEEEecCCceeeeEEeee------------cCceeEEEECCCCCEEEEee
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDTVVAH------------TAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~v~~i~~~p~~~~las~s  210 (233)
                      ++..-.++.|.++|..+++.+..+...            ....+.||++|+++.|...+
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            554446889999999999887776531            12458999999887665555

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.15  E-value=2.8e-08  Score=74.37  Aligned_cols=179  Identities=15%  Similarity=0.125  Sum_probs=124.8

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      .....|.|+ ++.+.++.+.++.|+++|+.+..  ..... +... ..--.+++  .+..+.+..-.++.+.+||..+.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk--v~~~~-l~~~-~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ--PVWME-RLGN-IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS--CSEEE-ECTT-CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCc--EEeEE-CCCC-cceeEEEE--eCCEEEEEEccCCEEEEEECCcCc
Confidence            445788887 45667888888999999987533  22333 4332 11123444  345677777778999999999999


Q ss_pred             eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc------eeeEEEECCCCCEEEEEeCCCeEE
Q 026765          101 CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY------EVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ...++........++  +++..|+.+..++.+.++|..+.+.+.......      .++.+.|. +|+.++..-.++.|.
T Consensus       128 ~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          128 RERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence            888887766655555  567788777778899999999988776665422      34667776 676554444688999


Q ss_pred             EEecCCceeeeEEeee-------------cCceeEEEECCCCCE-EEEe
Q 026765          175 VLTYPSLRPLDTVVAH-------------TAGCYCIAIDPMGRY-FAVG  209 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~-------------~~~v~~i~~~p~~~~-las~  209 (233)
                      ++|..+++.+..+...             ..-.+.||++|+++. ++||
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999887776532             124589999997655 5555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=6.2e-09  Score=89.50  Aligned_cols=196  Identities=10%  Similarity=0.042  Sum_probs=120.1

Q ss_pred             EEEEECcCCCEEEEEeCCCC-------------EEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeC--
Q 026765           24 HSVAWNCTGTKLASGSVDQT-------------ARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASG--   87 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~-------------v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~--   87 (233)
                      ..++|+ ||+.|+.++.|..             |++|++...........+... |...+..+.|+|++..++++.+.  
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            577899 9999999888754             888887543222222222233 44557889999998766666543  


Q ss_pred             -CCeEEEEECCCCe-eeeeeeecC-CeeEEEECCCCCeEEEEc-CC---CcEEEEEcCCCee---eeeeecCceeeEEEE
Q 026765           88 -DKTVRLWDARSGK-CSQQAELSG-ENINITYKPDGTHIAVGN-RD---DELTILDVRKFKP---IHRRKFGYEVNEIAW  157 (233)
Q Consensus        88 -d~~i~iwd~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~d---~~i~i~d~~~~~~---~~~~~~~~~~~~~~~  157 (233)
                       +..|.++|+.++. ....+.... ..... +++++..|+..+ .+   ..|..+|+.+...   .........+.  .|
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             3589999987663 222222222 22222 566666665443 33   5688889876543   11122222232  78


Q ss_pred             CCCCCEEEEEeC-CC--eEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCC----CcEEEEecCCcE
Q 026765          158 NMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEML  224 (233)
Q Consensus       158 ~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~d----g~v~iwd~~~~~  224 (233)
                      +++++.++.... ++  .+.+|+.... ....+. .....+..++++|+++.|+....+    +.+..||+.+++
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            888988877654 43  6777777643 333333 233456677788888876655444    789999998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.13  E-value=1.6e-08  Score=76.24  Aligned_cols=160  Identities=9%  Similarity=0.028  Sum_probs=115.4

Q ss_pred             cEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE-cCCCcEEEEEcCCCeeee
Q 026765           68 SVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIH  144 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~  144 (233)
                      ....+.|++++ .++++.+.  ++.|++.|+.+++...............+.+++..+... -.++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence            35789999874 55555543  679999999999988776655433332333345565544 456889999999988887


Q ss_pred             eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-----CceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-----AGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      ....+ ......++++++.++++..++.+.++|..+.+....+....     ..++.+.|. +++.++....++.|.+-|
T Consensus       101 ~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          101 NFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             EEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence            77655 12233455688888888889999999999888877766332     135678887 676666665788999999


Q ss_pred             cCCcEEEEeee
Q 026765          220 ISEMLCVRTFT  230 (233)
Q Consensus       220 ~~~~~~i~~~~  230 (233)
                      .++++.+.++.
T Consensus       179 ~~tg~V~~~I~  189 (266)
T 2iwa_A          179 AKDGTLLGWIL  189 (266)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.10  E-value=3.1e-07  Score=73.12  Aligned_cols=115  Identities=8%  Similarity=-0.035  Sum_probs=75.7

Q ss_pred             EECcCCCEEEEEeC--CC---CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe---------CCCeEE
Q 026765           27 AWNCTGTKLASGSV--DQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVR   92 (233)
Q Consensus        27 ~~~~~~~~l~s~~~--D~---~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~---------~d~~i~   92 (233)
                      ...|++.++..+..  ..   +|.++|.....   .. .+++.-..+  .++++|++..+.++..         .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS---IL-GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCe---EE-EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence            34467777666543  22   78899876422   11 233322233  8899998765544432         367899


Q ss_pred             EEECCCCeeeeeeeec--------CCeeEEEECCCCCeEEEEcC--CCcEEEEEcCCCeeeee-eec
Q 026765           93 LWDARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKF  148 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~  148 (233)
                      +||..+.+........        .....+.++|||++++++..  ++.|.++| .+.+.+.. ...
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~  166 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS  166 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC
Confidence            9999887766655443        23456899999999998764  47899999 88877665 443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.08  E-value=2.7e-08  Score=82.54  Aligned_cols=189  Identities=15%  Similarity=0.089  Sum_probs=129.3

Q ss_pred             cCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEE-c-CCCCCEEEEE-----------------eCCC
Q 026765           30 CTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D-PKHADLIATA-----------------SGDK   89 (233)
Q Consensus        30 ~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~l~sg-----------------~~d~   89 (233)
                      +||+++..... +..|.+-|+....  ....++++. ......+++ . |++..+++++                 -.++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMK--CDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTE--EEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            47888766554 5668888876432  222234432 234667777 4 7765444332                 3356


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC--------------------------------------c
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--------------------------------------E  131 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------------------------------~  131 (233)
                      .+.+.|..+.+...+....+....++++|+|+++++.+.+.                                      .
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            89999999888777777766666789999999998887553                                      3


Q ss_pred             EEEEEcCC--Cee-eeeeecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCce------------eeeEEeeecCcee
Q 026765          132 LTILDVRK--FKP-IHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLR------------PLDTVVAHTAGCY  195 (233)
Q Consensus       132 i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~------------~~~~~~~~~~~v~  195 (233)
                      +.+.|.++  .+. +..+..+....++.++|||+++++++ .++++.++|..+.+            ....+. -+....
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~  334 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL  334 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence            56666665  333 33444455667899999999988776 57999999997542            122222 234678


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          196 CIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       196 ~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      .++|+|+|....+.-.|+.|.+||++.
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            999999995456677899999999987

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.05  E-value=3e-07  Score=68.14  Aligned_cols=187  Identities=15%  Similarity=0.132  Sum_probs=125.7

Q ss_pred             eeeeCcc--ccEEEEEECcCCCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           14 REYTGHK--KKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        14 ~~~~~H~--~~V~~~~~~~~~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      ++| .|.  +....+.|+. +.+..|.+.+|  .|++.|+.+..  ......+..+.- --.++.  .+.++....-.++
T Consensus        13 ~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~~f-geGi~~--~~~~ly~ltw~~~   85 (243)
T 3mbr_X           13 KRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR--ILQRAEVPPPYF-GAGIVA--WRDRLIQLTWRNH   85 (243)
T ss_dssp             EEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC--EEEEEECCTTCC-EEEEEE--ETTEEEEEESSSS
T ss_pred             EEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC--EEEEEeCCCCcc-eeEEEE--eCCEEEEEEeeCC
Confidence            456 354  4467899986 56667777654  89999986532  223333333221 122333  3456666677789


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC------ceeeEEEECCCCCE
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG------YEVNEIAWNMTGEM  163 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~  163 (233)
                      .+.+||..+.+...++........++  +++..|+++..++.|.++|..+.+.+......      ..++.+.|. +|+.
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            99999999999888887766666665  46677776667889999999988877666543      134566665 6665


Q ss_pred             EEEEeCCCeEEEEecCCceeeeEEeee-------------cCceeEEEECCCCCEEEEee
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDTVVAH-------------TAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~v~~i~~~p~~~~las~s  210 (233)
                      ++..-.+..|.++|..+++.+..+...             ..-.+.||++|+++.|...+
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            544446889999999999887776522             12458899999876655444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=1.1e-06  Score=66.28  Aligned_cols=204  Identities=9%  Similarity=0.006  Sum_probs=127.1

Q ss_pred             ccEEEEEECcCCCEEEE-EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s-~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      .....++|++++..|.. -..++.|.+++++...   .. ............+++++.++.++++-...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            45679999997766554 4457889888875321   11 1222222467889999876667677677789999998654


Q ss_pred             eeeeeeeec-CCeeEEEECCCCCeEEEEcC---CCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEE-eCCCeE
Q 026765          100 KCSQQAELS-GENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTV  173 (233)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v  173 (233)
                      ......... ..+..++++|++..+..+..   .+.|..+++........... ......++++++++.+..+ ...+.|
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence            322222112 34567899997666554443   36788888754221111111 1346789999987666555 567899


Q ss_pred             EEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..++.........+. .......++.. .+..+++...++.|.++|..+++.++++.
T Consensus       192 ~~~~~~g~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          192 ECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEecCCCceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            999986433222222 22344567665 34445555566899999999998888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=5.2e-08  Score=72.88  Aligned_cols=158  Identities=14%  Similarity=0.128  Sum_probs=115.9

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeeee
Q 026765           68 SVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH  144 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~  144 (233)
                      ....+.|+ + +.++.|.+.+|  .|+++|+.+++.................+++..+.... .++.+.++|..+.+.+.
T Consensus        44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            35788887 4 46777777766  89999999999888777666554433334455665444 57889999999998887


Q ss_pred             eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-----CceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-----AGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      ....+.+-..++  ++++.++.+.+++.+.++|..+.+...++....     ..++.+.|. +|+.+|..-.+..|.+.|
T Consensus       122 ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          122 SFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            777654333333  577888888888999999999888887766432     234567776 676666665788999999


Q ss_pred             cCCcEEEEeee
Q 026765          220 ISEMLCVRTFT  230 (233)
Q Consensus       220 ~~~~~~i~~~~  230 (233)
                      .++++.+.++.
T Consensus       199 p~tG~V~~~Id  209 (262)
T 3nol_A          199 PETGKVTGIID  209 (262)
T ss_dssp             TTTCBEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999988765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.03  E-value=2.6e-08  Score=79.14  Aligned_cols=146  Identities=12%  Similarity=0.060  Sum_probs=103.0

Q ss_pred             EEcCCCCCEEEEEeC----CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc----------CCCcEEEEEcC
Q 026765           73 CWDPKHADLIATASG----DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN----------RDDELTILDVR  138 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~  138 (233)
                      ...|++..++++-..    ++.|.+.|..+.+....+....... ++++||+++++++.          .++.+.+||..
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            345665544444332    6799999999998887777655554 99999999988765          35779999999


Q ss_pred             CCeeeeeeecC--------ceeeEEEECCCCCEEEEEeC--CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765          139 KFKPIHRRKFG--------YEVNEIAWNMTGEMFFLTTG--NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       139 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                      +.+.+..+..+        .....+.++|+|++++++..  ++.+.++|..+.+.+.++....  . ...+....+.+++
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~  194 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM  194 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence            98887766543        24667999999999988864  6899999999999888775321  1 1112222345556


Q ss_pred             eeCCCcEEEEecCC
Q 026765          209 GSADSLVSLWDISE  222 (233)
Q Consensus       209 ~s~dg~v~iwd~~~  222 (233)
                      .+.||++.+.++..
T Consensus       195 ~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          195 HCRDGSLAKVAFGT  208 (386)
T ss_dssp             EETTSCEEEEECCS
T ss_pred             ECCCCCEEEEECCC
Confidence            66666666666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.02  E-value=6.2e-08  Score=72.51  Aligned_cols=157  Identities=11%  Similarity=0.002  Sum_probs=115.9

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeee
Q 026765           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRR  146 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~  146 (233)
                      ....+.|+.  ..++.+.+.++.|+++|+.+++..... +....+.....++++.|. +.-.++.+.+||..+.+.+...
T Consensus        56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            357888863  567888899999999999999987777 665544422233444444 4556788999999999988877


Q ss_pred             ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec--C---ceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT--A---GCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~---~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ....+-..++  ++++.++.+.+++.+.++|..+.+.+.++....  .   .++.+.|. +|+.+|..-.+..|.+-|.+
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence            7654433444  568888888889999999999988887766432  2   34566776 67666665578899999999


Q ss_pred             CcEEEEeee
Q 026765          222 EMLCVRTFT  230 (233)
Q Consensus       222 ~~~~i~~~~  230 (233)
                      +++.+.++.
T Consensus       210 TG~V~~~Id  218 (268)
T 3nok_A          210 TGTVVGVID  218 (268)
T ss_dssp             TCBEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999988764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.96  E-value=2.1e-10  Score=91.26  Aligned_cols=145  Identities=10%  Similarity=0.121  Sum_probs=80.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc--eeeE-E
Q 026765           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNE-I  155 (233)
Q Consensus        79 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~-~  155 (233)
                      ...+++++.|+.|..||..+++....... +...+..+..++..+++++.|+.+..||..+++.+.......  .+.. .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp   87 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP   87 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence            35778899999999999999987766655 444444455677778888899999999997766544332211  0100 0


Q ss_pred             EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .. ..+..+++++.++.+..||..+++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+-++
T Consensus        88 ~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           88 CR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             CC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             eE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            01 134567778889999999999888876665443    2456678889999999999999999998876554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=5e-07  Score=66.96  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=115.7

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeee
Q 026765           67 DSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPI  143 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~  143 (233)
                      ..+..+.|++  ..++.|.+.+  ..|+++|+.+++.................+.+..+. +.-.++.+.++|..+.+.+
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3467889975  4566777775  489999999999888777665554433333445554 4456788999999999988


Q ss_pred             eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-----CceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-----AGCYCIAIDPMGRYFAVGSADSLVSLW  218 (233)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~las~s~dg~v~iw  218 (233)
                      .....+.+-..++  ++++.++++.+++.+.++|..+.+.+.++....     ..++.+.+. +|+.+|..-.+..|.+-
T Consensus        99 ~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X           99 ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence            8777654434444  567888888889999999999988887776432     234566665 66666655567899999


Q ss_pred             ecCCcEEEEeee
Q 026765          219 DISEMLCVRTFT  230 (233)
Q Consensus       219 d~~~~~~i~~~~  230 (233)
                      |.++++.+..+.
T Consensus       176 Dp~tG~V~~~id  187 (243)
T 3mbr_X          176 DPASGKVVAWID  187 (243)
T ss_dssp             CTTTCBEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999988765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.95  E-value=4.9e-07  Score=72.78  Aligned_cols=183  Identities=12%  Similarity=0.076  Sum_probs=117.0

Q ss_pred             EEEEECcCCCEEEEEeCC------CCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEe----------
Q 026765           24 HSVAWNCTGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATAS----------   86 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D------~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~----------   86 (233)
                      ..+...|+| .++|+..|      +.|.+.|..+..  .+..++..+.. ..-+.+.|+|++ +.+++..          
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTC
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccc
Confidence            445667899 77777655      788898876422  22222222222 234568889986 4666664          


Q ss_pred             ---------CCCeEEEEECCCCeeeeeeeecC---CeeEEEE--CCCCCeEEEEcC------CCcEEEEEcCCCee--ee
Q 026765           87 ---------GDKTVRLWDARSGKCSQQAELSG---ENINITY--KPDGTHIAVGNR------DDELTILDVRKFKP--IH  144 (233)
Q Consensus        87 ---------~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~------d~~i~i~d~~~~~~--~~  144 (233)
                               ...+|.+||+.+++..+.+....   ....+.|  +|+++++.++.+      ++.|.+|.....+.  ..
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence                     36899999999887777766642   2334545  999999887775      45676654332211  01


Q ss_pred             ee--e------------c-----CceeeEEEECCCCCEEEEEeC-CCeEEEEecCC---ceeeeEEeeecC---------
Q 026765          145 RR--K------------F-----GYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPS---LRPLDTVVAHTA---------  192 (233)
Q Consensus       145 ~~--~------------~-----~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~---~~~~~~~~~~~~---------  192 (233)
                      .+  .            .     +.....+.++++|+++.++.. .+.|.+|+...   .+.+..+...+.         
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G  376 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG  376 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence            00  0            0     123567899999999988865 78999999742   344444433211         


Q ss_pred             -----ceeEEEECCCCCEEEEee
Q 026765          193 -----GCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       193 -----~v~~i~~~p~~~~las~s  210 (233)
                           ....++++|+|++|.++.
T Consensus       377 ~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          377 HKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEc
Confidence                 357899999999988887

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.89  E-value=3.8e-06  Score=65.25  Aligned_cols=209  Identities=9%  Similarity=0.011  Sum_probs=126.4

Q ss_pred             eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec------------------CcCcEEEEEEcCC
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------------HADSVDQLCWDPK   77 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~------------------h~~~v~~~~~~~~   77 (233)
                      +.+.-..-.+++|+++++++.++..++.|..|+....   .........                  .......+++.++
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence            4443344567889999998888888999988876431   122111110                  0124678899873


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeee-ec----CCeeEEEECC-CCCeEEEEcC-----------------CCcEEE
Q 026765           78 HADLIATASGDKTVRLWDARSGKCSQQAE-LS----GENINITYKP-DGTHIAVGNR-----------------DDELTI  134 (233)
Q Consensus        78 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~l~~~~~-----------------d~~i~i  134 (233)
                      +++++ .+...+.|..+|..++....... ..    .....+++.+ +|+..++...                 ++.+..
T Consensus        91 ~g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           91 NNQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            34454 44445558888876553222111 11    1245688999 8876665432                 356888


Q ss_pred             EEcCCCeeeeeeecCceeeEEEECCCCCEEEEE-eCCCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      +|..+.+...........+.++++++++.++++ ..++.|..++.....  ....+..... ...++++++|+++++...
T Consensus       170 ~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          170 YDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             EeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            887655432221112345678999999866655 567899999876321  1111221222 678999999987766544


Q ss_pred             ----------CCcEEEEecCCcEEEEeee
Q 026765          212 ----------DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       212 ----------dg~v~iwd~~~~~~i~~~~  230 (233)
                                .+.|..+|.. ++.+..|.
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~  276 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF-GNILEVIP  276 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred             cccccccCCCccEEEEECCC-CCEEEEEE
Confidence                      4678888874 66666654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=4e-07  Score=78.00  Aligned_cols=158  Identities=15%  Similarity=0.145  Sum_probs=111.4

Q ss_pred             EEEEcCCCCCEEEEEeCCC-------------------eEEEEECCCCeeeeeeeecC----------CeeEEEECCCC-
Q 026765           71 QLCWDPKHADLIATASGDK-------------------TVRLWDARSGKCSQQAELSG----------ENINITYKPDG-  120 (233)
Q Consensus        71 ~~~~~~~~~~~l~sg~~d~-------------------~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~-  120 (233)
                      .++++|++ .+++.+..++                   .|..+|..+++..-.+....          ...-+....+| 
T Consensus       247 ~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            46777765 4666666554                   58999999998765544321          11222333466 


Q ss_pred             --CeEEEEcCCCcEEEEEcCCCeeeeeeecCc------------e------------------------eeEEEECCCCC
Q 026765          121 --THIAVGNRDDELTILDVRKFKPIHRRKFGY------------E------------------------VNEIAWNMTGE  162 (233)
Q Consensus       121 --~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~------------------------~~~~~~~~~~~  162 (233)
                        ..++.+..+|.+.++|.++++.+.......            .                        ...++++|+..
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              578889999999999999888765544221            0                        12467788888


Q ss_pred             EEEEEeC-------------------------------------------CCeEEEEecCCceeeeEEeeecCceeEEEE
Q 026765          163 MFFLTTG-------------------------------------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAI  199 (233)
Q Consensus       163 ~~~~~~~-------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~  199 (233)
                      ++++...                                           .|.+..||..+++..-.+. +..++....+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~  484 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTL  484 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcce
Confidence            8777543                                           2789999999988776654 4444555556


Q ss_pred             CCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          200 DPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       200 ~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ...+..++.++.||.+++||+++++.+.+|.
T Consensus       485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            6678888889999999999999999998885

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=1.3e-07  Score=76.34  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc----------CCCcEEEEEcCCCeeeeeeecC--------c
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN----------RDDELTILDVRKFKPIHRRKFG--------Y  150 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~--------~  150 (233)
                      +.|.++|..+.+....+...... .++++||+++++++.          .++.|.++|..+.+.+..+..+        .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            79999999999988888777666 899999999988776          3678999999998887766543        2


Q ss_pred             eeeEEEECCCCCEEEEEeC--CCeEEEEecCCceeeeEEee
Q 026765          151 EVNEIAWNMTGEMFFLTTG--NGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~  189 (233)
                      ....+.++|+|++++++..  ++.+.++|..+.+.+..+..
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            4567899999999998864  68999999999888877653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.83  E-value=6.4e-06  Score=62.11  Aligned_cols=158  Identities=10%  Similarity=0.028  Sum_probs=100.7

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeee
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIH  144 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~  144 (233)
                      .....++|++.++.++++-..++.|..+|+..+......... ..+..++++|++..+. +....+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            356789999876677777777889999998765432222111 3456789998765555 44556789999986432211


Q ss_pred             eeecC-ceeeEEEECCCCCEEEEEeC---CCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEE-EEeeCCCcEEEE
Q 026765          145 RRKFG-YEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYF-AVGSADSLVSLW  218 (233)
Q Consensus       145 ~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l-as~s~dg~v~iw  218 (233)
                      ....+ .....+++++++..+..+..   .+.+..++.+. .....+. ........++++|++..| ++-...+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            12222 34678899997666555543   46787777643 2222221 222456889999987665 555566889999


Q ss_pred             ecCCcEE
Q 026765          219 DISEMLC  225 (233)
Q Consensus       219 d~~~~~~  225 (233)
                      |++....
T Consensus       195 ~~~g~~~  201 (267)
T 1npe_A          195 NPAQPGR  201 (267)
T ss_dssp             ETTEEEE
T ss_pred             ecCCCce
Confidence            9985443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.78  E-value=4.8e-07  Score=77.55  Aligned_cols=183  Identities=12%  Similarity=0.032  Sum_probs=120.2

Q ss_pred             EEEEECcCCCEEEEEeCCC-------------------CEEEEecccCCCCceeeEEEecCc-------CcEEEEEEcCC
Q 026765           24 HSVAWNCTGTKLASGSVDQ-------------------TARVWHIEPHGHGKVKDIELRGHA-------DSVDQLCWDPK   77 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~-------------------~v~vW~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~   77 (233)
                      ..++++|++..++.+..++                   +|..+|..+..  .....+...|.       .....+....+
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKIA  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccCCCcEEEecccC
Confidence            3578889998888777654                   47777765422  22222322231       11222222223


Q ss_pred             CC--CEEEEEeCCCeEEEEECCCCeeeeeeeecCCe------------------------------------eEEEECCC
Q 026765           78 HA--DLIATASGDKTVRLWDARSGKCSQQAELSGEN------------------------------------INITYKPD  119 (233)
Q Consensus        78 ~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~  119 (233)
                      +.  ..++.++.+|.+.++|..+++...........                                    ..++++|+
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~  403 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ  403 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence            32  57889999999999999999875543321100                                    13678888


Q ss_pred             CCeEEEEcC-------------------------------------------CCcEEEEEcCCCeeeeeeecCceeeEEE
Q 026765          120 GTHIAVGNR-------------------------------------------DDELTILDVRKFKPIHRRKFGYEVNEIA  156 (233)
Q Consensus       120 ~~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~  156 (233)
                      ...+++...                                           .+.|..||+.+.+.+...+.+.+.....
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~  483 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT  483 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcc
Confidence            888776533                                           1679999999998887777655555555


Q ss_pred             ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCE-EEE
Q 026765          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRY-FAV  208 (233)
Q Consensus       157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~-las  208 (233)
                      +...+..++.++.+|.+++||..+++.+.++.... ....-+.|.++|+. +++
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            56678888889999999999999999988876433 22344667778864 444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.78  E-value=4.1e-07  Score=75.57  Aligned_cols=196  Identities=16%  Similarity=0.170  Sum_probs=128.7

Q ss_pred             ccEEEEEE-C-cCCCEEEEEe------------------CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCC
Q 026765           21 KKVHSVAW-N-CTGTKLASGS------------------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD   80 (233)
Q Consensus        21 ~~V~~~~~-~-~~~~~l~s~~------------------~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   80 (233)
                      .....+++ + |++++++.++                  .++.|.+.|.++  .....++...+.   -..++++|++. 
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t--~~v~~qI~Vgg~---pd~~~~spdGk-  207 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK--WEVAWQVLVSGN---LDNCDADYEGK-  207 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT--TEEEEEEEESSC---CCCEEECSSSS-
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC--CeEEEEEEeCCC---ccceEECCCCC-
Confidence            34778887 5 8999987774                  345778877753  222333333332   23456778754 


Q ss_pred             EEEEEeCCC--------------------------------------eEEEEECCC--Cee-eeeeeecCCeeEEEECCC
Q 026765           81 LIATASGDK--------------------------------------TVRLWDARS--GKC-SQQAELSGENINITYKPD  119 (233)
Q Consensus        81 ~l~sg~~d~--------------------------------------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~  119 (233)
                      ++++.+.+.                                      .|.|.|.++  ++. ..........-.+.++||
T Consensus       208 ~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPD  287 (595)
T 1fwx_A          208 WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPD  287 (595)
T ss_dssp             EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTT
T ss_pred             EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCC
Confidence            444555432                                      366777766  333 344555556667999999


Q ss_pred             CCeEEEEc-CCCcEEEEEcCCCe------------eeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC------
Q 026765          120 GTHIAVGN-RDDELTILDVRKFK------------PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS------  180 (233)
Q Consensus       120 ~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------  180 (233)
                      |+++++++ .+..+.++|+.+.+            .+.....+.....++|+++|..+++.--++++..|++..      
T Consensus       288 Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~  367 (595)
T 1fwx_A          288 KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYA  367 (595)
T ss_dssp             SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred             CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhc
Confidence            99887665 56889999998653            233455567788999999995455566799999999865      


Q ss_pred             ----ceeeeEEeeecCce-----eEEEECCCCCEEEEeeC---CCcE----------EEEecCC
Q 026765          181 ----LRPLDTVVAHTAGC-----YCIAIDPMGRYFAVGSA---DSLV----------SLWDISE  222 (233)
Q Consensus       181 ----~~~~~~~~~~~~~v-----~~i~~~p~~~~las~s~---dg~v----------~iwd~~~  222 (233)
                          .+.+.++..|-.+-     ..+..+|||++|.++..   |+.+          .++|+..
T Consensus       368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence                45566665554321     23456899999988763   5542          8888863

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.77  E-value=1.2e-05  Score=62.40  Aligned_cols=194  Identities=9%  Similarity=-0.016  Sum_probs=115.3

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE--Eec-CcCcEEEEEEcC-CCCCEEEEEeC----------
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRG-HADSVDQLCWDP-KHADLIATASG----------   87 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~--~~~-h~~~v~~~~~~~-~~~~~l~sg~~----------   87 (233)
                      ....+++++++..|..+...+.|.+++....   ....+.  ..+ .......+++.+ ++ .+.++-..          
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccce
Confidence            5788999983334444444455777765421   111110  111 113467889998 65 56555322          


Q ss_pred             -------CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE-cCCCcEEEEEcCCC---eeeeeeecCceeeEEE
Q 026765           88 -------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKF---KPIHRRKFGYEVNEIA  156 (233)
Q Consensus        88 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~  156 (233)
                             ++.|..+|..+++.......-.....++++|+++.+.++ ...+.|..+++...   +......... ...++
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK  235 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred             ehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence                   367888888766543322222334568999999866554 56688999998642   1111111222 67789


Q ss_pred             ECCCCCEEEEEeC----------CCeEEEEecCCceeeeEEeeec----CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          157 WNMTGEMFFLTTG----------NGTVEVLTYPSLRPLDTVVAHT----AGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       157 ~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +.++|+++++...          .+.+..++. .++.+..+....    ..+.++++ .+++++++...++.|.++++..
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            9999987776654          466777775 456655554332    34566666 4566667766788999999864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.73  E-value=2.7e-06  Score=73.11  Aligned_cols=158  Identities=13%  Similarity=0.122  Sum_probs=108.0

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-------------------EEEEECCCCeeeeeeeecC----------CeeEEEECCCCC
Q 026765           71 QLCWDPKHADLIATASGDKT-------------------VRLWDARSGKCSQQAELSG----------ENINITYKPDGT  121 (233)
Q Consensus        71 ~~~~~~~~~~~l~sg~~d~~-------------------i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~  121 (233)
                      .++++|+. .+++.+..++.                   |..+|..+++..-.+....          .........+|+
T Consensus       239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            46777764 56777777764                   9999999998766554321          111112222554


Q ss_pred             ---eEEEEcCCCcEEEEEcCCCeeeeeeecCc----------------------------------------eeeEEEEC
Q 026765          122 ---HIAVGNRDDELTILDVRKFKPIHRRKFGY----------------------------------------EVNEIAWN  158 (233)
Q Consensus       122 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------------------------~~~~~~~~  158 (233)
                         .++.+..+|.+.++|.++++.+...+...                                        ....++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               67888899999999998888764322110                                        11236777


Q ss_pred             CCCCEEEEEeC---------------------------------------------CCeEEEEecCCceeeeEEeeecCc
Q 026765          159 MTGEMFFLTTG---------------------------------------------NGTVEVLTYPSLRPLDTVVAHTAG  193 (233)
Q Consensus       159 ~~~~~~~~~~~---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~  193 (233)
                      |+.+++++...                                             +|.+..||..+++..-.+..+. +
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~  476 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-I  476 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-C
Confidence            77777776522                                             3779999999998876665433 3


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +..-.+...+..++.|+.||.++.||.++|+.+-+|.
T Consensus       477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            3333555567889999999999999999999988875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.68  E-value=3.8e-07  Score=72.29  Aligned_cols=87  Identities=9%  Similarity=0.083  Sum_probs=67.5

Q ss_pred             EEECCCCCeEEEEcC---------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE-EEEe-CCCeEEEEecCCce
Q 026765          114 ITYKPDGTHIAVGNR---------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-FLTT-GNGTVEVLTYPSLR  182 (233)
Q Consensus       114 ~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~  182 (233)
                      ++++|+++++.++..         ++.+.++|+.+.+.+..+..+.....+.++++++.+ ++.. .++.+.++|..+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            679999998887543         235669999999888888777789999999999854 4555 58999999999999


Q ss_pred             eeeEEeeecCceeEEEECC
Q 026765          183 PLDTVVAHTAGCYCIAIDP  201 (233)
Q Consensus       183 ~~~~~~~~~~~v~~i~~~p  201 (233)
                      .+.++.... ....+++.+
T Consensus       349 vv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          349 DQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             EEEECCCCS-CCCEEECCC
T ss_pred             EEEEEECCC-CCCEEEeec
Confidence            988876443 335666544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.64  E-value=3.5e-06  Score=72.38  Aligned_cols=184  Identities=13%  Similarity=0.066  Sum_probs=119.2

Q ss_pred             EEEECcCCCEEEEEeCCCC-------------------EEEEecccCCCCceeeEEEecCc-------CcEEEEEEcCCC
Q 026765           25 SVAWNCTGTKLASGSVDQT-------------------ARVWHIEPHGHGKVKDIELRGHA-------DSVDQLCWDPKH   78 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~~D~~-------------------v~vW~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~   78 (233)
                      .++++|++..++.+..++.                   |..||..+..  .....+...|.       .+........++
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            6788899999988887763                   8888876532  22222222232       112212221122


Q ss_pred             C--CEEEEEeCCCeEEEEECCCCeeeeeeeecC---------------------------------------C-eeEEEE
Q 026765           79 A--DLIATASGDKTVRLWDARSGKCSQQAELSG---------------------------------------E-NINITY  116 (233)
Q Consensus        79 ~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------~-~~~~~~  116 (233)
                      .  ..++.++.+|.+.++|.++++.........                                       . -..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            1  367889999999999999998753221110                                       0 012678


Q ss_pred             CCCCCeEEEEcC---------------------------------------------CCcEEEEEcCCCeeeeeeecCce
Q 026765          117 KPDGTHIAVGNR---------------------------------------------DDELTILDVRKFKPIHRRKFGYE  151 (233)
Q Consensus       117 ~~~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~  151 (233)
                      +|+...+++...                                             ++.+..||+.+++.+...+.+.+
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~  476 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI  476 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC
Confidence            888777766522                                             36799999999988877766554


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecC-ceeEEEECCCCC-EEEEee
Q 026765          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA-GCYCIAIDPMGR-YFAVGS  210 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~-~las~s  210 (233)
                      ...-.+...+..++.++.||.++.||.++++.+-++..... ...-+.|..+|+ |+++.+
T Consensus       477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            44445556788899999999999999999999887764332 224467778886 455443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.60  E-value=2.7e-05  Score=61.64  Aligned_cols=145  Identities=17%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeeecCCee--------EEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765           81 LIATASGDKTVRLWDARSGKCSQQAELSGENI--------NITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGY  150 (233)
Q Consensus        81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  150 (233)
                      .++.+..++.+..+|..+++............        .+...|  .+..+.+++.++.+..+|.++.+.+.......
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~  269 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS  269 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC
Confidence            56678889999999999887655444321100        000111  24577778889999999998887766554332


Q ss_pred             eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeee-cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                       ......  ++..+++++.++.+..+|..+++..-..... .........  .+..|..++.+|.+..+|.++++.+..+
T Consensus       270 -~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          270 -VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             -EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             -CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence             222222  4677888888999999999888766544311 111222222  2567888999999999999999887665


Q ss_pred             e
Q 026765          230 T  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       345 ~  345 (376)
T 3q7m_A          345 K  345 (376)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.59  E-value=2.4e-05  Score=61.87  Aligned_cols=190  Identities=8%  Similarity=0.021  Sum_probs=111.7

Q ss_pred             CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecC-------cCcE-EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------ADSV-DQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (233)
Q Consensus        31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h-------~~~v-~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  102 (233)
                      ++..+..++.++.|..+|..+..  ......+...       ...+ ..+..  .+ ..++.++.++.|..+|..+++..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~v~~~~g~l~a~d~~tG~~~  126 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTV--SG-GHVYIGSEKAQVYALNTSDGTVA  126 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceE--eC-CEEEEEcCCCEEEEEECCCCCEE
Confidence            36678888889999999876432  2222222111       1222 22232  22 35667889999999999999876


Q ss_pred             eeeeecCCeeE-EEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceee------EEEECCCCCEEEEEeCCCeEEE
Q 026765          103 QQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN------EIAWNMTGEMFFLTTGNGTVEV  175 (233)
Q Consensus       103 ~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~  175 (233)
                      ........... ...  .+..+++++.++.+..+|..+++.+.......+..      ....  .+..++++..++.+..
T Consensus       127 W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          127 WQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSA  202 (376)
T ss_dssp             EEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEE
T ss_pred             EEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEE
Confidence            55544433221 112  23477788889999999998887776555432221      1111  2456777888899999


Q ss_pred             EecCCceeeeEEeeecCc-------eeEEEECC--CCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          176 LTYPSLRPLDTVVAHTAG-------CYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~-------v~~i~~~p--~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +|..+++..-........       +..+.-.|  .+..+..++.++.+..+|.++++.+-++
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            998887765544321100       00000111  2356666677788888888777665443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.52  E-value=0.00013  Score=58.22  Aligned_cols=204  Identities=9%  Similarity=0.007  Sum_probs=121.4

Q ss_pred             ccEEEEEECcCCCEEE-EEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~-s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      .....++|++.+..|. +-...+.|..++++..   .... .+.........+++++.++.++++-...+.|.+.++...
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~-~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEE-VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEEE-EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcEE-EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            4467899997666554 4445677777776532   1111 122222344567888766667677777788999888654


Q ss_pred             eeeeeeeec-CCeeEEEECCCCCeEEEEc-CC-CcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEE-eCCCeEE
Q 026765          100 KCSQQAELS-GENINITYKPDGTHIAVGN-RD-DELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT-TGNGTVE  174 (233)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~v~  174 (233)
                      ......... ..+..++++|.+..|.... .. +.|..+++...........+ ...+.++++++++.+..+ ...+.|.
T Consensus       192 ~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            322222211 3456789998766655443 34 67888887643322222222 246789999776666555 5578898


Q ss_pred             EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .+++........+.........+++ ..+..+.+-...+.|..+|..++..++++
T Consensus       272 ~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          272 RANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            8887532222122222345677888 34556667667788999986666544443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.51  E-value=0.0002  Score=56.34  Aligned_cols=203  Identities=8%  Similarity=-0.013  Sum_probs=120.7

Q ss_pred             cEEEEEECcCCCEEEEE-eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           22 KVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~-~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      ....++|++.+..|.-+ ...+.|..++++...   ... .+.........+++++.++.++++-...+.|.+.++....
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~-~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEE-VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEE-EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceE-EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence            46788999766655444 456777777765321   111 1222223456788887666777777777899999987543


Q ss_pred             eeeeeeec-CCeeEEEECCCCCeEE-EEcCC-CcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEE-eCCCeEEE
Q 026765          101 CSQQAELS-GENINITYKPDGTHIA-VGNRD-DELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTVEV  175 (233)
Q Consensus       101 ~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~d-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~  175 (233)
                      ........ ..+..++++|.+..|. +-... +.|..+++........... ....+.++++++++.+..+ ...+.|..
T Consensus       150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            22222111 3456789998665554 44444 7788888764322221111 1246789999876666555 55788999


Q ss_pred             EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +++........+.........+++. .+..+.+-...+.|..+|..+++.++++
T Consensus       230 ~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          230 ANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            9875422211122223455778883 4556666667788888886666544443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.50  E-value=0.00018  Score=55.38  Aligned_cols=194  Identities=14%  Similarity=0.067  Sum_probs=117.0

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-C-eEEEEECCC
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K-TVRLWDARS   98 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-~-~i~iwd~~~   98 (233)
                      .....++|+++++.+++-..++.|..|+.+.   .....  + ........+++.+++. ++++.... + .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g---~~~~~--~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---NQQIH--A-TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC---CEEEE--E-ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC---ceEEE--E-eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCC
Confidence            4577899999999777777788888887642   11111  1 1234678899998864 55554332 2 466677777


Q ss_pred             CeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeee--------eec-C-ceeeEEEECCCCCEEE
Q 026765           99 GKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHR--------RKF-G-YEVNEIAWNMTGEMFF  165 (233)
Q Consensus        99 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~--------~~~-~-~~~~~~~~~~~~~~~~  165 (233)
                      ++.........  ....++..+++..+++...++.+..+|....+ .+..        ... . ...+.+  +++++.++
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            76543332221  12234445555445555567888888876432 1110        000 0 123445  67777665


Q ss_pred             EE-eCCCeEEEEecCC-cee--eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          166 LT-TGNGTVEVLTYPS-LRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       166 ~~-~~~~~v~~~~~~~-~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      ++ ..++.|..++... ++.  ...+. .......++++++|+++++....+.|.++|.. ++.
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence            55 5678999999864 221  11111 12345678999999988887778899999976 544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.46  E-value=0.0003  Score=56.37  Aligned_cols=209  Identities=10%  Similarity=0.005  Sum_probs=125.5

Q ss_pred             ccccEEEEEECcCCCEEEEE-eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~-~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      ....+..++|++.+..|.-+ ...+.|+.++++...........+.........+++++.++++.++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567899999876665444 45677877776531100011112222345677888887666677777778899999987


Q ss_pred             CCeeeeeeee-cCCeeEEEECCCCCeEEEEc-C-CCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEE-eCCCe
Q 026765           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGN-R-DDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT-TGNGT  172 (233)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~  172 (233)
                      .......... -..+..++++|.+.+|.... . .+.|...++............ ...+.++++++++.+..+ ...+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            6543332221 23466789998766655443 2 367888887653332222222 356789999877776666 45788


Q ss_pred             EEEEecCCceeeeEEee---ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          173 VEVLTYPSLRPLDTVVA---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      |..++++... ...+..   .......+++. .+..+.+-...+.|..+|..+++.+.++
T Consensus       270 I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          270 ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             EEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            9999875422 222221   12345677773 3455666677788999997777554443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.44  E-value=0.00027  Score=54.71  Aligned_cols=208  Identities=11%  Similarity=0.009  Sum_probs=123.5

Q ss_pred             cccEEEEEECcCCCEEE-EEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           20 KKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~-s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      ......++|++++..|. +-..++.|..++++...........+.........+++++.++++.++-..++.|.+.|+..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34567999998766554 44456888888875311001111122222234567888776666666667788999999875


Q ss_pred             Ceeeeeee-ecCCeeEEEECCCCCeEEEEcC-C-CcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE-eCCCeE
Q 026765           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT-TGNGTV  173 (233)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~v  173 (233)
                      ........ .-..+..++++|.+..|..... . +.|..+++.......... .-...+.++++++++.+..+ ...+.|
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            44322222 1234567899987666554443 3 678888875432211111 12346789999877766655 456799


Q ss_pred             EEEecCCceeeeEEee---ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          174 EVLTYPSLRPLDTVVA---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       174 ~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      ..++++. .....+..   .......+++. .+..+.+-...+.|..+|..+++.++++
T Consensus       189 ~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          189 SSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            9999863 22222222   12345677875 3566666677788999998777655444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.44  E-value=6.7e-05  Score=57.90  Aligned_cols=183  Identities=12%  Similarity=0.021  Sum_probs=111.3

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-C
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-E  110 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~  110 (233)
                      +..+..++.++.+..+|.. ..    ...........+.++...+++ . +..|+.++.|..+|.. ++......... .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~  178 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GT----EKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAI  178 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SC----EEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CC----EEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCc
Confidence            5566677778888888764 21    122233333445555665543 3 4567788999999998 66554444332 2


Q ss_pred             eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (233)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  189 (233)
                      ...+...+++..+ +++  +.+..+| .+.+....... ...+.++...+++. +.+++.++.+..++. +++.+..+..
T Consensus       179 ~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~  252 (330)
T 3hxj_A          179 TSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT  252 (330)
T ss_dssp             CSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             eeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC
Confidence            3345666777644 444  7899999 55554444332 23466677777665 555666777888874 4555544444


Q ss_pred             ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       190 ~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ....+.++...+++ .|..++.+|.|..+|. +++.+..+.
T Consensus       253 ~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          253 GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence            33334455666555 5666788888999996 676665543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.42  E-value=4.1e-05  Score=59.13  Aligned_cols=188  Identities=14%  Similarity=0.010  Sum_probs=111.9

