Citrus Sinensis ID: 026840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPLWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWYI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEccccccEEEEEEEEccEEEEEEEEEcccccccHHHHHcccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEEEEEEEEccEEEccccccEEEEEEEEEccEEEEEEEEEEcccccHHHEEEEEccccccEEEEEEc
Coil and Loop (DISEMBL)
mplgkyycdycdkqFQDTYFARKRHLQGIQHLRAKALWYdslnetnqtypdgfpkgvcsrfvktgfcpfgdsckylhpknnpaqntgnqglratgftdinarsssvDQRIylaggssfpgdmmrdsmgmswgnlppslkpppeggypllplwigdssavsfshpicwitnVKLSYGYMScnmnvssisAISVVQCGYCVTCRVkicsgidhtlnayilhdwksetcirvwyi
Flexible Loop (DISEMBL)
MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPLWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTlnayilhdwksetciRVWYI
Low Complexity Region (SEG)
MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSFPGDMMRDSMGMSWGNLPPSlkpppeggypllplWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWYI
Disordered region (IsUnstruct)
***GKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLH*******************************************************************GYPLLPLWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWY*
Disordered Region (DISOPRED)
**LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYD*****************CSRFVKTGFCPFGDS*****************************************************************LKPPPEGGYPLLPLWIG*****SFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWYI
Disordered Region (DISEMBL)
MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPLWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWYI
Disordered Region (DISPRO)
*PLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLA***************MSWGNLPPSLKPPPEGGYPLLPLWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWYI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPLWIGDSSAVSFSHPICWITNVKLSYGYMSCNMNVSSISAISVVQCGYCVTCRVKICSGIDHTLNAYILHDWKSETCIRVWYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q0JP11	167	Zinc finger CCCH domain-c	yes	no	0.642	0.892	0.490	1e-30
Q6AXL8	173	Zinc finger matrin-type p	yes	no	0.612	0.820	0.335	1e-18
Q2TA39	170	Zinc finger matrin-type p	yes	no	0.629	0.858	0.327	3e-18
Q9UDW3	170	Zinc finger matrin-type p	yes	no	0.629	0.858	0.327	1e-17
Q9CQR5	170	Zinc finger matrin-type p	yes	no	0.625	0.852	0.310	2e-16
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.211	0.104	0.44	0.0009

>sp|Q0JP11|C3H3_ORYSJ Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 94/165 (56%), Gaps = 16/165 (9%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTY----------- 49
           MPLGKYYCDYC+KQFQDT  ARKRHL G QH RA+ALWYD++                  
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 50  PDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATG--FTDINARSSSVD 107
           P     GVC  FV+TG C FGDSC+Y HPK  PA          +G      N + S  +
Sbjct: 61  PGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQPN 120

Query: 108 QRIYLAG-GSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
              Y A  GSSF G+++      SWGNLPPSL+PPPEGGYP  P 
Sbjct: 121 FVGYQAADGSSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPF 163

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6AXL8|ZMAT5_DANRE Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 19/161 (11%)

Query: 5   KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
           +YYCDYCD+ FQD    RK+HL G+QH RAK  W+D+  +      D   K VC +FV+T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 65  GFCPFGDSCKYLHPKNNP----AQNTGNQGLRATGFTDINARSSSVDQ---RIYLAGGSS 117
           G C FG SC++ H          Q   ++  +        +   SVD+   R      + 
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 118 FPGDMMRDSMG------------MSWGNLPPSLKPPPEGGY 146
             G ++R                +S  +LPPSL PPP GG+
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGW 164

Danio rerio (taxid: 7955)

>sp|Q2TA39|ZMAT5_BOVIN Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 5   KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
           +Y+CDYCD+ FQD    RK+HL G+QHL+AK LWYD   +      D   K  C +F+ T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCPFGDSCKYLHPKNNPAQNTGNQ----------GLRATGFTDINARSSSVDQRIYLAG 114
           G C FG +C++ H      Q    Q           L      ++        +   L+ 
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRLSS 123

Query: 115 GSSFPGDMMRDSM---GMSW---GNLPPSLKPPPEGGYPLLP 150
             S   + +R ++    + W     LPPSL+ PP GG+PL P
Sbjct: 124 APSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQP 165

Bos taurus (taxid: 9913)

>sp|Q9UDW3|ZMAT5_HUMAN Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 5   KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
           +Y+CDYCD+ FQD    RK+HL G+QHL+AK +WYD   +      D   K  C +F+ T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCPFGDSCKYLHPKNNPAQNTGNQG----------LRATGFTDINARSSSVDQRIYLAG 114
           G C FG +C++ H      Q    Q           L A    + +       +   L+ 
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS 123

Query: 115 GSSFPGDMMRDSM---GMSW---GNLPPSLKPPPEGGYPLLP 150
             S   + +R ++    + W     LPPSL+ PP GG+PL P
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQP 165

Homo sapiens (taxid: 9606)

>sp|Q9CQR5|ZMAT5_MOUSE Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 16/161 (9%)

Query: 5   KYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKT 64
           +Y+CDYCD+ FQD    RK+HL G+QHL+AK +WYD   +      D   K  C +F+ T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCPFGDSCKYLHPKNNPAQNTGNQ----------GLRATGFTDINARSSSVDQRIYLAG 114
           G C FG +C++ H      Q    Q           L      + +       +   L+ 
Sbjct: 64  GQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSS 123

Query: 115 GSSFPGDMMRDSM---GMSW---GNLPPSLKPPPEGGYPLL 149
             S   + +R ++    + W     LPPSL+ PP GG+ +L
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVL 164

Mus musculus (taxid: 10090)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score = 43.9 bits (102), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 31  HLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
           H R +A    ++  T Q YP+ F +  C  ++KTG C FG SCK+ HPKN
Sbjct: 70  HPRDRASVEATVRATGQ-YPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 118

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
296089827	152	unnamed protein product [Vitis vinifera]	0.633	0.967	0.651	9e-49
255543000	156	conserved hypothetical protein [Ricinus	0.586	0.871	0.585	4e-42
224122848	150	predicted protein [Populus trichocarpa]	0.607	0.94	0.621	5e-41
449435572	156	PREDICTED: zinc finger CCCH domain-conta	0.642	0.955	0.545	2e-38
413947046	166	hypothetical protein ZEAMMB73_397300 [Ze	0.625	0.873	0.511	9e-34
297812877	146	hypothetical protein ARALYDRAFT_910739 [	0.603	0.958	0.522	2e-33
242052467	164	hypothetical protein SORBIDRAFT_03g00959	0.616	0.871	0.494	7e-33
238481388	147	nucleic acid binding / zinc ion binding	0.607	0.959	0.503	4e-32
294461500	126	unknown [Picea sitchensis]	0.525	0.968	0.470	2e-31
205688275	167	RecName: Full=Zinc finger CCCH domain-co	0.642	0.892	0.490	7e-29

>gi|296089827|emb|CBI39646.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 116/152 (76%), Gaps = 5/152 (3%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSR 60
           MPLGKY+CDYCDKQFQDT  ARKRHLQG+QH RAKALWYDS  + NQ   +G+ KGVC+R
Sbjct: 1   MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNR 60

Query: 61  FVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTD-INARSSSVDQRIYLAGGSSFP 119
           FV+TGFC +GDSCKY HPK +  QNT  Q +  TGF D I + S+  +Q   L GG   P
Sbjct: 61  FVRTGFCQYGDSCKYFHPKQS-LQNTNTQSIPVTGFPDNIQSLSNPGNQ---LVGGGPLP 116

Query: 120 GDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
           G++++DSMG SWGNLPPSLKPPPEGGYP LP 
Sbjct: 117 GNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPF 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543000|ref|XP_002512563.1| conserved hypothetical protein [Ricinus communis] gi|223548524|gb|EEF50015.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 108/157 (68%), Gaps = 21/157 (13%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLN----ETNQTYPD----G 52
           MPLGKYYCDYCDK+FQDT  ARKRHLQ   HLR+K++WY+SLN    + NQ + +    G
Sbjct: 1   MPLGKYYCDYCDKEFQDTPIARKRHLQSSSHLRSKSIWYNSLNSNFIDPNQAHTNGAAGG 60

