Citrus Sinensis ID: 026843

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MSQPKTMTNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHccccEEccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHcccccccccccccccccccEEccccEEEEccccHHHccccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msqpktmtNKLAIRRrevgegstsdnssytssssgesmSSKMRLANKIinsssvstgthdESVKVAEKLLHehdnievhyfttnssnsnntvricsdcnttttplwrsgprgpkslcnacGIRQRKARKAMQAAAEsgtttakdnssfSKIKlqnnmekkprtshvaqykkvqcntpdpdpphheyrsqrkLCFKDFAlslssnsalkqvfpRDVEEAAILLMELSCGFSHT
Flexible Loop (DISEMBL)
msqpktmtnklairrrevgegstsdnssytssssgesmSSKMRLANKIInsssvstgthDESVKVAEKLLHEHDNIEVHyfttnssnsnntVRICSDCNTtttplwrsgprgpkslCNACGIRQRKARKAMQAAAesgtttakdnssfskiklqnnmekkprtshVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Low Complexity Region (SEG)
MSQPKTMTNKLAIRRREVGEGstsdnssytssssgesmssKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFttnssnsnntVRICSDCNTTTTPLWRSGPRGPKSLCNACGIrqrkarkamqaaaESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Disordered region (IsUnstruct)
******************************************************************EKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWR********LCNACG*********************************************************************KLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCG****
Disordered Region (DISOPRED)
************************************************************************************************DCNTTTTPLWRSGPRGPKSLCNACGIRQ*********************************************************************************************AAILLMELSCGFSHT
Disordered Region (DISEMBL)
MSQPKTMTNKLAIRRRE************************MRLANKIINSS*********SVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGI************************SFSKIKLQNN************YKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Disordered Region (DISPRO)
*******************************************************************************************VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAES***************************************************QRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQPKTMTNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9SZI6	352	Putative GATA transcripti	yes	no	0.607	0.400	0.443	4e-22
Q5HZ36	398	GATA transcription factor	no	no	0.176	0.103	0.853	5e-17
Q8LC59	120	GATA transcription factor	no	no	0.219	0.425	0.568	6e-13
Q9FJ10	139	GATA transcription factor	no	no	0.202	0.338	0.595	3e-12
Q8LG10	149	GATA transcription factor	no	no	0.25	0.389	0.517	9e-12
Q6QPM2	211	GATA transcription factor	no	no	0.232	0.255	0.551	1e-11
Q8VZP4	308	GATA transcription factor	no	no	0.202	0.152	0.595	3e-11
Q8LC79	295	GATA transcription factor	no	no	0.185	0.145	0.651	5e-11
Q9LIB5	190	GATA transcription factor	no	no	0.176	0.215	0.682	5e-11
Q6DBP8	303	GATA transcription factor	no	no	0.202	0.155	0.595	5e-11

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 93/169 (55%), Gaps = 28/169 (16%)

Query: 84  NSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAE----SGT 139
           N  N++  +RICSDCNTT TPLWRSGPRGPKSLCNACGIRQRKAR+A  A A     SG 
Sbjct: 190 NGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMATATATAVSGV 249

Query: 140 TTAKDNSS--------------FSKIKLQNNMEKKPRT---SHVAQYKKVQCNTPDPDPP 182
           +                      S + L+ N  K+  T   + +A+  + Q N+      
Sbjct: 250 SPPVMKKKMQNKNKISNGVYKILSPLPLKVNTCKRMITLEETALAEDLETQSNST----- 304

Query: 183 HHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSH 231
                S   + F D AL LS +SA +QVFP+D +EAAILLM LS G  H
Sbjct: 305 --MLSSSDNIYFDDLALLLSKSSAYQQVFPQDEKEAAILLMALSHGMVH 351

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 38/41 (92%)

Query: 86  SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           SN+N  +R+CSDCNTT TPLWRSGPRGPKSLCNACGIRQRK
Sbjct: 223 SNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 80  YFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 130
           Y +        T+R CS+C TT TP+WR GP GPKSLCNACGIR RK R++
Sbjct: 13  YVSVRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRS 63