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ...+.++...+++. +..++.++.+..++.. ..  ..  ..+......+.++...+++ .++ .++  +.|..+| .++
T Consensus       136 ~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~--~~--~~~~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          136 KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT--EK--WRFKTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDG  204 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC--EE--EEEECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTS
T ss_pred             CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC--Ee--EEEecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCC
Confidence            34455556666666 4456677888888865 21  11  2233334456666665553 444 444  7899999 666


Q ss_pred             eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc-eeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765          100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-EVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (233)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~  177 (233)
                      +........ ....++...+++. +.+++.++.+..+|. +.+......... ....+....++ .+.+++.+|.+..++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          205 TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence            544433332 2344567777764 555667778888874 344443333222 22334444444 566777888899998


Q ss_pred             cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      . +++....+......+.++..+++++ |..|+.+|.+++.....-
T Consensus       282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          282 P-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             T-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             C-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            5 5666555554455667788878776 455889999999877643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.42  E-value=0.00031  Score=54.45  Aligned_cols=204  Identities=7%  Similarity=-0.024  Sum_probs=122.6

Q ss_pred             ccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ....+++|++.+..| .+-...+.|..++++.....  . ..+.........+++.+.++.++++-...+.|.++++...
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--Q-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--C-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--E-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            346688999865554 55456777888877542111  1 1122222345678888766667677677789999998754


Q ss_pred             eeeeee-eecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEE-eCCCeEE
Q 026765          100 KCSQQA-ELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTVE  174 (233)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~  174 (233)
                      ...... ..-..+..++++|.+..|....  ..+.|..+++........... -...+.++++++++.+..+ ...+.|.
T Consensus       112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            322222 1123456788888766655444  357788888764322211111 1246789999876666555 5678899


Q ss_pred             EEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          175 VLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       175 ~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      .++++... ...+ .........+++.. +..+.+-...+.|..+|..+++.++++
T Consensus       192 ~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          192 KSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEETTSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            99875322 2222 22334567788764 455666667788999998777654443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.41  E-value=0.00012  Score=54.83  Aligned_cols=167  Identities=12%  Similarity=0.200  Sum_probs=110.1

Q ss_pred             EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      .+++-...+..++|+|++..+++....++.|...|.. ++..+...+.  .....+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999876677778888999999997 7766666554  345568888888776766667788888875


Q ss_pred             CCee---eeeeec-------CceeeEEEECCCCCEEEEEeCCCeEEEEecC---CceeeeEEe-------eecCceeEEE
Q 026765          139 KFKP---IHRRKF-------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVV-------AHTAGCYCIA  198 (233)
Q Consensus       139 ~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~-------~~~~~v~~i~  198 (233)
                      ....   +.....       +.....++|++.++.++++.+.....+|.++   ....+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            4332   122211       2235789999999888877776555666553   111111110       1223467899


Q ss_pred             ECCCCCE-EEEeeCCCcEEEEecCCcEEEEee
Q 026765          199 IDPMGRY-FAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       199 ~~p~~~~-las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      ++|.... ++.....+.+.++|.+ ++.+..+
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~  210 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEM  210 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence            9997654 5555567889999976 5454443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.40  E-value=8e-05  Score=64.64  Aligned_cols=191  Identities=15%  Similarity=0.121  Sum_probs=102.2

Q ss_pred             cEEEEEEC-cCCCEEEEEe-CCC----CEEEEecccC-CCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC----Ce
Q 026765           22 KVHSVAWN-CTGTKLASGS-VDQ----TARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT   90 (233)
Q Consensus        22 ~V~~~~~~-~~~~~l~s~~-~D~----~v~vW~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d----~~   90 (233)
                      .+...+|| |||++||-+. .+|    +|+++|+... ..  +.. .+..   ....++|+|++..++++...+    ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~-~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD-KVSG---TNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC-CEEE---ECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc-cccC---ceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            67889999 9999887443 233    4888888753 21  110 1111   134678999876666554322    35


Q ss_pred             EEEEECCCCeee--eeeeec--CCeeEEEECCCCCeEEEEcC---CCcEEEEEcCCCe-ee--eeee--cCceeeEEEEC
Q 026765           91 VRLWDARSGKCS--QQAELS--GENINITYKPDGTHIAVGNR---DDELTILDVRKFK-PI--HRRK--FGYEVNEIAWN  158 (233)
Q Consensus        91 i~iwd~~~~~~~--~~~~~~--~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~~~--~~~~~~~~~~~  158 (233)
                      |.++++.++...  ..+...  .....+.|+|||++|+....   ...+.++|+.+.. ..  ....  .........|+
T Consensus       249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            777888766422  111111  23456789999999886553   3357788886541 11  1111  11223334444


Q ss_pred             CCCCEE-EEEeCC--C--eEEEEecCCceeeeE-EeeecCc--eeEEEECCCCCEEEEeeCCCc--EEEEec
Q 026765          159 MTGEMF-FLTTGN--G--TVEVLTYPSLRPLDT-VVAHTAG--CYCIAIDPMGRYFAVGSADSL--VSLWDI  220 (233)
Q Consensus       159 ~~~~~~-~~~~~~--~--~v~~~~~~~~~~~~~-~~~~~~~--v~~i~~~p~~~~las~s~dg~--v~iwd~  220 (233)
                      . ++.+ +....+  +  .+..++..+...... +..+...  +..+++. .+.++++...|+.  |.++|+
T Consensus       329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            3 5544 444433  3  555556543222223 3344443  3445554 2344566777776  455554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.38  E-value=0.00037  Score=54.75  Aligned_cols=207  Identities=9%  Similarity=-0.005  Sum_probs=119.8

Q ss_pred             CCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (233)
Q Consensus         8 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~   87 (233)
                      |++....-|.-+....+|.+..++..++++-  ...|+..++...   .. ..... .......++|++.++.++.+-..
T Consensus        21 ~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~--~~~I~~i~~~g~---~~-~~~~~-~~~~~~~l~~d~~~~~ly~~D~~   93 (349)
T 3v64_C           21 FQCWCEAGYELRPDRRSCKALGPEPVLLFAN--RIDIRQVLPHRS---EY-TLLLN-NLENAIALDFHHRRELVFWSDVT   93 (349)
T ss_dssp             CCEECCTTEEECTTSSCEEESSSCCEEEEEC--BSCEEEECTTSC---CE-EEEEC-SCSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEECCCCccCCCCCCcccccccCceeEeec--ccceEEEeCCCC---ee-EEeec-CCCceEEEEEeccccEEEEEecc
Confidence            3333333343344556677766644344432  345666665421   11 11222 23457889999876666666667


Q ss_pred             CCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEE
Q 026765           88 DKTVRLWDARSGKCSQQAELS-GENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMF  164 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  164 (233)
                      .+.|..+++..+......... ..+..+++.+.+.. .++-...+.|.+.++........... ......++++|.+..+
T Consensus        94 ~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C           94 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeE
Confidence            789999998765432222111 23456888875544 45556677899999865432222211 2346788999866655


Q ss_pred             EEE-eCC-CeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEE-EEeeCCCcEEEEecCC
Q 026765          165 FLT-TGN-GTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDISE  222 (233)
Q Consensus       165 ~~~-~~~-~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~~  222 (233)
                      ... ..+ +.|..++.+... ...+ ...-...+.++++|++..| ++-+..+.|..+|++-
T Consensus       174 y~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            554 444 778888765322 1222 1223456899999876655 4445567899999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=6.2e-05  Score=60.96  Aligned_cols=152  Identities=19%  Similarity=0.246  Sum_probs=94.1

Q ss_pred             EEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC----cEEEEEcCC-Ce
Q 026765           69 VDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD----ELTILDVRK-FK  141 (233)
Q Consensus        69 v~~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~-~~  141 (233)
                      ...++++| +++.++ .+...+.|+.+|+..+..............+++++++++|+++.. ++    .+.+++... ..
T Consensus       139 P~~lavdp~~~g~Ly-v~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLY-LVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEE-EEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCEEEECCCCCCeEE-EEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            46788887 344444 444448899999987665444333345677999999996665554 22    233344321 11


Q ss_pred             eeeeeecCceeeEEEECC-CCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCE-EEEeeCCCcEEEE
Q 026765          142 PIHRRKFGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRY-FAVGSADSLVSLW  218 (233)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~-las~s~dg~v~iw  218 (233)
                      .............++++| ++.++++-..++.|..++........... ........++++|++++ +++-...+.|..+
T Consensus       218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          218 VITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             SEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence            111111223456788999 66666666778999999987654322111 12234678999999995 4555567889998


Q ss_pred             ecC
Q 026765          219 DIS  221 (233)
Q Consensus       219 d~~  221 (233)
                      +.+
T Consensus       298 ~~d  300 (430)
T 3tc9_A          298 DYD  300 (430)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.34  E-value=3e-05  Score=66.20  Aligned_cols=198  Identities=10%  Similarity=0.090  Sum_probs=109.8

Q ss_pred             EEEECc-CCCEEEEEeCCC-----------CEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeC-CCe
Q 026765           25 SVAWNC-TGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASG-DKT   90 (233)
Q Consensus        25 ~~~~~~-~~~~l~s~~~D~-----------~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~-d~~   90 (233)
                      .+++.+ +++.++.|+.+.           .+.+||+....-....  ... .+......+++.++ +++++.|+. +..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~-g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGN-GQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTT-SCEEEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--ccCCCCCCccccccCCCC-CCEEEeCCCCCCc
Confidence            445666 788888888653           4778887653322222  222 23333444566655 467778874 458


Q ss_pred             EEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEc-CC-----CcEEEEEcCCCeeeeee-----ecCceeeEEEE
Q 026765           91 VRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGN-RD-----DELTILDVRKFKPIHRR-----KFGYEVNEIAW  157 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~  157 (233)
                      +.+||..+.+..........  ...++..++++.++.|+ .+     ..+.+||+.+.+.....     ..........+
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            99999988765443222221  12456677999988888 34     46899998775533210     11000001122


Q ss_pred             CCCCCEEEEEeCCC---------eEEEEecCCceeeeEEeeecC---------ceeEEEEC-CCCCEEEEeeCCC-----
Q 026765          158 NMTGEMFFLTTGNG---------TVEVLTYPSLRPLDTVVAHTA---------GCYCIAID-PMGRYFAVGSADS-----  213 (233)
Q Consensus       158 ~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~---------~v~~i~~~-p~~~~las~s~dg-----  213 (233)
                      ..+++.++.++.+|         .+..||..+..-......+..         .-.++.+. .++++++.|+.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            34556666665443         456777655432222111111         12344443 3678888888543     


Q ss_pred             ------cEEEEecCCcEE
Q 026765          214 ------LVSLWDISEMLC  225 (233)
Q Consensus       214 ------~v~iwd~~~~~~  225 (233)
                            .|.+||..+..-
T Consensus       427 ~~~~~~~v~~yd~~~~~W  444 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPN  444 (656)
T ss_dssp             CCCCEEEEECCSTTSCCE
T ss_pred             cCCcceEEEcCCCCCCCe
Confidence                  678888876543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.31  E-value=0.00026  Score=54.77  Aligned_cols=159  Identities=11%  Similarity=0.192  Sum_probs=106.1

Q ss_pred             EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC---------CeeEEEE---CCCCCeEEEEc--
Q 026765           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITY---KPDGTHIAVGN--  127 (233)
Q Consensus        62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~l~~~~--  127 (233)
                      ++.....--++.|++..+.++++.-..++|..||...+..... ...+         ....+.+   .|+++.+++..  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3333333446789887677777777899999999875543332 2222         1346889   68876666543  


Q ss_pred             -----------CCCcEEEEEcC---CCeeeeeeecC--------------ceeeEEEECCCCCEEEEEeCC-CeEEEEec
Q 026765          128 -----------RDDELTILDVR---KFKPIHRRKFG--------------YEVNEIAWNMTGEMFFLTTGN-GTVEVLTY  178 (233)
Q Consensus       128 -----------~d~~i~i~d~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  178 (233)
                                 .+..+..||+.   +.+.+......              ...+.++..++|+..++.+.. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       15678999998   66655433321              247889999999999988877 87777765


Q ss_pred             CCceeeeEEe-e-----ecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          179 PSLRPLDTVV-A-----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       179 ~~~~~~~~~~-~-----~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +. +....+. .     ..-..+.|+++|+|+.|++...+|.+..+|+++
T Consensus       167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            43 2222211 1     112356899999999888776699999999874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.29  E-value=0.0015  Score=56.84  Aligned_cols=209  Identities=11%  Similarity=0.014  Sum_probs=122.3

Q ss_pred             ccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           19 HKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      ....+.+|+|++.+..| ++-...+.|+.++++...........+.........|++++.+++++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34557789998865555 45455677877777532110011122332334566788887776777777788899999997


Q ss_pred             CCeeeeeeee-cCCeeEEEECCCCCeEEEEc-CC-CcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEE-eCCCe
Q 026765           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGN-RD-DELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT-TGNGT  172 (233)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~d-~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~  172 (233)
                      .......... -..+..++++|...+|.... .. +.|...++............ ...+.+++++..+.|+.+ ...+.
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            6543222221 13466799998765655443 23 67888888654433222222 357788998776666655 45678


Q ss_pred             EEEEecCCceeeeEEe-e--ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          173 VEVLTYPSLRPLDTVV-A--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~-~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      |..+++.... ...+. .  .-.....|++.. ++++++-...+.|...|..++..+.++
T Consensus       582 I~~~d~dG~~-~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          582 ISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCc-eEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            8888875322 22222 1  122345677643 345555556788888887666544443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.28  E-value=0.00021  Score=59.97  Aligned_cols=140  Identities=11%  Similarity=0.058  Sum_probs=91.2

Q ss_pred             eEEEEECCCCeeeeeeeecC----------CeeEEEECCCCC---eEEEEcCCCcEEEEEcCCCeeeeeeecCc------
Q 026765           90 TVRLWDARSGKCSQQAELSG----------ENINITYKPDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGY------  150 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------  150 (233)
                      .|..+|.++++..-......          ...-+...++|+   .++.+..++.+.++|..+++.+...+...      
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            58899999998765544321          111122224664   56678889999999998887765544321      


Q ss_pred             --------ee--------------------------eEEEECCCCCEEEEEe----------------------------
Q 026765          151 --------EV--------------------------NEIAWNMTGEMFFLTT----------------------------  168 (233)
Q Consensus       151 --------~~--------------------------~~~~~~~~~~~~~~~~----------------------------  168 (233)
                              ++                          ..++++|+...+++..                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                    11                          2356677766666553                            


Q ss_pred             ---------CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 ---------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 ---------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                               .+|.+..+|..+++..-++.. ...+....+...+..+..++.||.|+.||.++++.+-+|.
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence                     347888899888877655542 2223322223345677779999999999999999988775

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.23  E-value=0.00098  Score=52.04  Aligned_cols=193  Identities=13%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcC----CCCC--EEEEEeC---CCeEEEEECC--CC
Q 026765           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP----KHAD--LIATASG---DKTVRLWDAR--SG   99 (233)
Q Consensus        31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~--~l~sg~~---d~~i~iwd~~--~~   99 (233)
                      ...+++....++-+.|||+..    +... .+..  ..++.+..-|    .+..  ++++...   +.+|.+|++.  ++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G----~~l~-~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG----KMLH-SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS----CEEE-EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             CccEEEEEcCCCCEEEEcCCC----cEEE-EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            445666667778899999842    2111 2322  3344444433    1111  3333333   5789999773  33


Q ss_pred             eeeeee----e--ec-CCeeEEEE--CCC-CC-eEEEEcCCCcEEEEEcC-------CCeeeeeeecCceeeEEEECCCC
Q 026765          100 KCSQQA----E--LS-GENINITY--KPD-GT-HIAVGNRDDELTILDVR-------KFKPIHRRKFGYEVNEIAWNMTG  161 (233)
Q Consensus       100 ~~~~~~----~--~~-~~~~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~  161 (233)
                      ......    .  .. ..+..+++  +|. +. ++++...++.+..|++.       +.+.+.....+.++..+...+..
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~  191 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY  191 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC
Confidence            322110    1  11 33445666  774 43 67888889999999883       23455666667788899999888


Q ss_pred             CEEEEEeCCCeEEEEecC-----CceeeeEEe-eec-CceeEEEE--CCCCC-EEEEee-CCCcEEEEecC-CcEEEEee
Q 026765          162 EMFFLTTGNGTVEVLTYP-----SLRPLDTVV-AHT-AGCYCIAI--DPMGR-YFAVGS-ADSLVSLWDIS-EMLCVRTF  229 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~-----~~~~~~~~~-~~~-~~v~~i~~--~p~~~-~las~s-~dg~v~iwd~~-~~~~i~~~  229 (233)
                      ..++++-++.-|..++.+     +.+.+..+. ++- ..+..+++  .++++ +|++.+ .+....|||.+ +.+.+.+|
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            999999998777777754     233443321 121 35666776  56666 666666 56799999997 67778777


Q ss_pred             e
Q 026765          230 T  230 (233)
Q Consensus       230 ~  230 (233)
                      .
T Consensus       272 ~  272 (355)
T 3amr_A          272 R  272 (355)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.23  E-value=0.00032  Score=60.04  Aligned_cols=158  Identities=15%  Similarity=0.200  Sum_probs=102.9

Q ss_pred             EEEEcCCCCCEEEEEeCCC-------------------eEEEEECCCCeeeeeeeec----------CCeeEEEECCCCC
Q 026765           71 QLCWDPKHADLIATASGDK-------------------TVRLWDARSGKCSQQAELS----------GENINITYKPDGT  121 (233)
Q Consensus        71 ~~~~~~~~~~~l~sg~~d~-------------------~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~  121 (233)
                      .++++|.. .+++.+..++                   .|..+|..+++..-.....          .+.....+..+++
T Consensus       234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            35677754 4666777665                   3899999999876655432          1112222223554


Q ss_pred             ---eEEEEcCCCcEEEEEcCCCeeeeeeecCc-------------e------------------------eeEEEECCCC
Q 026765          122 ---HIAVGNRDDELTILDVRKFKPIHRRKFGY-------------E------------------------VNEIAWNMTG  161 (233)
Q Consensus       122 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~------------------------~~~~~~~~~~  161 (233)
                         .++.+..++.+.++|.++++.+...+...             +                        ...++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               57888899999999998887763322111             0                        1125566665


Q ss_pred             CEEEEEe------------------------------------CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCE
Q 026765          162 EMFFLTT------------------------------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY  205 (233)
Q Consensus       162 ~~~~~~~------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  205 (233)
                      ..+.+..                                    .+|.+..||..+++..-+...+ .......+...+.+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~  471 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNL  471 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTE
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCE
Confidence            6555421                                    2378999999988876655432 23333334446778


Q ss_pred             EEEeeCCCcEEEEecCCcEEEEeee
Q 026765          206 FAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       206 las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++.|+.|+.++.||.++++.+.+|.
T Consensus       472 vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          472 VFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCcccchhhhhhcChhheEec
Confidence            8889999999999999999988774

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.20  E-value=0.0011  Score=52.74  Aligned_cols=193  Identities=9%  Similarity=-0.001  Sum_probs=112.2

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      .-+|.+..++ .+|+-+ ....|+..++....   .. ... ........++|++.++.++++-...+.|..+++..+..
T Consensus        78 ~~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~---~~-~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFA-NRIDIRQVLPHRSE---YT-LLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  150 (386)
T ss_dssp             SSCEEECSSC-CEEEEE-CBSCEEEECTTSCC---CE-EEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred             CCeECCcccc-ceeEee-cCccceeeccCCCc---EE-EEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence            3345554443 333333 23567777664321   11 112 23345788999987666766766778999999876643


Q ss_pred             eeeeeec-CCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEEe-CC-CeEEEE
Q 026765          102 SQQAELS-GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTT-GN-GTVEVL  176 (233)
Q Consensus       102 ~~~~~~~-~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~v~~~  176 (233)
                      ....... ..+..+++++.+..| ++-...+.|.+.++............ .....++++|.+..+.... .+ +.|..+
T Consensus       151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence            2222211 234567888755444 55556678888887643322222212 3467888998776665554 44 678887


Q ss_pred             ecCCceeeeEEe-eecCceeEEEECCCCCEE-EEeeCCCcEEEEecCC
Q 026765          177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDISE  222 (233)
Q Consensus       177 ~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~~  222 (233)
                      +.+... ...+. ..-...+.|+++|++..| ++-+..+.|..+|++.
T Consensus       231 ~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          231 SMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             ETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             eCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            765322 22222 223456899999866655 4445567899998863

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.17  E-value=8.2e-05  Score=64.57  Aligned_cols=154  Identities=11%  Similarity=0.079  Sum_probs=88.8

Q ss_pred             cEEEEEEc-CCCCCEEEEEeCCC----eEEEEECCCC-eeeeeeeecCCeeEEEECCCCCeEEEEcCC-----CcEEEEE
Q 026765           68 SVDQLCWD-PKHADLIATASGDK----TVRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILD  136 (233)
Q Consensus        68 ~v~~~~~~-~~~~~~l~sg~~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d  136 (233)
                      .+...+|+ |++..++++...+|    +|.++|+.++ +.... ........+.|+||++.|+....+     ..|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57788999 98765555554433    5999999887 52211 111112357899999988876654     2477777


Q ss_pred             cCCCee----eeeeecCceeeEEEECCCCCEEEEEeC---CCeEEEEecCCce-ee--eEEe-eecCceeEEEECCCCCE
Q 026765          137 VRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLR-PL--DTVV-AHTAGCYCIAIDPMGRY  205 (233)
Q Consensus       137 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~-~~--~~~~-~~~~~v~~i~~~p~~~~  205 (233)
                      +.+.+.    +.......-...+.|+++|++++....   ...+.+++..+.. ..  ..+. ......+++.|+..+.+
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            765431    111111122456789999999887653   4467777776541 12  2232 23344556665443334


Q ss_pred             EEEeeCC--C--cEEEEecCC
Q 026765          206 FAVGSAD--S--LVSLWDISE  222 (233)
Q Consensus       206 las~s~d--g--~v~iwd~~~  222 (233)
                      ++....+  +  .|..+|+..
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTS
T ss_pred             EEEeCCCCCCCcEEEEEcCCC
Confidence            4444443  2  566666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.16  E-value=0.0018  Score=52.50  Aligned_cols=197  Identities=16%  Similarity=0.198  Sum_probs=113.4

Q ss_pred             ccccEEEEEECcCCCEEEEEeCC---CC-EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVD---QT-ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D---~~-v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .......++|+++|+++++....   .. +...+... .....  ..+. .-.....++++|.++.++++-..++.|..+
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-~~~~~--~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~  255 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-GFTER--LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSY  255 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG-TTCCE--EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC-Ceecc--cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence            34457899999999955554321   12 22222211 11110  1111 223345678888556776666677899999


Q ss_pred             ECCCCeeee-eeeec--CCeeEEEECCCCCeEE-EEcCCCcEEEEEcCC--Cee-----eeee--ec-----------Cc
Q 026765           95 DARSGKCSQ-QAELS--GENINITYKPDGTHIA-VGNRDDELTILDVRK--FKP-----IHRR--KF-----------GY  150 (233)
Q Consensus        95 d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~--~~~-----~~~~--~~-----------~~  150 (233)
                      |..++.... .....  .....++++|++++|. +-...+.|..++...  ...     +...  ..           -.
T Consensus       256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~  335 (433)
T 4hw6_A          256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW  335 (433)
T ss_dssp             CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred             ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence            988665422 22221  2234599999999555 445567888877542  111     0000  00           01


Q ss_pred             eeeEEEE---------CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec------------------CceeEEEEC-CC
Q 026765          151 EVNEIAW---------NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT------------------AGCYCIAID-PM  202 (233)
Q Consensus       151 ~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~v~~i~~~-p~  202 (233)
                      ....+++         ..+++++++-..++.|+.++. ++. +.++.+..                  .....|+++ ++
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~  413 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR  413 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence            2456888         777877777778889998884 442 33333221                  235689999 56


Q ss_pred             CCEEEEeeCCCcEEEEecC
Q 026765          203 GRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       203 ~~~las~s~dg~v~iwd~~  221 (233)
                      +.++++=..++.|+.++++
T Consensus       414 g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          414 KCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEecC
Confidence            6666666667778887765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.15  E-value=3.5e-05  Score=66.25  Aligned_cols=207  Identities=10%  Similarity=-0.003  Sum_probs=118.3

Q ss_pred             cEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe
Q 026765           22 KVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~  100 (233)
                      .+..++|++.+..|.-+. ..+.|+.+++............+.........+++.+.+++++++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456788888776665554 5678888887531000000001111112344577776566666666667889999987654


Q ss_pred             eeeeeee-cCCeeEEEECCCCCeEEEEcC-C-CcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEE-eCCCeEEE
Q 026765          101 CSQQAEL-SGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTVEV  175 (233)
Q Consensus       101 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~  175 (233)
                      ....... ...+..++++|.+.+|+.... . +.|..+++........... ....+.++++++++.++.+ ...+.|..
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            3322221 123456888886655554432 2 6777777653222111111 1246789999876655554 56788999


Q ss_pred             EecCCceeeeEEee---ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          176 LTYPSLRPLDTVVA---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       176 ~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +++.... ...+..   .......|++..+ .++++....+.|..+|..+++.++++.
T Consensus       567 ~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          567 IDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            9875322 122221   1123445666554 556666777899999998888777663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.14  E-value=0.00019  Score=61.43  Aligned_cols=185  Identities=13%  Similarity=0.119  Sum_probs=112.4

Q ss_pred             EEEEECcCCCEEEEEeCCCC-------------------EEEEecccCCCCceeeEEEecCc-------CcEEEEEEcCC
Q 026765           24 HSVAWNCTGTKLASGSVDQT-------------------ARVWHIEPHGHGKVKDIELRGHA-------DSVDQLCWDPK   77 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~~-------------------v~vW~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~   77 (233)
                      ..++++|+...++.+..++.                   |..+|+.+..  .....+...|.       .+.....+..+
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~~  310 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNID  310 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc--eeeEeecCCCccccccCCCCcEEEEeccC
Confidence            35688888888888876653                   7777765432  22222222232       22222222223


Q ss_pred             CC--CEEEEEeCCCeEEEEECCCCeeeeeeeecC------------C-------------------------eeEEEECC
Q 026765           78 HA--DLIATASGDKTVRLWDARSGKCSQQAELSG------------E-------------------------NINITYKP  118 (233)
Q Consensus        78 ~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~------------~-------------------------~~~~~~~~  118 (233)
                      +.  ..++.++.+|.+.++|..+++.........            .                         -..++++|
T Consensus       311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp  390 (668)
T 1kv9_A          311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP  390 (668)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence            32  257889999999999999998653222111            0                         00156677


Q ss_pred             CCCeEEEE------------------------------------cCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCC
Q 026765          119 DGTHIAVG------------------------------------NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (233)
Q Consensus       119 ~~~~l~~~------------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (233)
                      +...+.+.                                    ..++.+..||+.+.+.+...+...+.....+...+.
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg  470 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN  470 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCC
Confidence            65555431                                    123779999999998877766554444434445678


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCce-eEEEECCCCC-EEEEee
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC-YCIAIDPMGR-YFAVGS  210 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-~~i~~~p~~~-~las~s  210 (233)
                      .++.++.++.++.+|.++++.+..+....... .-+.+..+|+ +++.++
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            88899999999999999999887776432211 2234445665 455444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.11  E-value=0.0033  Score=53.42  Aligned_cols=201  Identities=6%  Similarity=0.001  Sum_probs=123.8

Q ss_pred             ccEEEEEECcCCCEEE-EEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~-s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      .....|+|++.+..|. +-..++.|..++++...   ... .+..-......+++++.++++.++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---~~~-v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA---LEH-VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEE-EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---cEE-EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            4577999998766665 44457888777765321   111 122222345678887766677777677789999998654


Q ss_pred             eeeeee-eecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE-eCCCeEEE
Q 026765          100 KCSQQA-ELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEV  175 (233)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  175 (233)
                      ...... ..-..+..++++|....|....  ..+.|...++...............+.++++++++.+..+ ...+.|..
T Consensus       113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            322211 1123457799998655555443  2467777777654332222223457789999876666655 55788999


Q ss_pred             EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      +++..... ..+.........+++.. +..+.+-...+.|...|..++....
T Consensus       193 ~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          193 SNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             EETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence            98764322 23333444567888865 4555666667889999977665433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.0024  Score=51.69  Aligned_cols=198  Identities=13%  Similarity=0.130  Sum_probs=112.5

Q ss_pred             ccccEEEEEECcCCCEEEEEeC-CCC---EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           19 HKKKVHSVAWNCTGTKLASGSV-DQT---ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~-D~~---v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .......++|+++++.|..+.. ++.   ..+|-..........  .+. .......++++|+++.++++-..++.|..+
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~--~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~  253 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVIT--ELT-KGQNCNGAETHPINGELYFNSWNAGQVFRY  253 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEE--EEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeee--eec-cCCCceEEEEeCCCCEEEEEECCCCEEEEE
Confidence            3455778999999996655544 222   222222211111111  121 123456678899656777776678899999


Q ss_pred             ECCCCeeeeeeeec--CCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCC--ee-----eeee--------------ecCc
Q 026765           95 DARSGKCSQQAELS--GENINITYKPDGTHIA-VGNRDDELTILDVRKF--KP-----IHRR--------------KFGY  150 (233)
Q Consensus        95 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~--~~-----~~~~--------------~~~~  150 (233)
                      |...+.........  .....++++|++++|. +-...+.|..++....  ..     +...              .+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~  333 (430)
T 3tc9_A          254 DFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHA  333 (430)
T ss_dssp             ETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSS
T ss_pred             ECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCC
Confidence            99876543322222  2356799999999554 4456678888775431  11     1000              0111


Q ss_pred             eeeEEEEC--------CCCCEEEEEeCCCeEEEEecCCceeeeEEeee------------------cCceeEEEECCC-C
Q 026765          151 EVNEIAWN--------MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH------------------TAGCYCIAIDPM-G  203 (233)
Q Consensus       151 ~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~~~v~~i~~~p~-~  203 (233)
                      +...+...        .+++++++-..++.|+.++. +++ +..+.+.                  -.....|+++|+ +
T Consensus       334 P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g  411 (430)
T 3tc9_A          334 PRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE  411 (430)
T ss_dssp             EEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred             CcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC
Confidence            11134442        34666666667788888873 443 2333322                  114678999995 5


Q ss_pred             CEEEEeeCCCcEEEEecC
Q 026765          204 RYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       204 ~~las~s~dg~v~iwd~~  221 (233)
                      .++++-..+..|+.++++
T Consensus       412 ~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          412 CFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEccC
Confidence            555665566778887765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=0.0027  Score=52.08  Aligned_cols=206  Identities=11%  Similarity=0.052  Sum_probs=119.2

Q ss_pred             ccEEEEEE-------CcCCCEEEEEeCCC-C------EEEEecccCCCCc--eeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765           21 KKVHSVAW-------NCTGTKLASGSVDQ-T------ARVWHIEPHGHGK--VKDIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        21 ~~V~~~~~-------~~~~~~l~s~~~D~-~------v~vW~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      .....++|       +++++.|+.+...+ .      |.+.+......-.  .....+... .....++.+|+++.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            35889999       99999666665543 2      4444322201110  000111111 233467889977788888


Q ss_pred             EeCCCeEEEEECC-------CCee-----------e-eeeeec--CCeeEEEECCCCCeEE-EEcCCCcEEEEEcC--CC
Q 026765           85 ASGDKTVRLWDAR-------SGKC-----------S-QQAELS--GENINITYKPDGTHIA-VGNRDDELTILDVR--KF  140 (233)
Q Consensus        85 g~~d~~i~iwd~~-------~~~~-----------~-~~~~~~--~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~  140 (233)
                      -..++.|..+|+.       ++..           . ......  .....++++|++++|. +-.....|+.++..  ..
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            8888899999987       4443           0 112222  3356799999999644 44566788886543  22


Q ss_pred             ee-----eeee--------------ecCceeeEEEEC-------CCCCEEEEEeCCCeEEEEecCCceeeeEEeeec---
Q 026765          141 KP-----IHRR--------------KFGYEVNEIAWN-------MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT---  191 (233)
Q Consensus       141 ~~-----~~~~--------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---  191 (233)
                      ..     +...              ++..+...+...       .+++++++-..+..|+.++ .++ .+.++.+..   
T Consensus       345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~  422 (496)
T 3kya_A          345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGAST  422 (496)
T ss_dssp             EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTH
T ss_pred             eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccc
Confidence            11     1000              111122244444       5667777777888999988 344 344554421   


Q ss_pred             ---------------------CceeEEEECCC-CCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765          192 ---------------------AGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       192 ---------------------~~v~~i~~~p~-~~~las~s~dg~v~iwd~~~~~~i~~~  229 (233)
                                           .....|+++++ +.++++=+.+..|+.++++...++...
T Consensus       423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~  482 (496)
T 3kya_A          423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGD  482 (496)
T ss_dssp             HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-----
T ss_pred             cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccC
Confidence                                 23568999997 666666667789999999877666543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.07  E-value=0.0028  Score=51.35  Aligned_cols=200  Identities=11%  Similarity=0.067  Sum_probs=114.1

Q ss_pred             cEEEEEECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC---Ce-EEEEE
Q 026765           22 KVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KT-VRLWD   95 (233)
Q Consensus        22 ~V~~~~~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d---~~-i~iwd   95 (233)
                      .-..|+|+|+  +..|..+...+.|+.+++..   ..+.  .+.........+++++++. ++++-...   .. +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~---g~v~--~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN---QYVD--IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTT---TEEE--EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCC---CEEE--EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence            3568899985  44455554448888888643   1221  2333445688999999875 65554321   12 22233


Q ss_pred             CCCCee-eeeeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeee-eecC--ceeeEEEECCCCCEEE-EEeC
Q 026765           96 ARSGKC-SQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHR-RKFG--YEVNEIAWNMTGEMFF-LTTG  169 (233)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~-~~~~  169 (233)
                      ...+.. ......-.....++++| ++...++-..++.|..+|..+...... ....  .....++++++++.+. +-..
T Consensus       214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence            221111 01111123345588899 666665666678899999875443111 1111  1123699999999554 4456


Q ss_pred             CCeEEEEecCC--cee--eeEEeee---------------cCceeEEEE---------CCCCCEEEEeeCCCcEEEEecC
Q 026765          170 NGTVEVLTYPS--LRP--LDTVVAH---------------TAGCYCIAI---------DPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       170 ~~~v~~~~~~~--~~~--~~~~~~~---------------~~~v~~i~~---------~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ++.|..+++..  .+.  ...+.+.               -.....+++         .+++.++++-...+.|+.++. 
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-  372 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-  372 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-
Confidence            78899987642  211  1122221               123567898         777877777777888999985 


Q ss_pred             CcEEEEee
Q 026765          222 EMLCVRTF  229 (233)
Q Consensus       222 ~~~~i~~~  229 (233)
                      ++ .+.++
T Consensus       373 ~G-~v~t~  379 (433)
T 4hw6_A          373 EG-RVTTY  379 (433)
T ss_dssp             TS-EEEEE
T ss_pred             CC-CEEEE
Confidence            45 34443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.06  E-value=0.00093  Score=56.12  Aligned_cols=151  Identities=9%  Similarity=0.030  Sum_probs=87.2

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC--cEE-EEEEcCCCCCEEEEEeC------CCeEEEEECCCCeee
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVD-QLCWDPKHADLIATASG------DKTVRLWDARSGKCS  102 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~--~v~-~~~~~~~~~~~l~sg~~------d~~i~iwd~~~~~~~  102 (233)
                      +..++.++.|+.+..+|..+..  ......+..+..  .+. ....  .+. .++.++.      ++.|..+|..+++..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGK--INWEVEVCDPKVGSTLTQAPFV--AKD-TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC--EEEEEECCCGGGTCBCCSCCEE--ETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCC--EEEEecCCCCCccceeccCCEE--ECC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            5567777788888888875432  222222222110  111 0011  123 3444544      789999999999876


Q ss_pred             eeeeecCCe---------------------------------------eEEEECCCCCeEEEEcCC--------------
Q 026765          103 QQAELSGEN---------------------------------------INITYKPDGTHIAVGNRD--------------  129 (233)
Q Consensus       103 ~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d--------------  129 (233)
                      -........                                       ..+++.++...+..+..+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            544432111                                       124566666666666532              


Q ss_pred             --CcEEEEEcCCCeeeeeeecCc----------eeeEEEECCCCC---EEEEEeCCCeEEEEecCCceeeeEE
Q 026765          130 --DELTILDVRKFKPIHRRKFGY----------EVNEIAWNMTGE---MFFLTTGNGTVEVLTYPSLRPLDTV  187 (233)
Q Consensus       130 --~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~  187 (233)
                        +.+..+|.++++.+...+...          ...-+....+|+   .++.++.+|.+.++|..+++.+-.+
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence              258899998888776654321          111112224664   5677888999999999888776554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.05  E-value=0.0017  Score=54.71  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=89.2

Q ss_pred             CeEEEEECCCCeeeeeeeecCC----------eeEEEEC-CCCC---eEEEEcCCCcEEEEEcCCCeeeeeeecCce---
Q 026765           89 KTVRLWDARSGKCSQQAELSGE----------NINITYK-PDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYE---  151 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---  151 (233)
                      +.|..+|..+++..-.......          ..-+... .+|+   .++.++.++.+.++|.++++.+........   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            5899999999987665543211          1112221 4664   677889999999999988777654433210   


Q ss_pred             -------------------------------------------eeEEEECCCCCEEEEEe--------------------
Q 026765          152 -------------------------------------------VNEIAWNMTGEMFFLTT--------------------  168 (233)
Q Consensus       152 -------------------------------------------~~~~~~~~~~~~~~~~~--------------------  168 (233)
                                                                 ...++++|+...+++..                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                                                       01234555555544432                    


Q ss_pred             -------------CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 -------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 -------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                                   ..|.+..||..+++..-+.... .++..-.....+..+..|+.||.++.||.++++.+-+|+
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence                         2578888998888776554422 222211111235677789999999999999999988775

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.05  E-value=0.0023  Score=49.50  Aligned_cols=192  Identities=9%  Similarity=0.071  Sum_probs=115.3

Q ss_pred             EEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecC------cCcEEEEEE---cCCCCCEEEEEe-------
Q 026765           24 HSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGH------ADSVDQLCW---DPKHADLIATAS-------   86 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h------~~~v~~~~~---~~~~~~~l~sg~-------   86 (233)
                      -+++|++....|..++ ..++|..|+....   ......+++-      ...+..+.|   .|. +.++++..       
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~   91 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNF   91 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCT
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccc
Confidence            3678887665555555 7999999987532   2222223321      114578999   676 45665433       


Q ss_pred             ------CCCeEEEEECC---CCeeeeeeeec----C----------CeeEEEECCCCCeEEEEcCC-CcEEEEEcCCCee
Q 026765           87 ------GDKTVRLWDAR---SGKCSQQAELS----G----------ENINITYKPDGTHIAVGNRD-DELTILDVRKFKP  142 (233)
Q Consensus        87 ------~d~~i~iwd~~---~~~~~~~~~~~----~----------~~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~  142 (233)
                            .+..|..||+.   +++......+.    +          ....++..++|+..++++.. +.|..++......
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence                  26789999998   67655444432    1          24568999999988888877 7776666543221


Q ss_pred             eee-eec-----CceeeEEEECCCCCEEEEEeCCCeEEEEecCCcee--eeEEe--ee---cCceeE-EEECCCCCE-EE
Q 026765          143 IHR-RKF-----GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP--LDTVV--AH---TAGCYC-IAIDPMGRY-FA  207 (233)
Q Consensus       143 ~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~--~~---~~~v~~-i~~~p~~~~-la  207 (233)
                      ..- ...     ....+.++++|+++.+++....+.+..+|......  +. ..  +.   ...... +..-.+|+. |+
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV  250 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLV  250 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEE
Confidence            111 111     12367899999999999997799999999764322  11 11  11   112223 233346666 45


Q ss_pred             EeeCCCcEEEEec
Q 026765          208 VGSADSLVSLWDI  220 (233)
Q Consensus       208 s~s~dg~v~iwd~  220 (233)
                      +.+..+.+.+.+.
T Consensus       251 ~~~~~~~~~l~S~  263 (334)
T 2p9w_A          251 GARAPYAISFRSW  263 (334)
T ss_dssp             EEETTEEEEEECS
T ss_pred             EcCCCCEEEEECC
Confidence            5555555555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.03  E-value=0.0024  Score=48.97  Aligned_cols=186  Identities=16%  Similarity=0.102  Sum_probs=102.9

Q ss_pred             ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeE-EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      +....++++++|+++++......++|+.+.... +.+..+ .+ ........++..+ +..++++-..++.|.++|...+
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCC
Confidence            457889999999976665443343444332211 222211 11 1122234444443 3344555556888888897654


Q ss_pred             eeeee-e-------ee-cC--CeeEEEECCCCCeEEE-EcCCCcEEEEEcCC-Cee--eeeeecCceeeEEEECCCCCEE
Q 026765          100 KCSQQ-A-------EL-SG--ENINITYKPDGTHIAV-GNRDDELTILDVRK-FKP--IHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus       100 ~~~~~-~-------~~-~~--~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                      +.... .       .. ..  ....+  +|++.++.+ -...+.|..+++.. .+.  ............++++++|+++
T Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~  226 (306)
T 2p4o_A          149 SGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY  226 (306)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred             cEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEE
Confidence            21110 0       00 11  12234  778876654 45567899999864 221  1111111245678899999887


Q ss_pred             EEEeCCCeEEEEecCCceeee--EEeeecCceeEEEEC---CCCCEEEEeeCC
Q 026765          165 FLTTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAID---PMGRYFAVGSAD  212 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~i~~~---p~~~~las~s~d  212 (233)
                      ++...++.|.+++.. ++...  .+......+.+++|.   |+++.|..++..
T Consensus       227 va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          227 GATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            777778899999864 44321  222223567899998   887766655543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.03  E-value=0.00019  Score=61.23  Aligned_cols=199  Identities=8%  Similarity=0.053  Sum_probs=105.5

Q ss_pred             cEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe-CC-----CeEEEE
Q 026765           22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GD-----KTVRLW   94 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~-~d-----~~i~iw   94 (233)
                      ...++++.+++++++.|+. +..+.+||.....  ......++. ...-..++..++ +++++.|+ .+     ..+.+|
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~~~~~-~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQV-ARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSS-CCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEE
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCc--eeECCCCCc-cccccceEEecC-CeEEEEeCcccCCcccccceEe
Confidence            3445677789999999984 5689999986421  111111111 111223444444 46777887 44     568999


Q ss_pred             ECCCCeeeeee-----eecCCeeEEEECCCCCeEEEEcCCC---------cEEEEEcCCCeeeeeeecCc----------
Q 026765           95 DARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDD---------ELTILDVRKFKPIHRRKFGY----------  150 (233)
Q Consensus        95 d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~---------~i~i~d~~~~~~~~~~~~~~----------  150 (233)
                      |..+.+....-     ..........+..+++.++.|+.++         .+..||..+...........          
T Consensus       320 d~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          320 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence            99887654320     0000000011224455555555443         46778876654332111110          