Query: 53  FPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYL 112
           F KGVC+RFVKTGFCPFGDSCKYLHP       T    L++TG  D         Q  ++
Sbjct: 61  FTKGVCNRFVKTGFCPFGDSCKYLHP------TTTTNNLQSTGLMD-------NPQSPFI 107

Query: 113 AGGSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLL 149
            G  S   D++RD+MGMSWGNLPPSLKPPPEGG  LL
Sbjct: 108 PGNQSLQDDVVRDNMGMSWGNLPPSLKPPPEGGXGLL 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122848|ref|XP_002318931.1| predicted protein [Populus trichocarpa] gi|222857307|gb|EEE94854.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/156 (62%), Positives = 111/156 (71%), Gaps = 15/156 (9%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQ-----TYPDGFPK 55
           MP+GKYYCDYCDKQFQDT  ARKRHLQ   HLRAK+LW+   + +N      T   GF K
Sbjct: 1   MPVGKYYCDYCDKQFQDTPHARKRHLQSSSHLRAKSLWFSRNSNSNTLNSNNTDAGGFVK 60

Query: 56  GVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGG 115
           G+C+RFVKTGFCP+GDSCKYLH   N A + G      T F D N +S ++     LAGG
Sbjct: 61  GLCNRFVKTGFCPYGDSCKYLH--TNFATSQG------TAFKD-NVQSPTMPGN-QLAGG 110

Query: 116 SSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
           SSFPG  +R+SMGMSWGNLPPSLKPPPEGGYP LP 
Sbjct: 111 SSFPGVAVRESMGMSWGNLPPSLKPPPEGGYPPLPF 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435572|ref|XP_004135569.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus] gi|449508616|ref|XP_004163363.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 105/154 (68%), Gaps = 5/154 (3%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGF---PKGV 57
           MPLGKYYCDYCDKQFQDT FARKRHLQ + H +AKALW+DS  + NQ++P  F   P+ +
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-I 59

Query: 58  CSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSS 117
           C+RF+ TGFC +GDSCKY HP NN      +      GF + N +  +V    ++ G SS
Sbjct: 60  CNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVDGNSS 118

Query: 118 FPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
             G ++ D +G SWGNLPPSL PPP+GGYP LP 
Sbjct: 119 STGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPF 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413947046|gb|AFW79695.1| hypothetical protein ZEAMMB73_397300 [Zea mays]

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 100/168 (59%), Gaps = 23/168 (13%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQ-------TYPDG- 52
           MPLGKYYCDYCDKQFQDT  ARKRHLQG+QH RA+ALWYDS+   +Q         PDG 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGT 60

Query: 53  FPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYL 112
             KG+C  FV+TG C +GDSC+Y HPK N      N  L A G    +  +  V Q   +
Sbjct: 61  LAKGICHHFVRTGACKYGDSCRYFHPKPNGV----NPALAAPGLG--SGPAPMVQQSDII 114

Query: 113 AGGSSF---PGDMMRDSMG------MSWGNLPPSLKPPPEGGYPLLPL 151
               +F    G  +  S G       SWGNLPPSL+PPPEGGYP LP 
Sbjct: 115 GNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPLPF 162

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812877|ref|XP_002874322.1| hypothetical protein ARALYDRAFT_910739 [Arabidopsis lyrata subsp. lyrata] gi|297320159|gb|EFH50581.1| hypothetical protein ARALYDRAFT_910739 [Arabidopsis lyrata subsp. lyrata]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 92/153 (60%), Gaps = 13/153 (8%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNE--TNQTYPDGFPKGVC 58
           MP GKYYCDYCDK+FQDT  ARKRHLQ   HLRAKALWY S +    N    +   KG+C
Sbjct: 1   MPSGKYYCDYCDKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLINPQVSNFATKGLC 60

Query: 59  SRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSF 118
           +RF+ + FCPFGDSC+Y HPKNNP          +TGF   N     VD       GS+ 
Sbjct: 61  NRFITSNFCPFGDSCRYFHPKNNPG---------STGFA--NNTQLHVDMLNQHIEGSTL 109

Query: 119 PGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
             D +    G  W +LPPSLKPPPE GYP LP 
Sbjct: 110 NRDYVSGRPGAGWFDLPPSLKPPPEQGYPQLPF 142

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052467|ref|XP_002455379.1| hypothetical protein SORBIDRAFT_03g009590 [Sorghum bicolor] gi|241927354|gb|EES00499.1| hypothetical protein SORBIDRAFT_03g009590 [Sorghum bicolor]

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 97/168 (57%), Gaps = 25/168 (14%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQ-------TYPDG- 52
           MPLGKYYCDYCDKQFQDT  AR+RHLQG+QH RA+ALWYDS+    Q         PDG 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPAARRRHLQGVQHQRARALWYDSIRHQEQHGGVSSLLLPDGT 60

Query: 53  FPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYL 112
             KG+C  FV+TG C +GDSC+Y HPK +      N  L A G    +     V Q  ++
Sbjct: 61  LAKGICHHFVRTGTCKYGDSCRYFHPKPDGV----NPALAAPG----SGPGPMVQQSDFI 112

Query: 113 AGGSSFPGDMMRDSMGMS---------WGNLPPSLKPPPEGGYPLLPL 151
               +F G    D    S         WGNLPPSL+PPPEGGYP LP 
Sbjct: 113 GNQPNFVGYQGPDRNSFSGNILGGHTAWGNLPPSLQPPPEGGYPPLPF 160

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481388|ref|NP_001154741.1| nucleic acid binding / zinc ion binding protein [Arabidopsis thaliana] gi|332006211|gb|AED93594.1| nucleic acid binding / zinc ion binding protein [Arabidopsis thaliana]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 95/153 (62%), Gaps = 12/153 (7%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNE--TNQTYPDGFPKGVC 58
           MP GKYYCDYC+K+FQDT  ARKRHLQ   HLRAKALWY S +    N    +   KG+C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 59  SRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSF 118
           +RF+ + FCPFGDSC+Y HP N    NTG     +TGFT+       +  + ++  GS+ 
Sbjct: 61  NRFITSNFCPFGDSCRYFHPNN----NTG-----STGFTNNTQLRVDMLNQQHIQ-GSTL 110

Query: 119 PGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
             D +    G  W +LPPSLKPPPE GYP LP 
Sbjct: 111 NRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPF 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461500|gb|ADE76311.1| unknown [Picea sitchensis]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 29/151 (19%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSR 60
           MPL KYYCDYCDKQFQDT  ARKRHLQG+QH RA+ LW+DS  +  Q + +   K +C+R
Sbjct: 1   MPLEKYYCDYCDKQFQDTPSARKRHLQGVQHQRARKLWFDSFKDPQQLHAENAGKAICTR 60

Query: 61  FVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATGFTDINARSSSVDQRIYLAGGSSFPG 120
           FVKTGFC FGD+CKY HP  N  Q+ G           +++   ++ Q +          
Sbjct: 61  FVKTGFCQFGDNCKYFHPVQNIEQHAG-----------VHSGEQAIGQVV---------- 99

Query: 121 DMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
                   +S  NLPPSL+PPPE G+P LP 
Sbjct: 100 --------ISSINLPPSLRPPPEVGHPQLPF 122

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|205688275|sp|Q0JP11.2|C3H3_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 3; Short=OsC3H3 gi|215701065|dbj|BAG92489.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187901|gb|EEC70328.1| hypothetical protein OsI_01197 [Oryza sativa Indica Group] gi|222618113|gb|EEE54245.1| hypothetical protein OsJ_01120 [Oryza sativa Japonica Group]

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 94/165 (56%), Gaps = 16/165 (9%)

Query: 1   MPLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTY----------- 49
           MPLGKYYCDYC+KQFQDT  ARKRHL G QH RA+ALWYD++                  
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 50  PDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPAQNTGNQGLRATG--FTDINARSSSVD 107
           P     GVC  FV+TG C FGDSC+Y HPK  PA          +G      N + S  +
Sbjct: 61  PGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQPN 120