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query: 84  NSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 130
           N+++ N+  + C+DC T+ TPLWR GP GPKSLCNACGIR RK R+ 
Sbjct: 27  NNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG 73

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 74  DNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM 131
           D IE H  ++++   +N  + C+ C T+ TPLWR GP GPKSLCNACGIR RK R+ +
Sbjct: 22  DAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTL 79

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 4/58 (6%)

Query: 89  NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIR----QRKARKAMQAAAESGTTTA 142
           N   R C++C+TT+TPLWR+GPRGPKSLCNACGIR    +R+A  A  + +  G+T A
Sbjct: 71  NLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNSTSGGGSTAA 128

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZP4|GAT10_ARATH GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query: 82  TTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 128
           T  SS S+  VRIC+ C T TTP WR GP GPK+LCNACG+R +  R
Sbjct: 207 TLESSKSDGIVRICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGR 253

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 92  VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAA 134
            R C++C+TT+TPLWR+GPRGPKSLCNACGIR +K  +   AA
Sbjct: 151 ARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAA 193

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIB5|GAT17_ARATH GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 31/41 (75%)

Query: 90  NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 130
           +T R C DC T  TPLWR GP GPKSLCNACGI+ RK R+A
Sbjct: 39  DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQA 79

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query: 82  TTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 128
           T  +SNS+  VR C+ C TT TP WR GP GPK+LCNACG+R R  R
Sbjct: 209 TLEASNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGR 255

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224088836	234	predicted protein [Populus trichocarpa]	0.849	0.841	0.519	9e-41
118487597	303	unknown [Populus trichocarpa]	0.849	0.650	0.519	1e-40
255550794	186	conserved hypothetical protein [Ricinus	0.793	0.989	0.538	1e-35
356554076	306	PREDICTED: putative GATA transcription f	0.905	0.686	0.449	1e-34
118489347	303	unknown [Populus trichocarpa x Populus d	0.573	0.438	0.671	5e-34
118488977	306	unknown [Populus trichocarpa x Populus d	0.577	0.437	0.659	6e-34
225429550	306	PREDICTED: putative GATA transcription f	0.875	0.663	0.420	1e-32
255546095	312	hypothetical protein RCOM_1046780 [Ricin	0.909	0.676	0.425	6e-31
147805325	211	hypothetical protein VITISV_032017 [Viti	0.862	0.947	0.432	2e-29
356556282	315	PREDICTED: putative GATA transcription f	0.810	0.596	0.412	6e-29

>gi|224088836|ref|XP_002308561.1| predicted protein [Populus trichocarpa] gi|222854537|gb|EEE92084.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 13/210 (6%)

Query: 25  DNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTN 84
           D +  +  SS + M SKMRL  K+ NS+   T            +L  H+    +    +
Sbjct: 36  DGAEESGESSVKWMPSKMRLMQKMTNSNCSETDHMPMKF-----MLKFHNQQYQNNEINS 90

Query: 85  SSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK--ARKAMQAAAESGTTTA 142
           SSNSN+ +R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRK     A  AAA +GT  A
Sbjct: 91  SSNSNSNIRVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANGTVIA 150

Query: 143 KDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLS 202
            + SS ++    NN  KK RT+HV+Q KK+        PP    +SQ+KLCFK+ ALSLS
Sbjct: 151 IEASSSTRSTKVNNKVKKSRTNHVSQNKKLS------KPPESSLQSQKKLCFKNLALSLS 204

Query: 203 SNSALKQVFPRDVEEAAILLMELSCGFSHT 232
            N AL+QV P DVEEAAILLMELSCGF H+
Sbjct: 205 KNPALQQVLPHDVEEAAILLMELSCGFIHS 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487597|gb|ABK95624.1| unknown [Populus trichocarpa]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 134/210 (63%), Gaps = 13/210 (6%)