Q ss_pred             eeeEEEEC-CCCCEEEEEeCCC-----------eEEEEecCCceeeeEE--eeecCce-eEEEECCCCCEEEEeeCC---
Q 026765          151 EVNEIAWN-MTGEMFFLTTGNG-----------TVEVLTYPSLRPLDTV--VAHTAGC-YCIAIDPMGRYFAVGSAD---  212 (233)
Q Consensus       151 ~~~~~~~~-~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~--~~~~~~v-~~i~~~p~~~~las~s~d---  212 (233)
                      .-..+.+. .+++.++.|+.++           .+.+||..+.+-....  .-..... .+....|++++++.|+.+   
T Consensus       400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            11223332 4677777776432           5666665543221111  1112222 244567899999999865   


Q ss_pred             --------CcEEEEecCCcE
Q 026765          213 --------SLVSLWDISEML  224 (233)
Q Consensus       213 --------g~v~iwd~~~~~  224 (233)
                              ..+.+||..+.+
T Consensus       480 ~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          480 PFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             TTCCCSBCCCCEEEEGGGTE
T ss_pred             CcCCCCcccceEEEcCCCCc
Confidence                    468999987764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.01  E-value=0.00063  Score=57.28  Aligned_cols=82  Identities=18%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCce-eEEEECCCCC-EE
Q 026765          129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC-YCIAIDPMGR-YF  206 (233)
Q Consensus       129 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-~~i~~~p~~~-~l  206 (233)
                      ++.+..||+.+.+.+.+.....+...-.....+..++.++.|+.++.+|.++++.+-++....... .-+.+..+|+ |+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            467888999888877666544333221122246778889999999999999999887776433211 2266667776 45


Q ss_pred             EEee
Q 026765          207 AVGS  210 (233)
Q Consensus       207 as~s  210 (233)
                      ++.+
T Consensus       545 ~~~~  548 (582)
T 1flg_A          545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            5443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.97  E-value=0.0028  Score=53.54  Aligned_cols=141  Identities=15%  Similarity=0.126  Sum_probs=87.0

Q ss_pred             CeEEEEECCCCeeeeeeeecCC----------eeEEEEC-CCC---CeEEEEcCCCcEEEEEcCCCeeeeeeecCc----
Q 026765           89 KTVRLWDARSGKCSQQAELSGE----------NINITYK-PDG---THIAVGNRDDELTILDVRKFKPIHRRKFGY----  150 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----  150 (233)
                      ..|..+|..+++..-.......          ..-+... .+|   ..++.++.++.+.++|.++++.+.......    
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            3788999999987655543321          1112222 567   456778899999999998887765443211    


Q ss_pred             ----------e--------------------------eeEEEECCCCCEEEEEe--------------------------
Q 026765          151 ----------E--------------------------VNEIAWNMTGEMFFLTT--------------------------  168 (233)
Q Consensus       151 ----------~--------------------------~~~~~~~~~~~~~~~~~--------------------------  168 (233)
                                +                          ...++++|+.+++++..                          
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence                      0                          12345555555544321                          


Q ss_pred             -------------CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 -------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 -------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                                   ..|.+..||..+++..-+.. +..+...-.+.-.+..+..++.|+.++.||.++++.+-+|+
T Consensus       438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence                         34677888887776654432 12122211122245677779999999999999999988774

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.0065  Score=51.51  Aligned_cols=205  Identities=7%  Similarity=-0.044  Sum_probs=119.4

Q ss_pred             cccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           20 KKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      .+...+++|++.+..|.-+. ..+.|..++++...  . ....+..-......+++++.+++++++-...+.|.+.++..
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~-~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--S-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--c-eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence            34567899998777665554 46777777765321  1 11122222356788999887667777777788999999876


Q ss_pred             Ceeeeee-eecCCeeEEEECCCCCeEEEEcC--CCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE-eCCCeE
Q 026765           99 GKCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT-TGNGTV  173 (233)
Q Consensus        99 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~v  173 (233)
                      ....... ..-..+..++++|.+.+|.....  .+.|...++.......... .....+.++++++++.+..+ ...+.|
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            5332222 11234567899887555554442  3567666765432222111 12346788999876665555 557788


Q ss_pred             EEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      ..+++..........+.......+++..+ ..+.+-...+.|...|..+++.++.
T Consensus       196 ~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          196 HKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             EEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             EEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            88887643322222212233457778765 5556666778899999877754443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.95  E-value=0.0031  Score=53.26  Aligned_cols=195  Identities=14%  Similarity=0.056  Sum_probs=115.4

Q ss_pred             CCEEEEEeC-CCCEEEEec-ccCCCCceeeEEEecCc---------CcEEEEEEcCCCCC---EEEEEeCCCeEEEEECC
Q 026765           32 GTKLASGSV-DQTARVWHI-EPHGHGKVKDIELRGHA---------DSVDQLCWDPKHAD---LIATASGDKTVRLWDAR   97 (233)
Q Consensus        32 ~~~l~s~~~-D~~v~vW~~-~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~---~l~sg~~d~~i~iwd~~   97 (233)
                      +..+..++. ++.|.-+|. .+..  .+.........         .....+++.|.+..   .++.++.|+.+.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~--~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGT--ILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTS--EEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCc--EEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            456666676 788888877 4422  12222111110         00122344332222   26678889999999999


Q ss_pred             CCeeeeeeeecC-----CeeE-EEECCCCCeEEEEc------CCCcEEEEEcCCCeeeeeeecCcee-------------
Q 026765           98 SGKCSQQAELSG-----ENIN-ITYKPDGTHIAVGN------RDDELTILDVRKFKPIHRRKFGYEV-------------  152 (233)
Q Consensus        98 ~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~-------------  152 (233)
                      +++..-......     .... ..+. ++ .+++++      .++.|..+|.++++.+.......+.             
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            998765544322     1111 1111 33 455554      3789999999988877655432211             


Q ss_pred             --------------------------eEEEECCCCCEEEEEeCCC----------------eEEEEecCCceeeeEEeee
Q 026765          153 --------------------------NEIAWNMTGEMFFLTTGNG----------------TVEVLTYPSLRPLDTVVAH  190 (233)
Q Consensus       153 --------------------------~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~~~~~  190 (233)
                                                ...+..+....++.+..++                .+..+|.++++..-.+...
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                      1234456677788877663                7888899888876555432


Q ss_pred             cC---------ceeEEEEC-CCC---CEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          191 TA---------GCYCIAID-PMG---RYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       191 ~~---------~v~~i~~~-p~~---~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..         ...-+... .+|   +.++.++.+|.+.++|.++++.+-.+.
T Consensus       298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            11         11112232 567   467889999999999999999887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.95  E-value=0.0028  Score=49.47  Aligned_cols=147  Identities=9%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             CCCEEEEecccCCCCceeeEE-----EecCcCcEEEEEE--cCCCCC-EEEEEeCCCeEEEEECC-------CCeeeeee
Q 026765           41 DQTARVWHIEPHGHGKVKDIE-----LRGHADSVDQLCW--DPKHAD-LIATASGDKTVRLWDAR-------SGKCSQQA  105 (233)
Q Consensus        41 D~~v~vW~~~~~~~~~~~~~~-----~~~h~~~v~~~~~--~~~~~~-~l~sg~~d~~i~iwd~~-------~~~~~~~~  105 (233)
                      +++|++|++++... .+..+.     +..-...++.+++  +|..+. +++....++.+..|++.       +.+.++.+
T Consensus        98 ~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            68899998864322 121110     0011145666777  665443 56677888999999882       23456777


Q ss_pred             eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC-----CCeeeeeeecC---ceeeEEEE--CCCCC-EEEEEe-CCCeE
Q 026765          106 ELSGENINITYKPDGTHIAVGNRDDELTILDVR-----KFKPIHRRKFG---YEVNEIAW--NMTGE-MFFLTT-GNGTV  173 (233)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~---~~~~~~~~--~~~~~-~~~~~~-~~~~v  173 (233)
                      ...+....+...+....|.++-++..|..++.+     +.+.+.....+   ..+..++.  .++++ ++++++ +++..
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            777888889999988899999999777777754     23333332222   35677766  55666 666666 67899


Q ss_pred             EEEecC-CceeeeEEe
Q 026765          174 EVLTYP-SLRPLDTVV  188 (233)
Q Consensus       174 ~~~~~~-~~~~~~~~~  188 (233)
                      .+|+.. +.+.+..|.
T Consensus       257 ~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          257 AIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEESSTTCCEEEEEE
T ss_pred             EEEECCCCCcEEEEEE
Confidence            999986 666776664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.93  E-value=0.0048  Score=49.36  Aligned_cols=177  Identities=9%  Similarity=-0.013  Sum_probs=106.0

Q ss_pred             CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeee-ecCCeeEEE
Q 026765           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINIT  115 (233)
Q Consensus        41 D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~-~~~~~~~~~  115 (233)
                      ...|+.-+++...  . .  .+......+..++|++.++.++.+-...+.|..+++....    ...... .-..+..++
T Consensus        91 ~~~I~~i~l~~~~--~-~--~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla  165 (400)
T 3p5b_L           91 RHEVRKMTLDRSE--Y-T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  165 (400)
T ss_dssp             TTEEEEECTTSCS--C-E--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred             cceeEEEccCCcc--e-e--EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence            4677777765321  1 1  1223446778999998766666666667889999886522    111111 113455688


Q ss_pred             ECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe-C-CCeEEEEecCCceeeeEEeeec
Q 026765          116 YKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-G-NGTVEVLTYPSLRPLDTVVAHT  191 (233)
Q Consensus       116 ~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~  191 (233)
                      +.+. ++..++-...+.|.+.++.......... .......++++|.+..+.... . .+.|...+.+.......+...-
T Consensus       166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l  245 (400)
T 3p5b_L          166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  245 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSC
T ss_pred             EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCC
Confidence            8874 4445556667889999887544332222 223467889998766666654 3 4678888765322221122223


Q ss_pred             CceeEEEECCCCCEEEEe-eCCCcEEEEecCC
Q 026765          192 AGCYCIAIDPMGRYFAVG-SADSLVSLWDISE  222 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~  222 (233)
                      ...+.|+++|++..|..+ +..+.|..+|++-
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            467899999877665544 4567899999863

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.93  E-value=0.0039  Score=48.28  Aligned_cols=177  Identities=7%  Similarity=-0.001  Sum_probs=105.5

Q ss_pred             CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEECC
Q 026765           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP  118 (233)
Q Consensus        41 D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~  118 (233)
                      ...|+..+++.......  ..+.+ ......++|++.++.++.+-...+.|..+++..+.........  ..+..+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~--~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENAT--IVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCE--EEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEE--EEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            35677777764321111  11222 2346688999876667667677789999998765321111111  2345688886


Q ss_pred             CC-CeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCCEEEEEe--CCCeEEEEecCCceeeeEEe-eecCc
Q 026765          119 DG-THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVV-AHTAG  193 (233)
Q Consensus       119 ~~-~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~~~~~  193 (233)
                      .+ +..++-...+.|.++++......... ........++++|.+..+..+.  ..+.|..++.+- .....+. ..-..
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~  167 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYW  167 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSC
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCC
Confidence            44 44455566788999998653322211 1123467888888766666665  357788877652 2222221 22345


Q ss_pred             eeEEEECCCCCEE-EEeeCCCcEEEEecC
Q 026765          194 CYCIAIDPMGRYF-AVGSADSLVSLWDIS  221 (233)
Q Consensus       194 v~~i~~~p~~~~l-as~s~dg~v~iwd~~  221 (233)
                      .+.++++|++..| .+=+..+.|..+|++
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence            6899999966655 444566889999986

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.93  E-value=0.0089  Score=52.14  Aligned_cols=196  Identities=13%  Similarity=0.115  Sum_probs=122.4

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe----c-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR----G-HADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...|+++..+++|.+-+ |..++-|.+|+.....   .......    + ....|.++...+++ .+. .|..++-|..|
T Consensus       309 ~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~g-~lW-iGt~~~Gl~~~  382 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKDK-NLW-IGTNDGGLNLY  382 (795)
T ss_dssp             SSCEEEEEECTTSCEEE-EESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTTS-CEE-EEESSSCEEEE
T ss_pred             CCcEEEEEEeCCcCEEE-EECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCCC-CEE-EEECCCCeEEE
Confidence            46799999988887554 5566778888764321   1111110    0 23468899887764 444 57777789999


Q ss_pred             ECCCCeeeeeee--------e-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----cCceeeEEEECCC
Q 026765           95 DARSGKCSQQAE--------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMT  160 (233)
Q Consensus        95 d~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~  160 (233)
                      |..+++......        . ...+.++...++++.|.+|+.++.+..+|..+.+...-..     ....+.++...++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  462 (795)
T 4a2l_A          383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE  462 (795)
T ss_dssp             CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred             cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence            987765433211        1 2345567777787756778887789999987654322111     1235778888887


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEe------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVV------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      |++++... + -+.+++..+.+......      .....|.++..+++|++.+...  +-+..||..++..
T Consensus       463 g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          463 GNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             SCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred             CCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence            87666554 4 47778876543321111      1235688999999888766443  4588888876654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.92  E-value=0.0091  Score=52.08  Aligned_cols=193  Identities=10%  Similarity=0.101  Sum_probs=118.8

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-------cCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-------GHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...|+++..+++|.+-+ |..++-+..|+....   ........       -....|.++...+++ .+|..|..++-|.
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~  430 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQ---RFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLS  430 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTC---CEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEE
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCC---cEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCcee
Confidence            45699999988887554 566667888876532   11111110       123568888887654 5244677777799


Q ss_pred             EEECCCCeeeeeee-----ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-------cCceeeEEEECCC
Q 026765           93 LWDARSGKCSQQAE-----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-------FGYEVNEIAWNMT  160 (233)
Q Consensus        93 iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~  160 (233)
                      .||..+++......     ....+.++...+++...+ |+. +.+..||..+.+......       ....+.++...++
T Consensus       431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  508 (795)
T 4a2l_A          431 ILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH  508 (795)
T ss_dssp             EEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT
T ss_pred             EEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCC
Confidence            99988776433221     123456677777776554 444 458889987654322111       1235778888888


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeEEe-------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVV-------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      |+.++... + -+..++..+.+.  .+.       .....|.++..+++|++.++.. + -+..||..+...
T Consensus       509 g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~  574 (795)
T 4a2l_A          509 KRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI  574 (795)
T ss_dssp             CCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred             CCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence            87766554 4 477777655443  221       1234688999999988665443 3 588888876643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0011  Score=54.44  Aligned_cols=153  Identities=17%  Similarity=0.169  Sum_probs=93.6

Q ss_pred             EEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC----CeeEEEE-------CCCCCeEEEEcCCC------
Q 026765           69 VDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSG----ENINITY-------KPDGTHIAVGNRDD------  130 (233)
Q Consensus        69 v~~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~l~~~~~d~------  130 (233)
                      ...|+|+| ++.+++++-...+.|++.|+.++..........    ....++|       ++++++|++....+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            45789998 355566665555789999998877654433221    3567999       99999776665543      


Q ss_pred             -cEEEEEcCC-Ceee-----eeeecCceeeEEEECCCC-CEEEEEeCCCeEEEEecC-------Ccee-----------e
Q 026765          131 -ELTILDVRK-FKPI-----HRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP-------SLRP-----------L  184 (233)
Q Consensus       131 -~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~-------~~~~-----------~  184 (233)
                       .+.+++... ....     ...........++.+|++ .++++-..++.+..++..       ++..           .
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~  300 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF  300 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred             ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence             255665332 1111     111111245677889954 455566678889999986       3332           1


Q ss_pred             eEEe--eecCceeEEEECCCCCEE-EEeeCCCcEEEEecC
Q 026765          185 DTVV--AHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS  221 (233)
Q Consensus       185 ~~~~--~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~  221 (233)
                      ..+.  +.....+.|+|+|+|++| ++=+....|+.++.+
T Consensus       301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            1221  122346789999999954 444566788886653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.85  E-value=0.0055  Score=47.28  Aligned_cols=174  Identities=9%  Similarity=0.012  Sum_probs=103.8

Q ss_pred             CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC----Ceeeeeeeec-CCeeEEEE
Q 026765           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAELS-GENINITY  116 (233)
Q Consensus        42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~----~~~~~~~~~~-~~~~~~~~  116 (233)
                      ..|+..++.....   .. .+ ........++|++.++.++++-..++.|..+++..    .......... ..+..+++
T Consensus        10 ~~I~~i~~~~~~~---~~-~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A           10 HEVRKMTLDRSEY---TS-LI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             SSEEEEETTSCCC---EE-EE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CeEEEEECCCcce---Ee-hh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            5677777754221   11 12 23356778999987666777777778999999875    2211111111 23456888


Q ss_pred             CCCCCeE-EEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC-C-CeEEEEecCCceeeeEEe-eec
Q 026765          117 KPDGTHI-AVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG-N-GTVEVLTYPSLRPLDTVV-AHT  191 (233)
Q Consensus       117 ~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~-~~~  191 (233)
                      ++.+..| ++-...+.|.++++.......... .......++++|.+..++.+.. . +.|..++.+. .....+. ..-
T Consensus        85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~  163 (316)
T 1ijq_A           85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENI  163 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSC
T ss_pred             eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCC
Confidence            8655444 555667889999986543222222 2235678899987666555543 3 6788877642 2222222 223


Q ss_pred             CceeEEEECCCCCEEE-EeeCCCcEEEEecC
Q 026765          192 AGCYCIAIDPMGRYFA-VGSADSLVSLWDIS  221 (233)
Q Consensus       192 ~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~  221 (233)
                      ...+.++++|++..|. +-+..+.|..+|++
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            4568999998776554 44456789999986

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.014  Score=50.80  Aligned_cols=196  Identities=17%  Similarity=0.066  Sum_probs=115.0

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ...|.++...++|.+. .|..++-+.+|+.......... .........|.++...+++ .+. .|..++-+..+|..++
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g-~lW-igt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNK-ENRELLSNSVLCSLKDSEG-NLW-FGTYLGNISYYNTRLK  437 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTS-CEE-EEETTEEEEEECSSSC
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEcc-CCCCCCCcceEEEEECCCC-CEE-EEeccCCEEEEcCCCC
Confidence            4569999988877654 3444566777776431100000 0001234578888887654 444 4677677889998776


Q ss_pred             eeeeeee---ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec------CceeeEEEECCCCCEEEEEeCC
Q 026765          100 KCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF------GYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus       100 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +......   ....+.++...+++. +..|+. +.+..+|..+.+.......      ...+.++...++|++++....+
T Consensus       438 ~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~  515 (781)
T 3v9f_A          438 KFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG  515 (781)
T ss_dssp             EEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred             cEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC
Confidence            5433221   123455677777765 444555 5688899765433221111      2357788888888766655445


Q ss_pred             CeEEEEecCCceeeeEEee----ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          171 GTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       171 ~~v~~~~~~~~~~~~~~~~----~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      | +..++..+.+. ..+..    ....|.++..+++|++.++. .+|.|..||..++.
T Consensus       516 G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          516 G-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD  570 (781)
T ss_dssp             C-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred             C-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence            5 66677654432 22221    13468899999988865544 46765888887653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.70  E-value=0.0082  Score=44.85  Aligned_cols=201  Identities=11%  Similarity=0.169  Sum_probs=118.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEE-EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s-~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +.+.+-.+.+..++|+|+++.|++ ...++.|...|..  . .....+.+.+. ...-.+++.+++ .++++.-.++.+.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g-~v~~~i~l~g~-~D~EGIa~~~~g-~~~vs~E~~~~l~   94 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--G-DLIRTIPLDFV-KDLETIEYIGDN-QFVISDERDYAIY   94 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--C-CEEEEEECSSC-SSEEEEEECSTT-EEEEEETTTTEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--C-CEEEEEecCCC-CChHHeEEeCCC-EEEEEECCCCcEE
Confidence            345566678999999998877665 4456665555543  1 22233333332 345667777664 4555655677888


Q ss_pred             EEECCCCee---eeeeeec-------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC---Ceeeeeee--------cCce
Q 026765           93 LWDARSGKC---SQQAELS-------GENINITYKPDGTHIAVGNRDDELTILDVRK---FKPIHRRK--------FGYE  151 (233)
Q Consensus        93 iwd~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~--------~~~~  151 (233)
                      ++++.....   .......       .....++++|++..|.++.+.....+|....   ...+....        .-..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            888765432   1222111       1124699999998887777665555555431   11111110        1124


Q ss_pred             eeEEEECCC-CCEEEEEeCCCeEEEEecCCceeeeEEeeec---------CceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          152 VNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ...++++|. +++++++..+..+..+|.. ++....+.-..         .....|+++|+|+.+++ ++.+.+++|...
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence            567888775 4566677778888888865 44444433221         24578999999986555 666766666544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.03  Score=48.71  Aligned_cols=196  Identities=13%  Similarity=0.102  Sum_probs=114.4

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--------cCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--------GHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ....|+++..+++|.+- .|..++-|..++.....   .......        -....|.++...+++ .+. .|..++-
T Consensus       311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lW-igt~~~G  384 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPT---FHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLW-IGTDGGG  384 (781)
T ss_dssp             SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCS---CEEEC----CCCSSCCSSSCEEEEEECTTS-CEE-EEEBSSC
T ss_pred             CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCc---ceeeccCccccccCCCCCcceEEEEEcCCC-CEE-EEeCCCc
Confidence            35679999998888754 45556777777764321   1111110        023568888887654 444 5665666


Q ss_pred             EEEEECCCCeeeeee---e-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCCCCE
Q 026765           91 VRLWDARSGKCSQQA---E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEM  163 (233)
Q Consensus        91 i~iwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~  163 (233)
                      |..||..++......   . ....+.++...+++. |.+|+.++.+..+|..+.+......   ....+.++...+++++
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l  463 (781)
T 3v9f_A          385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI  463 (781)
T ss_dssp             EEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE
Confidence            888987654432211   1 123345677676765 4457766778889876544322111   1235777877777765


Q ss_pred             EEEEeCCCeEEEEecCCceeeeEEeee-----cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          164 FFLTTGNGTVEVLTYPSLRPLDTVVAH-----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ++. +. +-+..++..+.+........     ...|.++..+++|++.+ |+.++-+..||.+...
T Consensus       464 wig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          464 WIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             EEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             EEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            554 44 45778887654332211111     35688999999887655 4444447778876553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.54  E-value=0.037  Score=48.27  Aligned_cols=177  Identities=10%  Similarity=0.005  Sum_probs=104.9

Q ss_pred             CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeee-ecCCeeEEE
Q 026765           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINIT  115 (233)
Q Consensus        41 D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~-~~~~~~~~~  115 (233)
                      ...|+..++....   ..  .+......+..++|++..+.++++-...+.|..+++....    ...... .-..+..++
T Consensus       403 ~~~Ir~i~l~~~~---~~--~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          403 RHEVRKMTLDRSE---YT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             BSSEEEECTTSCC---CE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             ccceeEeeccCCc---ce--eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            4567776665321   11  1223345677899988766666676677889989886531    111111 113345688


Q ss_pred             ECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe-CC-CeEEEEecCCceeeeEEeeec
Q 026765          116 YKPDGTHI-AVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-GN-GTVEVLTYPSLRPLDTVVAHT  191 (233)
Q Consensus       116 ~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~~~~~  191 (233)
                      +.+.+..| ++-...+.|.+.++.......... .......+++++.+..++.+. ++ +.|...++........+...-
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l  557 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  557 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence            88776544 455667889999987543322222 223477899998766666554 33 678888775332222222233


Q ss_pred             CceeEEEECCCCCEEEEe-eCCCcEEEEecCC
Q 026765          192 AGCYCIAIDPMGRYFAVG-SADSLVSLWDISE  222 (233)
Q Consensus       192 ~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~  222 (233)
                      ...+.|+++|.+..|..+ .....|...|++-
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            567899999776655544 4557788888863

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.48  E-value=0.022  Score=44.12  Aligned_cols=190  Identities=11%  Similarity=0.069  Sum_probs=98.5

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC--C
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA--R   97 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~--~   97 (233)
                      .+.+..+.+.+++..++.+ .++.|  |......  ........++...+..+.+.+++ .+++.+...+.++-+|-  .
T Consensus       121 ~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG--~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~  194 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSG--KNWQALVQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQT  194 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTCCE--EEESSTT--SSEEEEECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCS
T ss_pred             CCCeEEEEEECCCCEEEEe-CCccE--EEEcCCC--CCCEEeecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCC
Confidence            3457788877777666655 35543  3322222  22222233455678899998864 56555544334444553  1


Q ss_pred             CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----cCceeeEEEECCCCCEEEEEeCCCe
Q 026765           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      +-+... .........+.+.+++..++ .+.++.+...+....+.-....     ....+..+.+.+++..++++. ++.
T Consensus       195 tW~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~  271 (327)
T 2xbg_A          195 AWEPHN-RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA  271 (327)
T ss_dssp             SCEEEE-CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC
T ss_pred             ceeECC-CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe
Confidence            212211 11223445678888887654 4456766665321111111111     122467788887776666554 565


Q ss_pred             EEEEecCCceeeeEEe---eecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          173 VEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      +. +..+.++.-..+.   .....++++.+.++++ +++++.+|.|.-++-
T Consensus       272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            52 3333232222222   1235678888875544 556667887776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.19  E-value=0.001  Score=57.21  Aligned_cols=155  Identities=9%  Similarity=-0.006  Sum_probs=89.6

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC----Ceeeeeeee-cCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCC
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAEL-SGENINITYKPDG-THIAVGNRDDELTILDVRKF  140 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~----~~~~~~~~~-~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~  140 (233)
                      ..+..++|++.++.++++-...+.|..+++..    ......... -..+..+++.+.+ +.+++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            34567888887665655555678899999875    121111111 1123457777544 44445456678999988654


Q ss_pred             eeeeeeec-CceeeEEEECCCCCEEEEEeC-C-CeEEEEecCCceeeeEEe-eecCceeEEEECCCCC-EEEEeeCCCcE
Q 026765          141 KPIHRRKF-GYEVNEIAWNMTGEMFFLTTG-N-GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGR-YFAVGSADSLV  215 (233)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~-~las~s~dg~v  215 (233)
                      ........ ......++++|.+..++.+.. . +.|..++.... ....+. ..-...+.|+++|++. ++++-+..+.|
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            33222221 234677888887665555542 2 67777665422 112221 1223457899998765 44555567889


Q ss_pred             EEEecCC
Q 026765          216 SLWDISE  222 (233)
Q Consensus       216 ~iwd~~~  222 (233)
                      .++|++.
T Consensus       565 ~~~d~dG  571 (699)
T 1n7d_A          565 SSIDVNG  571 (699)
T ss_dssp             EEECSSS
T ss_pred             EEEccCC
Confidence            9999863

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.11  E-value=0.047  Score=41.37  Aligned_cols=188  Identities=10%  Similarity=0.094  Sum_probs=93.3

Q ss_pred             CCCEEEEEeCC-----CCEEEEecccCCCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCC
Q 026765           31 TGTKLASGSVD-----QTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTVRLWDARSG   99 (233)
Q Consensus        31 ~~~~l~s~~~D-----~~v~vW~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~   99 (233)
                      ++..++.|+.+     ..+.+||+...... ......++........+..   +.++++.|+.+     ..+.+||..+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            46677777765     35777776543200 2111111111111222222   24566777654     35788998887


Q ss_pred             eeeeeeeecCCe--eEEEECCCCCeEEEEcCC-----CcEEEEEcCCCeeeeeeecCce-eeEEEECCCCCEEEEEeCC-
Q 026765          100 KCSQQAELSGEN--INITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGN-  170 (233)
Q Consensus       100 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  170 (233)
                      +...........  ..++. .+++.++.|+.+     ..+..||+.+.+.........+ ........+++.++.|+.+ 
T Consensus       139 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  217 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG  217 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             eEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence            654432222111  12222 256666677654     4588899877654332221111 1111112256666776653 


Q ss_pred             ----CeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCC-----CcEEEEecCCcE
Q 026765          171 ----GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEML  224 (233)
Q Consensus       171 ----~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d-----g~v~iwd~~~~~  224 (233)
                          ..+.+||..+.+  .+..+........++.+  ++++++.|+.+     ..|.+||+++.+
T Consensus       218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence                467888876543  22211111111122233  56777888765     357889987664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.07  E-value=0.071  Score=41.74  Aligned_cols=201  Identities=16%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe---cCcCcEEEEEEcCC---CCCEEEEEeCC
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPK---HADLIATASGD   88 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~~l~sg~~d   88 (233)
                      .+...-..-+.++|.|+|.++++ ..++.|++++ .  .. ......++   .-......++++|+   ++.+.++-..+
T Consensus        25 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~--g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           25 EVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR-E--GR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             EEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE-T--TE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE-C--CC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            34333445679999999986665 4568888887 2  11 11111111   11346788999997   45555554432


Q ss_pred             -----CeEEEEECCCCeee---eeee-ec------CCeeEEEECCCCCeEEEEcC-------------CCcEEEEEcCCC
Q 026765           89 -----KTVRLWDARSGKCS---QQAE-LS------GENINITYKPDGTHIAVGNR-------------DDELTILDVRKF  140 (233)
Q Consensus        89 -----~~i~iwd~~~~~~~---~~~~-~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~  140 (233)
                           ..|..++...+...   ..+. ..      +....++|.|+|...++.+.             .++|.-++....
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~  179 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE  179 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence                 56777877643211   1111 11      12346999999976555432             144555554320


Q ss_pred             ------------eeeeeeecC-ceeeEEEECC-CCCEEEEEeCCCe--------EEEEecCC----------------ce
Q 026765          141 ------------KPIHRRKFG-YEVNEIAWNM-TGEMFFLTTGNGT--------VEVLTYPS----------------LR  182 (233)
Q Consensus       141 ------------~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--------v~~~~~~~----------------~~  182 (233)
                                  ........+ .....++|++ +++++++-...+.        +.+...-.                ..
T Consensus       180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                        000111111 2366789999 6776666554443        33332110                01


Q ss_pred             eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       183 ~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +...+ .+......++| .+|..+++.-..+.|...+++.
T Consensus       260 p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~  297 (352)
T 2ism_A          260 PLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG  297 (352)
T ss_dssp             CSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred             CeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence            22222 11223456677 4666666666667777777653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.04  E-value=0.071  Score=41.20  Aligned_cols=185  Identities=14%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE-EEEECCC
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV-RLWDARS   98 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i-~iwd~~~   98 (233)
                      ...++++.|++ +..++ ++.++.|  +.................+...+..+.+.+++ .+++. +.++.| +-.|  .
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~~~g~v~~S~D--g  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMI-TNVGAIYRTKD--S  150 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEEEE-ETTCCEEEESS--T
T ss_pred             CccEEEEEecC-CeEEE-EECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCC-CEEEE-eCCccEEEEcC--C
Confidence            44688999976 44444 4556644  33322222221110001123456677765543 45544 445543 3333  2


Q ss_pred             Ce-eeeee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEc--CCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765           99 GK-CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (233)
Q Consensus        99 ~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  174 (233)
                      ++ ..... ........+.+.|++.+++++......+-.|-  .+.+.+.. .....+..+.+.++++.+ +.+.+|.+.
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~G~~~  228 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLW-MIVNGGKIA  228 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEE-EEeCCceEE
Confidence            22 11111 11234567888998887776654443344442  33444321 223456778888888765 445567766


Q ss_pred             EEecCCceeeeEEe----eecCceeEEEECCCCCEEEEeeCCCcE
Q 026765          175 VLTYPSLRPLDTVV----AHTAGCYCIAIDPMGRYFAVGSADSLV  215 (233)
Q Consensus       175 ~~~~~~~~~~~~~~----~~~~~v~~i~~~p~~~~las~s~dg~v  215 (233)
                      ..+.+.++.-..+.    .+...+.++++.|++..++++. +|.|
T Consensus       229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            65322122222111    1223578899998877777654 5655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.88  E-value=0.17  Score=42.98  Aligned_cols=198  Identities=6%  Similarity=-0.037  Sum_probs=118.5

Q ss_pred             ccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEec------CcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           21 KKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG------HADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.+++|++.+..|.-+. ..+.|+.++.+.  .... .+ +..      .......++++..+.++..+-+..+.|.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g--~~~~-~v-~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v  415 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG--SQGF-TV-VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV  415 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCE-EE-EC--------CCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCC--CCce-EE-EEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEE
Confidence            4578999998776665544 467777776542  1111 11 111      23457889998877777777778889999


Q ss_pred             EECCCCeeeeeeee--cCCeeEEEECC-CCCeEEEEcCCC--cEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEE
Q 026765           94 WDARSGKCSQQAEL--SGENINITYKP-DGTHIAVGNRDD--ELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        94 wd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  167 (233)
                      .++.... ...+..  -..+..+++.| .|..+++-....  .|...++........... -...+.+++.+..+.+..+
T Consensus       416 ~~~~G~~-~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~  494 (628)
T 4a0p_A          416 TRLDGRS-VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA  494 (628)
T ss_dssp             EETTSCE-EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EECCCCe-EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEE
Confidence            9986443 222222  24567899999 454444433333  566666654332211111 1246788998887666665


Q ss_pred             e-CCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          168 T-GNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       168 ~-~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      . ..+.|..++++. .....+. ........+++.. +..+.+=...+.|...|..+++.
T Consensus       495 D~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~  552 (628)
T 4a0p_A          495 DSDLRRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG  552 (628)
T ss_dssp             ETTTTEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred             eCCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence            4 568898888753 2223332 2334467788765 55556655667788888776653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.81  E-value=0.12  Score=40.47  Aligned_cols=194  Identities=11%  Similarity=0.084  Sum_probs=107.4

Q ss_pred             EEEEECcCCCEEEEEe------------CCCCEEEEecccCCCCceeeEEEec-----CcCcEEEEEEcC--CCC-CEEE
Q 026765           24 HSVAWNCTGTKLASGS------------VDQTARVWHIEPHGHGKVKDIELRG-----HADSVDQLCWDP--KHA-DLIA   83 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~------------~D~~v~vW~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~--~~~-~~l~   83 (233)
                      -.+...|+|..+++++            .+|.|.++|++... .....+.+.+     ..-....+.+.+  ++. .+++
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~-~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE-PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSS-CCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCC-CceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3555678775555542            68989999876322 2233344443     123455666654  232 2444


Q ss_pred             EEeC--CCeEEEEECCCC--eeeeeeeecC----CeeEEEECCCCCeEEEEcC-----------------CCcEEEEEcC
Q 026765           84 TASG--DKTVRLWDARSG--KCSQQAELSG----ENINITYKPDGTHIAVGNR-----------------DDELTILDVR  138 (233)
Q Consensus        84 sg~~--d~~i~iwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~  138 (233)
                      +-..  +.+|.+|++...  .........+    ....+.+.++|...++...                 .+.+.-+|..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4333  567888876543  2222212222    2346888888887665431                 1334444442


Q ss_pred             CCeeeeeeecCceeeEEEECCCCCEEEEE-eCCCeEEEEecCC-cee--eeEEeeecCceeEEEECC-CCCEEEEeeCC-
Q 026765          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPS-LRP--LDTVVAHTAGCYCIAIDP-MGRYFAVGSAD-  212 (233)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~--~~~~~~~~~~v~~i~~~p-~~~~las~s~d-  212 (233)
                      ..+.+  ..--...+.++|+|+++.+.++ +..+.+..|++.. ++.  ...+ ......-.+++++ +|++.+++..+ 
T Consensus       212 ~~~~~--~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g  288 (355)
T 3sre_A          212 DVRVV--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG  288 (355)
T ss_dssp             CCEEE--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred             eEEEe--ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence            21111  1111247899999999887766 4578999998853 221  1223 2234556789999 59988877644 


Q ss_pred             CcEEEEecC
Q 026765          213 SLVSLWDIS  221 (233)
Q Consensus       213 g~v~iwd~~  221 (233)
                      +.|..||..
T Consensus       289 ~~v~~~~P~  297 (355)
T 3sre_A          289 MRIFFYDAE  297 (355)
T ss_dssp             HHHHSCCTT
T ss_pred             eEEEEECCC
Confidence            345555544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.80  E-value=0.078  Score=40.19  Aligned_cols=142  Identities=14%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             CCEEEEEeCCC-----eEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCC-------CcEEEEEcCCCeeee
Q 026765           79 ADLIATASGDK-----TVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRD-------DELTILDVRKFKPIH  144 (233)
Q Consensus        79 ~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~  144 (233)
                      ..+++.|+.++     .+.+||..+.+...........  ..++. .+++.++.|+.+       ..+.+||+.+.+...
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            45667777553     5778898877654432222111  12222 255566666542       347889987655433


Q ss_pred             eeecCc--eeeEEEECCCCCEEEEEeCC-----CeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCC--
Q 026765          145 RRKFGY--EVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--  213 (233)
Q Consensus       145 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg--  213 (233)
                      ......  .-..+. ..+++.++.|+.+     ..+.+||..+.+  .+..+.........+.+  ++++++.|+.++  
T Consensus       188 ~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~  264 (302)
T 2xn4_A          188 IAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSC  264 (302)
T ss_dssp             ECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSS
T ss_pred             CCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCc
Confidence            222111  111111 2256677776653     467888876543  22211110011112222  567788887664  


Q ss_pred             ---cEEEEecCCcE
Q 026765          214 ---LVSLWDISEML  224 (233)
Q Consensus       214 ---~v~iwd~~~~~  224 (233)
                         .+.+||+.+.+
T Consensus       265 ~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          265 NLASVEYYNPTTDK  278 (302)
T ss_dssp             BCCCEEEEETTTTE
T ss_pred             ccccEEEEcCCCCe
Confidence               48899988664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.74  E-value=0.14  Score=40.13  Aligned_cols=132  Identities=14%  Similarity=0.161  Sum_probs=75.0

Q ss_pred             CCCeEEEEECCCCe-eeeeeeecC--------CeeEEEECC--CCC-eE-EEEcC--CCcEEEEEcCCC--eeee--eee
Q 026765           87 GDKTVRLWDARSGK-CSQQAELSG--------ENINITYKP--DGT-HI-AVGNR--DDELTILDVRKF--KPIH--RRK  147 (233)
Q Consensus        87 ~d~~i~iwd~~~~~-~~~~~~~~~--------~~~~~~~~~--~~~-~l-~~~~~--d~~i~i~d~~~~--~~~~--~~~  147 (233)
                      .+|.|.++|..+.. ....+...+        ....+.+.+  ++. +| ++-..  +..+.+|++...  ....  ...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987431 122222222        233455433  454 34 44343  456788776542  2211  111


Q ss_pred             c--CceeeEEEECCCCCEEEEEe-----------------CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765          148 F--GYEVNEIAWNMTGEMFFLTT-----------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       148 ~--~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                      .  -...+.+...++|.+++...                 ..|.+..++.  .+ ...+...-...+.++|+|+++.|..
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence            1  12468888889998777654                 1244444443  32 2333333455789999999987655


Q ss_pred             ee-CCCcEEEEecC
Q 026765          209 GS-ADSLVSLWDIS  221 (233)
Q Consensus       209 ~s-~dg~v~iwd~~  221 (233)
                      +. ..+.|..|++.
T Consensus       238 adt~~~~I~~~~~~  251 (355)
T 3sre_A          238 AELLAHKIHVYEKH  251 (355)
T ss_dssp             EEGGGTEEEEEEEC
T ss_pred             EeCCCCeEEEEEEC
Confidence            54 57889999986

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.73  E-value=0.089  Score=39.97  Aligned_cols=143  Identities=11%  Similarity=0.096  Sum_probs=73.2

Q ss_pred             CCEEEEEeCC----CeEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCC------CcEEEEEcCCCeeeeee
Q 026765           79 ADLIATASGD----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRR  146 (233)
Q Consensus        79 ~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~  146 (233)
                      ..+++.|+.+    ..+.+||..+.+...........  ..++. .+++.++.|+.+      ..+.+||+.+.+.....
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            4577777755    66888999887654432222111  12222 255666677654      45888998776543322


Q ss_pred             ecCce-eeEEEECCCCCEEEEEeC---------CCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCC--
Q 026765          147 KFGYE-VNEIAWNMTGEMFFLTTG---------NGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD--  212 (233)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d--  212 (233)
                      ....+ ........+++.++.|+.         ...+.+||..+.+  .+..+......-..+.+  ++++++.|+.+  
T Consensus       135 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~  212 (306)
T 3ii7_A          135 SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGL  212 (306)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETT
T ss_pred             CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCC
Confidence            11111 111111125666666653         3457788876542  22111110111112223  56677777754  


Q ss_pred             ---CcEEEEecCCcE
Q 026765          213 ---SLVSLWDISEML  224 (233)
Q Consensus       213 ---g~v~iwd~~~~~  224 (233)
                         ..+.+||+.+.+
T Consensus       213 ~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          213 GGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EEBCCEEEEETTTTE
T ss_pred             CCCceEEEeeCCCCc
Confidence               357888887653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.63  E-value=0.26  Score=41.74  Aligned_cols=197  Identities=8%  Similarity=-0.021  Sum_probs=110.9

Q ss_pred             ccEEEEEECcCCCEEEEE-eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765           21 KKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (233)
Q Consensus        21 ~~V~~~~~~~~~~~l~s~-~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   99 (233)
                      ..+.+++|++.+..|.-+ ...+.|+.++++..  .. . ..+.........++++..++++..+-...+.|.+.++...
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~--~~-~-~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS--GS-Q-FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SC-E-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC--cc-E-EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            346788998866555444 45677777776532  11 1 1122223456678887666667777677889999998754


Q ss_pred             eeeeeee-ecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEE-eCCCeEE
Q 026765          100 KCSQQAE-LSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTVE  174 (233)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~  174 (233)
                      ....... .-..+..+++.|....|....  ....|...++........... -...+.++++++.+.+..+ ...+.|.
T Consensus       425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~  504 (619)
T 3s94_A          425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE  504 (619)
T ss_dssp             SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEE
Confidence            3222111 113467799998644444333  235676666654322211111 1346788898866666555 4567888


Q ss_pred             EEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          175 VLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       175 ~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      .+++.... ...+ .........+++..+ ..+.+-...+.|..-|..++
T Consensus       505 ~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          505 VMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred             EEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence            88875322 1222 122223345666543 44455555667777777665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.55  E-value=0.19  Score=39.23  Aligned_cols=58  Identities=14%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEecCCcee------eeEEeeecCceeEEEECCCCCEEEEee
Q 026765          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP------LDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~v~~i~~~p~~~~las~s  210 (233)
                      ...+++ .+|+.++..-..+.|...+++....      ...+......+..+++.|+|.++++..
T Consensus       270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            445666 4667766666777888777643221      122222335788999999998766654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.54  E-value=0.3  Score=44.60  Aligned_cols=145  Identities=8%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             EcCCCCCEEEEEe----------CCCeEEEEECCCCeee--eeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765           74 WDPKHADLIATAS----------GDKTVRLWDARSGKCS--QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (233)
Q Consensus        74 ~~~~~~~~l~sg~----------~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (233)
                      |..+...+++.|.          ..|.|.+|++..++..  ......+.+.+++-- +| +++++- ..++.+|++...+
T Consensus       839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK  915 (1158)
T ss_dssp             CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred             EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence            4333345777765          3588999998755432  334455666665422 35 444433 4789999987654