Query: 108 QRIYLAG-GSSFPGDMMRDSMGMSWGNLPPSLKPPPEGGYPLLPL 151
              Y A  GSSF G+++      SWGNLPPSL+PPPEGGYP  P 
Sbjct: 121 FVGYQAADGSSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPF 163

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
ZFIN|ZDB-GENE-040808-31	181	zmat5 "zinc finger, matrin typ	0.323	0.414	0.5	2.8e-18
UNIPROTKB|E1C1J3	170	ZMAT5 "Uncharacterized protein	0.387	0.529	0.427	2.5e-17
UNIPROTKB|Q2TA39	170	ZMAT5 "Zinc finger matrin-type	0.375	0.511	0.431	2.5e-17
UNIPROTKB|F1RFF2	170	Ssc.6643 "Uncharacterized prot	0.375	0.511	0.431	2.5e-17
UNIPROTKB|Q9UDW3	170	ZMAT5 "Zinc finger matrin-type	0.375	0.511	0.420	5.3e-17
MGI|MGI:1914428	170	Zmat5 "zinc finger, matrin typ	0.375	0.511	0.420	5.3e-17
UNIPROTKB|E2RTJ3	170	ZMAT5 "Uncharacterized protein	0.375	0.511	0.409	1.8e-16
RGD|1559774	170	Zmat5 "zinc finger, matrin typ	0.280	0.382	0.469	2.1e-13
UNIPROTKB|F1RFG8	162	LOC100519448 "Uncharacterized	0.340	0.487	0.386	4.4e-13
FB|FBgn0051922	139	CG31922 [Drosophila melanogast	0.314	0.525	0.32	2.7e-05

ZFIN|ZDB-GENE-040808-31 zmat5 "zinc finger, matrin type 5" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 38/76 (50%), Positives = 49/76 (64%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK YYCDYCD+ FQD    RK+HL G+QH RAK  W+D+  +      D   K VC +F
Sbjct:     1 MGKRYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKF 60

Query:    62 VKTGFCPFGDSCKYLH 77
             V+TG C FG SC++ H
Sbjct:    61 VQTGHCVFGTSCRFSH 76

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E1C1J3 ZMAT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 41/96 (42%), Positives = 54/96 (56%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ FQD    RK+HL G+QHLRAK  WYD   +      +   K  C +F
Sbjct:     1 MGKRYFCDYCDRSFQDNLHNRKKHLNGVQHLRAKRAWYDLFRDAAAILQEEQSKKPCRKF 60

Query:    62 VKTGFCPFGDSCKYLHPKNNP-----AQNTGNQGLR 92
             ++TG C FG +C++ H          AQ  G Q LR
Sbjct:    61 LQTGQCDFGSNCRFSHMTEQDLEKLSAQVQGEQRLR 96

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2TA39 ZMAT5 "Zinc finger matrin-type protein 5" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 38/88 (43%), Positives = 50/88 (56%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ FQD    RK+HL G+QHL+AK LWYD   +      D   K  C +F
Sbjct:     1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKF 60

Query:    62 VKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
             + TG C FG +C++ H      Q    Q
Sbjct:    61 LLTGQCDFGSNCRFSHMSERDLQELSVQ 88

GO:0005737 "cytoplasm" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RFF2 Ssc.6643 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 38/88 (43%), Positives = 50/88 (56%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ FQD    RK+HL G+QHL+AK LWYD   +      D   K  C +F
Sbjct:     1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKF 60

Query:    62 VKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
             + TG C FG +C++ H      Q    Q
Sbjct:    61 LLTGQCDFGSNCRFSHMSERDLQELSIQ 88

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9UDW3 ZMAT5 "Zinc finger matrin-type protein 5" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 37/88 (42%), Positives = 50/88 (56%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ FQD    RK+HL G+QHL+AK +WYD   +      D   K  C +F
Sbjct:     1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60

Query:    62 VKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
             + TG C FG +C++ H      Q    Q
Sbjct:    61 LLTGQCDFGSNCRFSHMSERDLQELSIQ 88

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0008380 "RNA splicing" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1914428 Zmat5 "zinc finger, matrin type 5" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 37/88 (42%), Positives = 50/88 (56%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ FQD    RK+HL G+QHL+AK +WYD   +      D   K  C +F
Sbjct:     1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60

Query:    62 VKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
             + TG C FG +C++ H      Q    Q
Sbjct:    61 LLTGQCDFGSNCRFSHMSEQDLQELSVQ 88

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RTJ3 ZMAT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYC++ FQD    RK+HL G+QHL+AK +WYD   +      D   K  C +F
Sbjct:     1 MGKHYFCDYCNRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60

Query:    62 VKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
             + TG C FG +C++ H      Q    Q
Sbjct:    61 LLTGQCDFGSNCRFSHMSERDLQELSIQ 88

GO:0005737 "cytoplasm" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1559774 Zmat5 "zinc finger, matrin type 5" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ FQD    RK+HL G+QHL+AK +WYD   +      D   K  C +F
Sbjct:     1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60

Query:    62 VKTGFC 67
             + TG C
Sbjct:    61 LLTGKC 66

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1RFG8 LOC100519448 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 34/88 (38%), Positives = 46/88 (52%)

Query:     3 LGK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRF 61
             +GK Y+CDYCD+ F        +HL G+QHL+AK LWYD   +      D   K  C +F
Sbjct:     1 MGKRYFCDYCDRSF--------KHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKF 52

Query:    62 VKTGFCPFGDSCKYLHPKNNPAQNTGNQ 89
             + TG C FG +C++ H      Q    Q
Sbjct:    53 LLTGQCDFGSNCRFSHMSERDLQELSIQ 80

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0051922 CG31922 [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query:     4 GK-YYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFV 62
             GK YYCDYC    ++    RK H  GI H  AK+ +     +  +   +   K  C R+ 
Sbjct:     3 GKSYYCDYCCCFLKNDLNVRKLHNGGIAHAIAKSNYLKRYEDPKKILTEERQKTPCKRYF 62

Query:    63 KTGFCPFGDSCKYLH 77
              + +C F   CK+ H
Sbjct:    63 GS-YCKFETYCKFTH 76

GO:0003674 "molecular_function" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam06220	38	pfam06220, zf-U1, U1 zinc finger	6e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	2e-04
COG5152	259	COG5152, COG5152, Uncharacterized conserved protei	4e-04

>gnl|CDD|114912 pfam06220, zf-U1, U1 zinc finger

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 1  MPLGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWY 39
          MP  KYYCDYCD     D+   RK H  G +H      +Y
Sbjct: 1  MP--KYYCDYCDCYLTHDSPSVRKSHNGGRKHKDNVKDYY 38

This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Length = 38

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 58 CSRFVKTGFCPFGDSCKYLHPK 79
          C  F +TG C +GD CK+ H +
Sbjct: 6  CRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 57 VCSRFVKTGFCPFGDSCKYLHPK 79
          +C  F K G+CP GD CK+ HP 
Sbjct: 6  LCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 53  FPKGVCSRFVKTGFCPFGDSCKYLHPKNN 81
               VC  + +TG+C +GDSCK+LH +++
Sbjct: 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSD 167

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	99.95
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	99.58
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	99.09
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
COG5152	259	Uncharacterized conserved protein, contains RING a	98.7
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.16
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.13
smart00356	27	ZnF_C3H1 zinc finger.	97.73
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.37
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	96.89
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	96.85
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.18
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.84
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	93.39
KOG4727	193	consensus U1-like Zn-finger protein [General funct	93.31
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	92.19
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	91.2
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	86.83
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	80.05

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=99.95  E-value=3.4e-29  Score=212.31  Aligned_cols=141  Identities=21%  Similarity=0.264  Sum_probs=118.2

Q ss_pred             CCccccccccccc-cCChhhhhccCCCCcchHHHHHhhhccc-cCCCCCCCCcCccccccccccccCCCCCCceeccCCC
Q 026840            3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLN-ETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN   80 (232)
Q Consensus         3 mkkYYCDYCdk~f-~Ds~~~RK~Hl~G~kH~Raka~yY~qFk-DPetIL~EE~~K~pCk~f~~TG~C~FGdsCkFsH~~~   80 (232)
                      |+||||||||++| ||+++|||.|+.|++|++|+++||++|. +++++|.+|..+..|+.+   |+|.+..+|+|+|+.+
T Consensus         1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqAq~liD~~~~~~~~~~---g~~~~~~~~~~~~~~~   77 (165)
T KOG3454|consen    1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQAQKLIDETILRFIGKK---GQKVPFSNARFSAPPE   77 (165)
T ss_pred             CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccCCccccccccCCcc
Confidence            8999999999999 9999999999999999999999999885 888999999988888775   4899999999999987