Query: 25  DNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTN 84
           D +  +  SS + M SKMRL  K+ NS+   T            +L  H+    +    +
Sbjct: 105 DGAEESGESSVKWMPSKMRLMQKMTNSNCSETDHMPMKF-----MLKFHNQQYQNNEINS 159

Query: 85  SSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK--ARKAMQAAAESGTTTA 142
           SSNSN+ +R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRK     A  AAA +GT  A
Sbjct: 160 SSNSNSNIRVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANGTVIA 219

Query: 143 KDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLS 202
            + SS ++    NN  KK RT+HV+Q KK+        PP    +SQ+KLCFK+ ALSLS
Sbjct: 220 IEASSSTRSTKVNNKVKKSRTNHVSQNKKLS------KPPESSLQSQKKLCFKNLALSLS 273

Query: 203 SNSALKQVFPRDVEEAAILLMELSCGFSHT 232
            N AL+QV P DVEEAAILLMELSCGF H+
Sbjct: 274 KNPALQQVLPHDVEEAAILLMELSCGFIHS 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550794|ref|XP_002516445.1| conserved hypothetical protein [Ricinus communis] gi|223544265|gb|EEF45786.1| conserved hypothetical protein [Ricinus communis]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 131/195 (67%), Gaps = 11/195 (5%)

Query: 38  MSSKMRLANKIINSSSVSTGTHDESVKVAEKLL-HEHDNIEVHYFTTNSSNSNNTVRICS 96
           M SKMR+  K++NS+      +D+ VK   K   H+      +   ++ SN NN +R+CS
Sbjct: 1   MPSKMRIMQKMMNSNCFEF--NDKPVKFTVKFQDHQQYQATNNEINSSCSNGNNNIRVCS 58

Query: 97  DCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQNN 156
           DCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR+AM AAA     T+   +  +K+K    
Sbjct: 59  DCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAIAMETSSTKA--AKVK---- 112

Query: 157 MEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVE 216
            EKK RT H +Q KK+ C  PD  PP +    + K+ FK+ ALSLS+NSAL++VFP DVE
Sbjct: 113 -EKKSRTGHASQCKKL-CKPPDHPPPPYNQGQKPKVSFKNLALSLSNNSALQRVFPEDVE 170

Query: 217 EAAILLMELSCGFSH 231
           EAA LLMELSCGF H
Sbjct: 171 EAATLLMELSCGFIH 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554076|ref|XP_003545375.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 135/227 (59%), Gaps = 17/227 (7%)

Query: 12  AIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLH 71
           A  RR +     S N+ +   S  + MSSKMRL  K++  S   + T D+++  + +   
Sbjct: 89  ACDRRNLPSEEESKNNDH--GSGNKWMSSKMRLMKKMMRPSI--SPTTDKAINSSPRF-Q 143

Query: 72  EHDNIEVHYFTTNSSNSNN---TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 128
            H  +E   ++  S  +NN   T R+CSDCNT+TTPLWR+GP+GPKSLCNACGIRQRKAR
Sbjct: 144 NHQGLESRRYSQRSPRNNNGSSTPRVCSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 203

Query: 129 KAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYK-KVQCNTPDPDPPHHEYR 187
           +AM  AA    T      +  K +L N  EKK R +H AQ+K K +  T           
Sbjct: 204 RAMAEAANGLVTPI----ACEKTRLHNK-EKKSRMNHFAQFKNKYKSTTTTTTTTVGSSE 258

Query: 188 SQRKL-CFKDFALSL-SSNSALKQVFPRD-VEEAAILLMELSCGFSH 231
             RKL  F +FA+SL S+NS  +Q+FPRD V EAA+LLM+LSCGF H
Sbjct: 259 GVRKLEYFNNFAISLRSNNSDFEQMFPRDEVAEAALLLMDLSCGFVH 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489347|gb|ABK96478.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 108/140 (77%), Gaps = 7/140 (5%)

Query: 93  RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIK 152
           R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRKAR+A  AAAE+G   + + SS S   
Sbjct: 171 RVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRA-MAAAENGAVISVEASS-STKS 228