Q ss_pred             eee-eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEEE
Q 026765          142 PIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSL  217 (233)
Q Consensus       142 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~i  217 (233)
                      .+. ....-..+..+.....++++++|+.-..+.++.++.. ..+..+..  +...++++.+--+ ..++.+..+|.+.+
T Consensus       916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~v  994 (1158)
T 3ei3_A          916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFV  994 (1158)
T ss_dssp             CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEE
T ss_pred             eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEE
Confidence            332 1111111222233335789999998888887765422 22223332  3345677776433 47777999999999


Q ss_pred             EecCC
Q 026765          218 WDISE  222 (233)
Q Consensus       218 wd~~~  222 (233)
                      .....
T Consensus       995 l~~~~  999 (1158)
T 3ei3_A          995 CQKDS  999 (1158)
T ss_dssp             EEECT
T ss_pred             EecCC
Confidence            87654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.53  E-value=0.17  Score=38.38  Aligned_cols=186  Identities=8%  Similarity=0.057  Sum_probs=91.6

Q ss_pred             CCCEEEEEeCC----CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC------CeEEEEECCCCe
Q 026765           31 TGTKLASGSVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDARSGK  100 (233)
Q Consensus        31 ~~~~l~s~~~D----~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d------~~i~iwd~~~~~  100 (233)
                      ++..++.|+.+    ..+.+||+...  .......++........+..   +.++++.|+.+      ..+.+||..+.+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTT--EEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCC--eEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            56677777765    45666665432  11111111111111222222   34577777765      458899998876


Q ss_pred             eeeeeeecCCe--eEEEECCCCCeEEEEcC---------CCcEEEEEcCCCeeeeeeecCce-eeEEEECCCCCEEEEEe
Q 026765          101 CSQQAELSGEN--INITYKPDGTHIAVGNR---------DDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTT  168 (233)
Q Consensus       101 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  168 (233)
                      ...........  ..++. .+++.++.|+.         ...+.+||+.+.+.........+ ........+++.++.|+
T Consensus       130 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  208 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG  208 (306)
T ss_dssp             EEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             eEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeC
Confidence            54432222111  12222 25556666653         34478899877654332222111 11111112566666665


Q ss_pred             CC-----CeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCC-----CcEEEEecCCcE
Q 026765          169 GN-----GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEML  224 (233)
Q Consensus       169 ~~-----~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d-----g~v~iwd~~~~~  224 (233)
                      .+     ..+.+||..+.+  .+..+........++.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            43     457788876532  22222111111223333  56778888754     458889988764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.38  E-value=0.29  Score=39.32  Aligned_cols=128  Identities=9%  Similarity=0.172  Sum_probs=78.6

Q ss_pred             CCCeEEEEECCCCeeeeeeeec-----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe----------ee--eeeec-
Q 026765           87 GDKTVRLWDARSGKCSQQAELS-----GENINITYKPDGTHIAVGNRDDELTILDVRKFK----------PI--HRRKF-  148 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~--~~~~~-  148 (233)
                      .++.||.-++.....-+.+...     ..+..+..+|+|+++|..+.. .+.|..+....          .+  ..+.. 
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcC
Confidence            3467777776633222222222     134568899999999988654 67887765211          01  11221 


Q ss_pred             ------CceeeEEEECCCC---CEEEEEeCCCeEEEEecCCc--eeeeEEe---------eecCceeEEEECCCCCEEEE
Q 026765          149 ------GYEVNEIAWNMTG---EMFFLTTGNGTVEVLTYPSL--RPLDTVV---------AHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       149 ------~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~--~~~~~~~---------~~~~~v~~i~~~p~~~~las  208 (233)
                            ..++..+.|||-+   ..+++-..|+.+++||+...  ++. .+.         .....|.+++|++++-.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                  2458899999975   57999999999999998641  222 221         12256788899887654444


Q ss_pred             --eeCCCcEE
Q 026765          209 --GSADSLVS  216 (233)
Q Consensus       209 --~s~dg~v~  216 (233)
                        .+++|-|+
T Consensus       197 l~~t~~GDIY  206 (452)
T 3pbp_A          197 LNTTEGGDIF  206 (452)
T ss_dssp             EECTTSCEEE
T ss_pred             EecCCCCCEE
Confidence              33666553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.16  E-value=0.079  Score=38.57  Aligned_cols=100  Identities=13%  Similarity=0.108  Sum_probs=60.9

Q ss_pred             eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee--------eEEEECCCCCEEEEEeCCCeEEEEecCCce
Q 026765          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--------NEIAWNMTGEMFFLTTGNGTVEVLTYPSLR  182 (233)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  182 (233)
                      ...++|+|++...++  .++.+.-.+..+.....=......+        ..+.|.++|.+.++  .||.+.-++.++..
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD  118 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence            347999999987666  6676655554331110000011223        57889999998888  55888877754322


Q ss_pred             eee-----EEe--eecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          183 PLD-----TVV--AHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       183 ~~~-----~~~--~~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      ...     ...  ..-..+..|.+.|+|.+.|..  |+.++
T Consensus       119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            110     111  112467899999999988877  77653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.12  E-value=0.31  Score=37.13  Aligned_cols=143  Identities=13%  Similarity=0.151  Sum_probs=72.3

Q ss_pred             CCEEEEEeCC--------CeEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcC-C-----CcEEEEEcCCCee
Q 026765           79 ADLIATASGD--------KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNR-D-----DELTILDVRKFKP  142 (233)
Q Consensus        79 ~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~  142 (233)
                      ..+++.|+.+        ..+.+||..+.+...........  .+++. .+++.++.|+. +     ..+.+||+.+.+.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            4566777642        45888999887654332222111  12222 35556666765 2     3588899876544


Q ss_pred             eeeeecCce-eeEEEECCCCCEEEEEeCCC-----eEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCC-
Q 026765          143 IHRRKFGYE-VNEIAWNMTGEMFFLTTGNG-----TVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-  213 (233)
Q Consensus       143 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg-  213 (233)
                      ........+ ....+...+++.++.|+.++     .+.+||..+.+  .+..+........++.+  ++++++.|+.++ 
T Consensus       178 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~  255 (315)
T 4asc_A          178 KELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATL  255 (315)
T ss_dssp             EECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEE
T ss_pred             EECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcccc
Confidence            322211111 11111122667777776543     57777776542  22211111111122233  567777777642 


Q ss_pred             -------------cEEEEecCCcE
Q 026765          214 -------------LVSLWDISEML  224 (233)
Q Consensus       214 -------------~v~iwd~~~~~  224 (233)
                                   .+.+||+++.+
T Consensus       256 ~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          256 ETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             ECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CcCCccccccccCcEEEecCCCCh
Confidence                         36788887664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.00  E-value=0.31  Score=39.18  Aligned_cols=113  Identities=13%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCC---C-----Ccee--eEEEec----CcCcEEEEEEcCCCCC--EEEEE
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---H-----GKVK--DIELRG----HADSVDQLCWDPKHAD--LIATA   85 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~---~-----~~~~--~~~~~~----h~~~v~~~~~~~~~~~--~l~sg   85 (233)
                      .|..+..||+|++||..+ +..|.|-.+....   .     ..+.  ...+..    ...+|..+.|||-+..  .|++=
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            567799999999999886 5688887765211   0     0111  122211    2467999999997533  67788


Q ss_pred             eCCCeEEEEECCCCeee-eeee-----ec-----CCeeEEEECCCCCeEEEEc--CCCcEEEE
Q 026765           86 SGDKTVRLWDARSGKCS-QQAE-----LS-----GENINITYKPDGTHIAVGN--RDDELTIL  135 (233)
Q Consensus        86 ~~d~~i~iwd~~~~~~~-~~~~-----~~-----~~~~~~~~~~~~~~l~~~~--~d~~i~i~  135 (233)
                      ..|+.|++||+...... ..+.     +.     ..+.+++|..++-.|.+.+  +.|.|.-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            89999999999753211 1111     11     3456788988887776644  66766543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.75  E-value=0.44  Score=35.91  Aligned_cols=143  Identities=13%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             CCEEEEEeCC-----CeEEEEECCCCe---eeeeeeecCC--eeEEEECCCCCeEEEEcCC-----CcEEEEEcCCCeee
Q 026765           79 ADLIATASGD-----KTVRLWDARSGK---CSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPI  143 (233)
Q Consensus        79 ~~~l~sg~~d-----~~i~iwd~~~~~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  143 (233)
                      ..+++.|+.+     ..+.+||..+.+   ..........  ...++. .+++.++.|+.+     ..+.+||+.+.+..
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            4577777755     468899988766   4332222111  112222 255666666644     35788998765543


Q ss_pred             eeeecCce-eeEEEECCCCCEEEEEeCC-----CeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCC---
Q 026765          144 HRRKFGYE-VNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---  212 (233)
Q Consensus       144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d---  212 (233)
                      .......+ ........+++.++.|+.+     ..+.+||..+.+  .+..+........++.+  ++++++.|+.+   
T Consensus       142 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~  219 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTA  219 (301)
T ss_dssp             EEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSS
T ss_pred             ECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCc
Confidence            32222111 1111112256667776543     467788876542  22111111111122223  56777888765   


Q ss_pred             --CcEEEEecCCcE
Q 026765          213 --SLVSLWDISEML  224 (233)
Q Consensus       213 --g~v~iwd~~~~~  224 (233)
                        ..+.+||+.+.+
T Consensus       220 ~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          220 HLSSVEAYNIRTDS  233 (301)
T ss_dssp             BCCCEEEEETTTTE
T ss_pred             ccceEEEEeCCCCc
Confidence              458889988664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.65  E-value=0.58  Score=36.59  Aligned_cols=203  Identities=14%  Similarity=0.084  Sum_probs=105.7

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe---cCcCcEEEEEEcCC---CCCEEEEEeC-
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPK---HADLIATASG-   87 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~~l~sg~~-   87 (233)
                      .+..--..-..++|.|+|.++++ ..++.|++++..  .  ......++   .-......++++|+   ++.+.++-.. 
T Consensus        23 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G--~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~   97 (354)
T 3a9g_A           23 EVASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISPS--G--KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF   97 (354)
T ss_dssp             EEECSCSCEEEEEEEETTEEEEE-ETTTEEEEECSS--C--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             EEeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--C--ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence            33333455679999999986655 456888887632  1  11111111   11245788999997   5555555432 


Q ss_pred             --C----CeEEEEECCCC--eee--e-e---eeec--CCeeEEEECCCCCeEEEEcC-------------CCcEEEEEcC
Q 026765           88 --D----KTVRLWDARSG--KCS--Q-Q---AELS--GENINITYKPDGTHIAVGNR-------------DDELTILDVR  138 (233)
Q Consensus        88 --d----~~i~iwd~~~~--~~~--~-~---~~~~--~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~  138 (233)
                        +    ..|..|+....  ...  . .   +...  +....++|.|||...++.+.             .++|.-++..
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence              3    56777776543  111  1 1   1111  12345899999986665432             1345444443


Q ss_pred             CCe-------eeeeeecC-ceeeEEEECC-CCCEEEEEeCCC---eEEEEecCC----------------ceeeeEEeee
Q 026765          139 KFK-------PIHRRKFG-YEVNEIAWNM-TGEMFFLTTGNG---TVEVLTYPS----------------LRPLDTVVAH  190 (233)
Q Consensus       139 ~~~-------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~---~v~~~~~~~----------------~~~~~~~~~~  190 (233)
                      ..-       .......+ .....++|++ +++++++-...+   .+.+...-.                ..++..+...
T Consensus       178 G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence            210       00111112 2356789999 676666554432   233332100                0122222011


Q ss_pred             cCceeEEEE-------CCCCCEEEEeeCCCcEEEEecCC
Q 026765          191 TAGCYCIAI-------DPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       191 ~~~v~~i~~-------~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ...+..+++       ..+|.++++.-..+.|...+++.
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            224567777       35677777766777888888874

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.37  E-value=0.27  Score=40.94  Aligned_cols=110  Identities=9%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             eecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCee-------------eeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765          106 ELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP-------------IHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (233)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (233)
                      .....+-.+.++|||+++++++ .+.++.++|.++...             +-..+.+......+|.++|+...+---|.
T Consensus       320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence            3344445688899999988665 568899999874211             22334566778899999996666666899


Q ss_pred             eEEEEecCCc----------eeeeEEeeecCceeEE-----EECCCCCEEEEee---CCCcE
Q 026765          172 TVEVLTYPSL----------RPLDTVVAHTAGCYCI-----AIDPMGRYFAVGS---ADSLV  215 (233)
Q Consensus       172 ~v~~~~~~~~----------~~~~~~~~~~~~v~~i-----~~~p~~~~las~s---~dg~v  215 (233)
                      .+.-|++...          ..+..+..|-.+-.-.     .-.|+|++|++..   .|+.+
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl  461 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL  461 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence            9999997542          2344444443322111     2367888888865   46544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.27  E-value=0.7  Score=35.18  Aligned_cols=142  Identities=13%  Similarity=0.172  Sum_probs=71.7

Q ss_pred             CCEEEEEeCC-------CeEEEEECCCCeeeeeeeecCCee--EEEECCCCCeEEEEcC------CCcEEEEEcCCCeee
Q 026765           79 ADLIATASGD-------KTVRLWDARSGKCSQQAELSGENI--NITYKPDGTHIAVGNR------DDELTILDVRKFKPI  143 (233)
Q Consensus        79 ~~~l~sg~~d-------~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~  143 (233)
                      ..+++.|+.+       ..+.+||..+.+............  .++. .+++.++.|+.      ...+.+||+.+.+..
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            4566777754       347788988876544322222111  1222 35566666664      235889998776543


Q ss_pred             eeeecCc--eeeEEEECCCCCEEEEEeCC-----CeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCC--
Q 026765          144 HRRKFGY--EVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD--  212 (233)
Q Consensus       144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~d--  212 (233)
                      .......  ....+. ..+++.++.|+.+     ..+.+||..+.  +.+..+.........+.+  ++++++.|+.+  
T Consensus       189 ~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~  265 (318)
T 2woz_A          189 DLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMI  265 (318)
T ss_dssp             EECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCB
T ss_pred             ECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeecc
Confidence            3222111  111111 1256777776543     34667776543  222221111111122222  46777777754  


Q ss_pred             ------------CcEEEEecCCcE
Q 026765          213 ------------SLVSLWDISEML  224 (233)
Q Consensus       213 ------------g~v~iwd~~~~~  224 (233)
                                  ..+.+||+.+.+
T Consensus       266 ~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          266 QLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             C----CCBCCBCCCEEEEETTTTE
T ss_pred             CCCCceeccceeeeEEEEeCCCCE
Confidence                        357788887754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.25  E-value=0.68  Score=34.89  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=72.3

Q ss_pred             CCEEEEEeCC-----CeEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCC-----cEEEEEcCCCeeeeee
Q 026765           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR  146 (233)
Q Consensus        79 ~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~  146 (233)
                      ..+++.|+.+     ..+.+||..+.+...........  ..++. .++..++.|+.++     .+.+||+.+.+.....
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            4577777754     35788998887654432222111  12222 2556666676543     4678888765543322


Q ss_pred             ecCce--eeEEEECCCCCEEEEEeC-------CCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCC--
Q 026765          147 KFGYE--VNEIAWNMTGEMFFLTTG-------NGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--  213 (233)
Q Consensus       147 ~~~~~--~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg--  213 (233)
                      ....+  -..+. ..+++.++.|+.       ...+.+||..+.+  .+..+........++.+  ++++++.|+.++  
T Consensus       141 ~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          141 PMNTRRSSVGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPL  217 (302)
T ss_dssp             CCSSCCBSCEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSS
T ss_pred             CCCCcccCceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCc
Confidence            21111  11111 125666666653       2457788876542  22111111111122223  567778887653  


Q ss_pred             ---cEEEEecCCcE
Q 026765          214 ---LVSLWDISEML  224 (233)
Q Consensus       214 ---~v~iwd~~~~~  224 (233)
                         .+.+||+.+.+
T Consensus       218 ~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          218 VRKSVEVYDPTTNA  231 (302)
T ss_dssp             BCCCEEEEETTTTE
T ss_pred             ccceEEEEeCCCCC
Confidence               58889987654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.07  E-value=0.8  Score=34.71  Aligned_cols=141  Identities=11%  Similarity=0.084  Sum_probs=73.0

Q ss_pred             CCEEEEEeCC-----CeEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCC-----CcEEEEEcCCCeeeeee
Q 026765           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRR  146 (233)
Q Consensus        79 ~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~  146 (233)
                      .++++.|+.+     ..+.+||..+.+...........  ..++.. ++..++.|+.+     ..+.+||+.+.+.....
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  200 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT  200 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence            4566676643     35788998887654432222111  122222 55666666654     45888998765543221


Q ss_pred             ecCc--e-eeEEEECCCCCEEEEEeCC-----CeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCC----
Q 026765          147 KFGY--E-VNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD----  212 (233)
Q Consensus       147 ~~~~--~-~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d----  212 (233)
                      ....  . ...+.+  +++.++.|+.+     ..+.+||..+.+  .+..+.........+.+  ++++++.|+.+    
T Consensus       201 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~  276 (308)
T 1zgk_A          201 AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTF  276 (308)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCB
T ss_pred             CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcc
Confidence            1111  1 112222  56667776653     568888876542  22211111111112222  56777888754    


Q ss_pred             -CcEEEEecCCcE
Q 026765          213 -SLVSLWDISEML  224 (233)
Q Consensus       213 -g~v~iwd~~~~~  224 (233)
                       ..+.+||+.+.+
T Consensus       277 ~~~v~~yd~~~~~  289 (308)
T 1zgk_A          277 LDSVECYDPDTDT  289 (308)
T ss_dssp             CCEEEEEETTTTE
T ss_pred             cceEEEEcCCCCE
Confidence             357889888664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.80  E-value=0.54  Score=36.43  Aligned_cols=95  Identities=7%  Similarity=0.002  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCC-CCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeC-C---------CeEEEEECCC
Q 026765           31 TGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASG-D---------KTVRLWDARS   98 (233)
Q Consensus        31 ~~~~l~s~~~D-~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~-d---------~~i~iwd~~~   98 (233)
                      ++...+.|+.+ ..+.++|+............++. .......+.+   +..+++.|+. +         ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            56677777754 45666666431222221111121 1111222222   2456677765 2         4688899988


Q ss_pred             Ceeeeeeeec-CCe--eEEEECCCCCeEEEEcCC
Q 026765           99 GKCSQQAELS-GEN--INITYKPDGTHIAVGNRD  129 (233)
Q Consensus        99 ~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~d  129 (233)
                      .+........ ...  ..++. .+++.++.|+.+
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            7654432222 111  12222 466677777754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.72  E-value=0.92  Score=35.08  Aligned_cols=135  Identities=10%  Similarity=0.027  Sum_probs=62.0

Q ss_pred             CeEEEEECCCCeeeeeeeecCC--e-eEEEECCCCCeEEEEcC------CCcEEEEEc--CCCeeeeeeec--Cce-eeE
Q 026765           89 KTVRLWDARSGKCSQQAELSGE--N-INITYKPDGTHIAVGNR------DDELTILDV--RKFKPIHRRKF--GYE-VNE  154 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~--~~~-~~~  154 (233)
                      ..+.+||..+.+..........  . .+++.. +++.++.|+.      ...+..||+  .+.+.......  ... ...
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4788999988775543332211  1 222222 4555566653      234667776  43332221111  111 111


Q ss_pred             EEECCCCCEEEEEeCC----------------------CeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEee
Q 026765          155 IAWNMTGEMFFLTTGN----------------------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       155 ~~~~~~~~~~~~~~~~----------------------~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s  210 (233)
                      .+...+++.++.|+.+                      ..+.+||..+.  +.+..+......-.++  ..++++++.|+
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEee
Confidence            1222356666666532                      24677887543  3332222111111222  23677888888


Q ss_pred             CCC------cEEEEecCCcEEE
Q 026765          211 ADS------LVSLWDISEMLCV  226 (233)
Q Consensus       211 ~dg------~v~iwd~~~~~~i  226 (233)
                      .++      .|.++++++.+.+
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eCCCCCEeeeEEEEEEcCcEeE
Confidence            653      3555577766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.57  E-value=1.3  Score=34.60  Aligned_cols=153  Identities=9%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             eeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeE--EEecCcCcEEEEEEcCC---CCCEEEEEeC-
Q 026765           15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDI--ELRGHADSVDQLCWDPK---HADLIATASG-   87 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~---~~~~l~sg~~-   87 (233)
                      .+...-..-+.++|.|+|+ ++++ ..++.|++++.+......+...  ...........++++|+   ++.+.++-.. 
T Consensus        12 ~va~~l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~   90 (353)
T 2g8s_A           12 VLQDKLDHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV   90 (353)
T ss_dssp             EEEEEESSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred             EEECCCCCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence            3333344568999999999 5554 5578888887421100001000  01111235678999995   4555554332 


Q ss_pred             ------CCeEEEEECCCC--ee--eeee-e-ec------CCeeEEEECCCCCeEEEEcC-------------CCcEEEEE
Q 026765           88 ------DKTVRLWDARSG--KC--SQQA-E-LS------GENINITYKPDGTHIAVGNR-------------DDELTILD  136 (233)
Q Consensus        88 ------d~~i~iwd~~~~--~~--~~~~-~-~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d  136 (233)
                            ...|..|+....  ..  ...+ . ..      +....+.|.|||...++.+.             .++|.-++
T Consensus        91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence                  234555665432  11  1111 1 11      11345999999965555433             13565566


Q ss_pred             cCCCe------------eeeeeecC-ceeeEEEECC-CCCEEEEEe
Q 026765          137 VRKFK------------PIHRRKFG-YEVNEIAWNM-TGEMFFLTT  168 (233)
Q Consensus       137 ~~~~~------------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~  168 (233)
                      ....-            .......+ .....++|++ +++++++-.
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence            54210            01111122 2467889999 666655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.47  E-value=0.32  Score=37.85  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=66.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEE--CCCCCeEEEE--cCCCcEEEEEcCCCeeeeeeecCcee-
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAELS--GENINITY--KPDGTHIAVG--NRDDELTILDVRKFKPIHRRKFGYEV-  152 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~--~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~-  152 (233)
                      .+++.++.||.|.-.|..+|+..-.+...  .+.....-  .+.+..++.+  ..||.+..++..++...........+ 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            36778999999999999999876655543  12221110  0112233333  57999999998765433222221111 


Q ss_pred             -eEEEEC-----------CCCCEEEEEeCCCeEEEEecCCceeeeEEe
Q 026765          153 -NEIAWN-----------MTGEMFFLTTGNGTVEVLTYPSLRPLDTVV  188 (233)
Q Consensus       153 -~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  188 (233)
                       ..+...           ..+..+++++.+|.+..+|..+++.+..+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence             011111           145678889999999999999998887765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.42  E-value=1.2  Score=33.71  Aligned_cols=141  Identities=14%  Similarity=0.115  Sum_probs=72.2

Q ss_pred             CCEEEEEeC----C-----CeEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCC-----CcEEEEEcCCCee
Q 026765           79 ADLIATASG----D-----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRD-----DELTILDVRKFKP  142 (233)
Q Consensus        79 ~~~l~sg~~----d-----~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~  142 (233)
                      ..+++.|+.    +     ..+.+||..+.+...........  ..++. -+++.++.|+.+     ..+.+||+.+.+.
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            456667765    2     45788998887654332222111  12222 255666666643     3578899876554


Q ss_pred             eeeeecCc--e-eeEEEECCCCCEEEEEeCC-----CeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765          143 IHRRKFGY--E-VNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       143 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d  212 (233)
                      ........  . ...+.+  +++.++.|+.+     ..+.+||..+.+  .+..+........++.+  ++++++.|+.+
T Consensus       150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  225 (308)
T 1zgk_A          150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD  225 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence            32211111  1 111222  56666666543     457788876532  22111111111122333  56777888765


Q ss_pred             -----CcEEEEecCCcE
Q 026765          213 -----SLVSLWDISEML  224 (233)
Q Consensus       213 -----g~v~iwd~~~~~  224 (233)
                           ..+.+||+.+.+
T Consensus       226 ~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          226 GQDQLNSVERYDVETET  242 (308)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCCccceEEEEeCCCCc
Confidence                 458889987664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.42  E-value=1.4  Score=34.42  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             eeeEEEEC-------CCCCEEEEEeCCCeEEEEecCCc-eee--eEEe-eecCceeEEEECCCCCEEEEee
Q 026765          151 EVNEIAWN-------MTGEMFFLTTGNGTVEVLTYPSL-RPL--DTVV-AHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       151 ~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~~~-~~~~~v~~i~~~p~~~~las~s  210 (233)
                      ....+.+.       .+|++++..-..+.|..+++... +..  ..+. +....+..+++.|+|.++++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            35566663       46777777777788888887642 221  1222 2235688999999998776654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.17  E-value=1.4  Score=33.57  Aligned_cols=162  Identities=10%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             CcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-------------CeEEEE
Q 026765           29 NCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-------------KTVRLW   94 (233)
Q Consensus        29 ~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-------------~~i~iw   94 (233)
                      ++++.++.-.. .|+. +||.+...+....   ++..  +.+  --+++.+..+..+...+             ..|+..
T Consensus        22 ~~~g~~iy~~n~~d~~-~ly~~~~dg~~~~---~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i   93 (302)
T 3s25_A           22 CESDGEVFFSNTNDNG-RLYAMNIDGSNIH---KLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI   93 (302)
T ss_dssp             EEETTEEEEEEGGGTT-EEEEEETTSCSCE---EEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred             EEeCCEEEEEeCCCCc-eEEEEcCCCCCCE---EccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence            35677665543 3332 5666654333221   1211  112  23466665555555443             356667


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc--CC--CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-
Q 026765           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGN--RD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-  169 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (233)
                      ++..++....  ....  ...+++++++|+-..  .+  ..|...++...+.......  .+  ..++++++.+.-.+. 
T Consensus        94 ~~dg~~~~~l--~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g  165 (302)
T 3s25_A           94 KRNGHGSTVL--DPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPK  165 (302)
T ss_dssp             ETTSCCCEEE--ECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTT
T ss_pred             eCCCCcceEe--ecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCC
Confidence            7766542221  1122  235677888887554  33  3455555543322211111  11  234567777776654 


Q ss_pred             CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee
Q 026765          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s  210 (233)
                      ...|...++...... .+.  ..... ..+.|++.+|+-..
T Consensus       166 ~~~Iy~~~l~g~~~~-~l~--~~~~~-~~~~P~g~~iy~t~  202 (302)
T 3s25_A          166 NGQLYRYDTASQSEA-LFY--DCNCY-KPVVLDDTNVYYMD  202 (302)
T ss_dssp             TCCEEEEETTTTEEE-EEE--CSCEE-EEEEEETTEEEEEE
T ss_pred             CceEEEEECCCCCEE-EEe--CCCcc-ceeeecCCEEEEEE
Confidence            667777776554332 221  12222 23557777766444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.91  E-value=2.1  Score=34.68  Aligned_cols=111  Identities=11%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEec------CcCcEEEEEEcCC---CCCEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRG------HADSVDQLCWDPK---HADLIA   83 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~------h~~~v~~~~~~~~---~~~~l~   83 (233)
                      ..+..--..-+.++|.|+|.++++-...+.|++++...   ..... ..+..      .......++|+|+   ++.+.+
T Consensus        20 ~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            34443345667999999999888765445677765422   12111 12211      2345678999995   555555


Q ss_pred             EEeC------------CCeEEEEECCCC--ee---eeeee-e----cCCeeEEEECCCCCeEEEEc
Q 026765           84 TASG------------DKTVRLWDARSG--KC---SQQAE-L----SGENINITYKPDGTHIAVGN  127 (233)
Q Consensus        84 sg~~------------d~~i~iwd~~~~--~~---~~~~~-~----~~~~~~~~~~~~~~~l~~~~  127 (233)
                      +-+.            ...|.-++....  +.   ...+. .    .+..-.++|.|||...++.+
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            4432            124544554321  11   11111 1    12245699999998766544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.77  E-value=1.4  Score=32.11  Aligned_cols=138  Identities=13%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-----eeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-----QAELS---GENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      ..+.+++|+|++ .+.+ . .++.+.-.+..+.....     .....   ..-..+.|.|+|.+.++  .|+.|.-++..
T Consensus        41 ~~~~~laf~P~G-~LYa-V-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGG-ELYG-V-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTS-CEEE-E-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCc-cEEE-E-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            477899999954 4444 3 66765555543321110     11000   01246889999988877  56877666542


Q ss_pred             CCe---eeee-eecC----ceeeEEEECCCCCEEEEEeCCCeEEEEecCCce-----eeeEEeeec--CceeEEEECCCC
Q 026765          139 KFK---PIHR-RKFG----YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-----PLDTVVAHT--AGCYCIAIDPMG  203 (233)
Q Consensus       139 ~~~---~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~--~~v~~i~~~p~~  203 (233)
                      +..   .+.. .+.+    ..+..+.+.|+|.+.++.  ++.+.-...+...     ...+..++.  ..-..+.|.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            211   0000 0110    256889999999988888  6665433222111     011222211  123346688988


Q ss_pred             CEEEEeeCCC
Q 026765          204 RYFAVGSADS  213 (233)
Q Consensus       204 ~~las~s~dg  213 (233)
                      .+++..  +|
T Consensus       194 ~l~~v~--~g  201 (236)
T 1tl2_A          194 TLFGVQ--GG  201 (236)
T ss_dssp             CEEEEE--TT
T ss_pred             cEEEEe--CC
Confidence            877766  66

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.72  E-value=0.37  Score=37.48  Aligned_cols=110  Identities=12%  Similarity=0.047  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEE--CCCCCEEEEE--eCCCeEEEEecCCceeeeEEee----e
Q 026765          121 THIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAW--NMTGEMFFLT--TGNGTVEVLTYPSLRPLDTVVA----H  190 (233)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~----~  190 (233)
                      ..+++++.||.+.-+|..+++.....+..  .++....-  .+.+..+++.  ..||.+..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            36778889999999998888877766554  11111100  0112234433  5799999998877644322221    1


Q ss_pred             cCceeE----EEECC----CCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          191 TAGCYC----IAIDP----MGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       191 ~~~v~~----i~~~p----~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..++..    +-..+    .+..+.+|+.+|.+.-.|+.+|+.+.+|.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            111111    00001    35678899999999999999999998875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.65  E-value=1.7  Score=32.86  Aligned_cols=144  Identities=10%  Similarity=0.089  Sum_probs=71.5

Q ss_pred             CCCEEEEEeC-----C------CeEEEEECCCCeeeeeeeecCCee--EEEECCCCCeEEEEcCC--------CcEEEEE
Q 026765           78 HADLIATASG-----D------KTVRLWDARSGKCSQQAELSGENI--NITYKPDGTHIAVGNRD--------DELTILD  136 (233)
Q Consensus        78 ~~~~l~sg~~-----d------~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d--------~~i~i~d  136 (233)
                      +..+++.|+.     .      ..+.+||..+.+............  .++.. ++..++.|+.+        ..+.+||
T Consensus        45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d  123 (315)
T 4asc_A           45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYD  123 (315)
T ss_dssp             TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred             CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEEC
Confidence            3467777773     1      126788988876543222221111  12222 55566666632        3588899


Q ss_pred             cCCCeeeeeeecCce-eeEEEECCCCCEEEEEeC------CCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEE
Q 026765          137 VRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFA  207 (233)
Q Consensus       137 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~la  207 (233)
                      +.+.+.........+ ....+...+++.++.|+.      -..+.+||..+.+  .+..+......-.++.+  ++++++
T Consensus       124 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv  201 (315)
T 4asc_A          124 RLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIV  201 (315)
T ss_dssp             TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEE
Confidence            876543322111111 111112235666677665      2467888876532  22211111111112223  567777


Q ss_pred             EeeCCC-----cEEEEecCCcE
Q 026765          208 VGSADS-----LVSLWDISEML  224 (233)
Q Consensus       208 s~s~dg-----~v~iwd~~~~~  224 (233)
                      .|+.++     .+.+||+.+.+
T Consensus       202 ~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          202 AAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEECSSSEEEEEEEEETTTTE
T ss_pred             EeccCCCCccceEEEEECCCCe
Confidence            777654     47888887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.38  E-value=4.7  Score=36.95  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=75.7

Q ss_pred             EEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeeeecCceeeEEEECCC------
Q 026765           91 VRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMT------  160 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~------  160 (233)
                      |++.+...+.....+....  .+...+..  +..++.+. ++.+.++.+...+  .........++.++++.+.      
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~  570 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL  570 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence            4555554433444444332  23333433  34666554 5677777775433  2233445678899988754      


Q ss_pred             CCEEEEEeC-CCeEEEEecCCceeeeEEeee-cCceeEEEEC--CCCCEEEEeeCCCcEEEEecC
Q 026765          161 GEMFFLTTG-NGTVEVLTYPSLRPLDTVVAH-TAGCYCIAID--PMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       161 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~v~~i~~~--p~~~~las~s~dg~v~iwd~~  221 (233)
                      ++++++|.. |++++++.+++.+.+....-. ...+.++.+.  ....+|..|-.||.+.-+.++
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            468899986 999999999877665443321 1233344332  234578899999998666554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.79  E-value=2.8  Score=32.71  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=81.8

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeE-EE----ecCcCcEEEEEEcCC---CCCEEEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-EL----RGHADSVDQLCWDPK---HADLIATA   85 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~-~~----~~h~~~v~~~~~~~~---~~~~l~sg   85 (233)
                      ..+..--..-+.++|.|+|.++++--..|.|++++...   .....+ .+    ..-......++++|+   ++.+.++-
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~---g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT---GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCC---CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            34444556678999999999888876688888876432   111111 11    112346788999985   34444432


Q ss_pred             --eCCCeEEEEECCCC-----ee---eeeee-e----cCCeeEEEECCCCCeEEEEcC-------------CCcEEEEEc
Q 026765           86 --SGDKTVRLWDARSG-----KC---SQQAE-L----SGENINITYKPDGTHIAVGNR-------------DDELTILDV  137 (233)
Q Consensus        86 --~~d~~i~iwd~~~~-----~~---~~~~~-~----~~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~  137 (233)
                        ..+..|.-|....+     +.   ...+. .    .+....+.|.|||...++.+.             .++|.-++.
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence              23455555655431     11   11111 1    112235999999987666442             244444444


Q ss_pred             CCC----ee---eeeeecC-ceeeEEEECCCCCEEEEEe
Q 026765          138 RKF----KP---IHRRKFG-YEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus       138 ~~~----~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (233)
                      ...    ++   ......+ .....++|+++|+++++-.
T Consensus       182 dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred             CCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence            321    00   0111112 2356789999887776654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.87  E-value=1.5  Score=36.68  Aligned_cols=100  Identities=11%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCC------ee-------eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765           70 DQLCWDPKHADLIATASGDKTVRLWDARSG------KC-------SQQAELSGENINITYKPDGTHIAVGNRDDELTILD  136 (233)
Q Consensus        70 ~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d  136 (233)
                      ..+..+|++..++++|--+.++.++|++.-      +.       ..+.++...+.-.+|.++|.-..+-.-|..+.-|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            456788998878888888999999998631      11       22233344556789999995555666899999999


Q ss_pred             cCCC----------eeeeeeecCceeeEEEE------CCCCCEEEEEeC
Q 026765          137 VRKF----------KPIHRRKFGYEVNEIAW------NMTGEMFFLTTG  169 (233)
Q Consensus       137 ~~~~----------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  169 (233)
                      +...          ..+........+..+.-      .++|+++++...
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            8542          23333444444544433      567888777653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.28  E-value=0.37  Score=43.03  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=33.6

Q ss_pred             ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       193 ~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+.+++..++..++.+-+.|+++||||+.++.|+.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45677888888999999999999999999999998864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.17  E-value=1.6  Score=39.81  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +.+++..++..++.+-+.|+++||||+.++.|+.++.
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            4556667788899999999999999999999999865

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.06  E-value=6.9  Score=33.61  Aligned_cols=192  Identities=11%  Similarity=0.088  Sum_probs=97.5

Q ss_pred             cCCCEEEEEeCC----CCEEEEecccCCCCceeeE-E-----EecCcCcEEEEEEcCCCCCEEEEEeCCC------eEEE
Q 026765           30 CTGTKLASGSVD----QTARVWHIEPHGHGKVKDI-E-----LRGHADSVDQLCWDPKHADLIATASGDK------TVRL   93 (233)
Q Consensus        30 ~~~~~l~s~~~D----~~v~vW~~~~~~~~~~~~~-~-----~~~h~~~v~~~~~~~~~~~~l~sg~~d~------~i~i   93 (233)
                      .++..++.||.+    ..+.+||+...  .+.... .     .+.-......+.+.. ++.+++.||.++      .+.+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~--~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYD--KIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSS--CEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCC--eEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence            456777888764    35666666432  221111 0     111111222233321 345777776543      4788


Q ss_pred             EECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCCC--cEEEEEcCCCeeeeeee---c--C-ceeeEEEECCC-CC
Q 026765           94 WDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRK---F--G-YEVNEIAWNMT-GE  162 (233)
Q Consensus        94 wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~---~--~-~~~~~~~~~~~-~~  162 (233)
                      ||..+.+..........  ..+++...++..++.|+.++  .+.+||+.+.+......   .  . .....+.+... ++
T Consensus       473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            99888765443222211  12234434777888887654  68899987765433221   1  1 11222444444 56


Q ss_pred             EEEEEeC--C-----CeEEEEecCCcee-----eeEEeee--cCce-eEEEECCCCCEEEEeeCC--------CcEEEEe
Q 026765          163 MFFLTTG--N-----GTVEVLTYPSLRP-----LDTVVAH--TAGC-YCIAIDPMGRYFAVGSAD--------SLVSLWD  219 (233)
Q Consensus       163 ~~~~~~~--~-----~~v~~~~~~~~~~-----~~~~~~~--~~~v-~~i~~~p~~~~las~s~d--------g~v~iwd  219 (233)
                      .++.|+.  +     +.+.+||..+.+-     -..+...  .... .++....++++++.|+.+        ..|.+||
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            6677654  2     4678888765541     1111111  1111 122222336777888743        4588999


Q ss_pred             cCCcE
Q 026765          220 ISEML  224 (233)
Q Consensus       220 ~~~~~  224 (233)
                      +.+.+
T Consensus       633 ~~t~~  637 (695)
T 2zwa_A          633 PLSET  637 (695)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            88764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.02  E-value=5.4  Score=32.35  Aligned_cols=191  Identities=15%  Similarity=0.213  Sum_probs=108.2

Q ss_pred             EECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeee
Q 026765           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQA  105 (233)
Q Consensus        27 ~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~  105 (233)
                      -.+|..+.+|--. ..++.|+|++..  .+.+...   ....|..-.|-..  +.|+- =.+..|.-|++... .+...+
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K--~klks~~---~~e~VvfWkWis~--~~l~l-VT~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHT---MTDDVTFWKWISL--NTVAL-VTDNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEE---CSSCCCEEEEEET--TEEEE-ECSSEEEEEESSSSCCCEEEE
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHh--hhhccee---cCCCceEEEecCC--CeEEE-EcCCeeEEecccCCCCchhhe
Confidence            3456666666655 789999999752  2222222   2345666667533  23322 24578999999643 222333


Q ss_pred             ee-----cCCeeEEEECCCCCeEEEEcC-------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCC-----CEEEEEe
Q 026765          106 EL-----SGENINITYKPDGTHIAVGNR-------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-----EMFFLTT  168 (233)
Q Consensus       106 ~~-----~~~~~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  168 (233)
                      ..     ...+++-..+++.+|++..+-       .|.+.+|..+...  .+.-.++......+..+|     +.++.+.
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence            22     123456677899999875442       2567778765432  122222222222332222     2333343


Q ss_pred             C---CCeEEEEecCCc----eeeeE--Ee------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          169 G---NGTVEVLTYPSL----RPLDT--VV------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       169 ~---~~~v~~~~~~~~----~~~~~--~~------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      .   .+.+++.+....    .++..  ..      .-..-..++..|+.-..+..-+.-|.|.+||+.++.|+..
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            3   378888876322    11110  00      1122345788888888888889999999999999998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.85  E-value=5.8  Score=34.07  Aligned_cols=146  Identities=10%  Similarity=0.096  Sum_probs=77.8

Q ss_pred             CCEEEEEeCC----CeEEEEECCCCeeeeee-e-----ecCC--eeEEEECC-CCCeEEEEcCCC------cEEEEEcCC
Q 026765           79 ADLIATASGD----KTVRLWDARSGKCSQQA-E-----LSGE--NINITYKP-DGTHIAVGNRDD------ELTILDVRK  139 (233)
Q Consensus        79 ~~~l~sg~~d----~~i~iwd~~~~~~~~~~-~-----~~~~--~~~~~~~~-~~~~l~~~~~d~------~i~i~d~~~  139 (233)
                      ..+++.||.+    ..+.+||..+.+..... .     ....  ..+++..+ ++..++.|+.++      .+.+||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            4677777754    45788998877654433 1     1111  11233333 666777777542      477889877


Q ss_pred             CeeeeeeecCc--eeeEEEECCCCCEEEEEeCCC--eEEEEecCCce--eeeE---EeeecCceeEEEECCC-CCEEEEe
Q 026765          140 FKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNG--TVEVLTYPSLR--PLDT---VVAHTAGCYCIAIDPM-GRYFAVG  209 (233)
Q Consensus       140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~--~~~~---~~~~~~~v~~i~~~p~-~~~las~  209 (233)
                      .+.........  .-..+..-.+++.++.|+.++  .+.+||..+.+  .+..   +........++.++.+ ++.++.|
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G  557 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG  557 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred             CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence            54332211111  111222213777888876544  68888876542  1111   0000111123555555 6677778


Q ss_pred             eC--C-----CcEEEEecCCcE
Q 026765          210 SA--D-----SLVSLWDISEML  224 (233)
Q Consensus       210 s~--d-----g~v~iwd~~~~~  224 (233)
                      +.  +     ..+.+||+.+..
T Consensus       558 G~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          558 GGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CBCTTSSCBCCEEEEEEECTTC
T ss_pred             CcCCCCCeeeCcEEEEEccCCc
Confidence            76  2     358888987765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.85  E-value=6.9  Score=31.68  Aligned_cols=100  Identities=10%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCeeeeeeee---------cCCeeEEEECCC---CCeEEEEcC-----
Q 026765           67 DSVDQLCWDPKHADLIATASGD-KTVRLWDARSGKCSQQAEL---------SGENINITYKPD---GTHIAVGNR-----  128 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d-~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~l~~~~~-----  128 (233)
                      .....++|.|++ .++++ ... +.|.+++..+++......+         .+....++++|+   +.+|.+...     
T Consensus        27 ~~P~~~a~~pdG-~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTS-CEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCC-cEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            455689999986 56655 455 4788887655543222211         122347999995   555544332     