Q ss_pred             CcCCcc---------------CCcCcccccccccccccccccccccccCCCCCCCCCccccccCcc---CCCCCCCCCCC
Q 026840           81 NPAQNT---------------GNQGLRATGFTDINARSSSVDQRIYLAGGSSFPGDMMRDSMGMSW---GNLPPSLKPPP  142 (232)
Q Consensus        81 ~~~qel---------------~~~~Lp~G~~edwl~~sl~~~~~~~l~~~~s~~~~~~~~~~~~~w---~~LPPSL~pPP  142 (232)
                      ..++.+               +.-.+|++.|++|++.     ++++....+...+......+++.|   ..+|||+++|+
T Consensus        78 ~~~~~~~pp~~~~~~~~~~~~~~P~mP~~~l~~p~~~-----~~p~~~~~p~~~i~~~~~~~~~~~~~~~~rpps~~~p~  152 (165)
T KOG3454|consen   78 PVKASIPPPPEMEAPARPGPLGMPMMPPGPLMNPMGF-----RPPPPKMSPEPIIMMGVRGPPGTIPPVRPRPPSMRAPK  152 (165)
T ss_pred             cccccCCCCcccCCCCCCCCcCCccCCCCCCCCcccc-----CCCCCCCCCCCccccccCCCCCCCCccCCCCccccCCC
Confidence            766554               3356788899999987     555555444444444455678889   99999999999


Q ss_pred             CCCCCCCCc
Q 026840          143 EGGYPLLPL  151 (232)
Q Consensus       143 ~gG~p~lp~  151 (232)
                      .|||++++.
T Consensus       153 ~~~~~~~~~  161 (165)
T KOG3454|consen  153 PGGWPLQPR  161 (165)
T ss_pred             CCCCCCCCC
Confidence            999999874

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.58  E-value=4.4e-16  Score=103.93  Aligned_cols=37  Identities=38%  Similarity=0.826  Sum_probs=25.5

Q ss_pred             CCccccccccccc-cCChhhhhccCCCCcchHHHHHhh
Q 026840            3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWY   39 (232)
Q Consensus         3 mkkYYCDYCdk~f-~Ds~~~RK~Hl~G~kH~Raka~yY   39 (232)
                      ||||||||||++| +|++++||.|++|.+|++|+++||
T Consensus         1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~y   38 (38)
T PF06220_consen    1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRYY   38 (38)
T ss_dssp             --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHHT
T ss_pred             CcCeecccccceecCCChHHHHHhhccHHHHHHHHHhC
Confidence            8999999999999 999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=99.09  E-value=1.4e-11  Score=106.04  Aligned_cols=42  Identities=29%  Similarity=0.664  Sum_probs=38.7

Q ss_pred             CCccccccccccc-cCChhhhhccCCCCcchHHHHHhhh-cccc
Q 026840            3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYD-SLNE   44 (232)
Q Consensus         3 mkkYYCDYCdk~f-~Ds~~~RK~Hl~G~kH~Raka~yY~-qFkD   44 (232)
                      |+|||||||+++| ||++++||.|+.|.+|.+++++||- .++|
T Consensus         1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY~~~a~d   44 (188)
T COG5136           1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYMEMAED   44 (188)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            8999999999999 9999999999999999999999994 4443

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.4e-09  Score=100.48  Aligned_cols=46  Identities=30%  Similarity=0.748  Sum_probs=41.4

Q ss_pred             cCCCCcchHHHHHhhhccccCCCCCCCCcCccccccccccccCCCCCCceeccCCCCcC
Q 026840           25 HLQGIQHLRAKALWYDSLNETNQTYPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA   83 (232)
Q Consensus        25 Hl~G~kH~Raka~yY~qFkDPetIL~EE~~K~pCk~f~~TG~C~FGdsCkFsH~~~~~~   83 (232)
                      +++...|+|+..+|.             +++++|++|.+||||+|||+|+|+|++++++
T Consensus       169 pira~~~~r~~~~~d-------------~qpDicKdykeTgycg~gdSckFlh~r~DyK  214 (313)
T KOG1813|consen  169 PIRAAMHTRAGERID-------------YQPDICKDYKETGYCGYGDSCKFLHDRSDYK  214 (313)
T ss_pred             ccchhhhhcccceee-------------cCchhhhhhHhhCcccccchhhhhhhhhhcc
Confidence            777777777777775             7899999999999999999999999999996

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.70  E-value=3.5e-09  Score=94.47  Aligned_cols=34  Identities=35%  Similarity=0.826  Sum_probs=31.6

Q ss_pred             CCCcCccccccccccccCCCCCCceeccCCCCcC
Q 026840           50 PDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA   83 (232)
Q Consensus        50 ~EE~~K~pCk~f~~TG~C~FGdsCkFsH~~~~~~   83 (232)
                      ..+++|++|++|.+||||+|||+|||+|+|+|++
T Consensus       136 viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         136 VIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             eeecCcccccchhhcccccCCchhhhhhhhhhhh
Confidence            3468999999999999999999999999999987

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.16  E-value=4.6e-07  Score=56.88  Aligned_cols=35  Identities=29%  Similarity=0.647  Sum_probs=30.2

Q ss_pred             CCccccccccccccCChhhhhccCCCCcchHHHHHh
Q 026840            3 LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALW   38 (232)
Q Consensus         3 mkkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~y   38 (232)
                      +++||||+|+++|.++.+- +.|+.|.+|.++.+.+
T Consensus         1 ~~~~~C~~C~~~~~~~~~~-~~H~~gk~H~~~~~~~   35 (35)
T smart00451        1 TGGFYCKLCNVTFTDEISV-EAHLKGKKHKKNVKKR   35 (35)
T ss_pred             CcCeEccccCCccCCHHHH-HHHHChHHHHHHHHcC
Confidence            4689999999999976666 9999999999987653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.13  E-value=4.9e-07  Score=55.92  Aligned_cols=25  Identities=44%  Similarity=1.152  Sum_probs=20.3

Q ss_pred             CccccccccccccCCCCCCceeccC
Q 026840           54 PKGVCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        54 ~K~pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      ...+|+.|.++|.|.||++|+|+|.
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccccChhhccCCccCCCCCcCccCC
Confidence            4579999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=97.73  E-value=1.7e-05  Score=47.22  Aligned_cols=22  Identities=55%  Similarity=1.491  Sum_probs=20.6

Q ss_pred             cccccccccccCCCCCCceeccC
Q 026840           56 GVCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        56 ~pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      .+|+.| ++|.|.+|++|+|+|.
T Consensus         5 ~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        5 ELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CcCcCc-cCCCCCCCCCcCCCCc
Confidence            489999 7999999999999997

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.37  E-value=8e-05  Score=45.31  Aligned_cols=27  Identities=37%  Similarity=0.794  Sum_probs=23.3

Q ss_pred             ccccccccccccCChhhhhccCCCCcch
Q 026840            5 KYYCDYCDKQFQDTYFARKRHLQGIQHL   32 (232)
Q Consensus         5 kYYCDYCdk~f~Ds~~~RK~Hl~G~kH~   32 (232)
                      +|||+.||+.|.| ..+-+.|++|.+|+
T Consensus         1 q~~C~~C~k~f~~-~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSS-ENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSS-HHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCC-HHHHHHHHccCCCC
Confidence            5999999999988 67779999998885

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=96.89  E-value=0.0014  Score=58.91  Aligned_cols=35  Identities=29%  Similarity=0.889  Sum_probs=29.9

Q ss_pred             CCCCcCccccccccccccCCCCCCceeccCCCCcC
Q 026840           49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA   83 (232)
Q Consensus        49 L~EE~~K~pCk~f~~TG~C~FGdsCkFsH~~~~~~   83 (232)
                      +...+.-++|..|.+||+|.||+.|+|-|...+..
T Consensus       171 ~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  171 NPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             CCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            34456778999999999999999999999977554

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=96.85  E-value=0.00032  Score=65.96  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             CCccccccccccccCChhhhhccCCCCcchHHHHHhhh
Q 026840            3 LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYD   40 (232)
Q Consensus         3 mkkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~yY~   40 (232)
                      -+|+|||||.+.|+|++..+.-|-+|.+|+.+++--..
T Consensus         8 ~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Krit   45 (336)
T KOG0150|consen    8 QPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRIT   45 (336)
T ss_pred             ccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHH
Confidence            37999999999999999999999999999998876553

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.18  E-value=0.0069  Score=59.17  Aligned_cols=32  Identities=28%  Similarity=0.691  Sum_probs=25.8

Q ss_pred             CCcCccccccccccccCCCCCCceeccCCCCcC
Q 026840           51 DGFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA   83 (232)
Q Consensus        51 EE~~K~pCk~f~~TG~C~FGdsCkFsH~~~~~~   83 (232)
                      .-..-+||+.|++ |.|+|+.+|||||--.-.+
T Consensus       136 Th~sMkpC~ffLe-g~CRF~enCRfSHG~~V~l  167 (486)
T KOG2185|consen  136 THESMKPCKFFLE-GRCRFGENCRFSHGLDVPL  167 (486)
T ss_pred             cchhhccchHhhc-cccccCcccccccCcccch
Confidence            3346689999996 9999999999999754443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.84  E-value=0.0065  Score=35.62  Aligned_cols=25  Identities=36%  Similarity=0.903  Sum_probs=22.0

Q ss_pred             cccccccccccCChhhhhccCCCCcc
Q 026840            6 YYCDYCDKQFQDTYFARKRHLQGIQH   31 (232)
Q Consensus         6 YYCDYCdk~f~Ds~~~RK~Hl~G~kH   31 (232)
                      |+|+-|++.|.+ ...-+.|++|.+|
T Consensus         1 ~~C~~C~~~f~s-~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSS-ENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESS-HHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCC-HHHHHHHHCcCCC
Confidence            799999999987 6777889999877

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=93.39  E-value=0.046  Score=31.63  Aligned_cols=19  Identities=37%  Similarity=0.852  Sum_probs=15.7

Q ss_pred             ccccccccccCCCCCCceeccC
Q 026840           57 VCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        57 pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      +||.+.+   |..+++|.|+|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            5886653   999999999995

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=93.31  E-value=0.028  Score=49.62  Aligned_cols=36  Identities=33%  Similarity=0.615  Sum_probs=29.5

Q ss_pred             CCccccccccccccCChhhhhccCCCCcchHHHHHhh
Q 026840            3 LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWY   39 (232)
Q Consensus         3 mkkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~yY   39 (232)
                      +.=||||-||+.++|+.+ =--|++|.+|+|+--.=+
T Consensus        73 ~~GyyCdVCdcvvKDSin-flDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSIN-FLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             cCceeeeecceeehhhHH-HHHHhccHHHHHHHhhhh
Confidence            346999999999999765 467999999999866544

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.19  E-value=0.071  Score=50.60  Aligned_cols=25  Identities=36%  Similarity=0.891  Sum_probs=23.2

Q ss_pred             cccccccccccCCCCCCceeccCCCC
Q 026840           56 GVCSRFVKTGFCPFGDSCKYLHPKNN   81 (232)
Q Consensus        56 ~pCk~f~~TG~C~FGdsCkFsH~~~~   81 (232)
                      .+|+.|.+ |+|+||+.|||+|..++
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            89999985 99999999999999885

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=91.20  E-value=0.11  Score=46.68  Aligned_cols=35  Identities=26%  Similarity=0.781  Sum_probs=29.1

Q ss_pred             CCCCcCccccccccccccCCC-CCCceeccCCCCcC
Q 026840           49 YPDGFPKGVCSRFVKTGFCPF-GDSCKYLHPKNNPA   83 (232)
Q Consensus        49 L~EE~~K~pCk~f~~TG~C~F-GdsCkFsH~~~~~~   83 (232)
                      ..+-+.-..|+.|.++|.|.| |++|||.|..++..
T Consensus       126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r  161 (332)
T KOG1677|consen  126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR  161 (332)
T ss_pred             CcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence            344456789999999999999 99999998876654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=86.83  E-value=0.3  Score=29.63  Aligned_cols=15  Identities=40%  Similarity=0.897  Sum_probs=13.1

Q ss_pred             CCCcccccccccccc
Q 026840            2 PLGKYYCDYCDKQFQ   16 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~   16 (232)
                      +.++|-|++|++.|.
T Consensus        11 ~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen   11 GEKPYKCPYCGKSFS   25 (26)
T ss_dssp             SSSSEEESSSSEEES
T ss_pred             CCCCCCCCCCcCeeC
Confidence            578999999999983

...

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=80.05  E-value=0.57  Score=44.67  Aligned_cols=26  Identities=38%  Similarity=0.950  Sum_probs=22.8

Q ss_pred             CccccccccccccCCCCCC-ceeccCCC
Q 026840           54 PKGVCSRFVKTGFCPFGDS-CKYLHPKN   80 (232)
Q Consensus        54 ~K~pCk~f~~TG~C~FGds-CkFsH~~~   80 (232)
                      .-.+||+|++ |.|.=||. |||-|+..
T Consensus        36 ~~eVCReF~r-n~C~R~d~~CkfaHP~~   62 (331)
T KOG2494|consen   36 TLEVCREFLR-NTCSRGDRECKFAHPPK   62 (331)
T ss_pred             HHHHHHHHHh-ccccCCCccccccCCCC
Confidence            3479999996 99999999 99999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	1e-10
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-04
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	9e-04

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Length = 77

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 1  MPLGKYYCDYCDKQFQ-DTYFARKRHLQGIQHLRAKALWYDSLNE 44
          MP  K+YCDYCD     D+   RK H  G +H      +Y    E
Sbjct: 1  MP--KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWME 43

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 49 YPDGFPKGVCSRFVKTGFCPFGDSCKYLHPKN 80
              +   +C +F   G CP+G  C ++H   
Sbjct: 44 RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Length = 124

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 3  LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRA-KAL 37
           G + C  C + F D+    K H +   H +  K L
Sbjct: 48 GGLHRCLACARYFIDST-NLKTHFRSKDHKKRLKQL 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	99.61
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	97.6
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	97.0
2rhk_C	72	Cleavage and polyadenylation specificity factor su	96.82
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	96.51
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.38
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.14
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.14
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.78
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	95.25
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	95.07
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.77
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	94.54
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	94.0
2rhk_C	72	Cleavage and polyadenylation specificity factor su	93.94
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	93.57
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	89.38
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	89.08
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	86.08
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	82.09
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	82.42

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=99.61  E-value=7.4e-17  Score=121.67  Aligned_cols=42  Identities=36%  Similarity=0.675  Sum_probs=40.4

Q ss_pred             CCccccccccccc-cCChhhhhccCCCCcchHHHHHhhhcccc
Q 026840            3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLNE   44 (232)
Q Consensus         3 mkkYYCDYCdk~f-~Ds~~~RK~Hl~G~kH~Raka~yY~qFkD   44 (232)
                      |+||||||||++| +|++++||.|++|.+|++|+++||++|.+
T Consensus         1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~   43 (77)
T 3cw1_L            1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWME   43 (77)
T ss_pred             CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            8999999999999 99999999999999999999999998864

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=97.60  E-value=3.1e-05  Score=55.24  Aligned_cols=32  Identities=19%  Similarity=0.683  Sum_probs=27.5

Q ss_pred             CcCccccccccccccCCCCCCceeccCCCCcC
Q 026840           52 GFPKGVCSRFVKTGFCPFGDSCKYLHPKNNPA   83 (232)
Q Consensus        52 E~~K~pCk~f~~TG~C~FGdsCkFsH~~~~~~   83 (232)
                      .+...+|+.|+.+|.|.||++|+|+|...+..
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~   40 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELR   40 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence            35668999999999999999999999976553