Q ss_pred             --------CCcEEEEEcCCC-------eeeee-ee--cCceeeEEEECCCCCEEEEEe
Q 026765          129 --------DDELTILDVRKF-------KPIHR-RK--FGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus       129 --------d~~i~i~d~~~~-------~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~  168 (233)
                              ...|.-+++...       +.+.. ..  ..+....+.|.++|.++++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                    123444544221       11111 11  124567899999998777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.86  E-value=6.2  Score=29.80  Aligned_cols=143  Identities=12%  Similarity=0.083  Sum_probs=69.3

Q ss_pred             CCCEEEEEeC----CC-------eEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCC-------CcEEEEEc
Q 026765           78 HADLIATASG----DK-------TVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRD-------DELTILDV  137 (233)
Q Consensus        78 ~~~~l~sg~~----d~-------~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-------~~i~i~d~  137 (233)
                      +..+++.|+.    ++       .+.+||..+.+...........  ..++.. ++..++.|+.+       ..+.+||+
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeC
Confidence            3567777773    11       2778898877654332222111  122222 55566666653       24778888


Q ss_pred             CCCeeeeeeecCce-eeEEEECCCCCEEEEEeC------CCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEE
Q 026765          138 RKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       138 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las  208 (233)
                      .+.+.........+ ........+++.++.|+.      ...+.+||..+.+  .+..+........++.+  ++++++.
T Consensus       135 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  212 (318)
T 2woz_A          135 VAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIA  212 (318)
T ss_dssp             TTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEE
Confidence            76554332221111 111111246666666653      2458888876543  22111110111112222  5677777


Q ss_pred             eeCC-----CcEEEEecCCc
Q 026765          209 GSAD-----SLVSLWDISEM  223 (233)
Q Consensus       209 ~s~d-----g~v~iwd~~~~  223 (233)
                      |+.+     ..+.+||+.+.
T Consensus       213 GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          213 GGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEETTEEEEEEEEEETTTC
T ss_pred             cCcCCCCccceEEEEECCCC
Confidence            7654     24678887765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.83  E-value=9.5  Score=29.68  Aligned_cols=141  Identities=19%  Similarity=0.215  Sum_probs=76.6

Q ss_pred             cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee-------cCCeeEEEECCC---CCeEEEE---cCCCcE
Q 026765           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-------SGENINITYKPD---GTHIAVG---NRDDEL  132 (233)
Q Consensus        66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~l~~~---~~d~~i  132 (233)
                      -..-..++|.|++ .++++--..|.|++++...++.......       ......++++|+   +.+|.+.   ..+..|
T Consensus        31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            3456789999986 5665544489999998665543221111       233467999995   3444432   234455


Q ss_pred             EEEEcCCC----------eeee-eee--cCceeeEEEECCCCCEEEEEeC-------------CCeEEEEecCCc----e
Q 026765          133 TILDVRKF----------KPIH-RRK--FGYEVNEIAWNMTGEMFFLTTG-------------NGTVEVLTYPSL----R  182 (233)
Q Consensus       133 ~i~d~~~~----------~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~----~  182 (233)
                      .-|.+...          +.+. ...  ..+....+.|.++|.++++.+.             .|.|.-++.+..    .
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            55554331          1111 111  1234556999999987766442             355555554321    0


Q ss_pred             ee---eEEe-eecCceeEEEECCCCCEEEE
Q 026765          183 PL---DTVV-AHTAGCYCIAIDPMGRYFAV  208 (233)
Q Consensus       183 ~~---~~~~-~~~~~v~~i~~~p~~~~las  208 (233)
                      ++   ..+. +|. ....++|+|+|+++++
T Consensus       190 Pf~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          190 PFPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             CCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence            10   1111 332 3467999998776654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=85.98  E-value=1.7  Score=37.41  Aligned_cols=35  Identities=17%  Similarity=0.525  Sum_probs=28.8

Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      |.++.+  +..++++-+.|.++|+||++++.++.+..
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            444444  46899999999999999999999998764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=84.49  E-value=11  Score=28.49  Aligned_cols=140  Identities=11%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             EEECcCCCEEEEEe--CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           26 VAWNCTGTKLASGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        26 ~~~~~~~~~l~s~~--~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      ..|++++++|+=..  .++.-.||.+...+... .  .+..+..    ..+++.+..+..+.....+|.+-++..+....
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~--~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~  181 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-K--KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL  181 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-E--EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-E--EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence            36778888887665  46666777766443322 1  2333322    34566666666565546778888887665433


Q ss_pred             eeeecCCeeEEEECCCCCeEEEEcCC--CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe--CCCeEEEEecC
Q 026765          104 QAELSGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYP  179 (233)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~  179 (233)
                      .  ..+.. ...+.|++.+|+-....  ..|...++........  ....+  -.++|+++.+....  ..+.+...+++
T Consensus       182 l--~~~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          182 F--YDCNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL--TEANI--EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             E--ECSCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC--SCSCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             E--eCCCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE--eCCCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence            2  22222 23456888887755433  3566666654332211  11122  23677788877653  23566666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=84.40  E-value=10  Score=35.67  Aligned_cols=130  Identities=12%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      .+|.|-|+..+..+......  .-+...+|..+.++.=. ...+.|+|+++...+....+..++.-..|- +.+.+. -.
T Consensus        48 ~~vvIidl~~~~~~~rrpi~--AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi-s~~~l~-lV  122 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVA-LV  122 (1630)
T ss_pred             ceEEEEECCCCCCccccccc--chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec-CCCeeE-EE
Confidence            36777777765432211111  11244578877776654 678999999887777666665566665663 233333 34


Q ss_pred             CCCeEEEEecC-CceeeeEEeee----cCceeEEEECCCCCEEEEee-------CCCcEEEEecCCc
Q 026765          169 GNGTVEVLTYP-SLRPLDTVVAH----TAGCYCIAIDPMGRYFAVGS-------ADSLVSLWDISEM  223 (233)
Q Consensus       169 ~~~~v~~~~~~-~~~~~~~~~~~----~~~v~~i~~~p~~~~las~s-------~dg~v~iwd~~~~  223 (233)
                      .+..|.-|+.. +..|.+.+.-|    ...|..-..+++.++++..+       -.|.+.+|..+.+
T Consensus       123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence            45578889875 34555555444    34566667788888876433       3477888887754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.30  E-value=19  Score=29.29  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=57.2

Q ss_pred             CCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCC---eeeeeee--c--------CceeeEEEECCC----CCEEEEEeCC
Q 026765          109 GENINITYKPDGT-HIAVGNRDDELTILDVRKF---KPIHRRK--F--------GYEVNEIAWNMT----GEMFFLTTGN  170 (233)
Q Consensus       109 ~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~--~--------~~~~~~~~~~~~----~~~~~~~~~~  170 (233)
                      ...+.++|.|++. .++++...|.|++++....   ..+..+.  .        ......++++|+    +.++++-+..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3467899999996 5666777899999975321   1111111  0        124567899986    4444443321


Q ss_pred             ------------CeEEEEecCC----------ceeeeEEee--ecCceeEEEECCCCCEEEEeeCC
Q 026765          171 ------------GTVEVLTYPS----------LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSAD  212 (233)
Q Consensus       171 ------------~~v~~~~~~~----------~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~d  212 (233)
                                  ..|.-|.+..          .+.+..+..  .......|+|.|||.++++-+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence                        1333344421          122333221  11234689999999876665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	4e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 1e-18
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 4/151 (2%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
                   L  + + D + +LWD R G C Q       +IN I + P+G   A G+ D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 132 LTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
             + D+R  + +           +  ++++ +G +      +    V           + 
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
            H     C+ +   G   A GS DS + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 6e-12
 Identities = 32/214 (14%), Positives = 58/214 (27%), Gaps = 4/214 (1%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R   GH  K++++ W      L S S D    +   + +   KV  I LR          
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGK--LIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
               +       +      L          +            +    +  V +  D   
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166

Query: 134 ILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191
            L   +             +V  ++      +F     + + ++          T   H 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225
           +    I   P G  FA GS D+   L+D+     
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 6e-11
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            +  +      + SV+++ +G  L +G  D    VW          +   L GH + V  
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL----KADRAGVLAGHDNRVSC 317

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           L         +AT S D  +++W+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.3 bits (134), Expect = 4e-10
 Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 6/223 (2%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                      V + A+  +G  +A G +D    +++++          EL GH   +  
Sbjct: 89  KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC 148

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-GTHIAVGNRDD 130
             +   +  + ++  GD T  LWD  +G+ +        ++              G  D 
Sbjct: 149 CRFLDDNQIVTSS--GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206

Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEV--LTYPSLRPLDTV 187
              + DVR+            ++N I +   G  F   + + T  +  L         + 
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
                G   ++    GR    G  D   ++WD  +        
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 11/58 (18%), Positives = 19/58 (32%)

Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           ++ +    +R   T+  H A  Y +      R     S D  + +WD      V    
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 7e-18
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R   GH   V SV+    G  + S S D+T ++W ++     K       GH + V  
Sbjct: 93  CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT----FTGHREWVRM 148

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQ---------------------AELSGE 110
           +  +     LIA+ S D+TVR+W   + +C  +                        +  
Sbjct: 149 VRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
           +        G  +  G+RD  + + DV     +         V  + ++  G+       
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267

Query: 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           + T+ V  Y + R + T+ AH      +       Y   GS D  V +W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 1e-16
 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 25/235 (10%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +GH+  V  V ++   + + S S D T +VW  E     +     L+GH DSV  + +D 
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFDH 69

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
               L + ++                          +++  P+G HI   +RD  + + +
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 137 VRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY 195
           V+    +         V  +  N  G +    + + TV V    +      +  H     
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 196 CIA--------------------IDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           CI+                        G +   GS D  + +WD+S  +C+ T  
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (175), Expect = 2e-15
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 3/171 (1%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           L GH   V ++ + P    ++ +AS D T+++WD  +G   +  +   +++         
Sbjct: 13  LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM--TGEMFFLTTGNGTVEVLTYP 179
            +      D    L   +     R   G++ N  + ++   G+     + + T+++    
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           +   + T   H      +  +  G   A  S D  V +W ++   C     
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 8e-12
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            I +    S           +      G  L SGS D+T ++W +     G      L G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---TGMCLM-TLVG 245

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHI 123
           H + V  + +       I + + DKT+R+WD ++ +C +        +  + +     ++
Sbjct: 246 HDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 124 AVGNRDDELTILD 136
             G+ D  + + +
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           P       +  H +    +   P+       S D+ + +WD       RT  
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 5e-16
 Identities = 47/279 (16%), Positives = 86/279 (30%), Gaps = 64/279 (22%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-- 66
           +NL++         + SV ++  G  LA+G+ D+  R+W IE      +     +     
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 67  -----------------------------------DSVDQLCWDPKHADLIATASGDKTV 91
                                              D V  +   P     IA  S D+ V
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 92  RLWDARSGKCSQQAELSGENIN--------ITYKPDGTHIAVGNRDDELTILDVRKFKPI 143
           R+WD+ +G   ++ +   E+          + +  DG  +  G+ D  + + +++     
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 144 HRRKFGYE-------------VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
              K                 V  +A     E     + +  V      S  PL  +  H
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349

Query: 191 TAGCYCIAI------DPMGRYFAVGSADSLVSLWDISEM 223
                 +A+       P    FA GS D    +W   ++
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 4e-10
 Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 23/234 (9%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH--------------GHGKVKDIELR 63
            H   V  V ++  G  LA+G  ++T +V+ +                     +      
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
                +  +C+ P    L   A                        +  ++ Y P G  +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 124 AVGNRDDELTILDV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
             G+ D  + I D+      +                 G+     + +  V V    +  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 183 -------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
                    ++   H    Y +     G+    GS D  V LW++         
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 5e-10
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7   PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
           P        Y GHK  V SVA       + SGS D+    W  +    G      L+GH 
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---SGNPLL-MLQGHR 350

Query: 67  DSVDQLCWDPKHA-----DLIATASGDKTVRLWDAR 97
           +SV  +      +     ++ AT SGD   R+W  +
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
           L   + HT+   C+     G Y A G  +    ++ +S+   V   +
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS 100

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-12
 Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH 65
           +         +               G ++ SG+ D   +VW  E           L+GH
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT----LQGH 176

Query: 66  ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV 125
            + V  L +D  H   + + S D ++R+WD  +G C        +++    +     +  
Sbjct: 177 TNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKDNILVS 232

Query: 126 GNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
           GN D  + I D++  + +   +     +               ++ +GTV++    +   
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

Query: 184 LDTVVA-----HTAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISE 222
           +  +V           + I         AVGS +    + + + D   
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 39/219 (17%), Positives = 61/219 (27%), Gaps = 12/219 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             +   GH   V +      G ++ SGS D T +VW        +     L GH   V  
Sbjct: 8   SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT----LVGHTGGVWS 62

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
                                L    +        L G    +          V    D 
Sbjct: 63  SQMRDNIIISG-----STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191
              +   +         G+          G        +  V+V    +   L T+  HT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
              Y +  D  G +   GS D+ + +WD+    C+ T T
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLT 214

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 3/162 (1%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                    + + + D  V++WD  +  C    +    N   + + DG H+  G+ D  +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSI 199

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
            + DV     IH    G++       +   +      + TV++    + + L T+     
Sbjct: 200 RVWDVETGNCIHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258

Query: 193 -GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
                  +     +    S D  V LWD+     +R    LE
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE-PHGHGKVKDIELR 63
            I            +K +            + + S D T ++W ++       +  +E  
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 64  GHADSVDQLCWDPKHADLIATASGDKT----VRLWD 95
           G    V ++        + A  S + T    + + D
Sbjct: 303 GSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 337

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.2 bits (149), Expect = 5e-12
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
          ++   + +   AWN   T++A    +    ++    +   +V   EL+ H   V  + W 
Sbjct: 3  HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH--ELKEHNGQVTGVDWA 60

Query: 76 PKHADLIATASGDKTVRLWD 95
          P   + I T   D+   +W 
Sbjct: 61 PDS-NRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.6 bits (119), Expect = 5e-08
 Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 11/167 (6%)

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGT 121
             + +    W+      IA    +  V +++    K  Q  EL   N  +T   + PD  
Sbjct: 6   LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
            I     D    +  ++                                    V++    
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 182 -------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                            +    +   P     A GS D    ++   
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 24/245 (9%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           K +   E   H  +V  V W     ++ +   D+ A VW ++     K   + LR +  +
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVILRINRAA 98

Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128
                   +    + + S   ++  ++  +     +         +       +  +   
Sbjct: 99  RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158

Query: 129 DDE---LTILDVRKFKPIHRRKFGY-------------------EVNEIAWNMTGEMFFL 166
                   I      +   R                         V+ + ++  G     
Sbjct: 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218

Query: 167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226
            + + TV +        + T+ + T     +         A G     V L+        
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGK 277

Query: 227 RTFTK 231
            +F  
Sbjct: 278 LSFGG 282

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 15  EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
            + G        +      +    ++D+ A        G           H +SV Q+  
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-----GSAAAGAGLDSLHKNSVSQISV 333

Query: 75  DPKHAD---LIATASGDKTVRLWDARSGK 100
                       T   D  + +WD RS +
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 9/195 (4%)

Query: 35  LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
                V++                  E       V  +C+       +A  S D TV L 
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLA 228

Query: 95  DARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDE-LTILDVRKFKPIHRRKFGYEV 152
           DA            +   + +T+  + + +A G+     L   D    K     +     
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 288

Query: 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAV 208
                 +T    F           +  +   LD+   H      I++   G+     F  
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCT 346

Query: 209 GSADSLVSLWDISEM 223
              D  +S+WD+  +
Sbjct: 347 TGMDGGMSIWDVRSL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 18/216 (8%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--------HADSV 69
            H   + SV+     +   S S D   +VW  +   +   KD             H D +
Sbjct: 12  AHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 70  DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             +  D     L+AT S    +  +       +++      ++  +     +  A+    
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
               +         HR                     +         T      +++ + 
Sbjct: 130 SNDRL-------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225
            +     + I   G   A G  +  V + ++S +  
Sbjct: 183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRP 217

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 32/283 (11%), Positives = 73/283 (25%), Gaps = 60/283 (21%)

Query: 7   PFKNLHSREYTGHKKKVHSVAW-------NCTGTKLASGSVDQTARVWHIE------PHG 53
                 S  +  HK  +H V               +A+ S       + I          
Sbjct: 47  ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106

Query: 54  HGKVKDIELRGHADSVDQLCWDPKH----ADLIATASGDKTVRLWDARS----------- 98
             K+  ++      S   L W   +    +  +       T  +W               
Sbjct: 107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166

Query: 99  --------GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150
                   G        S    ++     G  IA G  +  + I ++   +P++  +  +
Sbjct: 167 WSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQH 225

Query: 151 E-------VNEIAWNMTGEMFFLTTGNGTVEVLTY----------------PSLRPLDTV 187
                   +  + ++  G +  +   + +   +T                  S +     
Sbjct: 226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 285

Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
            AH++    ++ +  G        D  +  WD+     + T  
Sbjct: 286 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 32/266 (12%), Positives = 68/266 (25%), Gaps = 49/266 (18%)

Query: 4   SSIPFKNLHSREYTGHKKKVHSVAWNCTG-----TKLASGSVDQTARVW----------- 47
             + F+ L   +    K    ++ W  +       +L +  V  T  +W           
Sbjct: 103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162

Query: 48  ---HIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104
              +  P    +         +     +    +   LIAT   + TV++ +  + +    
Sbjct: 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYN 220

Query: 105 AEL------------------------SGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
            E                            + N            G R   L++      
Sbjct: 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 280

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG----CYC 196
             +        V  +++N +GE       +G +      +   + T+  H          
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

Query: 197 IAIDPMGRYFAVGSADSLVSLWDISE 222
           +A+D  G   A      +  L     
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWR 366

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 2e-10
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                    I +ASGD+T+++W+  + +  +        I    +     +  G+ D+ +
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQYRDRLVVSGSSDNTI 200

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---------LTYPSLRP 183
            + D+     +   + G+E          +       +G ++V                 
Sbjct: 201 RLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           L T+V H+   + +  D         S D  + +WD
Sbjct: 260 LRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 37/216 (17%), Positives = 77/216 (35%), Gaps = 14/216 (6%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +   K V+ + ++    K+ SG  D T ++W        ++    L GH  SV  L +D 
Sbjct: 12  SETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTGSVLCLQYDE 65

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
           +     ++ S  +   +              +  ++        T     +    + + D
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS----IAVWD 121

Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGC 194
           +     I  R+           +  +  ++ +  G+ T++V    +   + T+  H  G 
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
            C+      R    GS+D+ + LWDI    C+R   
Sbjct: 182 ACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLE 215

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHA 66
            +        +           ++ SG+ D   +VW +      +          L  H+
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 67  DSVDQLCWDPKHADLIATASGDKTVRLWD 95
             V +L +D      I ++S D T+ +WD
Sbjct: 268 GRVFRLQFDEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 16  YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
            T +  K            + SGS D T R+W IE           LR      + +   
Sbjct: 172 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-------LRVLEGHEELVRCI 224

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQ-------AELSGENINITY-KPDGTHIAVGN 127
                 I + + D  +++WD  +    +          L   +  +   + D   I   +
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284

Query: 128 RDDELTILD 136
            DD + I D
Sbjct: 285 HDDTILIWD 293

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.3 bits (134), Expect = 5e-10
 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
                    +       A+  +        ++    GK    E     +        PK 
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLK---TGKTHTQEFADLTELYFTGLRSPKD 263

Query: 79  ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
            + I        +  +D +  K  + A L      + +   G  + +G   ++L + +  
Sbjct: 264 PNQIYGVLN--RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 139 KFKPIHR 145
             + +  
Sbjct: 322 TLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 27/252 (10%), Positives = 61/252 (24%), Gaps = 34/252 (13%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            S       + ++S A +  G ++ +          H               G      +
Sbjct: 80  LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139

Query: 72  LCWDPKHADLIATASGDKTV------RLWDARSGK------------------------- 100
               P+   L+  A               D ++GK                         
Sbjct: 140 TFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199

Query: 101 -CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN- 158
             S + E S       +K D    A  +       +D++  K   +              
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259

Query: 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218
              +   +      +        + +          YC+A D  G    +G   + ++++
Sbjct: 260 SPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

Query: 219 DISEMLCVRTFT 230
           +   +  V+   
Sbjct: 319 NPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 10/105 (9%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
            H++E+    +   +   +        G        + ++     K+       H  +  
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK---QRKLIKAANLDH--TYY 295

Query: 71  QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT 115
            + +D    D +        + +++  + +  +  +L G +++ T
Sbjct: 296 CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 16/214 (7%), Positives = 43/214 (20%), Gaps = 22/214 (10%)

Query: 26  VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85
            A       +   +      V  +       V    +             P +       
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVA---SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 58

Query: 86  SGDKTVRLWDARSGKCSQQAELSGENI-------NITYKPDGTHIAVGNRDDE------- 131
           +    +   D  + K +  A LS           +    PDG  +       +       
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 132 -----LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186
                L +            +      ++      +   L      +  +   + +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 187 VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220
           +          +   +  ++   S     S+   
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 30/219 (13%), Positives = 68/219 (31%), Gaps = 3/219 (1%)

Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
           +   +       + S      G  L  G    T  +W +         ++     A    
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 71  QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD 130
            +  D K      +        L +    +  Q        I+I+       +  G  D+
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT--KLWTGGLDN 205

Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
            +   D+R+ + + +  F  ++  + +  TGE   +   +  VEV  + +      +  H
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV-LHVNKPDKYQLHLH 264

Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
            +    +     G++F     D+L++ W       +   
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-09
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
              +      ++ S+ +  TG  LA G       V H+      ++       H   V  
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-----HESCVLS 270

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           L +         +   D  +  W    G    Q++ S   ++     D  +I  G+ D +
Sbjct: 271 LKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 132 LTILDV 137
            T+ +V
Sbjct: 330 ATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 6/164 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R++ GH      +  +  GTKL +G +D T R W +      +            +  
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HDFTSQIFS 229

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           L + P   + +A       V +         Q        +++ +   G       +D+ 
Sbjct: 230 LGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
           L          I + K    V     ++  +     +G+    V
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 13/80 (16%)

Query: 165 FLTTGNGTVEVLTYP-----------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213
           F  T +G ++ + +P             R ++T+  H      + I    R+   G    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KG 72

Query: 214 LVSLWDISEMLCVRTFTKLE 233
            V +WDIS        ++L+
Sbjct: 73  CVKVWDISHPGNKSPVSQLD 92

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 3e-09
 Identities = 8/84 (9%), Positives = 22/84 (26%), Gaps = 1/84 (1%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
             K  +  +    + + L   S D +  V+  +      V  ++   +   +    +   
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-QAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 78  HADLIATASGDKTVRLWDARSGKC 101
               I   +    +   D      
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 7e-08
 Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 12/133 (9%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-----------HGKV 57
            N    E     +              A  S+D    V   +  G               
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242

Query: 58  KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 117
            +++    A  V+ + + P+H   + TA  D  +  W+ ++ K  +      E+  +   
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301

Query: 118 PDGTHIAVGNRDD 130
                + +   DD
Sbjct: 302 CSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 17/187 (9%), Positives = 42/187 (22%), Gaps = 15/187 (8%)

Query: 57  VKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ----AELSGEN 111
           ++ +++     D +  +   P    L+   S D ++ ++       +             
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 112 INITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           +   +  +    I VG    E+  +D+                 I          L   +
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

Query: 171 GTVEVLTY--------PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
               +                               +D       VG  +S V  + +  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179

Query: 223 MLCVRTF 229
                  
Sbjct: 180 CEDDNGT 186

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            + + T     V+S+ ++     L +   D     W+++     K      + + DSV +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ---TRKKIKNFAKFNEDSVVK 299

Query: 72  LCWDPKHADLIATASGDKTVRLWDA 96
           +       +++  A+ D T +   A
Sbjct: 300 IACSD---NILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 25/247 (10%), Positives = 61/247 (24%), Gaps = 24/247 (9%)

Query: 9   KNLHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIE---PHGHGKVKDIELRG 64
           KN+   +   +K  +    +   T  ++  G+V        +            +  L  
Sbjct: 45  KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
                         +        D         + K         +N   T   + + + 
Sbjct: 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164

Query: 125 VGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL--- 176
           VG  + ++    +   +                +        E +  ++ +G V V    
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224

Query: 177 ------------TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224
                        +   R              I   P  ++     +D ++S W++    
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284

Query: 225 CVRTFTK 231
            ++ F K
Sbjct: 285 KIKNFAK 291

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 21/193 (10%), Positives = 49/193 (25%), Gaps = 27/193 (13%)

Query: 28  WNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87
            +   ++L  G  +   + + + P        IE  G    +  +   PK  +  A +S 
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRL-PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214

Query: 88  DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK 147
           D  V +           +               T++A                       
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA----------------------- 251

Query: 148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA 207
             Y VN I ++   +  +    +G +      + + +            + I        
Sbjct: 252 --YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILC 308

Query: 208 VGSADSLVSLWDI 220
           + ++D        
Sbjct: 309 LATSDDTFKTNAA 321

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 5e-09
 Identities = 12/141 (8%), Positives = 34/141 (24%), Gaps = 6/141 (4%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
                 + ++  +                     +         +E    G++   E+R 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE---TGEMAMREVRI 238

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
                     +P              +  +D       ++  L     ++    DG+ + 
Sbjct: 239 MDVFYFSTAVNPAKTRA---FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW 295

Query: 125 VGNRDDELTILDVRKFKPIHR 145
           +G    +L   D    +   +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 24/217 (11%), Positives = 47/217 (21%), Gaps = 26/217 (11%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R+     +++  +AW   G+KL     D              K             D L 
Sbjct: 128 RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
              +H                                    T + D            L 
Sbjct: 188 VWNQHES-------------------------SGVMATPFYTARKDIDPADPTAYRTGLL 222

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            +D+   +   R     +V   +  +             +E         +  V      
Sbjct: 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHS 281

Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
            Y + +   G    +G A   ++ +D   +       
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 17/157 (10%), Positives = 42/157 (26%), Gaps = 10/157 (6%)

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAV-GNRDDELTIL 135
           D I   +    + + D       +   ++            P G       N+ + L  +
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 136 DVRKFKPIHRRK------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
           D+   + + R            +   A +  G+   +      +E+  +        +  
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226
                   A +   +   +  A     L+ +   L V
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHV 158

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 8/105 (7%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH 65
           +    +  RE         S A N   T+            + +E +       I+    
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKN-----ASIKRVPL 278

Query: 66  ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110
             S   +         +        +  +DA + +   Q +L G 
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 17/202 (8%), Positives = 37/202 (18%), Gaps = 14/202 (6%)

Query: 32  GTKLASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
             + A G       V+      P    ++ D         V  +      A L+    G 
Sbjct: 86  FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145

Query: 89  KTVRLWDARSGKCSQQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
                         Q  +              +       +  A            V   
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID 200
               +            N  G + +    +     +          +  + +G       
Sbjct: 206 CTGAQNCS---SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262

Query: 201 PMGRYFAVGSADSLVSLWDISE 222
             G        ++   +    E
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVE 284

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 17/216 (7%), Positives = 32/216 (14%), Gaps = 24/216 (11%)

Query: 36  ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV------DQLCWDPKHADLIATASGDK 89
                  T   W       G      L                          A      
Sbjct: 38  LPAYFAGTTENWVSCAGC-GVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96

Query: 90  TVRLWDARSGKCSQQAELSGENI--------NITYKPDGTHIAVGNRDD-ELTILDVRKF 140
            V ++D  +       EL              I        +            L V   
Sbjct: 97  YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS------LRPLDTVVAHTAGC 194
                 K     +           +L +   ++      +      +       A     
Sbjct: 157 SDDQLTKSASCFHIHPGA--AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
                +  G      ++  L      +         
Sbjct: 215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID 250

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 13/160 (8%), Positives = 33/160 (20%), Gaps = 16/160 (10%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHA 66
           ++          +   N  G  + + +          A           +         +
Sbjct: 204 AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263

Query: 67  DSVDQLCWDPK--------HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
                +                  +  +  +      A  G+ S       ++  I    
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323

Query: 119 DGTH--IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156
           DG     A     + L I D    +     +       ++
Sbjct: 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS 363

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 13/210 (6%), Positives = 44/210 (20%), Gaps = 33/210 (15%)

Query: 22  KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL 81
                  +C  +  AS      A    +        ++   +    +   +      + +
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAAQANYPGMLVWAVASSI 233

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
           +          +  A  G                ++  G  +    ++            
Sbjct: 234 LQGDIPAAGATMKAAIDGN-------ESGRKADNFRSAGFQMVAKLKNT----------- 275

Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP 201
                      + I                    +T    +    + ++      I    
Sbjct: 276 -----------DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQ 323

Query: 202 MGRY--FAVGSADSLVSLWDISEMLCVRTF 229
            G    +A  +   ++ ++D +      + 
Sbjct: 324 DGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 11/122 (9%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKL-------ASGSVDQTARVWHIEPHGHGKVK 58
           I       +           VA       +       +   +        +         
Sbjct: 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308

Query: 59  DIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 117
            I     +D++          +D  A ++G + + ++DA S +     EL     +++ +
Sbjct: 309 PISNGHDSDAII---AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365

Query: 118 PD 119
            +
Sbjct: 366 NE 367

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (118), Expect = 4e-08
 Identities = 28/227 (12%), Positives = 51/227 (22%), Gaps = 9/227 (3%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---------HGHGKVKDIELR 63
           +  YT H  +      + +G   ASG V    R+W                         
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
                      + +            T         +     +               + 
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
                                     Y  +   +  TG    +   NG     T      
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
               VAH+   + +   P G   A  SAD  + +W+++ +   +T  
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 277

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
           H   V  + W+  GTK+AS S D+T ++W++      KV+   +       DQ       
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVA---TLKVEK-TIPVGTRIEDQQLGIIWT 292

Query: 79  ADLIATASGDKTVRLWD 95
              + + S +  +   +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRDD 130
                    IA+AS DKT+++W+  + K  +   +     +  +        +   + + 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 131 ELTILD 136
            +  ++
Sbjct: 304 FINFVN 309

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (119), Expect = 6e-08
 Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 7/135 (5%)

Query: 81  LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
              T      + L D  + +     +             G ++ V  RD ++ ++D+   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 141 KP--IHRRKFGYEVNEIAWNMT----GEMFFLT-TGNGTVEVLTYPSLRPLDTVVAHTAG 193
           +P  +   K G E   I  +       +             ++   +L P          
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 194 CYCIAIDPMGRYFAV 208
                  P  R  A+
Sbjct: 154 YDEQEYHPEPRVAAI 168

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 20/215 (9%), Positives = 50/215 (23%), Gaps = 16/215 (7%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHA 79
             VH    + +G  L     D    +  +       V +I+                +  
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAELSGENIN------------ITYKPDGTHIAVGN 127
             IA A       + D  + +  +     G   +            I          V  
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 128 RDD-ELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL 184
           ++  ++ ++D      +   +      +++   + +   F          V+       L
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
             +                 +   G   +   + D
Sbjct: 242 VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 276

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAEL------SGENINITYKPDGTHIAVGNRDD-EL 132
             +     D  V + D    + +  AE+           +     +  +   G     + 
Sbjct: 74  RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133

Query: 133 TILDVRKFKPIHRRKFGYE------------VNEIAWNMTGEMFFLT-TGNGTVEVLTYP 179
            I+D    +P   +                 V  I  +     F +     G + ++ Y 
Sbjct: 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193

Query: 180 SLRPLDTVVAHTAGC-YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
            L  L T         +   +D   RYF   +      +   ++   +  
Sbjct: 194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA 243

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 123 IAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
            +V  RD  ++ ++D   ++       GY V+    + +G   F+   +G V ++     
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 182 RP-----LDTVVAHTAGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFT 230
            P     +       +           +Y            + D   +   +  +
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 1e-07
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +   GH K + +++ +  G  L S   +     W I     G    +    HA  +  + 
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMITGIK 62

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQ 104
              K    + T S D  +++  A        
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H+  +T H  KV  V+W+    +LA+GS+D +  VW++          I+      SV+ 
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNS 274

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           + W  +    I +A  D  ++ W+
Sbjct: 275 VIWLNET--TIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 4e-05
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231
           H      ++    G+      A+  ++ WDIS  +  R F  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 52

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRD 129
                    +AT S D +V +W+                   +N     + T I    +D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 130 DELTILDV 137
             +   +V
Sbjct: 290 SNIKFWNV 297

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 3/95 (3%), Positives = 17/95 (17%), Gaps = 9/95 (9%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
                                        + ++          ++    +++  L     
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--------KVTEVKNNLTDLRLSA- 324

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112
               +     D  +  +     +  +  E     +
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 15/174 (8%), Positives = 36/174 (20%), Gaps = 13/174 (7%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI---EPHGHGKVKDIELRGHADS 68
                T      ++ A++     L   S                     K   +     S
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229

Query: 69  VDQLCWDPKHADL----IATASGDKTVRLWDARSGKCSQQAELSGENINITYK---PDGT 121
            +     P+               K     +   G       L    +  +         
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
           +         L   DV+  K     +    + ++  +   +   +   +G +  
Sbjct: 290 YYQGAPEKGVLLKYDVKTRKV---TEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 23/229 (10%), Positives = 46/229 (20%), Gaps = 22/229 (9%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            ++T                    G V Q   V+ +E                   D   
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH------DYAP 184

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN--------ITYKPDGTHIAV 125
                +  +   S        D      S +       I             P       
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 126 G-----NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYP 179
           G     +     + ++V              +   +  + GE   +         +L Y 
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
                  V         + +    +   V   D  +  + + +    RT
Sbjct: 305 VKTR--KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 6/62 (9%), Positives = 21/62 (33%)

Query: 2   GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE 61
            +  +   ++ +R+ T  K  +  +  +     +     D     + +E     +  + +
Sbjct: 296 EKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355

Query: 62  LR 63
            R
Sbjct: 356 KR 357

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 5e-07
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                +    +  +         +A+GS+D    ++ ++           L  H D V+ 
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK---RPMKIIKALNAHKDGVNN 263

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           L W+      + ++  D  ++ W+
Sbjct: 264 LLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 6e-05
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 53  GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102
           GH +V    + GH   +  L  +P     + + S D  +  W + S    
Sbjct: 1   GHDEVLKT-ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 13/65 (20%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
          +  +GH K + ++  N     L SGS D     W               + H++ +  L 
Sbjct: 7  KTISGHNKGITALTVN----PLISGSYDGRIMEWSSSS---------MHQDHSNLIVSLD 53

Query: 74 WDPKH 78
               
Sbjct: 54 NSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI 49
           +    HK  V+++ W    T L S   D   + W++
Sbjct: 252 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.5 bits (109), Expect = 9e-07
 Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 8/152 (5%)

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
            D  +     T      + L D  S K  +  +             G ++ V  RD  + 
Sbjct: 28  LDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARID 86

Query: 134 ILDVRKFKP--IHRRKFGYEVNEIAWNMTG-----EMFFLTTGNGTVEVLTYPSLRPLDT 186
           ++D+   +P  +   K G E   +  +                     ++   +L P   
Sbjct: 87  MIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 146

Query: 187 VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218
           V             P  R  A+ ++       
Sbjct: 147 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 2/110 (1%)

Query: 23  VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADL 81
           VH    + +G  L     D    +  +      KV +I+                +    
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
           IA A       + D  + +  Q     G  ++  TY P+    A+    +
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 1/124 (0%)

Query: 84  TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP 142
             S    + + D  S K +    +    +     PDGT + V N   ++++I+D      
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM 202
           I     G     +A +  G+  ++T    +   +   +   +   V        +A+ P 
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126

Query: 203 GRYF 206
           G+  
Sbjct: 127 GKKL 130

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 1e-06
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R +      V  V ++    +                  G       + +        
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT----YKPDGTHIAVGN 127
                  +   AT   D T+R+WD  + KC Q+  L  + +              I   +
Sbjct: 257 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 128 RDDELTILDV 137
            D  L   ++
Sbjct: 316 LDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 18/240 (7%)

Query: 9   KNLHSREYTGHKKK-VHSVAW--NCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIE 61
           K     ++TGH    V +V +        L SG       VW                 E
Sbjct: 51  KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 110

Query: 62  LRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
            +  A  +  + WD +     +     D         SG    +     + IN  +    
Sbjct: 111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 170

Query: 121 ------THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
                 T    G+                   K G  V ++ ++     F +T G+    
Sbjct: 171 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230

Query: 175 VL----TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
                 +   L+ ++       G          + FA   AD+ + +WD++   CV+ +T
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 12/173 (6%)

Query: 4   SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
           SSI  K +   + +  +     ++++ T   +A         V  ++         ++  
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFT 59

Query: 64  GH-ADSVDQLCWDPKH-ADLIATASGDKTVRLWDARSGKC---------SQQAELSGENI 112
           GH +  V  + + P   +  + +      V +W     K          S+   L+G   
Sbjct: 60  GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119

Query: 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165
           +I++  +G  + V     +   + +         +       I      +   
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 172

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 20/245 (8%), Positives = 49/245 (20%), Gaps = 27/245 (11%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA----- 66
                          +    G  L          V  ++  G    + +++         
Sbjct: 97  PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156

Query: 67  DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ------AELSGENINITYKPDG 120
                       +        + T  +          +      A        +     G
Sbjct: 157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 216

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI-------------AWNMTGEMFFLT 167
               +     +   L   +      R  G+                        + +   
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276

Query: 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY--FAVGSADSLVSLWDISEMLC 225
           T +  V VL   +   L            I +    +   +A+ + D  + + D      
Sbjct: 277 TASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335

Query: 226 VRTFT 230
           +R+  
Sbjct: 336 LRSVN 340

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 2   GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE 61
            E +  ++    ++   H+             +    +  +   V   +       + + 
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-----ERLA 294

Query: 62  LRGHADSVDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPD 119
                  +D +     +   L A ++GDKT+ + DA SG+  +     G     IT    
Sbjct: 295 KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

Query: 120 G 120
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 24/214 (11%), Positives = 53/214 (24%), Gaps = 16/214 (7%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG 64
               ++    +               G+        + T  + H E         I    
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 201

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK---CSQQAELSGENINITYKPDGT 121
           ++    +L W      +          +   A               G    + Y     
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261

Query: 122 HIAVGNRD----------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-- 169
            I +                + +LD +  + + + + G+E++ I  +   +         
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG 203
           + T+ +    S   L +V     G   I    MG
Sbjct: 322 DKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 23/165 (13%), Positives = 37/165 (22%), Gaps = 22/165 (13%)

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV----------GNRDDE 131
            A  +      + D  +G+     +  G   N     DG+ IA           G R D 
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 132 LTILDVRKFKPI--------HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
           + + D     P          R   G      +    G+   L     +           
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLE 137

Query: 184 LDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVR 227
                       C  I P     F +   D  ++           
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-06
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 5/148 (3%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDG 120
           LRGH  SV   C      + + T + DK +R++D+ + K   Q       +  + Y   G
Sbjct: 8   LRGHMTSV-ITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTVEVLTY 178
             ++             +             V  +       + ++ TG  + T+ V   
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 179 PSLRPLDTVVAHTAGCYCIAIDPMGRYF 206
           P    +                    YF
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYF 153

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 10/195 (5%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
            GH   V +         + +G+ D+  RV+      + K   ++L GH   V  L +  
Sbjct: 9   RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSI---NKKFL-LQLSGHDGGVWALKYAH 63

Query: 77  KHADLIATASGDKTVRLWDARS---GKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
               ++ + S D+TVR+WD +        +    +   ++I    +  +I  G+RD+ L 
Sbjct: 64  GG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
           +  + K   +      ++   +        +F+    G +  +   S      V      
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 194 CYCIAIDPMGRYFAV 208
              +      +   +
Sbjct: 182 TLIVWDVAQMKCLYI 196

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            + +GH   V ++ +   G  L SGS D+T RVW I+      V +              
Sbjct: 47  LQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDI 102

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG 126
            + K+   I T S D T+ +W               +   + + P+     VG
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 1/129 (0%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                 G             G    S     +A                +   H  ++  
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA 286

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           +       +++ + S +    +++ RSGK      L   +   +    G  +      D 
Sbjct: 287 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 345

Query: 132 LTILDVRKF 140
            + L++  F
Sbjct: 346 QSFLEILDF 354

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 23/202 (11%), Positives = 45/202 (22%), Gaps = 29/202 (14%)

Query: 36  ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
             G  +++  +          +       H    D   +D K+  L      +  V    
Sbjct: 47  GWGITNESKEILGG---DQQYLNGDCHHPHISMTDGR-YDGKY--LFINDKANTRVARIR 100

Query: 96  ARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDE-------------------LTI 134
               K  +   +        +  +       V    +                     T 
Sbjct: 101 LDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA 160

Query: 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVAHTAG 193
           +D        +      ++    + TG+    T  N      L        D VV     
Sbjct: 161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220

Query: 194 CYCIAIDPMGRYFAVGSADSLV 215
               A    G +  +G +   V
Sbjct: 221 -RIAAAVKAGNFKTIGDSKVPV 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.56
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.28
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.01
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.87
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.79
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.74
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.67
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.94
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.8
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.16
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.1
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.05
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.98
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.88
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.25
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.86
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.47
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.46
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.36
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.56
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.1
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.85
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.3
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.32
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	85.67
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	84.11

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-38  Score=243.33  Aligned_cols=204  Identities=19%  Similarity=0.335  Sum_probs=167.0

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ...++|.||+++|++|+|+|++++||||+.||+|+|||+....    ....+.+|...|.+++|+|++ .++++|+.|+.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~----~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN----KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNI  120 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE----EEEEEECSCSCEEEEEECTTS-SEEEEEETTCC
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce----eEEEEecccccEEeeEeeccc-eeeeeecccce
Confidence            3457899999999999999999999999999999999986421    233566788888888888764 45556666666


Q ss_pred             EEEEE---------------------------------------------------------------------------
Q 026765           91 VRLWD---------------------------------------------------------------------------   95 (233)
Q Consensus        91 i~iwd---------------------------------------------------------------------------   95 (233)
                      +++|+                                                                           
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            65555                                                                           


Q ss_pred             ------------CCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECC
Q 026765           96 ------------ARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNM  159 (233)
Q Consensus        96 ------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~  159 (233)
                                  ++++++...+.. ...+.+++|+|+++++++++.|+.+++||++..+......   ....+..+.|++
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence                        333333333222 2344578999999999999999999999999887765543   235689999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +++++++++.||.+++||..+++.+..+.+|...|++++|+|++++|++|+.||.|+|||
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-37  Score=241.27  Aligned_cols=216  Identities=20%  Similarity=0.338  Sum_probs=183.1

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC--CCe
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DKT   90 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~--d~~   90 (233)
                      .+.|.+|.+.|++++|+|+|++||||+.|++|+||++....  ......+.+|..+|.+++|+|++ .+|++++.  +..
T Consensus        51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~  127 (311)
T d1nr0a1          51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERF  127 (311)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCS
T ss_pred             eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc--cccccccccccCccccccccccc-ccccccccccccc
Confidence            35688999999999999999999999999999999987532  23344678899999999999986 46667765  456