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=97.00  E-value=0.0001  Score=52.49  Aligned_cols=27  Identities=30%  Similarity=0.971  Sum_probs=0.0

Q ss_pred             ccccccccccccCCCCCCceeccCCCC
Q 026840           55 KGVCSRFVKTGFCPFGDSCKYLHPKNN   81 (232)
Q Consensus        55 K~pCk~f~~TG~C~FGdsCkFsH~~~~   81 (232)
                      ..+|+.|..+|+|.||+.|+|.|..++
T Consensus        50 ~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           50 TELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             ---------------------------
T ss_pred             CCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            478999999999999999999998654

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=96.82  E-value=0.00039  Score=50.52  Aligned_cols=28  Identities=32%  Similarity=0.820  Sum_probs=23.9

Q ss_pred             cCccccccccccccCCCCCCceeccCCCC
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNN   81 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~~~~   81 (232)
                      ....+|+.|++ |.|..|++|+|+|+.+.
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~   41 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM   41 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence            45678999998 99999999999999654

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.51  E-value=0.001  Score=48.44  Aligned_cols=27  Identities=33%  Similarity=0.898  Sum_probs=21.3

Q ss_pred             CccccccccccccCCCCCCceeccCCCC
Q 026840           54 PKGVCSRFVKTGFCPFGDSCKYLHPKNN   81 (232)
Q Consensus        54 ~K~pCk~f~~TG~C~FGdsCkFsH~~~~   81 (232)
                      ...+|+.|++ |.|..|+.|+|+|+...
T Consensus         9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A            9 KTVVCKHWLR-GLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             TTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred             cceeCHhHcc-CcCCCCCCCCCcccccc
Confidence            3467888887 88888888888888654

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.38  E-value=0.0015  Score=49.88  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=13.6

Q ss_pred             cccccccccccCCCCCCceeccC
Q 026840           56 GVCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        56 ~pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      .+|+.|..+|.|.+|+.|+|+|.
T Consensus        37 ~~C~~f~~~G~C~~G~~C~f~H~   59 (98)
T 2cqe_A           37 FPCKLYHTTGNCINGDDCMFSHD   59 (98)
T ss_dssp             SBCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcCcCcccCCcCCCCCCCcccCC
Confidence            45665555566666666666665

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.14  E-value=0.0013  Score=50.32  Aligned_cols=25  Identities=32%  Similarity=0.947  Sum_probs=22.1

Q ss_pred             cCccccccccccccCCCCCCceeccC
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      ....+|+.|+ +|.|.+|+.|+|+|+
T Consensus        11 ~k~~lC~~f~-~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFYI-TGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             CCCccCcccc-cCcCCCCCCCCCCCC
Confidence            4567999996 799999999999994

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.14  E-value=0.0017  Score=48.04  Aligned_cols=22  Identities=45%  Similarity=1.180  Sum_probs=21.1

Q ss_pred             cccccccccccCCCCCCceeccC
Q 026840           56 GVCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        56 ~pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      .+|+.| .+|.|.||+.|.|-|-
T Consensus        21 ~LC~~~-~~G~C~~G~~C~FAHG   42 (69)
T 2d9m_A           21 SICDRY-MNGTCPEGNSCKFAHG   42 (69)
T ss_dssp             SBCHHH-HHSCCSSCSSCSSBSS
T ss_pred             ccCccc-CcCCCCCCCccCCcCC
Confidence            899999 7899999999999998

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.78  E-value=0.0025  Score=51.32  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             CCCccccccccccccCChhhhhccCCCCcchHHHHHh
Q 026840            2 PLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALW   38 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~y   38 (232)
                      +++.|||..|+++|.+ .+.-+.|.++..|++.++..
T Consensus        47 GekpfyC~~C~K~F~~-~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           47 GGGLHRCLACARYFID-STNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             GGGCSEETTTTEECSS-HHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcceEcccCcchhCC-HHHHHHHHhhhhhhHHHHHh
Confidence            4679999999999977 66779999999999998876

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.25  E-value=0.008  Score=43.64  Aligned_cols=28  Identities=25%  Similarity=0.551  Sum_probs=24.1

Q ss_pred             ccccccccccccCCCCCCceeccCCCCcC
Q 026840           55 KGVCSRFVKTGFCPFGDSCKYLHPKNNPA   83 (232)
Q Consensus        55 K~pCk~f~~TG~C~FGdsCkFsH~~~~~~   83 (232)
                      ..+|+.|+++|.|. |+.|+|+|..++..
T Consensus        38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A           38 MPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             SCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             CCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            35899999889999 99999999976543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=95.07  E-value=0.0093  Score=42.65  Aligned_cols=27  Identities=30%  Similarity=0.879  Sum_probs=22.7

Q ss_pred             ccccccccccccCCCCCC-ceeccCCCCc
Q 026840           55 KGVCSRFVKTGFCPFGDS-CKYLHPKNNP   82 (232)
Q Consensus        55 K~pCk~f~~TG~C~FGds-CkFsH~~~~~   82 (232)
                      ..+|++|+ .|.|.-|++ |+|+|+.+..
T Consensus         6 ~~vC~~f~-~G~C~rg~~~C~f~H~~~~~   33 (70)
T 3d2q_A            6 LEVCREYQ-RGNCNRGENDCRFAHPADST   33 (70)
T ss_dssp             EEBCHHHH-TTCCSSCTTTCSSBCCCTTS
T ss_pred             chhCHHHh-cCCCCCCCCCCCCccCcccc
Confidence            36899996 699999995 9999997644

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.77  E-value=0.0061  Score=47.84  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             CccccccccccccCChhhhhccCCCCcchHHHHHhhh
Q 026840            4 GKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALWYD   40 (232)
Q Consensus         4 kkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~yY~   40 (232)
                      +.+||.+|+..|. +.+.++.|.+|.+|.++.+.|+.
T Consensus        31 ~~~~C~~C~v~~~-S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           31 SDTQCKVCSAVLI-SESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             CSSEETTTTEECC-SHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeC-CHHHHHHHHCcHHHHHHHHHHhc
Confidence            5799999999998 48999999999999999998885

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=94.54  E-value=0.015  Score=43.50  Aligned_cols=27  Identities=37%  Similarity=0.875  Sum_probs=23.6

Q ss_pred             CccccccccccccCCCCC-CceeccCCCC
Q 026840           54 PKGVCSRFVKTGFCPFGD-SCKYLHPKNN   81 (232)
Q Consensus        54 ~K~pCk~f~~TG~C~FGd-sCkFsH~~~~   81 (232)
                      ...+|++|++ |.|.=|| .|+|+|+.+.
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~   35 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKS   35 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence            3478999998 9999997 9999999764

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.00  E-value=0.012  Score=45.11  Aligned_cols=28  Identities=32%  Similarity=0.907  Sum_probs=23.3

Q ss_pred             CccccccccccccCCCCC-CceeccCCCCc
Q 026840           54 PKGVCSRFVKTGFCPFGD-SCKYLHPKNNP   82 (232)
Q Consensus        54 ~K~pCk~f~~TG~C~FGd-sCkFsH~~~~~   82 (232)
                      ...+|++|++ |.|.-|+ .|+|+|+....
T Consensus        19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~   47 (98)
T 2e5s_A           19 KLEVCREFQR-GNCARGETDCRFAHPADST   47 (98)
T ss_dssp             EEEBCSHHHH-TCCSSHHHHCSSBCCSSCC
T ss_pred             hhhhhHHHhc-CcCCCCCCCCCCcCCchhc
Confidence            3468999997 9999999 69999997654

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=93.94  E-value=0.019  Score=41.53  Aligned_cols=28  Identities=25%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             CccccccccccccCCCCCCceeccCCCCc
Q 026840           54 PKGVCSRFVKTGFCPFGDSCKYLHPKNNP   82 (232)
Q Consensus        54 ~K~pCk~f~~TG~C~FGdsCkFsH~~~~~   82 (232)
                      ...+|+.|++.|.|.+ +.|+|+|..+..
T Consensus        43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           43 KMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            3468999998899999 999999997654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=93.57  E-value=0.023  Score=43.11  Aligned_cols=27  Identities=37%  Similarity=0.865  Sum_probs=24.0

Q ss_pred             ccccccccccccCCCCC-CceeccCCCCc
Q 026840           55 KGVCSRFVKTGFCPFGD-SCKYLHPKNNP   82 (232)
Q Consensus        55 K~pCk~f~~TG~C~FGd-sCkFsH~~~~~   82 (232)
                      ..+|++|++ |.|.=|+ .|||+|+.+..
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~   44 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSC   44 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence            568999998 9999998 99999997653

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=89.38  E-value=0.09  Score=37.46  Aligned_cols=26  Identities=38%  Similarity=0.864  Sum_probs=22.3

Q ss_pred             cCccccccccccccCCCCCCceeccCCC
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHPKN   80 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~~~   80 (232)
                      ..-.+|++|++ |.|.-| .|+|+|..+
T Consensus        40 ~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A           40 NTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             TEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             CcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            34578999998 999999 999999844

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=89.08  E-value=0.11  Score=36.42  Aligned_cols=28  Identities=32%  Similarity=0.901  Sum_probs=25.1

Q ss_pred             cCccccccccccccCCCCCCceeccCCC
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHPKN   80 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~~~   80 (232)
                      ..-.+|++|-.-|+|..|..|.++|+..
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4568999999999999999999999954

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.08  E-value=0.22  Score=38.07  Aligned_cols=28  Identities=36%  Similarity=0.756  Sum_probs=23.8

Q ss_pred             cCccccccccccccCCCCCCceeccCCCCc
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHPKNNP   82 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~~~~~   82 (232)
                      ..-.+|++|++ |.|..+ .|+|+|.....
T Consensus        54 ~~~~vC~~flk-G~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           54 NTVTVCMDYIK-GRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             CEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred             Cccccchhhcc-CCCCCC-CcCccCChHHH
Confidence            45689999997 999999 99999996543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=82.09  E-value=0.62  Score=26.48  Aligned_cols=16  Identities=25%  Similarity=0.768  Sum_probs=13.7

Q ss_pred             CCCccccccccccccC
Q 026840            2 PLGKYYCDYCDKQFQD   17 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~D   17 (232)
                      +.++|.|++|++.|..
T Consensus         8 ~~k~~~C~~C~k~f~~   23 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSR   23 (37)
T ss_dssp             CSSSBCCTTTCCCBSS
T ss_pred             CCCCccCCCCCcccCc
Confidence            4678999999999954

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=82.42  E-value=0.29  Score=26.20  Aligned_cols=15  Identities=40%  Similarity=0.946  Sum_probs=12.7

Q ss_pred             CCccccccccccccC
Q 026840            3 LGKYYCDYCDKQFQD   17 (232)
Q Consensus         3 mkkYYCDYCdk~f~D   17 (232)
                      ++.|-|++|++.|.+
T Consensus         1 ~k~~~C~~C~k~f~~   15 (30)
T 2lvr_A            1 MKPYVCIHCQRQFAD   15 (30)
Confidence            468999999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d2vrda1	61	g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human	1e-12
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	6e-04
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.001
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 1  MPLGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSLNE 44
          MP  K+YCDYCD     D+   RK H  G +H      +Y    E
Sbjct: 1  MP--KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWME 43

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 6e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 3  LGKYYCDYCDKQFQDTYFARKRHLQGIQHLRA-KAL 37
           G + C  C + F D+    K H +   H +  K L
Sbjct: 13 GGLHRCLACARYFIDST-NLKTHFRSKDHKKRLKQL 47

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 57 VCSRFVKTGFCPFGDSCKYLH 77
          +C  F   GFCP+G  C ++H
Sbjct: 10 LCRTFHTIGFCPYGPRCHFIH 30

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 58 CSRFVKTGFCPFGDSCKYLH 77
          C  F ++G C +G+ C++ H
Sbjct: 9  CRPFEESGTCKYGEKCQFAH 28

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 58 CSRFVKTGFCPFGDSCKYLH 77
          C  + ++G C +G  C++ H
Sbjct: 12 CRTYSESGRCRYGAKCQFAH 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	99.75
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.55
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.51
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.26
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.27
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	95.99
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.67
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.48
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	89.18
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	86.26
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	85.77
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	84.12
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	83.12
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	81.94
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	81.64
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	81.03
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	80.87
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	80.65

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.3e-20  Score=130.58  Aligned_cols=50  Identities=34%  Similarity=0.648  Sum_probs=44.6

Q ss_pred             CCccccccccccc-cCChhhhhccCCCCcchHHHHHhhhcc-ccCCCCCCCC
Q 026840            3 LGKYYCDYCDKQF-QDTYFARKRHLQGIQHLRAKALWYDSL-NETNQTYPDG   52 (232)
Q Consensus         3 mkkYYCDYCdk~f-~Ds~~~RK~Hl~G~kH~Raka~yY~qF-kDPetIL~EE   52 (232)
                      |+||||||||++| ||++++||.|++|++|++|+++||++| ++.++.|.++
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~~~~~~~aq~l~d~   52 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK   52 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTSSSSSSCCCSHHHH
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7799999999999 899999999999999999999999999 5555665444

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=2e-05  Score=50.88  Aligned_cols=31  Identities=19%  Similarity=0.742  Sum_probs=26.6

Q ss_pred             CCcCccccccccccccCCCCCCceeccCCCC
Q 026840           51 DGFPKGVCSRFVKTGFCPFGDSCKYLHPKNN   81 (232)
Q Consensus        51 EE~~K~pCk~f~~TG~C~FGdsCkFsH~~~~   81 (232)
                      ..+..++|+.|.++|.|.||+.|.|.|..++
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~E   35 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGE   35 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHH
Confidence            3456789999999999999999999998443

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=6.8e-06  Score=51.73  Aligned_cols=28  Identities=32%  Similarity=1.089  Sum_probs=24.7

Q ss_pred             cCccccccccccccCCCCCCceeccCCC
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHPKN   80 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~~~   80 (232)
                      +.-++|+.|.++|.|.||+.|.|.|..+
T Consensus         6 yKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           6 YKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             ccchhccccCCCCcCCCCCcccCcCCCC
Confidence            3458999999999999999999999854

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=2.7e-05  Score=49.29  Aligned_cols=28  Identities=25%  Similarity=0.866  Sum_probs=25.0

Q ss_pred             cCccccccccccccCCCCCCceeccCCC
Q 026840           53 FPKGVCSRFVKTGFCPFGDSCKYLHPKN   80 (232)
Q Consensus        53 ~~K~pCk~f~~TG~C~FGdsCkFsH~~~   80 (232)
                      +..++|+.|.++|.|.||+.|.|-|-.+
T Consensus         4 yKT~lC~~~~~~g~C~~G~~C~FAHg~~   31 (36)
T d1rgoa1           4 YKTELCRPFEESGTCKYGEKCQFAHGFH   31 (36)
T ss_dssp             TTSSBCHHHHHHSCCTTGGGCSSBSSGG
T ss_pred             cchhhCcchhcCCcCCCCCcCCCcCCHH
Confidence            4568999999999999999999999844

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00052  Score=48.61  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             CCCccccccccccccCChhhhhccCCCCcchHHHHHh
Q 026840            2 PLGKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKALW   38 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~y   38 (232)
                      ++..|||-.|+|+|.+ ..+.+.|.++.+|+|++++-
T Consensus        12 G~gqfYCv~C~K~F~s-e~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          12 GGGLHRCLACARYFID-STNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             GGGCSEETTTTEECSS-HHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCEEecccccCccCC-HHHHHHHHcccHHHHHHHHh
Confidence            3567999999999977 78999999999999998876

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0015  Score=39.76  Aligned_cols=26  Identities=31%  Similarity=0.890  Sum_probs=23.1

Q ss_pred             CcCccccccccccccCCCCCCceeccC
Q 026840           52 GFPKGVCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        52 E~~K~pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      +..|.+||.|+ +|+|.=|++|.|.|.
T Consensus         3 ~kkkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           3 PKKRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             SCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             chhhhhhhhhe-eeeecCCcCcccccC
Confidence            45688999999 599999999999995