Q ss_pred             EEEEECCCCeeeeeeeec-CCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (233)
                      +++|++++++....+..+ ..+.+++|+|++.+ +++|+.|+.|++||+++.+...... +..++.++.|+|++++++++
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence            999999988776655543 45678999999886 7789999999999999887776554 45679999999999999999


Q ss_pred             eCCCeEEEEecCCceeeeEE-------eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          168 TGNGTVEVLTYPSLRPLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       168 ~~~~~v~~~~~~~~~~~~~~-------~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      +.|+.+.+|+..+.+....+       .+|...|++++|+|++++|++|+.||+|+|||++++++++++..
T Consensus       208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence            99999999999877665544       35788999999999999999999999999999999999998864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-35  Score=224.28  Aligned_cols=215  Identities=23%  Similarity=0.368  Sum_probs=176.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEE----------------------
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD----------------------   70 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~----------------------   70 (233)
                      ..+|.||+++|++|+|+|++++||||+.|++|+|||+.+...    ...+.+|...|.                      
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC----CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE----EEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            357999999999999999999999999999999999864321    123344444444                      


Q ss_pred             --------------------EEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCC
Q 026765           71 --------------------QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRD  129 (233)
Q Consensus        71 --------------------~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d  129 (233)
                                          ++.|+|++ ..+++++.|+.+++||+++++....+..+ ....+++++|++.++++++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence                                44454443 45789999999999999988877666544 455678999999999999999


Q ss_pred             CcEEEEEcCCCeeeeeee-cCceeeEEEECCC--------------------CCEEEEEeCCCeEEEEecCCceeeeEEe
Q 026765          130 DELTILDVRKFKPIHRRK-FGYEVNEIAWNMT--------------------GEMFFLTTGNGTVEVLTYPSLRPLDTVV  188 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~  188 (233)
                      +.+++|++.+.+...... ....+..+.++++                    +..+++++.|+.+++|+..+++++..+.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            999999998877665443 3345666666554                    4578899999999999999999999999


Q ss_pred             eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +|...|.+++++|++++|++|+.||.|+|||+.+++++++|..+
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  288 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  288 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence            99999999999999999999999999999999999999998765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-35  Score=232.18  Aligned_cols=211  Identities=16%  Similarity=0.207  Sum_probs=174.2

Q ss_pred             ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~   98 (233)
                      +.++|+|++|+|+|++||+|+.|+.|+||+++...  ......+++|..+|.+++|+|++ ++|++|+.|+.|+|||+.+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~--~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC--EEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecc
Confidence            35789999999999999999999999999986422  22344678999999999999975 6889999999999999988


Q ss_pred             Ceeeeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-----ecCceeeEEEECCCCCEEEEEeCC
Q 026765           99 GKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-----KFGYEVNEIAWNMTGEMFFLTTGN  170 (233)
Q Consensus        99 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  170 (233)
                      +........   ...+.+++|+|+++.+++++.|+.+++|++.........     .+...+.+++|+|+++++++++.|
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            765444332   345778999999999999999999999998654432211     134578999999999999999999


Q ss_pred             CeEEEEecCCc------------------eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          171 GTVEVLTYPSL------------------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       171 ~~v~~~~~~~~------------------~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +.+++|+....                  +.+.....|...|.+++|+|++++|++++.|+.|++||+.++.+++++..+
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence            99999996431                  234455678889999999999999999999999999999999998887653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=220.76  Aligned_cols=212  Identities=17%  Similarity=0.281  Sum_probs=186.2

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...+|.+.|++++|+|++++|++|+.|++|++||+....  ......+.+|...+..++|+|++ .++++++.|+.|++|
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVW  168 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--ccccccccccccccccccccccc-ccccccccccccccc
Confidence            456899999999999999999999999999999986432  22334677899999999999975 678899999999999


Q ss_pred             ECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeE
Q 026765           95 DARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV  173 (233)
Q Consensus        95 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  173 (233)
                      |+.++++...... ...+.+++|++++..+++++.|+.+++||+++.+.+....+...+.+++|+|+++++++++.++.+
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i  248 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV  248 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccc
Confidence            9999887665543 456678999999999999999999999999999888887788889999999999999999999999


Q ss_pred             EEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++|+.+..+.. ....|...|.+++|+|++++|++|+.||.|++||+.+++++.++.
T Consensus       249 ~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         249 EVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             EEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc
Confidence            99999877664 456799999999999999999999999999999999999988765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.5e-34  Score=218.78  Aligned_cols=207  Identities=19%  Similarity=0.256  Sum_probs=165.4

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      .+++.||+++|++|+|+|++++|+||+.|++|++||++...   .......+|...|.+++|+|++ . +++++.|+.++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~   79 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTTS-C-EEEEETTTEEE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeeccc-e-eecccceeeEE
Confidence            57889999999999999999999999999999999986422   1111224789999999999975 4 45778899999


Q ss_pred             EEECCCCeee-------------ee----------------------------eeecCCeeEEEECCCCCeEEEEcCCCc
Q 026765           93 LWDARSGKCS-------------QQ----------------------------AELSGENINITYKPDGTHIAVGNRDDE  131 (233)
Q Consensus        93 iwd~~~~~~~-------------~~----------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~  131 (233)
                      +|+.......             ..                            ........+++|+|+++++++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9997532100             00                            001112345789999999999999999


Q ss_pred             EEEEEcCCCeeee--eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceee---eEEeeecCceeEEEECCCCCEE
Q 026765          132 LTILDVRKFKPIH--RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL---DTVVAHTAGCYCIAIDPMGRYF  206 (233)
Q Consensus       132 i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~i~~~p~~~~l  206 (233)
                      +.+||+++.+...  ...+...+.+++|+|+++++++++.++.+++|+..+....   ..+.+|...|++++|+|++++|
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            9999998765443  3345667999999999999999999999999998765433   4456789999999999999999


Q ss_pred             EEeeCCCcEEEEecCCcE
Q 026765          207 AVGSADSLVSLWDISEML  224 (233)
Q Consensus       207 as~s~dg~v~iwd~~~~~  224 (233)
                      ++|+.||.|+|||+++..
T Consensus       240 ~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             EEEETTSCEEEEETTCTT
T ss_pred             EEEcCCCEEEEEECCCCC
Confidence            999999999999998654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=217.68  Aligned_cols=202  Identities=20%  Similarity=0.293  Sum_probs=180.8

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...+.+|...|.+++|+|++.++++++.|+.|++|++...    .......+|...|.+++|++++ ..+++|+.|+.++
T Consensus       134 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~  208 (337)
T d1gxra_         134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVR  208 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccc-ccccccccccccc
Confidence            3567789999999999999999999999999999998642    1234567899999999999875 5788999999999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCe
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      +||+++++..........+.+++|+|+++++++++.|+.+.+||++..+......+...+..++|+|+++++++++.|+.
T Consensus       209 i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe
Confidence            99999999888887788888999999999999999999999999998877766666778999999999999999999999


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      +++|+..+++.+..+ .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus       289 i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         289 LNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999988887664 58889999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9e-33  Score=214.07  Aligned_cols=204  Identities=15%  Similarity=0.207  Sum_probs=170.0

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC--CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~--D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .++.+|.++|.+++|+|++++|++++.  |+.++||+++....    ...+.+|...|.+++|+|++..++++|+.|+.|
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~----~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccc----cccccccccccccccccccceeeeccccccccc
Confidence            567899999999999999999999986  56699999875321    224678999999999999988788999999999


Q ss_pred             EEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--------cCceeeEEEECCCCC
Q 026765           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEIAWNMTGE  162 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~  162 (233)
                      ++||+++++....... ...+.++.++|+++++++++.|+.+.+||++.........        +...+.+++|+|+++
T Consensus       172 ~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~  251 (311)
T d1nr0a1         172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  251 (311)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence            9999999887766554 3566789999999999999999999999998776654433        234689999999999


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecC-ceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ++++++.||.+++||.++++.+..+..|.. ....+++.+++++|++++.||.|++||++
T Consensus       252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999999999999999999888876653 22334455556789999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=212.69  Aligned_cols=213  Identities=24%  Similarity=0.368  Sum_probs=176.1

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...+|...|++++|+|++++|++|+.|++|++|+....    .....+.+|...|.++++++++ ..+++|+.++.+++|
T Consensus       116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~  190 (388)
T d1erja_         116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIW  190 (388)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             cccCCCCCEEEEEECCCCCcceeccccccccccccccc----cccccccccccccccccccccc-ccccccccceeeeee
Confidence            34578999999999999999999999999999998642    2334577899999999999875 577899999999999


Q ss_pred             ECCCCeeeeeeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeee--------cCceeeEEEECCCCCEEE
Q 026765           95 DARSGKCSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEIAWNMTGEMFF  165 (233)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  165 (233)
                      |.++...............+.+.+ ++++|++++.|+.+.+||+++........        +...+.++.|++++++++
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            999888777666666666666654 78899999999999999998776654432        234689999999999999


Q ss_pred             EEeCCCeEEEEecCCce------------eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          166 LTTGNGTVEVLTYPSLR------------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       166 ~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      +++.|+.+++|+....+            .......|...|.+++|+|++++|++|+.||.|+|||+.+++++++|+.+
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence            99999999999986433            23345568889999999999999999999999999999999999999865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-32  Score=218.15  Aligned_cols=207  Identities=14%  Similarity=0.224  Sum_probs=167.1

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ...++.+|.++|++++|+|++++|+||+.|++|+||++....  ......+.+|...|.+++|+|++ +.|++|+.|+.+
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~--~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i  119 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVI  119 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc--ccccccccccccccccccccccc-ccceeecccCcc
Confidence            346788999999999999999999999999999999987422  22344567899999999999985 678899999999


Q ss_pred             EEEECCCCeeeeeee-----ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee------------------eee-ee
Q 026765           92 RLWDARSGKCSQQAE-----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP------------------IHR-RK  147 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~-~~  147 (233)
                      ++|++..........     ....+.+++|+|++++|++|+.|+.+++||+.....                  ... ..
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  199 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             eeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence            999987654322111     234567899999999999999999999999753211                  111 11


Q ss_pred             cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      +...+.+++|+|+++++++++.|+.+.+||..+.+.+..+..|..+|.+++|+|++++|++|+ |+.+++|+...
T Consensus       200 ~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         200 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence            234578999999999999999999999999999899999999999999999999998888665 77777766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=208.92  Aligned_cols=221  Identities=17%  Similarity=0.196  Sum_probs=174.4

Q ss_pred             ccceeeeCc-cccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCCCce----eeEEEecCcCcEEEEEEcCCCCCEEE
Q 026765           11 LHSREYTGH-KKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKV----KDIELRGHADSVDQLCWDPKHADLIA   83 (233)
Q Consensus        11 ~~~~~~~~H-~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~   83 (233)
                      .....+.+| ...|++++|+|  ++.+||||+.||+|+|||+........    ...++..|..+|.+++|++++..+++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            344577787 56899999998  567999999999999999864322211    12245678899999999998654443


Q ss_pred             EE-eCCCeEEEEECCCCeeeeeeee-cCCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeeeeee----cCceeeEEE
Q 026765           84 TA-SGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIA  156 (233)
Q Consensus        84 sg-~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~  156 (233)
                      .+ +.++.+++|+..++++...+.. ...+.+++|+|++.+ +++++.|+.+++||+...+......    +...+.+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            22 3477899999998887776654 345677999999876 6678899999999998766554432    234589999


Q ss_pred             ECCC-CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC---CCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          157 WNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID---PMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       157 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~---p~~~~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      |+|+ ++++++++.|+.+++||.++++.+..+.+|...+.++.|+   |++++|++++.|+.|+|||+.+++++++|..
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence            9997 5788889999999999999999999998888776555544   6899999999999999999999999998864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-32  Score=210.26  Aligned_cols=219  Identities=11%  Similarity=0.073  Sum_probs=153.9

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ++...+|++.|++|+|+|++++|||||.|++|||||++.... ........+|..+|.+++|+|+++.+|++|+.|+.|+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-ceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            456779999999999999999999999999999999975332 2222334479999999999998777899999999999


Q ss_pred             EEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-------cCceeeEEEECCCCC-
Q 026765           93 LWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-------FGYEVNEIAWNMTGE-  162 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~-  162 (233)
                      +|++.............  ......+.++...+++++.++.+.+||++.........       .........+.+.++ 
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            99998776544433322  22345566778899999999999999975322111000       001112222333334 


Q ss_pred             ---------------------------------------------EEEEEeCCCeEEEEecCCceee-------------
Q 026765          163 ---------------------------------------------MFFLTTGNGTVEVLTYPSLRPL-------------  184 (233)
Q Consensus       163 ---------------------------------------------~~~~~~~~~~v~~~~~~~~~~~-------------  184 (233)
                                                                   .+++++.+|.+.+|+.......             
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence                                                         4445555555555544321100             


Q ss_pred             --eEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          185 --DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       185 --~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                        .....|...|++++|+|++++||+|+.||.|+|||+++++++++|..+
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~  292 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence              001234456889999999999999999999999999999999988653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-30  Score=200.05  Aligned_cols=201  Identities=24%  Similarity=0.387  Sum_probs=173.2

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+.+|...+.++.|+|+++.+++++.|+.+++|++....    ....+.+|...+.+++|+|++ .+|++|+.|+.|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~  169 (317)
T d1vyhc1          95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRV  169 (317)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             cccccccccceeeeccCCCceEEeeccCcceeEeecccce----eeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEE
Confidence            4567899999999999999999999999999999986432    234577899999999999975 68899999999999


Q ss_pred             EECCCCeeeeeeeec-CCeeEEEECCC--------------------CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCce
Q 026765           94 WDARSGKCSQQAELS-GENINITYKPD--------------------GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE  151 (233)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~  151 (233)
                      |++.+++....+... .....+.++|+                    +..+++++.|+.+++||+++.+.+.... +...
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  249 (317)
T d1vyhc1         170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  249 (317)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            999988766655432 33444555543                    4578899999999999999988876654 4567


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd  219 (233)
                      +..++|+|+++++++++.||.+++||.++++++..+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus       250 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-31  Score=209.78  Aligned_cols=206  Identities=19%  Similarity=0.322  Sum_probs=162.8

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC--------------ceeeEEEecCcCcEEEEEEcCCCCCEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--------------KVKDIELRGHADSVDQLCWDPKHADLIA   83 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~   83 (233)
                      +|++.|+||+|+|+|++||||+ |++|+||++......              ........+|...|.+++|+|++ ++|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-Ccce
Confidence            6999999999999999999987 999999998642210              00111234678889999999975 6889


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEE-ECCCC
Q 026765           84 TASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA-WNMTG  161 (233)
Q Consensus        84 sg~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~  161 (233)
                      +|+.|+.|++||...++....... ...+.++.+++++..+++++.++.+++||+++...............+. +.+++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            999999999999999887666553 4566789999999999999999999999999877766555444444444 45678


Q ss_pred             CEEEEEeCCCeEEEEecCCceeeeEE-------eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765          162 EMFFLTTGNGTVEVLTYPSLRPLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (233)
Q Consensus       162 ~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~  225 (233)
                      +++++++.|+.+++|+..+......+       .+|...|.+++|+|++++|++|+.||.|++||+..+..
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            99999999999999999877655443       35788999999999999999999999999999986654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-31  Score=210.32  Aligned_cols=215  Identities=13%  Similarity=0.196  Sum_probs=159.0

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc--eeeEEEe-----------------------------
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK--VKDIELR-----------------------------   63 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~--~~~~~~~-----------------------------   63 (233)
                      ...+|.+.|+++++++  ++++|||.|++|||||........  .......                             
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4579999999999864  799999999999999954321100  0000000                             


Q ss_pred             ------------------------------cCcCcEEEEEEcCCC----CCEEEEEeCCCeEEEEECCCCee--------
Q 026765           64 ------------------------------GHADSVDQLCWDPKH----ADLIATASGDKTVRLWDARSGKC--------  101 (233)
Q Consensus        64 ------------------------------~h~~~v~~~~~~~~~----~~~l~sg~~d~~i~iwd~~~~~~--------  101 (233)
                                                    .+...+..++|.+..    ..++++++.|+.+++||+.....        
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence                                          012223444554432    24667888888888888743210        


Q ss_pred             -------eeee----eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-------cCceeeEEEECCCCCE
Q 026765          102 -------SQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-------FGYEVNEIAWNMTGEM  163 (233)
Q Consensus       102 -------~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  163 (233)
                             ....    .....+.+++|+|++ ++++|+.|+.|++||+.+.+++....       +...|.+++|+|++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence                   0000    011224578999997 88999999999999999887765443       2347999999999999


Q ss_pred             EEEEeCCC---eEEEEecCCceeeeEEe-------------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765          164 FFLTTGNG---TVEVLTYPSLRPLDTVV-------------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (233)
Q Consensus       164 ~~~~~~~~---~v~~~~~~~~~~~~~~~-------------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~  227 (233)
                      +++++.|+   .+++||..+++.+..+.             +|...|++++|+|++++|++||.|++|+|||++++++++
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            99999886   58999998877666653             799999999999999999999999999999999999999


Q ss_pred             eeecC
Q 026765          228 TFTKL  232 (233)
Q Consensus       228 ~~~~~  232 (233)
                      +|.+|
T Consensus       326 ~l~gH  330 (393)
T d1sq9a_         326 TLNMH  330 (393)
T ss_dssp             EEECC
T ss_pred             EECCc
Confidence            99865

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=195.41  Aligned_cols=212  Identities=20%  Similarity=0.289  Sum_probs=168.2

Q ss_pred             ceeeeCccccE-EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V-~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..++.||...| +|++|  ++++||||+.|++|+|||+...    ....++.+|..+|.+++|+|+  .+|++|+.|+.|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTV   76 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEEETT--TEEEEEETTCCE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCCEEEEEEcCC--CEEEEEeccccc
Confidence            45789998875 66665  6899999999999999998642    234568899999999999985  478999999999


Q ss_pred             EEEECCCCeeeeeeeecCCe---eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-------------------
Q 026765           92 RLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-------------------  149 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------  149 (233)
                      ++|++...++..........   ....+.+++..+++++.|+.+++||++...........                   
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            99999988766554433322   33567889999999999999999998765432211100                   


Q ss_pred             ---ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765          150 ---YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (233)
Q Consensus       150 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i  226 (233)
                         .......+.++++.++.+..++.+++|+..+.+.+....++...+.++.++|++.++++++.|+.|++||+.++.++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccc
Confidence               01112345567889999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             EeeecC
Q 026765          227 RTFTKL  232 (233)
Q Consensus       227 ~~~~~~  232 (233)
                      ..+..+
T Consensus       237 ~~~~~h  242 (355)
T d1nexb2         237 YTLQGH  242 (355)
T ss_dssp             EEECCC
T ss_pred             cccccc
Confidence            888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.3e-30  Score=194.61  Aligned_cols=207  Identities=14%  Similarity=0.162  Sum_probs=158.9

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      .+++++.||.++|++++|+|    |+||+.||+|++||+..         ...+|...|.++++.+.  ..+++++.|++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~---------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~   68 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS---------MHQDHSNLIVSLDNSKA--QEYSSISWDDT   68 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE---------EECCCCSCEEEEECCST--TCCEEEETTTE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC---------CCCCCCCCEEEEEecCC--CeEEEEeeccc
Confidence            45789999999999999987    99999999999999753         23579999999999875  35689999999


Q ss_pred             EEEEECCCCeee---ee--------------------ee---------ecCCeeEEEECCCCCeEEEEcCCC-cEEEEEc
Q 026765           91 VRLWDARSGKCS---QQ--------------------AE---------LSGENINITYKPDGTHIAVGNRDD-ELTILDV  137 (233)
Q Consensus        91 i~iwd~~~~~~~---~~--------------------~~---------~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~  137 (233)
                      +++|++...+..   ..                    +.         ........+++|++..+++++.++ .+++|++
T Consensus        69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             cccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeec
Confidence            999987532110   00                    00         000111245677888888887765 6999998


Q ss_pred             CCCeeeeeee--cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee-EEeeecCceeEEEECCCC----------C
Q 026765          138 RKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMG----------R  204 (233)
Q Consensus       138 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~i~~~p~~----------~  204 (233)
                      ...+......  +...+.+++|+|+++++++++.+|.+++|+..+.+... .+..|...|.+++|+|.+          .
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             cccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence            7655444333  34568999999999999999999999999998877654 356899999999998754          6


Q ss_pred             EEEEeeCCCcEEEEecCC-cEEEEeeecC
Q 026765          205 YFAVGSADSLVSLWDISE-MLCVRTFTKL  232 (233)
Q Consensus       205 ~las~s~dg~v~iwd~~~-~~~i~~~~~~  232 (233)
                      +|++|+.|++|+|||+.. .++++.+.++
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~~~~~~~~~h  257 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPMKIIKALNAH  257 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred             eeEeecCCCeEEEEECCCCCeEEEEeCCC
Confidence            899999999999999975 5556655443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-28  Score=189.13  Aligned_cols=203  Identities=12%  Similarity=0.162  Sum_probs=159.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC--CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~--D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .++..|.++|++++|+++++++++++.  |+.+++|+.+...    ...++.+|...|.+++|+|+++.++++++.|+.+
T Consensus       109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  184 (325)
T d1pgua1         109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN----SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV  184 (325)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC----EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred             cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc----cceeeeecccccccccccccccceEEEeeccccc
Confidence            346679999999999999999987764  7789999986422    3345788999999999999988888899999999


Q ss_pred             EEEECCCCeeeeeeee----cCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEEC---CCCC
Q 026765           92 RLWDARSGKCSQQAEL----SGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWN---MTGE  162 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~----~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~---~~~~  162 (233)
                      ++||+...+.......    ...+.+++|+|+ +.++++++.|+.|++||+++.+.+.... +...+..+.|+   ++++
T Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSS
T ss_pred             ccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCC
Confidence            9999988765444322    234678999997 6788999999999999999887766544 22333333333   6899


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCc--eeEEEECCC-CCEEEEeeCCCcEEEEec
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG--CYCIAIDPM-GRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v~~i~~~p~-~~~las~s~dg~v~iwd~  220 (233)
                      ++++++.|+.+++||.++++++..+..|...  +..+++.+. +.+|++||.||.|+|||+
T Consensus       265 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999999999999999999999888776654  334444432 358899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-28  Score=186.24  Aligned_cols=210  Identities=21%  Similarity=0.320  Sum_probs=161.3

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      .+.+++.||++.|.+ +++++|++|||||.|++|+|||+....    ....+.+|...|.+++|+|   .+|++|+.|+.
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~   78 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRT   78 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSC
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCCEEEEEeCC---Cccccceeccc
Confidence            345789999999865 366689999999999999999986532    2346789999999999986   38899999999


Q ss_pred             EEEEECCCCeeeeeeeecCC---------------------------------------eeEEEECCCCCeEEEEcCCCc
Q 026765           91 VRLWDARSGKCSQQAELSGE---------------------------------------NINITYKPDGTHIAVGNRDDE  131 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~l~~~~~d~~  131 (233)
                      +++|+...............                                       .......+....++.++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            99999876543221111000                                       001122334557788888999


Q ss_pred             EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765          132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       132 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~  211 (233)
                      +++||++..+.+.... ++......+.++++++++++.||.+++|+.+..+.+..+.+|...+.++++++  ++|++|+.
T Consensus       159 i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~  235 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA  235 (342)
T ss_dssp             EEEEEGGGTEEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEET
T ss_pred             EEEeecccceeeEEEc-CcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcC
Confidence            9999988766654433 22344455566889999999999999999999999999999999999888865  69999999


Q ss_pred             CCcEEEEecCCcEEEEeeec
Q 026765          212 DSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       212 dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ||.|++||+...+..+.+..
T Consensus       236 d~~i~iwd~~~~~~~~~~~~  255 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQG  255 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECS
T ss_pred             CCEEEEEecccccccccccc
Confidence            99999999998888777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-26  Score=174.05  Aligned_cols=208  Identities=23%  Similarity=0.375  Sum_probs=161.4

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~   90 (233)
                      ..++.+.+|...|+|++|  ++++||||+.||+|+|||++...    ....+++|...|.+++|++   ++|++|+.|+.
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~----~~~~l~~H~~~V~~v~~~~---~~l~s~s~D~~   76 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYDE---RVIITGSSDST   76 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECCS---SEEEEEETTSC
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEeeeeccc---ceeeccccccc
Confidence            344567789999999875  78999999999999999986422    3346789999999999853   58999999999


Q ss_pred             EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee----cCceeeEEEECCCCCEEEE
Q 026765           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  166 (233)
                      |++|++..+.......... .......+....++++..++.+.+||+..........    +...+....+  ....+++
T Consensus        77 i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~  153 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHC-EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS  153 (293)
T ss_dssp             EEEEESSSCCEEEEECCCC-SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred             ccccccccccccccccccc-cccccccccccceeecccccceeEeecccccccccccccccccccccccee--ccccccc
Confidence            9999999887655443332 2334455666788999999999999987654332211    2233444444  4567888


Q ss_pred             EeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      ++.|+.+++|+.++.+.+..+.++...+..+.++  +.++++++.||.|+|||+.+..+++.+...
T Consensus       154 ~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  217 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH  217 (293)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccc
Confidence            8999999999999999988888888888887775  468999999999999999999888877653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.2e-27  Score=179.10  Aligned_cols=205  Identities=12%  Similarity=0.167  Sum_probs=151.2

Q ss_pred             eee-eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-----------ceeeEE--------------------
Q 026765           14 REY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIE--------------------   61 (233)
Q Consensus        14 ~~~-~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-----------~~~~~~--------------------   61 (233)
                      +.+ .+|.+.|++++|+|++. +++++.|+++++|+.......           ....+.                    
T Consensus        48 ~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~  126 (299)
T d1nr0a2          48 RVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  126 (299)
T ss_dssp             ECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             EEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccc
Confidence            344 47999999999999986 556778999999986432110           000000                    


Q ss_pred             -----EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee--eeecCCeeEEEECCCCCeEEEEcCCCcEEE
Q 026765           62 -----LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ--AELSGENINITYKPDGTHIAVGNRDDELTI  134 (233)
Q Consensus        62 -----~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  134 (233)
                           .......+.+++|+|++ .++++|+.|+.|++||+++++....  ......+.+++|+|++.++++++.|+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~  205 (299)
T d1nr0a2         127 HGKLTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP  205 (299)
T ss_dssp             TTEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 00123456788898874 6788999999999999988765432  233456788999999999999999999999


Q ss_pred             EEcCCCeeeeeee----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE--eeec-CceeEEEECCCCCEEE
Q 026765          135 LDVRKFKPIHRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV--VAHT-AGCYCIAIDPMGRYFA  207 (233)
Q Consensus       135 ~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~-~~v~~i~~~p~~~~la  207 (233)
                      ||+.+........    +...+.+++|+|+++++++++.|+.+++|+.++......+  ..|. ..+.++.+ +++++|+
T Consensus       206 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~  284 (299)
T d1nr0a2         206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIV  284 (299)
T ss_dssp             EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEE
T ss_pred             ccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEE
Confidence            9987654432211    3457999999999999999999999999998765433222  2333 45666655 5678999


Q ss_pred             EeeCCCcEEEEecC
Q 026765          208 VGSADSLVSLWDIS  221 (233)
Q Consensus       208 s~s~dg~v~iwd~~  221 (233)
                      +|+.|++|+|||+.
T Consensus       285 s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         285 SAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEECC
T ss_pred             EEeCCCEEEEEecc
Confidence            99999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.5e-26  Score=177.39  Aligned_cols=212  Identities=17%  Similarity=0.222  Sum_probs=160.9

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      ..+++.+|.++|++++|+|+ .+|+||+.|++|++|+.....  .........+........+.++ ...+++++.|+.|
T Consensus        45 ~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i  120 (355)
T d1nexb2          45 FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTL  120 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEE
T ss_pred             EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc--cccccccccccccccccccccc-cceeeeecCCCcE
Confidence            45788999999999999985 689999999999999986421  1111112223334455566665 4678899999999


Q ss_pred             EEEECCCCeeeeeeeec----------------------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-c
Q 026765           92 RLWDARSGKCSQQAELS----------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F  148 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~  148 (233)
                      ++||+++..........                      .......+.++++.++++..|+.+.+||+++.+.+.... .
T Consensus       121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  200 (355)
T d1nexb2         121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  200 (355)
T ss_dssp             EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc
Confidence            99999876432211100                      001123456678899999999999999999887765544 3


Q ss_pred             CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      ...+..+.++++++.+++++.|+.+++|+.++++.+..+.+|...|.++++++  ++|++|+.||.|++||+++......
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceecc
Confidence            45678889999999999999999999999999999999999999999999975  6999999999999999998766544


Q ss_pred             e
Q 026765          229 F  229 (233)
Q Consensus       229 ~  229 (233)
                      +
T Consensus       279 ~  279 (355)
T d1nexb2         279 Y  279 (355)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.7e-26  Score=175.29  Aligned_cols=204  Identities=21%  Similarity=0.300  Sum_probs=151.4

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-------------------------------------
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------------------------------------   54 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-------------------------------------   54 (233)
                      ..+++.+|.+.|++++|+|  ++|+||+.|+++++|+......                                     
T Consensus        49 ~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  126 (342)
T d2ovrb2          49 CLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET  126 (342)
T ss_dssp             EEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred             EEEEEeCCCCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccc
Confidence            4567889999999999986  4999999999999998532100                                     


Q ss_pred             Cc---------------------------------------eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           55 GK---------------------------------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        55 ~~---------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      ..                                       .....+.+|...+..+.++   +..+++|+.|+.|++||
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSCEEEEE
T ss_pred             ccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCC---CCEEEEEeCCCeEEEee
Confidence            00                                       0001223455555554443   35788999999999999


Q ss_pred             CCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--CceeeEEEECCCCCEEEEEeCCCe
Q 026765           96 ARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      ++.+++......+. .+.++  +++++++++++.|+.+++||+...+.......  .+.....++.++++++++++.||.
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~  281 (342)
T d2ovrb2         204 VETGNCIHTLTGHQSLTSGM--ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT  281 (342)
T ss_dssp             TTTCCEEEEECCCCSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSE
T ss_pred             cccceeeeEecccccceeEE--ecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCE
Confidence            99988776655443 23334  44567999999999999999988766554432  222233344456789999999999


Q ss_pred             EEEEecCCceeeeEEe-----eecCceeEEEECCCCCEEEEeeCCCc----EEEEecCC
Q 026765          173 VEVLTYPSLRPLDTVV-----AHTAGCYCIAIDPMGRYFAVGSADSL----VSLWDISE  222 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~las~s~dg~----v~iwd~~~  222 (233)
                      +++||.++++.+..+.     +|...|++++|+|++.+||+|+.||+    |++||++.
T Consensus       282 i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999998887764     46778999999999999999999985    99999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3e-26  Score=182.34  Aligned_cols=175  Identities=15%  Similarity=0.249  Sum_probs=136.8

Q ss_pred             CccccEEEEEECcC-----CCEEEEEeCCCCEEEEecccCCC---------CceeeE-----EEecCcCcEEEEEEcCCC
Q 026765           18 GHKKKVHSVAWNCT-----GTKLASGSVDQTARVWHIEPHGH---------GKVKDI-----ELRGHADSVDQLCWDPKH   78 (233)
Q Consensus        18 ~H~~~V~~~~~~~~-----~~~l~s~~~D~~v~vW~~~~~~~---------~~~~~~-----~~~~h~~~v~~~~~~~~~   78 (233)
                      .+...+..++|.++     +.++++++.|+++++|++.....         ......     ....+...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            35667888888775     46789999999999999853211         000000     112345568899999974


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeeeeee-------cCCeeEEEECCCCCeEEEEcCCCc---EEEEEcCCCeeeeeee-
Q 026765           79 ADLIATASGDKTVRLWDARSGKCSQQAEL-------SGENINITYKPDGTHIAVGNRDDE---LTILDVRKFKPIHRRK-  147 (233)
Q Consensus        79 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~~-  147 (233)
                        +|++|+.|++|++||+.++++...+..       ...+.+++|+|++++|++|+.|+.   +++||+.+.+.+.... 
T Consensus       197 --~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~  274 (393)
T d1sq9a_         197 --LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  274 (393)
T ss_dssp             --EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             --EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecc
Confidence              789999999999999999887654432       345678999999999999998874   8999998876655442 


Q ss_pred             -------------cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCce
Q 026765          148 -------------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC  194 (233)
Q Consensus       148 -------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  194 (233)
                                   +...|++++|+|+++++++++.|++|++||.++++.+.++.+|...|
T Consensus       275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             ccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcc
Confidence                         33458999999999999999999999999999999999999997554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-26  Score=174.69  Aligned_cols=210  Identities=16%  Similarity=0.200  Sum_probs=150.5

Q ss_pred             CCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc-eee------------------EEEe--
Q 026765            5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKD------------------IELR--   63 (233)
Q Consensus         5 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~-~~~------------------~~~~--   63 (233)
                      .+..++.. ....+|++.|.+++|+++ ..++|++.|++|++|++....... ...                  ..+.  
T Consensus        32 ~v~~Wd~~-~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (287)
T d1pgua2          32 RIMEWSSS-SMHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF  109 (287)
T ss_dssp             CEEETTTT-EEECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETT
T ss_pred             eEEEEECC-CCCCCCCCCEEEEEecCC-CeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeecc
Confidence            34444442 345689999999999865 567999999999999875321100 000                  0011  


Q ss_pred             --------cCcCcEEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcE
Q 026765           64 --------GHADSVDQLCWDPKHADLIATASGD-KTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDEL  132 (233)
Q Consensus        64 --------~h~~~v~~~~~~~~~~~~l~sg~~d-~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i  132 (233)
                              .+...+  .++++++. .++.++.| +.+++|++...+......  ....+.+++|+|++.+|++|+.|+.+
T Consensus       110 ~~~~~~~~~~~~~~--~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i  186 (287)
T d1pgua2         110 TGDIIKSVRLNSPG--SAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI  186 (287)
T ss_dssp             TCCEEEEEECSSCE--EEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ceeeeeecccccee--eeeeccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccc
Confidence                    111222  24455544 44555555 579999987655444332  23456789999999999999999999


Q ss_pred             EEEEcCCCeeeeee--ecCceeeEEEECCC----------CCEEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEE
Q 026765          133 TILDVRKFKPIHRR--KFGYEVNEIAWNMT----------GEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAI  199 (233)
Q Consensus       133 ~i~d~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~  199 (233)
                      ++||+...+.....  .+...+.+++|+|.          ++++++++.|+++++|+.+. .+.+..+.+|...|++++|
T Consensus       187 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~  266 (287)
T d1pgua2         187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW  266 (287)
T ss_dssp             EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE
T ss_pred             cceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEE
Confidence            99999887765432  23457889999865          46789999999999999865 5566667789999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEec
Q 026765          200 DPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       200 ~p~~~~las~s~dg~v~iwd~  220 (233)
                      +|++ .|++++.|+.|++||+
T Consensus       267 ~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         267 ETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETT-EEEEEETTSCEEEEEE
T ss_pred             CCCC-EEEEEECCCeEEEEEE
Confidence            9976 6889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-25  Score=168.89  Aligned_cols=199  Identities=20%  Similarity=0.305  Sum_probs=149.4

Q ss_pred             cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC------------------------------------
Q 026765           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG------------------------------------   55 (233)
Q Consensus        12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~------------------------------------   55 (233)
                      ..+++.+|.+.|++++|  ++++|+||+.|++|++|++......                                    
T Consensus        47 ~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          47 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred             EEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccc
Confidence            45688999999999997  5789999999999999987432100                                    


Q ss_pred             ---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcE
Q 026765           56 ---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL  132 (233)
Q Consensus        56 ---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  132 (233)
                         ......+..|...+..+.+.+   ..+++++.|+.|++||+++++....+....... ..+.+++.++++++.|+.+
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~dg~i  200 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRDRLVVSGSSDNTI  200 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-EEEEEETTEEEEEETTSCE
T ss_pred             cccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEccccccc-ccccCCCCeEEEecCCCEE
Confidence               001112345677777777654   467789999999999999988776655433222 2234456799999999999


Q ss_pred             EEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC---------ceeeeEEeeecCceeEEEECCCC
Q 026765          133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---------LRPLDTVVAHTAGCYCIAIDPMG  203 (233)
Q Consensus       133 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~v~~i~~~p~~  203 (233)
                      ++||+++.+.+...... ......+.++++++++++.||.+++|+...         ...+..+.+|...|++++|+  +
T Consensus       201 ~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~  277 (293)
T d1p22a2         201 RLWDIECGACLRVLEGH-EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--E  277 (293)
T ss_dssp             EEEETTTCCEEEEECCC-SSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--S
T ss_pred             EEEecccceeeeeeccc-ceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--C
Confidence            99999987776554422 222234567889999999999999999632         24567788999999999995  4


Q ss_pred             CEEEEeeCCCcEEEEe
Q 026765          204 RYFAVGSADSLVSLWD  219 (233)
Q Consensus       204 ~~las~s~dg~v~iwd  219 (233)
                      ++|++||.||+|+|||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEecCCEEEEeC
Confidence            6899999999999998

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8.3e-25  Score=169.03  Aligned_cols=170  Identities=20%  Similarity=0.315  Sum_probs=143.3

Q ss_pred             EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVR  138 (233)
Q Consensus        60 ~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (233)
                      ..++||.+.|++++|+|++ .+|+||+.||.|+|||+.+++....+..+ ..+.+++|+|++.++++++.|+.+.+|+..
T Consensus        49 ~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             EEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            4688999999999999975 68899999999999999999888777654 557789999999999999999999999864


Q ss_pred             CCeee----eee------------------------------------------ecCceeeEEEECCCCCEEEEEeCCCe
Q 026765          139 KFKPI----HRR------------------------------------------KFGYEVNEIAWNMTGEMFFLTTGNGT  172 (233)
Q Consensus       139 ~~~~~----~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (233)
                      .....    ...                                          .....+....+.+.+.+++++..++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence            32110    000                                          00112445667788899999999999


Q ss_pred             EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +++||.++++++..+.+|...|++++|+|++++|++|+.||.|++||+.....+.++.
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence            9999999999999999999999999999999999999999999999999998887764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6.9e-25  Score=171.05  Aligned_cols=207  Identities=10%  Similarity=0.035  Sum_probs=159.4

Q ss_pred             CccccEEEEEECcCCCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd   95 (233)
                      +|...|++++|+|||++|++++.|.  .|++||+....     ...+..|...|..++|+|++ +.|++++.++.+++|+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVD  113 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----EEEeeCCCceEEeeeecccc-cccceecccccccccc
Confidence            7999999999999999998887654  79999986422     23567899999999999985 5788999999999999


Q ss_pred             CCCCeeeeeeeec-CCeeEEEECCCCCeEEEEc----------CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765           96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGN----------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (233)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (233)
                      +.+++........ ....+++|+|+|++|+.+.          .++.+.+||+.+.+..........+..+.|+|+|+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL  193 (360)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred             ccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEE
Confidence            9988876655543 3456799999999998653          2346889999887766555556677888899999999


Q ss_pred             EEEeCCCeEEEEecCCce--------e---------------------------------------------ee------
Q 026765          165 FLTTGNGTVEVLTYPSLR--------P---------------------------------------------LD------  185 (233)
Q Consensus       165 ~~~~~~~~v~~~~~~~~~--------~---------------------------------------------~~------  185 (233)
                      +.++.++.+.+|+.....        .                                             ..      
T Consensus       194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE  273 (360)
T ss_dssp             EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred             EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence            888887777776531100        0                                             00      


Q ss_pred             -----------------------------------EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          186 -----------------------------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       186 -----------------------------------~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                                                         +...|.+.|.+++|+|||++|++++.||.|++||+++++..+++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence                                               001123457789999999999999999999999999887766653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.8e-23  Score=162.86  Aligned_cols=191  Identities=14%  Similarity=0.106  Sum_probs=152.3

Q ss_pred             EEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-eEEEEECCCCeee
Q 026765           25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-TVRLWDARSGKCS  102 (233)
Q Consensus        25 ~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-~i~iwd~~~~~~~  102 (233)
                      +-.||| ||+++|+++ ++.|.+|+++..   ..  .++ +|...|.+++|+|++..+++++..++ .|++||..+++..
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~---~~--~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT---YV--LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS---BE--EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC---cE--EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            356999 999999987 579999998632   22  233 69999999999998755544455543 7899999988776


Q ss_pred             eeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe----------CCC
Q 026765          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT----------GNG  171 (233)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~  171 (233)
                      ........+..++|+|+++++++++.++.+.+|++.+.+...... ....+..++|+|+|++++.+.          .++
T Consensus        80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            665566777889999999999999999999999998877665544 345678899999999998654          345


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      .+++|+..+.+.. .+..|...+..++|+|+|++|++++.|+.+++||....
T Consensus       160 ~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         160 AIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ceeeeccccCcee-eecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            6889998876654 34456777889999999999999999999999997654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.1e-21  Score=147.60  Aligned_cols=210  Identities=15%  Similarity=0.159  Sum_probs=158.8

Q ss_pred             eeeeCccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +++. ..+....++|+|+|++| ++++.++.|++||+....    ....+..+. .+..++|++++..+++++..++.+.
T Consensus        26 ~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   99 (301)
T d1l0qa2          26 ATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS   99 (301)
T ss_dssp             EEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----eeeeeeccc-cccccccccccccccccccccceee
Confidence            3444 23457899999999987 567789999999986421    222445554 4678999998877778888899999


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCcEEEEEcCCCeeeeeeec-----------------------
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKF-----------------------  148 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-----------------------  148 (233)
                      +|+..+++.............+.++|++..++. +..+..+.+|+..+.........                       
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             ecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccc
Confidence            999999988877777777788999999998764 55577788888765443322211                       


Q ss_pred             -------------------CceeeEEEECCCCCEEEEEeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE
Q 026765          149 -------------------GYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF  206 (233)
Q Consensus       149 -------------------~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l  206 (233)
                                         ...+..+.++++++.++++..   ++.+.+||..+++....+.. ...+.+++|+|+|++|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l  258 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKV  258 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEE
T ss_pred             cccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEE
Confidence                               112345678888887766543   46899999999888777654 4567999999999986


Q ss_pred             -EEeeCCCcEEEEecCCcEEEEeee
Q 026765          207 -AVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       207 -as~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                       ++++.|+.|+|||+++++++++++
T Consensus       259 ~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCeEEEEEe
Confidence             677889999999999999999885

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.3e-23  Score=159.26  Aligned_cols=200  Identities=11%  Similarity=0.077  Sum_probs=135.2

Q ss_pred             eeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC-cEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765           16 YTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-SVDQLCWDPKHADLIATASGDKTVRL   93 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sg~~d~~i~i   93 (233)
                      ..+|.++|++++|+|++ .+|+||+.|++|++|++.....    ......+.. ......+.+ +...+++++.|+.+++
T Consensus        52 ~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  126 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS----FQALTNNEANLGICRICKY-GDDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS----EEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEE
T ss_pred             ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc----ccccccccccccccccccc-ccccccccccccccce
Confidence            34799999999999875 5899999999999999864321    112223333 333334443 4568889999999999