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0012  Score=45.56  Aligned_cols=22  Identities=36%  Similarity=0.800  Sum_probs=20.5

Q ss_pred             ccccccccccCCCCCCceeccC
Q 026840           57 VCSRFVKTGFCPFGDSCKYLHP   78 (232)
Q Consensus        57 pCk~f~~TG~C~FGdsCkFsH~   78 (232)
                      |||.|-.++.|-=||+|||||.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            8999998889999999999995

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.054  Score=33.24  Aligned_cols=16  Identities=25%  Similarity=0.582  Sum_probs=14.2

Q ss_pred             CCCccccccccccccC
Q 026840            2 PLGKYYCDYCDKQFQD   17 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~D   17 (232)
                      +.|+|-|++|++.|..
T Consensus         5 gekP~~C~~C~k~F~~   20 (36)
T d2ct1a2           5 GEKPYECYICHARFTQ   20 (36)
T ss_dssp             CCCSEECTTTCCEESC
T ss_pred             CCCCEeCCCCcccccc
Confidence            6799999999999944

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.18  E-value=0.045  Score=33.70  Aligned_cols=16  Identities=19%  Similarity=0.492  Sum_probs=14.0

Q ss_pred             CCCccccccccccccC
Q 026840            2 PLGKYYCDYCDKQFQD   17 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~D   17 (232)
                      +.|+|-|++|+|.|..
T Consensus         4 GekPy~C~~C~k~F~~   19 (35)
T d1srka_           4 GKRPFVCRICLSAFTT   19 (35)
T ss_dssp             CCSCEECSSSCCEESS
T ss_pred             CCccccCCCCCCcccC
Confidence            5789999999999954

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.26  E-value=0.077  Score=33.24  Aligned_cols=15  Identities=33%  Similarity=0.715  Sum_probs=12.9

Q ss_pred             CCccccccccccccC
Q 026840            3 LGKYYCDYCDKQFQD   17 (232)
Q Consensus         3 mkkYYCDYCdk~f~D   17 (232)
                      .|+|.|++|+|.|..
T Consensus         3 ~Kpy~C~~Cgk~F~~   17 (39)
T d2epsa1           3 GKPYICQSCGKGFSR   17 (39)
T ss_dssp             SCCEECSSSCCEESS
T ss_pred             CCCccCCCCCCCcCC
Confidence            589999999999933

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.77  E-value=0.11  Score=30.54  Aligned_cols=12  Identities=42%  Similarity=0.988  Sum_probs=11.5

Q ss_pred             Cccccccccccc
Q 026840            4 GKYYCDYCDKQF   15 (232)
Q Consensus         4 kkYYCDYCdk~f   15 (232)
                      |+|-|++|+|.|
T Consensus         1 Kpy~C~~C~k~F   12 (29)
T d1sp1a_           1 KKFACPECPKRF   12 (29)
T ss_dssp             CCSCCTTTTCCC
T ss_pred             CCEECCcCCCee
Confidence            689999999999

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.12  E-value=0.12  Score=30.62  Aligned_cols=22  Identities=32%  Similarity=0.726  Sum_probs=16.0

Q ss_pred             Ccccccc--ccccccCChhhhhccC
Q 026840            4 GKYYCDY--CDKQFQDTYFARKRHL   26 (232)
Q Consensus         4 kkYYCDY--Cdk~f~Ds~~~RK~Hl   26 (232)
                      |+|.|+|  |+|.|.. .+..+.|.
T Consensus         1 Kp~~C~~~gC~k~F~~-~~~L~~H~   24 (29)
T d1a1ia1           1 RPYACPVESCDRRFSR-SADLTRHI   24 (29)
T ss_dssp             CCEECCSTTCCCEESS-HHHHHHHT
T ss_pred             CCeECCCCCCCcEECc-hhHhhhhc
Confidence            6899999  9999954 33455553

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=83.12  E-value=0.16  Score=34.48  Aligned_cols=33  Identities=21%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             CccccccccccccCChhhhhccCCCCcchHHHHH
Q 026840            4 GKYYCDYCDKQFQDTYFARKRHLQGIQHLRAKAL   37 (232)
Q Consensus         4 kkYYCDYCdk~f~Ds~~~RK~Hl~G~kH~Raka~   37 (232)
                      +-.||+-|+..|.. +.+-..|-.|..|.++.++
T Consensus        20 ~nk~C~lCn~~Fns-~~~AqsHY~GK~H~K~lk~   52 (55)
T d1zu1a2          20 RSKCCPVCNMTFSS-PVVAESHYIGKTHIKNLRL   52 (55)
T ss_dssp             TTTEETTTTEECSS-HHHHHHHHTSHHHHHHHHH
T ss_pred             chhhhhhhhcccCC-HHHHHHHhhhhHHHHHHHH
Confidence            45699999999965 8889999999999987664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.94  E-value=0.16  Score=30.61  Aligned_cols=14  Identities=50%  Similarity=1.016  Sum_probs=12.3

Q ss_pred             Ccccccc--ccccccC
Q 026840            4 GKYYCDY--CDKQFQD   17 (232)
Q Consensus         4 kkYYCDY--Cdk~f~D   17 (232)
                      ++|-|+|  |+|.|..
T Consensus         2 rP~~C~~pgC~k~F~r   17 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVR   17 (32)
T ss_dssp             CSBCCCCTTCCCCBSS
T ss_pred             cCeECcCCCCCCeeCC
Confidence            7899999  9999944

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.64  E-value=0.14  Score=30.01  Aligned_cols=15  Identities=20%  Similarity=0.653  Sum_probs=12.8

Q ss_pred             CCccccccccccccC
Q 026840            3 LGKYYCDYCDKQFQD   17 (232)
Q Consensus         3 mkkYYCDYCdk~f~D   17 (232)
                      .|+|-|++|+|.|..
T Consensus         1 EKPy~C~~C~k~F~~   15 (28)
T d1a1ia2           1 QKPFQCRICMRNFSR   15 (28)
T ss_dssp             CCCEECTTTCCEESC
T ss_pred             CcCccCCCCcCEecc
Confidence            378999999999943

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=0.21  Score=30.49  Aligned_cols=16  Identities=38%  Similarity=0.850  Sum_probs=13.6

Q ss_pred             CCCccccccccccccC
Q 026840            2 PLGKYYCDYCDKQFQD   17 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~D   17 (232)
                      ..|+|-|++|+|.|..
T Consensus         9 ~ekpy~C~~CgK~F~~   24 (38)
T d2cota2           9 ERRRYKCDECGKSFSH   24 (38)
T ss_dssp             CSCSSBCSSSCCBCSC
T ss_pred             CCCCEecCCCCceeeC
Confidence            4689999999999933

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.87  E-value=0.26  Score=29.68  Aligned_cols=16  Identities=31%  Similarity=0.524  Sum_probs=13.9

Q ss_pred             CCCccccccccccccC
Q 026840            2 PLGKYYCDYCDKQFQD   17 (232)
Q Consensus         2 ~mkkYYCDYCdk~f~D   17 (232)
                      +.|+|-|++|++.|..
T Consensus         4 gekpy~C~~Cgk~F~~   19 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSR   19 (33)
T ss_dssp             TCCCEECSSSCCEESS
T ss_pred             CCCCeeCCCCCCEeCc
Confidence            5789999999999944

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.65  E-value=0.24  Score=29.53  Aligned_cols=22  Identities=36%  Similarity=0.785  Sum_probs=16.0

Q ss_pred             CCccccccccccccCChhhhhcc
Q 026840            3 LGKYYCDYCDKQFQDTYFARKRH   25 (232)
Q Consensus         3 mkkYYCDYCdk~f~Ds~~~RK~H   25 (232)
                      .|+|-||.|++.|..+ ..||.|
T Consensus         1 EkPf~C~~CgrkFArs-derkRH   22 (28)
T d1a1ia3           1 EKPFACDICGRKFARS-DERKRH   22 (28)
T ss_dssp             CCCEECTTTCCEESSH-HHHHHH
T ss_pred             CCCcccchhhhhhhcc-hhhhhh
Confidence            3789999999999542 345555