Q ss_pred             EECCCCeeeeeeee-------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee----------------------
Q 026765           94 WDARSGKCSQQAEL-------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH----------------------  144 (233)
Q Consensus        94 wd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----------------------  144 (233)
                      ||++.+........       ........+.+.+..+++++.|+.+++||++..+...                      
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            99864432111110       0111233445555566666666666666653211000                      


Q ss_pred             ------------------------------e----------eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceee
Q 026765          145 ------------------------------R----------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL  184 (233)
Q Consensus       145 ------------------------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  184 (233)
                                                    .          ..+...+++++|+|+++++++++.||.|++||.++.+.+
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence                                          0          001123678999999999999999999999999999888


Q ss_pred             eEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       185 ~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ..+..+ ..+..++|+|++++|++|+.|+.+++|...
T Consensus       287 ~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         287 KNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             EEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            777543 344567888899999999999999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.3e-21  Score=149.35  Aligned_cols=193  Identities=13%  Similarity=0.106  Sum_probs=135.0

Q ss_pred             CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC--
Q 026765           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE--  110 (233)
Q Consensus        33 ~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~--  110 (233)
                      +++++++.|++|+|||+...  ..+..+....+...+..++|+|++..++++++.++.|.+||+.+++..........  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCC--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            57999999999999999752  22333334445566788999998766667888899999999999987766554322  


Q ss_pred             ----eeEEEECCCCCeEEEEcC------------CCcEEEEEcCCCeeeeeeecCceeeEEE------------------
Q 026765          111 ----NINITYKPDGTHIAVGNR------------DDELTILDVRKFKPIHRRKFGYEVNEIA------------------  156 (233)
Q Consensus       111 ----~~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~------------------  156 (233)
                          ...++++|++++++++..            +..+.+||..+.+..........+..+.                  
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  159 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM  159 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCccee
Confidence                235889999998877653            3456666654433322222222222222                  


Q ss_pred             --------------------------------------------------------------------------------
Q 026765          157 --------------------------------------------------------------------------------  156 (233)
Q Consensus       157 --------------------------------------------------------------------------------  156 (233)
                                                                                                      
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence                                                                                            


Q ss_pred             --------ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          157 --------WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       157 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                              +++++.+++..  ++.+.+||..+.+.+..+. +...+.+++|+|+|++|++++.|+.|+|||+++++.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence                    33333333322  4567777777777766653 566788999999999999999999999999999999988


Q ss_pred             ee
Q 026765          229 FT  230 (233)
Q Consensus       229 ~~  230 (233)
                      ++
T Consensus       317 i~  318 (337)
T d1pbyb_         317 VD  318 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.1e-21  Score=157.50  Aligned_cols=216  Identities=12%  Similarity=0.107  Sum_probs=146.8

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE-EecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+++..|. .+..++|+|||++|++++.|++|++||+.+........+. ..+|...+.+++|+|++..+++++..++.+
T Consensus        55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            35676664 5899999999999999999999999999764322222211 225666677888999987667777899999


Q ss_pred             EEEECCCCeeeeeeeec------------CCeeEEEECCCCCeEEEEcCC-CcEEEEEcCCCee--eeeeecCceeeEEE
Q 026765           92 RLWDARSGKCSQQAELS------------GENINITYKPDGTHIAVGNRD-DELTILDVRKFKP--IHRRKFGYEVNEIA  156 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~--~~~~~~~~~~~~~~  156 (233)
                      ++||..++.+.......            +....+..++++..++....+ +.+.+++......  +.....+..+..+.
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee
Confidence            99999988765543321            222346677777776655443 5565665544332  22233445567778


Q ss_pred             ECCCCCEEEEEeC-CCeEEEEecCC------------------------------------------------------c
Q 026765          157 WNMTGEMFFLTTG-NGTVEVLTYPS------------------------------------------------------L  181 (233)
Q Consensus       157 ~~~~~~~~~~~~~-~~~v~~~~~~~------------------------------------------------------~  181 (233)
                      +++++++++++.. +..+.+++..+                                                      .
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            8888777655542 23333333221                                                      1


Q ss_pred             eeeeEEeeecCceeEEEECCCCCEEEE-------eeCCCcEEEEecCCcEEEEee
Q 026765          182 RPLDTVVAHTAGCYCIAIDPMGRYFAV-------GSADSLVSLWDISEMLCVRTF  229 (233)
Q Consensus       182 ~~~~~~~~~~~~v~~i~~~p~~~~las-------~s~dg~v~iwd~~~~~~i~~~  229 (233)
                      +....+.+|...+..++|+|++++|++       ++.|++|+|||++++++++++
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            334556778888999999999999994       667899999999988766554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4.9e-20  Score=142.32  Aligned_cols=199  Identities=11%  Similarity=0.049  Sum_probs=138.9

Q ss_pred             EEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 026765           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (233)
Q Consensus        26 ~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~  104 (233)
                      ++|++++++|++++.|++|.|||+.+..  .+.  .++ .|...+..++|+|++..+++++..++.|.+||+.+++....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~--~~~--t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT--VYK--SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE--EEE--EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC--EEE--EEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            4789999999999999999999997531  122  233 35566789999999877778888999999999999887665


Q ss_pred             eeecC-------CeeEEEECCCCCeEEEEcC------------CCcEEEEEcCC--------------------------
Q 026765          105 AELSG-------ENINITYKPDGTHIAVGNR------------DDELTILDVRK--------------------------  139 (233)
Q Consensus       105 ~~~~~-------~~~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~--------------------------  139 (233)
                      .....       .+..++++|||++++++..            +..+.+||..+                          
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            44322       2345788888887766542            34445554321                          


Q ss_pred             ---------------CeeeeeeecC-------------------------------------------------------
Q 026765          140 ---------------FKPIHRRKFG-------------------------------------------------------  149 (233)
Q Consensus       140 ---------------~~~~~~~~~~-------------------------------------------------------  149 (233)
                                     .+.+......                                                       
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence                           1111110000                                                       


Q ss_pred             --------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765          150 --------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (233)
Q Consensus       150 --------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v  215 (233)
                                    ..+..+.+++++.+++... .+.+.+||..+++.+..+. +...+.+++|+|||++|++++.|+.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence                          0011223344444444333 4579999999888877665 55678999999999999999999999


Q ss_pred             EEEecCCcEEEEeee
Q 026765          216 SLWDISEMLCVRTFT  230 (233)
Q Consensus       216 ~iwd~~~~~~i~~~~  230 (233)
                      +|||+++++++++++
T Consensus       316 ~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         316 AVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEECccCCEEEEEE
Confidence            999999999998875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.7e-19  Score=143.67  Aligned_cols=155  Identities=9%  Similarity=-0.033  Sum_probs=111.3

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE-EecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+..| ..+..++|+|||++|++++.|++|++||+.+........+. ..+|...+.+..|+|++..++++++.++.|
T Consensus        55 ~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            3456656 46999999999999999999999999999764432222222 224556677778888887677899999999


Q ss_pred             EEEECCCCeeeeeeee------------cCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeee--eeeecCceeeEEE
Q 026765           92 RLWDARSGKCSQQAEL------------SGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPI--HRRKFGYEVNEIA  156 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~  156 (233)
                      ++||..+++.......            .+....+.++|++..++ +...++.+.+||....+..  .....+..+..+.
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence            9999999877654432            22334578899998765 4556789999998765533  3344455567788


Q ss_pred             ECCCCCEEEEEe
Q 026765          157 WNMTGEMFFLTT  168 (233)
Q Consensus       157 ~~~~~~~~~~~~  168 (233)
                      ++|+|+++++++
T Consensus       214 ~spdg~~~~va~  225 (432)
T d1qksa2         214 LDGSHRYFITAA  225 (432)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             ECCCCCEEEEec
Confidence            888888665444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=3.7e-17  Score=131.13  Aligned_cols=195  Identities=13%  Similarity=0.028  Sum_probs=141.5

Q ss_pred             cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee--eee
Q 026765           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ--AEL  107 (233)
Q Consensus        30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~  107 (233)
                      +++-++++.+.|++|+|||..+..  .  ...++.+ ..+..++|+|++ +++++++.|+.+++||+.+++....  ...
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~--v--~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYE--I--KTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC--E--EEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCc--E--EEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            334456899999999999987532  2  2245555 468999999986 5778899999999999987764332  222


Q ss_pred             cCCee----EEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeec------------CceeeEEEECCCCCEEEEE-eC
Q 026765          108 SGENI----NITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWNMTGEMFFLT-TG  169 (233)
Q Consensus       108 ~~~~~----~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~  169 (233)
                      .....    ...|+|||+++ +++..++.+.+||..+.+.+.....            ......+.++++++.++++ ..
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            22222    34567899986 5677889999999988876654332            1234567889999887654 56


Q ss_pred             CCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeC-CCcEEEEecCCcEEEEeee
Q 026765          170 NGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~~~~i~~~~  230 (233)
                      ++.+.+|+..+.+...... .+...+..++|+|+|+++++++. ++.+.++|...++.+..+.
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            7999999988766544332 45667889999999998877775 5679999999988877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=4.7e-16  Score=117.52  Aligned_cols=189  Identities=16%  Similarity=0.203  Sum_probs=148.5

Q ss_pred             EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEE
Q 026765           36 ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT  115 (233)
Q Consensus        36 ~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  115 (233)
                      ++++.|++|+|||+++.  ..+.  +++ .......++|+|++..++++++.++.|++||+.+++....+........+.
T Consensus         6 V~~~~~~~v~v~D~~t~--~~~~--~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN--KVTA--TIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EEETTTTEEEEEETTTT--EEEE--EEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EEECCCCEEEEEECCCC--eEEE--EEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccc
Confidence            56778999999998653  2222  233 234578899999987666788889999999999999888777777778899


Q ss_pred             ECCCCCeEEE-EcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCceeeeEEeeecCc
Q 026765          116 YKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAHTAG  193 (233)
Q Consensus       116 ~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~  193 (233)
                      +++++..+++ +..++.+.+|+..+.+.............+.++++++.++... .++.+.+|+..+.+....+.. ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRS  159 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSS
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCC
Confidence            9999987665 5566789999999888877777666788899999999886654 578899999988887776654 445


Q ss_pred             eeEEEECCCCCEEEEeeCC-CcEEEEecCCcEEEEeee
Q 026765          194 CYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       194 v~~i~~~p~~~~las~s~d-g~v~iwd~~~~~~i~~~~  230 (233)
                      +..++++|+++++++++.+ +.+.+|+....+....+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK  197 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ceEEEeeccccceeeecccccccccccccceeeeeccc
Confidence            7899999999988777765 678888888777766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.4e-16  Score=120.98  Aligned_cols=214  Identities=11%  Similarity=0.104  Sum_probs=135.2

Q ss_pred             eeCccccEEEEEECcCCCEEEEE-eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~-~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      ...|.+.|..|+|+|||++|+++ ..|+.|++|++..... .........+...+..++|+|++..+++++..++.+.+|
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~-~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            34688999999999999998554 5689999999875332 222222223445567899999875544444457789999


Q ss_pred             ECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeee-------ecC--------------
Q 026765           95 DARSGKCSQQAE---LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRR-------KFG--------------  149 (233)
Q Consensus        95 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-------~~~--------------  149 (233)
                      +...........   ....+..+.++|++++++++.. +..+.+|+..........       ..+              
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            887665433322   2234456889999998877664 456777775432100000       000              


Q ss_pred             ---------------------------------------ceeeEEEECCCCCEEEEE-eCCCeEEEEecCCceeeeEE--
Q 026765          150 ---------------------------------------YEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPLDTV--  187 (233)
Q Consensus       150 ---------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~--  187 (233)
                                                             .....+.++++++++++. ..++.+.+|+.........+  
T Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         191 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE
Confidence                                                   012235677788766555 45678888887644333332  


Q ss_pred             -eeecCceeEEEECCCCCEEEEee-CCCcEEEEec--CCcE--EEEeee
Q 026765          188 -VAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SEML--CVRTFT  230 (233)
Q Consensus       188 -~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~--~~~~--~i~~~~  230 (233)
                       ......+..++|+|+|++|++++ .++.|+||++  ++|.  .+..++
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEecc
Confidence             23445677899999999876655 5689999954  5654  344443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=2.2e-16  Score=126.16  Aligned_cols=193  Identities=13%  Similarity=0.065  Sum_probs=135.7

Q ss_pred             CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee--cC
Q 026765           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL--SG  109 (233)
Q Consensus        32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--~~  109 (233)
                      +-++++++.|++|+|||+.+..  .+  ..++.| ..+..++|+|++ +++++++.|+.|++||+.+++.......  ..
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~--~~--~~l~~g-~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKK--IV--KVIDTG-YAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCS--EE--EEEECC-SSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             eEEEEEEcCCCEEEEEECCCCc--EE--EEEeCC-CCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            3356888999999999987532  22  245555 468999999986 5778999999999999998875443322  11


Q ss_pred             C----eeEEEECCCCCeEEEE-cCCCcEEEEEcCCCeeeeeeec------------CceeeEEEECCCCCEEEEEeC-CC
Q 026765          110 E----NINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWNMTGEMFFLTTG-NG  171 (233)
Q Consensus       110 ~----~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~  171 (233)
                      .    ..+++|+|||++++++ ..++.+.+||............            ......+..++++..++.... .+
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            1    2345677899987655 4789999999988766544332            112345666777777666544 45


Q ss_pred             eEEEEecCCceee-eEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEeee
Q 026765          172 TVEVLTYPSLRPL-DTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       172 ~v~~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+.+++....... .....+...+..++++|+++++.++. .+..+.+++..++..+..+.
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            6666665544322 23446778889999999999877766 55779999999999887664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=7.2e-15  Score=114.62  Aligned_cols=214  Identities=9%  Similarity=-0.003  Sum_probs=140.6

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEe----------CCCCEEEEecccCCCC--------------------------c-e
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGS----------VDQTARVWHIEPHGHG--------------------------K-V   57 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~----------~D~~v~vW~~~~~~~~--------------------------~-~   57 (233)
                      ++..+..+  .++|+|||++|++++          .|+.|++||.......                          + .
T Consensus        62 ~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  139 (373)
T d2madh_          62 HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             EEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence            34444433  789999999998875          3578999997642210                          0 0


Q ss_pred             eeE----------------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-----C--eeEE
Q 026765           58 KDI----------------ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-----E--NINI  114 (233)
Q Consensus        58 ~~~----------------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-----~--~~~~  114 (233)
                      ...                +...+.....++.++|++...+++.+.|+.+.+||...+..........     .  ....
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (373)
T d2madh_         140 LFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             EEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence            000                0112223345677888887788899999999999998876554432211     1  1234


Q ss_pred             EECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-------------CceeeEEEECCCCCEE----------EEEeCCC
Q 026765          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-------------GYEVNEIAWNMTGEMF----------FLTTGNG  171 (233)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----------~~~~~~~  171 (233)
                      .+.+++.. +..+.++.+.+|+............             ......+.+++++..+          +....++
T Consensus       220 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  298 (373)
T d2madh_         220 QANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             EECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence            45555544 4556678888888765543221111             0112334556655544          3455677


Q ss_pred             eEEEEecCCceeeeEEeeecCceeEEEECCCCCE--EEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY--FAVGSADSLVSLWDISEMLCVRTFTKL  232 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--las~s~dg~v~iwd~~~~~~i~~~~~~  232 (233)
                      .+.+||..+++.+..+. +...+..++|+|||+.  +++++.|+.|+|||+.+++.++++..+
T Consensus       299 ~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         299 EVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             eEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            89999998888877654 6677899999999984  578999999999999999999998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.2e-15  Score=115.71  Aligned_cols=205  Identities=12%  Similarity=0.084  Sum_probs=134.2

Q ss_pred             EEEEECcCCCEEEEE----------eCCCCEEEEecccCCCCceeeEEEe-cC----cCcEEEEEEcCCCCCEEEE-EeC
Q 026765           24 HSVAWNCTGTKLASG----------SVDQTARVWHIEPHGHGKVKDIELR-GH----ADSVDQLCWDPKHADLIAT-ASG   87 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~----------~~D~~v~vW~~~~~~~~~~~~~~~~-~h----~~~v~~~~~~~~~~~~l~s-g~~   87 (233)
                      ..++|+|||++|+.+          +.|+.|++||+....  ....+... .+    ......++|+|++..+++. .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            368999999988764          348899999986532  11222111 11    1223457899987544432 245


Q ss_pred             CCeEEEEECCCCeeeeeeeecC--------Cee--------------------------------------EEEECCCCC
Q 026765           88 DKTVRLWDARSGKCSQQAELSG--------ENI--------------------------------------NITYKPDGT  121 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~~~~~~~--------~~~--------------------------------------~~~~~~~~~  121 (233)
                      +..+.+||..+++.........        ...                                      ...+.+++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  207 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCC
Confidence            6788999998876543322111        000                                      123444555


Q ss_pred             eEEEEcCCCcEEEEEcCCCeeeee--eec-----------CceeeEEEECCCCCEEEEEeCC----------CeEEEEec
Q 026765          122 HIAVGNRDDELTILDVRKFKPIHR--RKF-----------GYEVNEIAWNMTGEMFFLTTGN----------GTVEVLTY  178 (233)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~  178 (233)
                      .++.+..++.+.+|++...+....  ...           ......+++++++..++....+          ..+.+||.
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            667777788888888765432111  100           0112457888999988776543          47899999


Q ss_pred             CCceeeeEEeeecCceeEEEECCCCC--EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765          179 PSLRPLDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~i~~~p~~~--~las~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      .+++.+..+. +...+.+++|+|+|+  ++++++.|+.|+|||+++++.++++..
T Consensus       288 ~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         288 KTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            9888877765 345678999999997  456778899999999999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=3.1e-15  Score=114.51  Aligned_cols=148  Identities=12%  Similarity=0.076  Sum_probs=119.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeeecC---CeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeeeecC------
Q 026765           80 DLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFG------  149 (233)
Q Consensus        80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~------  149 (233)
                      +++++++.|++|+|||+.+++....+....   .+..++|+|||++++ +++.++.|.+||+.+.+.+......      
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            478899999999999999999887776532   346799999999874 6678899999999998877655432      


Q ss_pred             ceeeEEEECCCCCEEEEEe------------CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEE
Q 026765          150 YEVNEIAWNMTGEMFFLTT------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL  217 (233)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~i  217 (233)
                      ..+..++++|++++++++.            .+..+.+||..+.+....+. +...+..++++|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cce
Confidence            2345789999999988775            46788899998888777665 34567889999999999988755  788


Q ss_pred             EecCCcEEEEeee
Q 026765          218 WDISEMLCVRTFT  230 (233)
Q Consensus       218 wd~~~~~~i~~~~  230 (233)
                      ||...++.++++.
T Consensus       159 ~d~~~~~~~~~~~  171 (337)
T d1pbyb_         159 MDPEAGTLVEDKP  171 (337)
T ss_dssp             EETTTTEEEEEEC
T ss_pred             eeeecCcEEEEee
Confidence            9999998888764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.3e-14  Score=107.59  Aligned_cols=186  Identities=13%  Similarity=0.196  Sum_probs=129.9

Q ss_pred             EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee----eeeeecC
Q 026765           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS----QQAELSG  109 (233)
Q Consensus        34 ~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~----~~~~~~~  109 (233)
                      .+++++.|++|+||+++..+  .....+...|...+..++|+|++..+++++..|+.|++|++......    .......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~--~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG--ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCC--CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            45788899999999997532  23334444688899999999997666567777999999998765422    2222334


Q ss_pred             CeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeeee---cCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCceee
Q 026765          110 ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPL  184 (233)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  184 (233)
                      .+..++|+|||+++++++. ++.+.+|+...........   ....+..+.+++++++++.++ .+..+.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            5667999999999988875 5678888876654433222   234567789999999888776 4567888887654322


Q ss_pred             eEE------eeecCceeEEEECCCCCEEEEee-CCCcEEEEecC
Q 026765          185 DTV------VAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS  221 (233)
Q Consensus       185 ~~~------~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~  221 (233)
                      ...      .........++|++++.++.... ..+...+|+..
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~  207 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  207 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeec
Confidence            211      12334567899999998876554 55677787754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=9.1e-14  Score=108.54  Aligned_cols=203  Identities=11%  Similarity=0.023  Sum_probs=126.5

Q ss_pred             EEEECcCCCEEEEEe----------CCCCEEEEecccCCCCceeeEEEecC-----cCcEEEEEEcCCCCCEEEEEeCCC
Q 026765           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGDK   89 (233)
Q Consensus        25 ~~~~~~~~~~l~s~~----------~D~~v~vW~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~sg~~d~   89 (233)
                      .++|+|||+.|+.++          .|++|++||.....  .+..+.++.+     ......++|+|++..++++...++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            588999999887754          47889999986422  2222222211     112235889999877666656789


Q ss_pred             eEEEEECCCCeeeeeeeecCC--------eeEEEECCCCCeEEEEcCC--------------------------------
Q 026765           90 TVRLWDARSGKCSQQAELSGE--------NINITYKPDGTHIAVGNRD--------------------------------  129 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~d--------------------------------  129 (233)
                      .+.+||+.+++..........        ..-+.+++|+..++....+                                
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            999999998876665443221        1123444555444333222                                


Q ss_pred             ----CcEEEEEcCCCeeeeeeecC-------------ceeeEEEECCCCCEEEEEeCC---------CeEEEEecCCcee
Q 026765          130 ----DELTILDVRKFKPIHRRKFG-------------YEVNEIAWNMTGEMFFLTTGN---------GTVEVLTYPSLRP  183 (233)
Q Consensus       130 ----~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~  183 (233)
                          +.+.++++............             .....++++++++.+++...+         ..+.+||..+++.
T Consensus       227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~  306 (368)
T d1mdah_         227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT  306 (368)
T ss_dssp             ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred             EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE
Confidence                12222332221111100000             012346778888776655322         3588999998887


Q ss_pred             eeEEeeecCceeEEEECCCCC--EEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       184 ~~~~~~~~~~v~~i~~~p~~~--~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      +..+. +...+.+++|+|||+  .+++++.|+.|+|||..+++.+++++
T Consensus       307 ~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         307 SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            77665 345688999999997  35677789999999999999999875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=2e-13  Score=104.58  Aligned_cols=156  Identities=11%  Similarity=0.107  Sum_probs=117.7

Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeeeec
Q 026765           72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKF  148 (233)
Q Consensus        72 ~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~  148 (233)
                      ++++++ .+++++++.|++|.+||+.+++........  ..+..++|+|||++++ ++..++.|.+||+.+.+.+.....
T Consensus         2 ~a~~~~-~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCC-CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            356765 468899999999999999999988876653  3456899999999875 556789999999999887765543


Q ss_pred             C-------ceeeEEEECCCCCEEEEEe------------CCCeEEEEecCCceeeeEEeee--cCceeEEEECCCCCEEE
Q 026765          149 G-------YEVNEIAWNMTGEMFFLTT------------GNGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFA  207 (233)
Q Consensus       149 ~-------~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~la  207 (233)
                      .       ..+..++++++|++++++.            .++.+.+|+..+++....+..+  ...+..+.++++++.++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            2       1356789999999987765            4677888888776654444333  34566777888887766


Q ss_pred             EeeCCCcEEEEecCCcEEEEeeec
Q 026765          208 VGSADSLVSLWDISEMLCVRTFTK  231 (233)
Q Consensus       208 s~s~dg~v~iwd~~~~~~i~~~~~  231 (233)
                      ++   +.+.+||+.+++.++++..
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~  181 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVALPL  181 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEECS
T ss_pred             eC---CcceEEEccCCCEEEEEec
Confidence            53   5589999999988887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=5.2e-12  Score=98.08  Aligned_cols=185  Identities=9%  Similarity=-0.015  Sum_probs=125.6

Q ss_pred             eeCccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEe--cCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELR--GHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      ...|.....++.|+|+++.+ ++.+.|+++.+|+...............  ++......+.+.++  ..++..+.++.+.
T Consensus       160 ~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~  237 (373)
T d2madh_         160 DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS--GRIVWPVYSGKIL  237 (373)
T ss_pred             EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC--ceEEEecCCceEE
Confidence            34556667789999999765 6888999999999764322111111111  11112233445443  3455677889999


Q ss_pred             EEECCCCeeeeeeee-------------cCCeeEEEECCCCCeE----------EEEcCCCcEEEEEcCCCeeeeeeecC
Q 026765           93 LWDARSGKCSQQAEL-------------SGENINITYKPDGTHI----------AVGNRDDELTILDVRKFKPIHRRKFG  149 (233)
Q Consensus        93 iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l----------~~~~~d~~i~i~d~~~~~~~~~~~~~  149 (233)
                      +|+............             ......+++++++..+          +....++.+.+||+.+.+.+.....+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~  317 (373)
T d2madh_         238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG  317 (373)
T ss_pred             EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC
Confidence            999877643221111             1112234555555544          34455678899999998888888888


Q ss_pred             ceeeEEEECCCCCE--EEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC
Q 026765          150 YEVNEIAWNMTGEM--FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM  202 (233)
Q Consensus       150 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~  202 (233)
                      ..+..+.|+|||+.  ++++..++.+++||..+++.+..+..+......+++.++
T Consensus       318 ~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            88999999999985  456788999999999999999999888888888887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=1.2e-11  Score=99.40  Aligned_cols=109  Identities=9%  Similarity=0.117  Sum_probs=78.5

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC---------CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV---------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~---------D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   84 (233)
                      ..+..|...|.++.|||||++|+.++.         ++.+.|||+....     ...+..|...+..+.|+|++..+ +.
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-----~~~l~~~~~~~~~~~~SPDG~~i-a~  128 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-----LITEERIPNNTQWVTWSPVGHKL-AY  128 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-----ECCSSCCCTTEEEEEECSSTTCE-EE
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-----ccccccCCccccccccccCccee-eE
Confidence            456677889999999999999998753         5678899986431     22456788899999999997654 44


Q ss_pred             EeCCCeEEEEECCCCeeeeeeeec-------------------CCeeEEEECCCCCeEEEEcCC
Q 026765           85 ASGDKTVRLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRD  129 (233)
Q Consensus        85 g~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d  129 (233)
                       ..++.+.+|+..+++..+.....                   +....+.|+|||++|+....|
T Consensus       129 -~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         129 -VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             -EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             -eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence             35778999999887654332111                   112347799999999876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=3.3e-11  Score=92.64  Aligned_cols=190  Identities=11%  Similarity=-0.030  Sum_probs=123.2

Q ss_pred             EEEEECcCCCEEEEE-----eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE---------EeCCC
Q 026765           24 HSVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT---------ASGDK   89 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~-----~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s---------g~~d~   89 (233)
                      .-.+.+||+++++..     ..+.+|.+||....   .. ...+..+..  ..++|+|++..++++         +..|+
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~-~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RV-IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EE-EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cE-EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            334567999988664     34667999998642   22 123444433  368999998766544         24578


Q ss_pred             eEEEEECCCCeeeeeeeecC--------CeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCce--------
Q 026765           90 TVRLWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYE--------  151 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~--------  151 (233)
                      .|++||..+++.........        ....++|+|+++++++..  .+..+.+|+..+.+.+........        
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence            99999999988766544321        224589999999887764  456789999988877665543221        


Q ss_pred             eeEEEECCCCCEEEEEe-CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          152 VNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ...+.++++++.++... .++.+.+++....+.     .+...+....+++++..++.++.++.+++|++..+.
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence            22345566666555443 334444444332221     123345566788888899999999999999998764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=1e-10  Score=92.32  Aligned_cols=186  Identities=13%  Similarity=0.058  Sum_probs=123.9

Q ss_pred             EEEEeCCCCEEEEecccCCCCceeeE----------------------------EEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765           35 LASGSVDQTARVWHIEPHGHGKVKDI----------------------------ELRGHADSVDQLCWDPKHADLIATAS   86 (233)
Q Consensus        35 l~s~~~D~~v~vW~~~~~~~~~~~~~----------------------------~~~~h~~~v~~~~~~~~~~~~l~sg~   86 (233)
                      ++|++.+|.|+||++....  .+..+                            ....|.-........|+|..++++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r--~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMR--ELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTE--EEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCc--EEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            6788899999999974321  01100                            00113334455556788776767778


Q ss_pred             CCCeEEEEECCCCeeeeeeee--cCCeeEEEECCCCCe--EEEEcCCC-----------------cEEEEEcCCCeeeee
Q 026765           87 GDKTVRLWDARSGKCSQQAEL--SGENINITYKPDGTH--IAVGNRDD-----------------ELTILDVRKFKPIHR  145 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~--l~~~~~d~-----------------~i~i~d~~~~~~~~~  145 (233)
                      .+.+|.++|+.+.++......  ...+-.++|+|+++.  ++..+++.                 .+..+|..+.+...+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            899999999999987776554  345567999999984  44444332                 235578887777777


Q ss_pred             eecCceeeEEEECCCCCEEEEEeCCC-----------------------------------------eEEEEecCCceee
Q 026765          146 RKFGYEVNEIAWNMTGEMFFLTTGNG-----------------------------------------TVEVLTYPSLRPL  184 (233)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~v~~~~~~~~~~~  184 (233)
                      ...+.....+.++|+|+++++++.+.                                         .+.++.....+.+
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            77666788899999999988876442                                         2222222333333


Q ss_pred             eEEeeecCceeEEEECCCCCEE-EEeeCCCcEEEEecCCc
Q 026765          185 DTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEM  223 (233)
Q Consensus       185 ~~~~~~~~~v~~i~~~p~~~~l-as~s~dg~v~iwd~~~~  223 (233)
                      ..+... .....+.++|||+++ +++..+++|.|||+.+.
T Consensus       252 ~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         252 RYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             EEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence            444333 335679999999986 56778999999998754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=1.3e-10  Score=91.78  Aligned_cols=201  Identities=14%  Similarity=0.099  Sum_probs=133.5

Q ss_pred             CccccEEEEEECcCCCEEEEE-eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE-----
Q 026765           18 GHKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV-----   91 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~-~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i-----   91 (233)
                      .|........++|||++|+.. ..+..|.++|+.....  ...+++ .+......++|+|++....+.+..+..+     
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~--~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT--DKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE--EEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE--eeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            466667777788999998555 5789999999875321  122222 3567889999999876544444433333     


Q ss_pred             -------------EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC----------------------------
Q 026765           92 -------------RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD----------------------------  130 (233)
Q Consensus        92 -------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----------------------------  130 (233)
                                   ..+|..+.+...+....+....+.++|+|+++++.+.+.                            
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                         447777766666666666677899999999988776542                            


Q ss_pred             -------------cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE-eCCCeEEEEecCCcee--------eeEEe
Q 026765          131 -------------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRP--------LDTVV  188 (233)
Q Consensus       131 -------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--------~~~~~  188 (233)
                                   .+.+++....+.+..+..+.....+.++|||++++++ ..++++.+||+...+.        ...+.
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                         1112222222223333334445678999999988665 5689999999854321        11222


Q ss_pred             eec---CceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765          189 AHT---AGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (233)
Q Consensus       189 ~~~---~~v~~i~~~p~~~~las~s~dg~v~iwd~~  221 (233)
                      ++.   -.....+|+++|..+.+...|..|..|++.
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            222   224557899999999999999999999975

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.7e-08  Score=74.39  Aligned_cols=212  Identities=15%  Similarity=0.153  Sum_probs=124.2

Q ss_pred             ceeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765           13 SREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (233)
Q Consensus        13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i   91 (233)
                      .+.+..+.+.+..-+|||||++||-... ++...+|........   ...+..+........|+|++..+++....++..
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  107 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---eeEEeeeecccccceecCCCCeeeEeeecCCcc
Confidence            3455567788889999999999976543 444445544332221   223445677888899999987666655555444


Q ss_pred             EEEE--CCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           92 RLWD--ARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        92 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                      .++.  ....................+++++..+.. ...++.  +...++...................|+|+++.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         108 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             ceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEE
Confidence            4433  222222222222233344566777766554 344444  45555544433222223345666789999999887


Q ss_pred             EeCC-CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC---CCcEEEEecCCcEEEE
Q 026765          167 TTGN-GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVR  227 (233)
Q Consensus       167 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~---dg~v~iwd~~~~~~i~  227 (233)
                      ...+ +...++.............+........|+|||++|+-.+.   ...+.+++++.+...+
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             EeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            6543 44444443322222233345556677899999999875553   3468899998665443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.14  E-value=3.2e-10  Score=90.91  Aligned_cols=146  Identities=18%  Similarity=0.283  Sum_probs=103.0

Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec------CCeeEEEECCCCCeEEEEcC---------CCcEEEE
Q 026765           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS------GENINITYKPDGTHIAVGNR---------DDELTIL  135 (233)
Q Consensus        71 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~---------d~~i~i~  135 (233)
                      .+.|.+++ .++.  ..|+.+.+||+.+++....+...      ..+.++.|+||+++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d~-~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDH-EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSS-EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCC-EEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            46788765 4554  35788999999998765433321      23567899999999987753         4568899


Q ss_pred             EcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeee------------------cCceeEE
Q 026765          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH------------------TAGCYCI  197 (233)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~~~v~~i  197 (233)
                      |+.+.+..........+....|+|+|+.++.. .++.+.+++...++.......+                  ......+
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            99987765444455568889999999999985 5668999988776554332211                  1223567


Q ss_pred             EECCCCCEEEEeeCCCc-EEEEec
Q 026765          198 AIDPMGRYFAVGSADSL-VSLWDI  220 (233)
Q Consensus       198 ~~~p~~~~las~s~dg~-v~iwd~  220 (233)
                      .|||||++||....|.. +..|.+
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEE
T ss_pred             EECCCCCccceeEecCCcCceEEE
Confidence            89999999999886643 555543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=1.6e-07  Score=72.69  Aligned_cols=157  Identities=8%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeee--ee---ecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCC
Q 026765           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQ--AE---LSGENINITYKPDGTHIAVGN-RDDELTILDVRK  139 (233)
Q Consensus        67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~~~~--~~---~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~  139 (233)
                      ..+.++.|+|++..++++......|.+|+.... .....  ..   ....+..++|+|+++++.+.. .++.|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            357899999998666666555678888876543 22211  11   123456799999999886554 568899999755


Q ss_pred             Ceeee-----eeec---------------CceeeEEEECCCCCEEEEEeC------CCeEEEEecCCceeeeE---E---
Q 026765          140 FKPIH-----RRKF---------------GYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRPLDT---V---  187 (233)
Q Consensus       140 ~~~~~-----~~~~---------------~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~---~---  187 (233)
                      .....     ....               ......+.++|+|++++++..      .+.+..+.......+..   +   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            33211     1110               012456889999999887743      23366666543221111   1   


Q ss_pred             eeecCceeEEEECC-CCCEEEEe-eCCCcEEEEecCCc
Q 026765          188 VAHTAGCYCIAIDP-MGRYFAVG-SADSLVSLWDISEM  223 (233)
Q Consensus       188 ~~~~~~v~~i~~~p-~~~~las~-s~dg~v~iwd~~~~  223 (233)
                      .........++++| +|++|+.+ ..++.|.||+++..
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            11234567899998 78987655 56799999987644

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=2.3e-08  Score=73.78  Aligned_cols=196  Identities=12%  Similarity=0.084  Sum_probs=124.7

Q ss_pred             EEEEEECcCCCEEEEE-eCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765           23 VHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~-~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~  101 (233)
                      =+.|+++++|+..++. +..+.+..++....  . .......+ ......+++++++ +++++....+.+++++-.+...
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~--~-~~~~~~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGST--G-TTVLPFNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC------C-EEECCCCS-CCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCE
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc--e-EEEeccCC-ccCceEEEEcCCC-CEEEeeeeeceeeeeeecccee
Confidence            3689999999966654 45566766655321  1 11111111 1234567888875 6777777677777776555443


Q ss_pred             eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC
Q 026765          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (233)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  180 (233)
                      ......-..+..+++.++++++++-..+..+..++.......... ........+++.++++.+++...++.+..++.+.
T Consensus        91 ~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          91 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            333222344567999999988877777777777776543322211 1113456788999999888888888999998764


Q ss_pred             ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       181 ~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ................++++++|+++++....+.|..++....
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            3322222233455688999999999888888888888877543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=1e-07  Score=71.78  Aligned_cols=193  Identities=12%  Similarity=0.011  Sum_probs=128.8

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-  100 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-  100 (233)
                      .+..++++|||+++++...+++|..|+..  .  ..  ..+......+..++|.+++ +++++...++.+..++..... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g--~~--~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD--G--NQ--QIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--C--CE--EEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC--C--CE--EEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEeccccc
Confidence            47789999999999999999988777643  2  11  2334456788999999986 577888788888887765432 


Q ss_pred             -eeeeeee--cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----------CceeeEEEECCCCCEEEE
Q 026765          101 -CSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----------GYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus       101 -~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  166 (233)
                       .......  ......+.+.++++++++...++.+..+|............           ....+.+.+.. +..+++
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~  180 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS  180 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence             2121111  23345688999999888888888888888765432211110           01234555542 334555


Q ss_pred             EeCCCeEEEEecCCceeee--EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          167 TTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       167 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ...++.+..++........  ...........++++++|+++++...++.|..++...
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            6778888888875432221  1222344566799999999988888899999998763

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.01  E-value=1.3e-07  Score=71.69  Aligned_cols=196  Identities=11%  Similarity=0.117  Sum_probs=120.6

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeC--------------
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG--------------   87 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~--------------   87 (233)
                      -..++|+++++.|+.+.....+...+.+.... .+......+.. ...+.+++.+++ .+.++-..              
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceecc
Confidence            35689999999888887767777776542110 00000001111 135678898875 56555321              


Q ss_pred             -CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCC----eE-EEEcCCCcEEEEEcCCCeeeeeee----c----Cceee
Q 026765           88 -DKTVRLWDARSGKCSQQAELSGENINITYKPDGT----HI-AVGNRDDELTILDVRKFKPIHRRK----F----GYEVN  153 (233)
Q Consensus        88 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~l-~~~~~d~~i~i~d~~~~~~~~~~~----~----~~~~~  153 (233)
                       ++.|..++.. ++.......-.....++|+|+++    .| ++.+..+.|..||+.....+....    .    .....
T Consensus       151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence             2233333332 22222221112234578877664    34 455677888888875432222111    1    11355


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecC
Q 026765          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDIS  221 (233)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~  221 (233)
                      .+++..+|+++++....+.|.+|+.+..+....+......+.+++|.|+++ .+++.+.+|.|...++.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            789999999998888899999999877776666666667789999999987 55677778888888864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=6e-09  Score=80.61  Aligned_cols=197  Identities=10%  Similarity=-0.058  Sum_probs=115.9

Q ss_pred             ccccEEEEEECcCCCEE---EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEE---------e
Q 026765           19 HKKKVHSVAWNCTGTKL---ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA---------S   86 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l---~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg---------~   86 (233)
                      +.++...++..++++..   +++..+++.++|-++.... .... .+.++...  .++|+|++..+.++.         +
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~-~~~~-~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG-VTLG-HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT-EEEE-EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC-cEEE-EEeCCCCC--cceECCCCCEEEEEcccCccccccc
Confidence            45555566677788752   3456677777665543322 2222 23344333  478999976554432         3


Q ss_pred             CCCeEEEEECCCCeeeeeeeecC--------CeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeeeeeeecCceeeEEEE
Q 026765           87 GDKTVRLWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (233)
Q Consensus        87 ~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (233)
                      .|+.|++||..+++.......+.        ....++|+|||++++++. .++.+.+||+.+.+.+...........  .
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~  171 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--H  171 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--E
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--c
Confidence            47889999999988776654321        223589999999998776 468999999998887766543221110  1


Q ss_pred             CCCCCEEEEEeCCCeEEEEecCCceeeeE------EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDT------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (233)
Q Consensus       158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~  223 (233)
                      ......++..+.||.+.+++.........      +..+...+..+.+++++..+.+.  ++.+.+++....
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~  241 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAA  241 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSS
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCC
Confidence            11223445556667666666543322111      11233344567778877666544  345556665443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=2.4e-07  Score=68.05  Aligned_cols=192  Identities=10%  Similarity=0.028  Sum_probs=121.8

Q ss_pred             EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (233)
Q Consensus        23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~  102 (233)
                      .+.++++++++..++....+.+++++-..   .  ..............+++.+++ +++++-..+..+..++.......
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~---~--~~~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSN---N--QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCS---C--CEECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCE
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeecc---c--eeeeeeeeeeecccccccccc-eeEeeccccccccccccccceee
Confidence            45778889998888777666666654321   1  111111223456789998865 56666566667777776544321


Q ss_pred             ee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC
Q 026765          103 QQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (233)
Q Consensus       103 ~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  180 (233)
                      .. ...-.....+++.++++.+++...++.+..+|.......... ........+++.++|+++++-..++.+..++...
T Consensus       133 ~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             ECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             eeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            11 111234457899999998888888888999997654333221 1123467889999999888888888888887543


Q ss_pred             ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (233)
Q Consensus       181 ~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~  220 (233)
                      ..........-.....|+++++|+++++-..++.|+.++.
T Consensus       213 ~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         213 TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             SCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            3221111122245678999999988887676776665554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=4.7e-06  Score=62.90  Aligned_cols=205  Identities=9%  Similarity=0.039  Sum_probs=122.4

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC----CeEEEEE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KTVRLWD   95 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d----~~i~iwd   95 (233)
                      ...+-.++|+++|++.++-..++.|..|+.+..   .... .+.........+++++++ +++++...+    +.+...+
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~---~~~~-~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIKR-PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEE-EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEEC
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCC---eEEE-EEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEc
Confidence            334568999999998787777888877776431   1111 223344567889999976 566554332    2344444


Q ss_pred             CCCCeeeeeeee---cCCeeEEEECCCCCeEEEEcCC------CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765           96 ARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (233)
Q Consensus        96 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (233)
                      ............   ......+.+.++|+..++....      +.+..++............-...+.++|+++++.+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence            444333222211   1123458899999876654321      2244444332221111111123578999999986654


Q ss_pred             E-eCCCeEEEEecCCc-eee---eEE-e---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          167 T-TGNGTVEVLTYPSL-RPL---DTV-V---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       167 ~-~~~~~v~~~~~~~~-~~~---~~~-~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      + ...+.|..|++... ...   ... .   ........++++++|+++++...++.|.+||. +++.+.++.
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            4 66889999987532 111   111 1   11123457999999999898889999999996 588777653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.88  E-value=2.9e-07  Score=71.11  Aligned_cols=157  Identities=14%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             cEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceee---EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765           22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKD---IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~   97 (233)
                      -++++.|+|+|+++++++. ...|.+|+....  .....   ..........+.++|+|++..+.++.-.+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS--GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCC--CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            4789999999999888764 456777775432  22111   11222345678899999987666777788999999986


Q ss_pred             CCeeee-----eeeec---------------CCeeEEEECCCCCeEEEEcC-C-----CcEEEEEcCCCeeeeeee----
Q 026765           98 SGKCSQ-----QAELS---------------GENINITYKPDGTHIAVGNR-D-----DELTILDVRKFKPIHRRK----  147 (233)
Q Consensus        98 ~~~~~~-----~~~~~---------------~~~~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~----  147 (233)
                      .++...     .....               .....+.++|+|++++++.. +     ..+..|++.....+....    
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            653211     11100               01235789999999887643 1     237777765432222111    


Q ss_pred             ---cCceeeEEEECC-CCCEEEEEe-CCCeEEEEecCC
Q 026765          148 ---FGYEVNEIAWNM-TGEMFFLTT-GNGTVEVLTYPS  180 (233)
Q Consensus       148 ---~~~~~~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~  180 (233)
                         .+.....++++| +|++++++. .++.|.+|+...
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence               123456788987 789887774 679999998643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.87  E-value=2.2e-06  Score=64.18  Aligned_cols=194  Identities=12%  Similarity=0.030  Sum_probs=123.2

Q ss_pred             eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      .+....+.+.+++|+++|+++++...++.+.+|+..... .................+++.+++ .++++-+.++.+..+
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLI  139 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccc-cceeeccccCCccccceeEEccCC-CEEeeccccccceee
Confidence            445567789999999999999998888888888875432 222222222344567889999875 677777888888888


Q ss_pred             ECCCCeeeeeeeec-----------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee---ecCceeeEEEECCC
Q 026765           95 DARSGKCSQQAELS-----------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMT  160 (233)
Q Consensus        95 d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~  160 (233)
                      |...+.........           .....+.++. +..+++....+.+..++..........   ........+++.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d  218 (302)
T d2p4oa1         140 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE  218 (302)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred             eccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCC
Confidence            88776532211110           0112344433 234445666778888886543322211   12334567999999


Q ss_pred             CCEEEEEeCCCeEEEEecCCceeeeE--EeeecCceeEEEE---CCCCCEEEEeeCC
Q 026765          161 GEMFFLTTGNGTVEVLTYPSLRPLDT--VVAHTAGCYCIAI---DPMGRYFAVGSAD  212 (233)
Q Consensus       161 ~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~i~~---~p~~~~las~s~d  212 (233)
                      |+++++...++.|..++.. ++....  ....-..+++++|   +||++.|..++..
T Consensus       219 G~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         219 GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            9988888888999988754 332221  2223345789999   6788877655543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.79  E-value=7e-06  Score=61.82  Aligned_cols=206  Identities=8%  Similarity=-0.034  Sum_probs=117.0

Q ss_pred             ccccEEEEEECcCCCEEEEEeC-------CCCEEEEecccCCCCceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765           19 HKKKVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATASGD   88 (233)
Q Consensus        19 H~~~V~~~~~~~~~~~l~s~~~-------D~~v~vW~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d   88 (233)
                      .-...-.++|+++|++.++...       +++|..|+.....   ......   ......-..++|.+++. .++.+...
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~---~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~   91 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMR   91 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSSSS-EEEEEETT
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc---EEEEECCccccCCCcceeEEEeCCCC-EEEEEECC
Confidence            3334567799999998776432       4567677654321   111111   11112356789998764 55566666


Q ss_pred             CeEEEEECCCCeeeeeee-ecC----CeeEEEECCCCCeEEEEcC---------------CCcEEEEEcCCCeeeeeeec
Q 026765           89 KTVRLWDARSGKCSQQAE-LSG----ENINITYKPDGTHIAVGNR---------------DDELTILDVRKFKPIHRRKF  148 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~  148 (233)
                      ..+...|...+....... ..+    ....+++.++|+..++...               .+.+..++... +.......
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~  170 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTA  170 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCC
Confidence            778888876543222111 111    1345889999987776432               12333333321 11111111


Q ss_pred             CceeeEEEECCCCC-----EEEEEeCCCeEEEEecCCc-eee-----eEEee-ecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          149 GYEVNEIAWNMTGE-----MFFLTTGNGTVEVLTYPSL-RPL-----DTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       149 ~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~-~~~-----~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      -...+.++|+++++     ++++-+..+.+..|++... ...     ..+.+ +......++++.+|+.+++....+.|.
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            12346788888765     4455567888888876432 211     11111 112345799999999988888889999


Q ss_pred             EEecCCcEEEEee
Q 026765          217 LWDISEMLCVRTF  229 (233)
Q Consensus       217 iwd~~~~~~i~~~  229 (233)
                      +||.+.++.+.++
T Consensus       251 ~~dp~~g~~~~~i  263 (314)
T d1pjxa_         251 VFGPDGGQPKMRI  263 (314)
T ss_dssp             EECTTCBSCSEEE
T ss_pred             EEeCCCCEEEEEE
Confidence            9998876554443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.74  E-value=1.4e-05  Score=58.99  Aligned_cols=200  Identities=14%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe------cCcCcEEEEEEcCCCCCEEEE-EeCCCeEEEE
Q 026765           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPKHADLIAT-ASGDKTVRLW   94 (233)
Q Consensus        22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s-g~~d~~i~iw   94 (233)
                      .-+.|+++++|+.+++-..++.|++|+.+.    ... ..+.      +....-..+++.++....++. .+.++.|..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G----~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG----RFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS----CEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC----CEE-EEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            357999999999888877889999998642    111 1121      111223445555444444433 3455677778


Q ss_pred             ECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCCCCEEEEEeC
Q 026765           95 DARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus        95 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  169 (233)
                      +.. +.....+...  .....+++.++++.+++....+.+.+++... +.+....   .......+++.++++.+++...
T Consensus        99 ~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_          99 NQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             CTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             ccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc
Confidence            764 4433333222  3345688899999888887778888888543 3333221   1234567788899988888888


Q ss_pred             CCeEEEEecCCceeeeEEe--eecCceeEEEECCCCCEEEEeeC-CCcEEEEecCCcEEEEeee
Q 026765          170 NGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       170 ~~~v~~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~~~~i~~~~  230 (233)
                      .+.+++|+.. ++.+.++.  +.......|+++|+|+.+++-.. ++.|.+|+. +++.++++.
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            9999999864 45555553  23445788999999998877554 457999985 477777764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.7e-05  Score=57.61  Aligned_cols=183  Identities=11%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             eeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765           14 REYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (233)
Q Consensus        14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~   92 (233)
                      +.+..+.+......|+|+|+.++..+. ++...++........   ...............+.+.+...+++...++...
T Consensus        76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          76 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             eEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc---ceeeeeccccccccccccccccceecccccCCce
Confidence            456677888999999999998877654 444444433322111   1122233344455566666655666666666544


Q ss_pred             --EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC-CcEEE--EEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765           93 --LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTI--LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (233)
Q Consensus        93 --iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (233)
                        +.++..+................++|+++.++....+ +...+  .+...... .............|+|||+.|+..
T Consensus       153 i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEE
T ss_pred             EeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEE
Confidence              4555554433332223334457899999998876654 34444  44443322 222223345567899999998755


Q ss_pred             eC---CCeEEEEecCCceeeeEEeeecCceeEEEECC
Q 026765          168 TG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP  201 (233)
Q Consensus       168 ~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p  201 (233)
                      +.   ...+.+++...... ..+......+...+|||
T Consensus       232 s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         232 SSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            43   34667777765443 44555566677889998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=2.8e-05  Score=58.51  Aligned_cols=192  Identities=14%  Similarity=0.094  Sum_probs=114.2

Q ss_pred             CccccEEEEEECcCCCEEEEEeCC--CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC------C
Q 026765           18 GHKKKVHSVAWNCTGTKLASGSVD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------K   89 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~~D--~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d------~   89 (233)
                      ........++|+++|+++++...+  ....++.+............-..-......+++.+++ .+.++-...      +
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g  157 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLG  157 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcc
Confidence            344567789999999887765433  3455555543222111111101112346788999876 455553221      2


Q ss_pred             eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCee-ee---e-ee----cCceeeEEEECC
Q 026765           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKP-IH---R-RK----FGYEVNEIAWNM  159 (233)
Q Consensus        90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~~---~-~~----~~~~~~~~~~~~  159 (233)
                      .+..++...+........-.....++|+|+++.|. +-+..+.|..||+..... ..   . ..    .......+++..
T Consensus       158 ~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         158 GVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  237 (319)
T ss_dssp             EEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             eeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC
Confidence            34444443332222222223345689999998764 556678899998753211 11   0 00    112356789999


Q ss_pred             CCCEEEEEeCCCeEEEEecCCceeeeEEee------ecCceeEEEECCCCCEEEEeeC
Q 026765          160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVA------HTAGCYCIAIDPMGRYFAVGSA  211 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~las~s~  211 (233)
                      +|+++++...++.|.+++. .++.+..+..      +...+.+++|.|.+..+.+.+.
T Consensus       238 ~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         238 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            9999999999999999994 6777766642      3345789999998876655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=5.4e-05  Score=55.69  Aligned_cols=155  Identities=12%  Similarity=0.124  Sum_probs=104.8

Q ss_pred             cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee
Q 026765           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKP  142 (233)
Q Consensus        66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  142 (233)
                      ......+++.+++ .++++....+.+.+++... +....+...   .....+++.++++.+++....+.|.+||... +.
T Consensus       113 ~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~  189 (279)
T d1q7fa_         113 LQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY  189 (279)
T ss_dssp             CSCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE
T ss_pred             ccccceeccccCC-cEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ce
Confidence            3456678888765 5666666677788887643 333333211   2345688899998888888889999999653 33


Q ss_pred             eeeeec---CceeeEEEECCCCCEEEEEeC-CCeEEEEecCCceeeeEEeee--cCceeEEEECCCCCEEEEeeCCCcEE
Q 026765          143 IHRRKF---GYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSADSLVS  216 (233)
Q Consensus       143 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~las~s~dg~v~  216 (233)
                      +.....   ......+++.++|+.+++-.. ++.+.+++ ++++.+..+...  ......|++.|+|.+++ ++.+..|+
T Consensus       190 ~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~  267 (279)
T d1q7fa_         190 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLY  267 (279)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEE
T ss_pred             eeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEE
Confidence            332221   123678899999997776544 45688887 456666665433  23578899999987555 56789999


Q ss_pred             EEecCCcEE
Q 026765          217 LWDISEMLC  225 (233)
Q Consensus       217 iwd~~~~~~  225 (233)
                      +|...+..+
T Consensus       268 ~fr~~~~~~  276 (279)
T d1q7fa_         268 IYRYVQLAP  276 (279)
T ss_dssp             EEECSCCCC
T ss_pred             EEEeeeecC
Confidence            999887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.4e-06  Score=68.01  Aligned_cols=199  Identities=11%  Similarity=0.094  Sum_probs=114.9

Q ss_pred             EEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecC---cCcEEEEEEcCCCCCEEEEE--------eCCCeEEEE
Q 026765           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATA--------SGDKTVRLW   94 (233)
Q Consensus        26 ~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~sg--------~~d~~i~iw   94 (233)
                      ..|.+++.++.. ..||.+.+|++..... .   ..+...   ...+....|+|++..+++..        +..+.+.++
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~-~---~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTS-T---VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCC-E---EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCE-E---EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            368888876654 5578999999875432 1   112222   23567788999876655543        345788999


Q ss_pred             ECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc-------------------ee
Q 026765           95 DARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-------------------EV  152 (233)
Q Consensus        95 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------~~  152 (233)
                      |+.++.........   .......|+|||+.++-.. ++.+.+.+......+.....+.                   .-
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            99887654332221   1122478999999987654 5567777765544332221110                   11


Q ss_pred             eEEEECCCCCEEEEEeC-CCeEEEE---------------------------------ecCCceeeeEEe------eecC
Q 026765          153 NEIAWNMTGEMFFLTTG-NGTVEVL---------------------------------TYPSLRPLDTVV------AHTA  192 (233)
Q Consensus       153 ~~~~~~~~~~~~~~~~~-~~~v~~~---------------------------------~~~~~~~~~~~~------~~~~  192 (233)
                      ..+.|+|||+.|+.... +..+..+                                 ++..........      ....
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            35679999999987642 2323332                                 221111000000      0011


Q ss_pred             ceeEEEECCCCCEEEEee-CC---CcEEEEecCCcEEEEeee
Q 026765          193 GCYCIAIDPMGRYFAVGS-AD---SLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       193 ~v~~i~~~p~~~~las~s-~d---g~v~iwd~~~~~~i~~~~  230 (233)
                      -+..+.|+|++++++... .+   ..+.++|..++.+...+.
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            245688999988665533 23   358899999998765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00011  Score=54.48  Aligned_cols=184  Identities=13%  Similarity=0.087  Sum_probs=115.0

Q ss_pred             cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE-Eec--CcCcEEEEEEcCCCCCEEEEEeC----CCeEE
Q 026765           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRG--HADSVDQLCWDPKHADLIATASG----DKTVR   92 (233)
Q Consensus        20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~~--h~~~v~~~~~~~~~~~~l~sg~~----d~~i~   92 (233)
                      ...+.++++.++|.++++ +.+ -+.++|....   ....+. ...  ....++++.+.|++ .+.++...    .+.-.
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg---~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccc---eeeEEeeeecCCCcccceeeEECCCC-CEEEEecccccccccee
Confidence            556788898888877765 444 4777776542   222111 111  11247788899886 45544322    23445


Q ss_pred             EEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCe------eeeeee---cCceeeEEEECCCCC
Q 026765           93 LWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFK------PIHRRK---FGYEVNEIAWNMTGE  162 (233)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~------~~~~~~---~~~~~~~~~~~~~~~  162 (233)
                      +|.+..++.......-.....++++++++.+. +.+..+.|..+++....      ......   .......++...+|+
T Consensus       132 l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         132 IYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             EEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             EeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            66666665544333333445689999998765 55567788888764211      111111   123467788999999


Q ss_pred             EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC-CCCCEE-EEee
Q 026765          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID-PMGRYF-AVGS  210 (233)
Q Consensus       163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~l-as~s  210 (233)
                      ++++.-..+.|..|+ ++++.+..+.--...+++++|. |+.+.| +|.+
T Consensus       212 lWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         212 IWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            998888889999999 4677777776555678999995 666544 4433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.32  E-value=0.0002  Score=51.83  Aligned_cols=94  Identities=11%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             ECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCe
Q 026765           28 WNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-----TVRLWDARSGK  100 (233)
Q Consensus        28 ~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~  100 (233)
                      .+|+  |+.+|-.+. +.|.+.++..   +..  .++..+...+...+|+|++..+.++...++     .|.+++..+++
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~---g~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKS---GST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTT---CCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCC---CCE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4688  998876653 4444445542   222  245566778889999999876655543332     36667777776


Q ss_pred             eeeeeeec-------CCeeEEEECCCCCeEEEEc
Q 026765          101 CSQQAELS-------GENINITYKPDGTHIAVGN  127 (233)
Q Consensus       101 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~~  127 (233)
                      ..+.....       .......|+|+++.++...
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            54322111       1224578999999887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.20  E-value=0.00047  Score=51.01  Aligned_cols=196  Identities=13%  Similarity=0.052  Sum_probs=120.0

Q ss_pred             EEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765           25 SVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (233)
Q Consensus        25 ~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~  103 (233)
                      ...|++... +..+--..+.|..||....   ......   ....+.++++.+++ .+++ ++.+ .+.++|..+++...
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g---~~~~~~---~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASG---RKTVHA---LPFMGSALAKISDS-KQLI-ASDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEEEE---CSSCEEEEEEEETT-EEEE-EETT-EEEEEETTTCCEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCC---eEEEEE---CCCCcEEEEEecCC-CEEE-EEeC-ccEEeecccceeeE
Confidence            556877554 4444445677877876532   222222   34567788887764 4554 4554 58889998887544


Q ss_pred             eeeecC-----CeeEEEECCCCCeEEEEcCC----CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE-eCCCeE
Q 026765          104 QAELSG-----ENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTV  173 (233)
Q Consensus       104 ~~~~~~-----~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v  173 (233)
                      ......     ....+.+.|+|+..++....    +.-.+|.+...+.......-...+.+.|+++++.++.. +..+.+
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeeccccee
Confidence            332221     13457889999876654322    34456666555433222222245789999999876555 567888


Q ss_pred             EEEecCC--ce----e--eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          174 EVLTYPS--LR----P--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       174 ~~~~~~~--~~----~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..+++..  ..    .  ...+.+.......++++.+|++.++.-..+.|..||. +++.+.+++
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~  236 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  236 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec
Confidence            8887642  11    1  1111122345678999999998887777889999995 577776653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.3e-05  Score=59.64  Aligned_cols=145  Identities=14%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec----CCeeEEEECCCCCeEEEEcC---------CCcEEEEEcCC
Q 026765           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS----GENINITYKPDGTHIAVGNR---------DDELTILDVRK  139 (233)
Q Consensus        73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~  139 (233)
                      .|.+++ .++. -..+|.|.+||+.+++....+...    .......++||+++++....         .+.+.++|+.+
T Consensus        23 ~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWISDT-EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeCCC-cEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            576654 4443 356788999999877643222221    13446789999999887643         45688899876


Q ss_pred             Ceeeeeeec---CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCc-----------------eeEEE
Q 026765          140 FKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAG-----------------CYCIA  198 (233)
Q Consensus       140 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-----------------v~~i~  198 (233)
                      .........   ...+....|+|+|+.++... ++.+.+.+....+.++... +....                 -..+.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            654332221   12344578999999988765 5567777765544332221 11111                 13677


Q ss_pred             ECCCCCEEEEeeC-CCcEEEEec
Q 026765          199 IDPMGRYFAVGSA-DSLVSLWDI  220 (233)
Q Consensus       199 ~~p~~~~las~s~-dg~v~iwd~  220 (233)
                      |||||++||.... +..|..+.+
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCeEEEEEecccccceeec
Confidence            9999999998763 455665554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.94  E-value=0.0021  Score=49.43  Aligned_cols=195  Identities=16%  Similarity=0.134  Sum_probs=119.6

Q ss_pred             EEEEC---cCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCC-----------
Q 026765           25 SVAWN---CTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGD-----------   88 (233)
Q Consensus        25 ~~~~~---~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d-----------   88 (233)
                      .+.|.   +||++|+... .+..|-+-|+.....  .+.++++ ....+..+...+. ...+++.++.+           
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt--~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKC--DAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE--EEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceee--eEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence            44554   4788886665 688888888764322  1222332 3344555554332 23455555542           


Q ss_pred             -------CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC---------------cE--------------
Q 026765           89 -------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD---------------EL--------------  132 (233)
Q Consensus        89 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---------------~i--------------  132 (233)
                             +.+.+.|..+.+...+....+....+.++++|+++++.+.+.               .+              
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             cchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence                   235678888877777777777667799999999998876431               12              


Q ss_pred             ---------EEEEcCCC---eeeeeeecCceeeEEEECCCCCEEEEEeC-CCeEEEEecCCce--------eeeEEe---
Q 026765          133 ---------TILDVRKF---KPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLR--------PLDTVV---  188 (233)
Q Consensus       133 ---------~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~--------~~~~~~---  188 (233)
                               .+.|.+..   ..+..+..+.....+..+|||+++++++. +.++.++|++...        +-..+.   
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                     23333221   01111222233457889999999988865 8999999985321        111111   


Q ss_pred             eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (233)
Q Consensus       189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~  222 (233)
                      ...-+....+|+.+|.-..|---|..|.-||+..
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            1233456788999887677777899999999853

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.80  E-value=0.00089  Score=51.57  Aligned_cols=146  Identities=13%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEE--CCCCCeEEEEcCCC------------------cEEE
Q 026765           77 KHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITY--KPDGTHIAVGNRDD------------------ELTI  134 (233)
Q Consensus        77 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~--~~~~~~l~~~~~d~------------------~i~i  134 (233)
                      +|..+++.-..+.+|.+-|+++-++.+.....  ...-.+..  .|+-.|++..++..                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            45556666678889999999988876654432  22223343  45556777666532                  3667


Q ss_pred             EEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC---------------eE-----------------------EEE
Q 026765          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG---------------TV-----------------------EVL  176 (233)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~v-----------------------~~~  176 (233)
                      +|..+.+...+...+.....+.++++|+++++.+.+.               .+                       .+.
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            8988888888777777788899999999998887431               12                       333


Q ss_pred             ecCC--ceeeeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEecCC
Q 026765          177 TYPS--LRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISE  222 (233)
Q Consensus       177 ~~~~--~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~  222 (233)
                      |.+.  ...+..+..-......+.++|||+++++++ -+.++.|+|++.
T Consensus       258 D~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         258 DGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             ECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             cccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            3221  111111122223456789999999976554 689999999874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.16  E-value=0.0043  Score=44.43  Aligned_cols=94  Identities=17%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             EcCC--CCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC-----cEEEEEcCCCeeeee
Q 026765           74 WDPK--HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD-----ELTILDVRKFKPIHR  145 (233)
Q Consensus        74 ~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~~  145 (233)
                      .+|+  +..+++++  ++.|.+.|+..++..+.....+.....+|+|||++|+-... ++     .+.+++....+....
T Consensus         6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC--CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe--CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            3566  65555443  45688889988876543333345566899999999885432 21     366667665554322


Q ss_pred             eecC-------ceeeEEEECCCCCEEEEEeC
Q 026765          146 RKFG-------YEVNEIAWNMTGEMFFLTTG  169 (233)
Q Consensus       146 ~~~~-------~~~~~~~~~~~~~~~~~~~~  169 (233)
                      ....       .......|+|+|+.++....
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEc
Confidence            1111       22456789999998887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.024  Score=40.73  Aligned_cols=210  Identities=10%  Similarity=-0.008  Sum_probs=120.2

Q ss_pred             CccccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765           18 GHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (233)
Q Consensus        18 ~H~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~   96 (233)
                      .....+.+++|++..+.|.=.. .++.|..-+++...........+......+..+++.+.++++..+-...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3455677899998887775554 455555544432111111111222233456678887766667666677789999999


Q ss_pred             CCCeeeeeeee-cCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEE-eCCC
Q 026765           97 RSGKCSQQAEL-SGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT-TGNG  171 (233)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  171 (233)
                      ........... ...+..++++|...++....  ..+.|.-.++............ .....+++.+.++.+... ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            76654333332 24467788888655554433  3345666666544332222221 346788888877766655 5578


Q ss_pred             eEEEEecCCceeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765          172 TVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (233)
Q Consensus       172 ~v~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~  228 (233)
                      .|...++........+..  .......+++.. +..+.+-..++.|...+..++..++.
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEE
Confidence            888888754322211222  123456777763 44555555778888888877754443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.039  Score=39.54  Aligned_cols=209  Identities=9%  Similarity=0.010  Sum_probs=125.9

Q ss_pred             eeCccccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765           16 YTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (233)
Q Consensus        16 ~~~H~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw   94 (233)
                      +..+...+.+++|++..+.|.-.. .++.|+.-+++...  . . ..+..-...+..++++..+.++..+-...+.|.+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~-~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--P-T-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--C-E-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--c-E-EEEEeccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence            444556688899998888776654 45667666664321  1 1 12223335678888876666665666677899999


Q ss_pred             ECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcC---CCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEE-e
Q 026765           95 DARSGKCSQQAELS-GENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT-T  168 (233)
Q Consensus        95 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~  168 (233)
                      ++....+....... ..+..++++|...++.-...   ...|.-.++...........+ .....+++.+.++.+... .
T Consensus       107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence            98765433222211 34567888887766654332   223444455443322212212 245688888777776555 5


Q ss_pred             CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (233)
Q Consensus       169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~  230 (233)
                      ..+.|...++........+.+ .....++++. .+..+.+-...+.|...|...++.++++.
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEECCCCCeEEEECC-CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            678888888764332222222 2334678876 34455565577889999999998877663

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.051  Score=38.89  Aligned_cols=161  Identities=10%  Similarity=-0.006  Sum_probs=95.8

Q ss_pred             CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCee
Q 026765           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIA-VGNRDDELTILDVRKFKP  142 (233)
Q Consensus        65 h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~  142 (233)
                      +...+..++|++..+.++.+-..++.|...++..+......... ..+..++++.-+..|. +....+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            44457789998876655555566788888888765433222211 3456788876555554 555667899998865432


Q ss_pred             eeeeec-CceeeEEEECCCCCEEEEEeCC-Ce--EEEEecCCceeeeEEeeecCceeEEEECCCCCEE-EEeeCCCcEEE
Q 026765          143 IHRRKF-GYEVNEIAWNMTGEMFFLTTGN-GT--VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVSL  217 (233)
Q Consensus       143 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l-as~s~dg~v~i  217 (233)
                      ...... ...+..++.+|...++...... +.  +...+.............-.....+++++.++.| .+-...+.|..
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence            221121 1356788888877776655432 23  4444443222211111222456789999877766 44456788999


Q ss_pred             EecCCcEE
Q 026765          218 WDISEMLC  225 (233)
Q Consensus       218 wd~~~~~~  225 (233)
                      .|++...+
T Consensus       194 ~~~~g~~~  201 (263)
T d1npea_         194 LNPAQPGR  201 (263)
T ss_dssp             EETTEEEE
T ss_pred             EECCCCCe
Confidence            99875544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.05  E-value=0.079  Score=42.35  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCC-EEE
Q 026765          130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGR-YFA  207 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~-~la  207 (233)
                      +.+.-+|+.+.+.+.+...+.+...-...-.+.+++.++.||.++.+|.++++.+-++...... -.-+.+..+|+ |++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            3566778888877776665444332223335678888999999999999999988776532211 11245556775 555


Q ss_pred             Eee
Q 026765          208 VGS  210 (233)
Q Consensus       208 s~s  210 (233)
                      ..+
T Consensus       518 v~a  520 (560)
T d1kv9a2         518 IMA  520 (560)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.98  E-value=0.19  Score=37.42  Aligned_cols=148  Identities=15%  Similarity=0.118  Sum_probs=85.0

Q ss_pred             CCCCEEEEEeCCC-----------eEEEEECCCCeeeeeeee--cCC--eeEEEECCCCCeEEEEcCC-CcEEEEEcCCC
Q 026765           77 KHADLIATASGDK-----------TVRLWDARSGKCSQQAEL--SGE--NINITYKPDGTHIAVGNRD-DELTILDVRKF  140 (233)
Q Consensus        77 ~~~~~l~sg~~d~-----------~i~iwd~~~~~~~~~~~~--~~~--~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~  140 (233)
                      .++++++.|+.+.           .+.+||..+++.......  ...  ....++.++++.++.|+.+ ..+.+||..+.
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence            3456666666421           367899988765432221  111  2346788999999888765 57999998775


Q ss_pred             eeeeeeec--CceeeEEEECCCCCEEEEEeCC------CeEEEEecCCcee--eeEEe------eecC------ceeEEE
Q 026765          141 KPIHRRKF--GYEVNEIAWNMTGEMFFLTTGN------GTVEVLTYPSLRP--LDTVV------AHTA------GCYCIA  198 (233)
Q Consensus       141 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~--~~~~~------~~~~------~v~~i~  198 (233)
                      .....-..  ...-..++...+++.++.++..      ..+.+||..+.+-  +....      .+..      .-..+.
T Consensus       109 ~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (387)
T d1k3ia3         109 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  188 (387)
T ss_dssp             EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEE
Confidence            54332211  1122345556788888887643      4678888765431  11000      0000      001123


Q ss_pred             ECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765          199 IDPMGRYFAVGSADSLVSLWDISEML  224 (233)
Q Consensus       199 ~~p~~~~las~s~dg~v~iwd~~~~~  224 (233)
                      ..++++.+..+..++.+.++|.....
T Consensus       189 ~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         189 GWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             EeCCCCEEEecCcCCcEEecCcccCc
Confidence            34567777777777777777776554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.88  E-value=0.21  Score=37.07  Aligned_cols=117  Identities=13%  Similarity=0.102  Sum_probs=70.9

Q ss_pred             EEEEECcCCCEEEEEeCCC-----------CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-CeE
Q 026765           24 HSVAWNCTGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-KTV   91 (233)
Q Consensus        24 ~~~~~~~~~~~l~s~~~D~-----------~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-~~i   91 (233)
                      .......+|+.++-|+.+.           .+.+||+.+..-...... ...|.......++.+++ .+++.|+.+ ..+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGNG-QIVVTGGNDAKKT  100 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTTS-CEEEECSSSTTCE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC-CCCcccceeEEEEecCC-cEEEeecCCCcce
Confidence            3444456788888888532           267899875432222221 12333333455666664 677777655 589


Q ss_pred             EEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCC------CcEEEEEcCCCee
Q 026765           92 RLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRD------DELTILDVRKFKP  142 (233)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~  142 (233)
                      .+||..+......-....  ..-.++..+|++.++.|+.+      ..+.+||+.+.+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            999998876543222221  12346778899998888753      3588999876543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.37  E-value=0.23  Score=39.67  Aligned_cols=79  Identities=11%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecC-ceeEEEECCCCC-EEEE
Q 026765          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA-GCYCIAIDPMGR-YFAV  208 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~-~las  208 (233)
                      .+.-+|+.+++.+.+.....+..+-.....+.+++.++.||.++.+|.++++.+-++.-... ...-+.|..+|+ |+++
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            45566666666665554433222211222466788899999999999999999877653211 112255666775 5544


Q ss_pred             e
Q 026765          209 G  209 (233)
Q Consensus       209 ~  209 (233)
                      .
T Consensus       525 ~  525 (571)
T d2ad6a1         525 M  525 (571)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.25  E-value=0.3  Score=38.93  Aligned_cols=78  Identities=18%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCC-EEEE
Q 026765          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGR-YFAV  208 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~-~las  208 (233)
                      .+.-+|+.+++.+.+.+...+...=.....+.++++++.||.++.+|.++++.+-++...... -.-+.|..+|+ |++.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            355566666666655554333222122336778888999999999999999998776532211 11245555776 4443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.86  E-value=0.53  Score=37.56  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCC-EEE
Q 026765          130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGR-YFA  207 (233)
Q Consensus       130 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~-~la  207 (233)
                      +.+.-+|+.+++...+...+.+...-.....+..+++++.||.++.+|.++++.+-++...... -.-+.|..+|+ |++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            3566677777776666555444332223345678888999999999999999998776632211 12256667885 555


Q ss_pred             Ee
Q 026765          208 VG  209 (233)
Q Consensus       208 s~  209 (233)
                      ..
T Consensus       546 i~  547 (582)
T d1flga_         546 VT  547 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.47  E-value=0.55  Score=35.77  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             EEECCCCCeEEEEcC-C----CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC----------------Ce
Q 026765          114 ITYKPDGTHIAVGNR-D----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN----------------GT  172 (233)
Q Consensus       114 ~~~~~~~~~l~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~  172 (233)
                      .+++|++++++.+.. +    ..++++|+.+.+.+...........+.|.++++.++....+                ..
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            567999999874432 2    35899999998876543222223578899999988765422                24


Q ss_pred             EEEEecCCceeeeE--Eeeec--CceeEEEECCCCCEEEEeeC---CCcEEEEe
Q 026765          173 VEVLTYPSLRPLDT--VVAHT--AGCYCIAIDPMGRYFAVGSA---DSLVSLWD  219 (233)
Q Consensus       173 v~~~~~~~~~~~~~--~~~~~--~~v~~i~~~p~~~~las~s~---dg~v~iwd  219 (233)
                      +..+.+.+......  +....  ..+..+..+++++++.....   +....+|-
T Consensus       210 v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~  263 (430)
T d1qfma1         210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (430)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             EEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence            55555543322211  22222  23556788999998764332   33444553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.46  E-value=0.54  Score=37.65  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=47.4

Q ss_pred             cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCC-EEEE
Q 026765          131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGR-YFAV  208 (233)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~-~las  208 (233)
                      .+.-||+.+++.+.+.....+...-..+..+.+++.++.||.++.+|.++++.+-++...... -.-+.|..+|+ |++.
T Consensus       454 ~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence            455666666665554444333222222335678888999999999999999998776532211 12245556775 5543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.21  E-value=1.2  Score=33.67  Aligned_cols=101  Identities=9%  Similarity=0.041  Sum_probs=58.4

Q ss_pred             cEEEEEEcCCCCCEEEEEeCCC----eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC--------------
Q 026765           68 SVDQLCWDPKHADLIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD--------------  129 (233)
Q Consensus        68 ~v~~~~~~~~~~~~l~sg~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------  129 (233)
                      .+..++++|++..++++-+.+|    .+++.|+.+++.............++|.+|+..|+-...+              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            3455678998766665554443    6899999999865422212222458899999887644322              


Q ss_pred             --CcEEEEEcCCCeeeee--eec---CceeeEEEECCCCCEEEEEe
Q 026765          130 --DELTILDVRKFKPIHR--RKF---GYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus       130 --~~i~i~d~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~  168 (233)
                        ..+..+.+.+......  ...   ..-...+..+.+++++++..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence              2466666654322111  111   11244566788888876543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=0.36  Score=38.57  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee--eEEEECCCCCEE
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMF  164 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  164 (233)
                      |.|.-+|+.+++..-......+...-.++..+..++.|+.|+.++.+|.++++.+.+.+.+..+  .-+.+..+|+..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5677788888876655554443332223345667888999999999999999999887765432  335666788653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.56  E-value=1.8  Score=31.71  Aligned_cols=135  Identities=14%  Similarity=0.119  Sum_probs=75.3

Q ss_pred             CCeEEEEECCCCeeee-eeeec----------CCeeEEEECCCCCe-EEEE---cCCCcEEEEEcCCC--eeeeeeec--
Q 026765           88 DKTVRLWDARSGKCSQ-QAELS----------GENINITYKPDGTH-IAVG---NRDDELTILDVRKF--KPIHRRKF--  148 (233)
Q Consensus        88 d~~i~iwd~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~-l~~~---~~d~~i~i~d~~~~--~~~~~~~~--  148 (233)
                      .|.|.++|+.+..... .....          ...+.+.-.+++.. |++.   ....+|.+|++...  +..+....  
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4889999987654211 11111          11233444566663 4443   24567888887432  22222211  


Q ss_pred             --CceeeEEEECCCCCEEEEEeC---------------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEE-Eee
Q 026765          149 --GYEVNEIAWNMTGEMFFLTTG---------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGS  210 (233)
Q Consensus       149 --~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~la-s~s  210 (233)
                        ....+.++...++.++++-..               -+...++..+..+ ...+...-...+.|+++|++++|. +-+
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC-EEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc-eEEEcCCCCccceeEECCCCCEEEEEeC
Confidence              124677887778877766321               1233444443332 233333445678999999998765 455


Q ss_pred             CCCcEEEEecCCc
Q 026765          211 ADSLVSLWDISEM  223 (233)
Q Consensus       211 ~dg~v~iwd~~~~  223 (233)
                      ..+.|++|++...
T Consensus       226 ~~~~i~~y~~~~~  238 (340)
T d1v04a_         226 LAHKIHVYEKHAN  238 (340)
T ss_dssp             GGTEEEEEEECTT
T ss_pred             CCCeEEEEEeCCC
Confidence            6788999998743

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.10  E-value=0.49  Score=37.67  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=52.8

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee--eEEEECCCCCE-EE
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEM-FF  165 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~  165 (233)
                      |.+.-||+.+++..-..........-...-.+..+++|+.|+.++.+|.++++.+........+  .-+.+..+|++ ++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            4688899999887665544433222122335678888999999999999999999877764332  22445557764 34


Q ss_pred             EEeC
Q 026765          166 LTTG  169 (233)
Q Consensus       166 ~~~~  169 (233)
                      +..+
T Consensus       537 v~~G  540 (573)
T d1kb0a2         537 VAVG  540 (573)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            4333

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.48  E-value=0.37  Score=38.42  Aligned_cols=77  Identities=17%  Similarity=0.145  Sum_probs=49.7

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceee--EEEECCCCCEEE
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN--EIAWNMTGEMFF  165 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  165 (233)
                      |.|.-+|+.+++..-..........-.+...+..++.++.|+.++.+|.++++.+.+...+..+.  -+.+..+|+..+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            45777788877765544433332221122245577789999999999999999998877654432  355555776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.85  E-value=0.4  Score=38.41  Aligned_cols=80  Identities=13%  Similarity=0.061  Sum_probs=51.4

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCce--eeEEEECCCCCE-EE
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--VNEIAWNMTGEM-FF  165 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~  165 (233)
                      |.|.-||+.+++..-..........-.+...+..++.|..|+.++.+|.++++.+.+......  ..-+.+..+|+. ++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            567788888887655444333322212223466777899999999999999999987776432  233455557764 44


Q ss_pred             EEe
Q 026765          166 LTT  168 (233)
Q Consensus       166 ~~~  168 (233)
                      +..
T Consensus       533 v~~  535 (596)
T d1w6sa_         533 IYY  535 (596)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            333

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.30  E-value=0.86  Score=36.08  Aligned_cols=81  Identities=11%  Similarity=0.187  Sum_probs=53.6

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee--eEEEECCCCCE-EE
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEM-FF  165 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~  165 (233)
                      |.+.-+|+.+++..-..........-.+.-.+..++.|+.|+.++.+|.++++.+.+......+  .-+.+..+|+. ++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            5678889999887666555443332222334567788999999999999999999877764332  23455557754 44


Q ss_pred             EEeC
Q 026765          166 LTTG  169 (233)
Q Consensus       166 ~~~~  169 (233)
                      +..+
T Consensus       518 v~aG  521 (560)
T d1kv9a2         518 IMAG  521 (560)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            4443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.32  E-value=4.8  Score=30.59  Aligned_cols=65  Identities=8%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe------cCcCcEEEEEEcCC
Q 026765           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPK   77 (233)
Q Consensus        11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~   77 (233)
                      +..+.+...-..-++|+|.|+|++|++--.+|.|++++.....  ......+.      .-......++++|+
T Consensus        17 f~~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~--~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          17 FDKKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             cEEEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc--EeecccCCccccccCCCCceeeEEeCCC
Confidence            4445555445667799999999999987667888888754321  11111111      11245678999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.14  E-value=4.3  Score=29.85  Aligned_cols=195  Identities=14%  Similarity=0.188  Sum_probs=106.0

Q ss_pred             CcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE------cCCCCCEEEEEeCC---CeEEEEECCCC
Q 026765           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW------DPKHADLIATASGD---KTVRLWDARSG   99 (233)
Q Consensus        29 ~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~~l~sg~~d---~~i~iwd~~~~   99 (233)
                      +|+..+++....++-+.+||++-    +... .++  .+.++.+..      ......+++....+   .+|.+|.+...
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G----~~l~-~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~  109 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEG----KMLH-SYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTC----CEEE-ECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred             CcCccEEEEEcCcCCEEEEcCCC----cEEE-ecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence            34567887777777799999852    1111 111  123333322      21111233333332   36778877432


Q ss_pred             -eeeeeeee--------cCCeeEEEE--CCC-CC-eEEEEcCCCcEEEEEcCC---C----eeeeeeecCceeeEEEECC
Q 026765          100 -KCSQQAEL--------SGENINITY--KPD-GT-HIAVGNRDDELTILDVRK---F----KPIHRRKFGYEVNEIAWNM  159 (233)
Q Consensus       100 -~~~~~~~~--------~~~~~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~~---~----~~~~~~~~~~~~~~~~~~~  159 (233)
                       .....+..        ...++.+++  +|. +. ++++...++.+..|.+..   .    +.+.......++..+.+..
T Consensus       110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd  189 (353)
T d1h6la_         110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD  189 (353)
T ss_dssp             TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred             ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence             11111111        112344444  664 44 456777788888887632   2    2333445566788999999


Q ss_pred             CCCEEEEEeCCCeEEEEecCC-----ceeeeEEee--ecCceeEEEE--CCCCC-EEEEee-CCCcEEEEecCCc-EEEE
Q 026765          160 TGEMFFLTTGNGTVEVLTYPS-----LRPLDTVVA--HTAGCYCIAI--DPMGR-YFAVGS-ADSLVSLWDISEM-LCVR  227 (233)
Q Consensus       160 ~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~--~~~~v~~i~~--~p~~~-~las~s-~dg~v~iwd~~~~-~~i~  227 (233)
                      ..+.+.++-++.-+..++...     ...+....+  ....+-.+++  .+++. ||++.+ .|++..|||.... ..+-
T Consensus       190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g  269 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA  269 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence            989999998887776666532     112211111  2234555553  44443 555444 5788999999763 6666


Q ss_pred             eee
Q 026765          228 TFT  230 (233)
Q Consensus       228 ~~~  230 (233)
                      .|.
T Consensus       270 ~F~  272 (353)
T d1h6la_         270 DFQ  272 (353)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.67  E-value=4.8  Score=28.99  Aligned_cols=130  Identities=12%  Similarity=0.186  Sum_probs=85.6

Q ss_pred             CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe
Q 026765           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (233)
Q Consensus        89 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (233)
                      .++.|-|+..+.........  .-+.-.+|..+.|+.-+ ...+.++|+++.+.+....+..++--..|- +.+.++.- 
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~--AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~lV-  119 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALV-  119 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC--CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEES-SSSEEEEE-
T ss_pred             ceEEEEECCCCCcceecccc--hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEec-CCCEEEEE-
Confidence            46777888665432222222  22345688888887665 557999999999988888777777666664 33444444 


Q ss_pred             CCCeEEEEecC-CceeeeEEeeecC----ceeEEEECCCCCEEEEee---CC----CcEEEEecCCc
Q 026765          169 GNGTVEVLTYP-SLRPLDTVVAHTA----GCYCIAIDPMGRYFAVGS---AD----SLVSLWDISEM  223 (233)
Q Consensus       169 ~~~~v~~~~~~-~~~~~~~~~~~~~----~v~~i~~~p~~~~las~s---~d----g~v~iwd~~~~  223 (233)
                      .+..|+=|+.+ ...|.+.+.-|..    .|..-..+++.++++..+   .+    |.+.+|..+..
T Consensus       120 T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         120 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence            45578888874 2356666666643    466667789999876543   23    67889988765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=5.1  Score=27.91  Aligned_cols=175  Identities=10%  Similarity=0.011  Sum_probs=95.8

Q ss_pred             CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---eeeeeec--CCeeEEEEC
Q 026765           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC---SQQAELS--GENINITYK  117 (233)
Q Consensus        43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~--~~~~~~~~~  117 (233)
                      .|+..+++...   ..  .+-.....+..++|++....+..+=..++.|.--++.....   .......  ..+..+++.
T Consensus        11 ~I~~~~l~~~~---~~--~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD   85 (266)
T d1ijqa1          11 EVRKMTLDRSE---YT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (266)
T ss_dssp             SEEEEETTSCC---CE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             eEEEEECCCCc---ce--eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence            46666665321   11  12224456678999887655554444566677666643221   1111111  234568887


Q ss_pred             CCCCeEE-EEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEe--CCCeEEEEecCCceeeeEEe-eecC
Q 026765          118 PDGTHIA-VGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVV-AHTA  192 (233)
Q Consensus       118 ~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~~~~  192 (233)
                      +.+..|. +-...++|.+.++........... ......++.+|...++....  ..+.|...+..... ...+. ..-.
T Consensus        86 ~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~  164 (266)
T d1ijqa1          86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQ  164 (266)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCS
T ss_pred             eccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccc
Confidence            6555554 445567899999876543332222 23567788887666655543  23456555554322 22222 2234


Q ss_pred             ceeEEEECCCCCEEE-EeeCCCcEEEEecCCc
Q 026765          193 GCYCIAIDPMGRYFA-VGSADSLVSLWDISEM  223 (233)
Q Consensus       193 ~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~  223 (233)
                      ....+++++.++.|. +-+..+.|...|++..
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            567899998776554 4455678888887643