Query: 153 LQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFP 212
             N+  KK RTSHV Q KK+  N P P+PP    +SQ+KLCFK+ ALSLS N AL+QV P
Sbjct: 229 KVNSKVKKLRTSHVVQGKKLS-NKP-PNPP---LQSQKKLCFKNLALSLSKNPALRQVLP 283

Query: 213 RDVEEAAILLMELSCGFSHT 232
            DVEEAAILLMELSCGF H+
Sbjct: 284 HDVEEAAILLMELSCGFIHS 303

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488977|gb|ABK96296.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 108/141 (76%), Gaps = 7/141 (4%)

Query: 92  VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKI 151
           +R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRKAR+A  AAAE+G   + + SS S  
Sbjct: 173 IRVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRA-MAAAENGAVISVEASS-STK 230

Query: 152 KLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVF 211
              N+  KK RTSHV Q KK+  N P P+PP    +SQ+KLCFK+ ALSLS N  L+QV 
Sbjct: 231 SKVNSKVKKLRTSHVVQGKKLS-NKP-PNPP---LQSQKKLCFKNLALSLSKNPVLRQVL 285

Query: 212 PRDVEEAAILLMELSCGFSHT 232
           P DVEEAAILLMELSCGF H+
Sbjct: 286 PHDVEEAAILLMELSCGFIHS 306

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429550|ref|XP_002279283.1| PREDICTED: putative GATA transcription factor 22 [Vitis vinifera] gi|296081660|emb|CBI20665.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 134/226 (59%), Gaps = 23/226 (10%)

Query: 8   TNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAE 67
           ++KL++ ++E G+        +        MSSKMRL  K++NS   +        K+ +
Sbjct: 103 SHKLSVFKKEEGDEGNKSTEKW--------MSSKMRLMRKMMNSDCTT-------AKIEQ 147

Query: 68  KLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 127
           K+        ++ F ++++ SN  +R+CSDCNTT TPLWRSGPRGPKSLCNACGIRQRKA
Sbjct: 148 KVEDHQQWDNINEFNSSNNTSNIPIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKA 207

Query: 128 RKAMQAAAESGTTTAKDNSSFSKIKLQ-NNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEY 186
           R+AM AAA +        +  S +K++  N EKK  TS+V Q KK+              
Sbjct: 208 RRAMAAAAAAAANGTAVGTEISPMKMKLPNKEKKMHTSNVGQQKKLCKPP-------CPP 260

Query: 187 RSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT 232
            +++KLCF+DF  S+  NS  ++VFPRD EEAAILLM LSC   ++
Sbjct: 261 PTEKKLCFEDFTSSICKNSGFRRVFPRDEEEAAILLMALSCDLVYS 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546095|ref|XP_002514107.1| hypothetical protein RCOM_1046780 [Ricinus communis] gi|223546563|gb|EEF48061.1| hypothetical protein RCOM_1046780 [Ricinus communis]

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 137/228 (60%), Gaps = 17/228 (7%)

Query: 10  KLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSS-SVSTGTHDESV-KVAE 67
           +L++ ++E    S  D      +SS + MSSKMRL  K++ +  +V+T  H  S+ K+ +
Sbjct: 95  ELSVCKKEDKSTSIEDQRD---NSSVKWMSSKMRLMRKMMTTDQTVNTTQHTSSMHKLED 151

Query: 68  KLLHEHDNIEVHYFTTN-SSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGI--RQ 124
           K       ++  Y + N S NSNNT+R+CSDCNTT TPLWRSGPRGPKSLCNACGI  R+
Sbjct: 152 KEKSRSLPLQDDYSSKNLSDNSNNTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 211

Query: 125 RKARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHH 184
            +   A   A+ +GT  A D ++    K+QN  EK+   SH+   K+ +           
Sbjct: 212 ARRALAAAQASANGTIFAPDTAAMKTNKVQNK-EKRTNNSHLPFKKRCKFTA-------Q 263

Query: 185 EYRSQRKLCFKDFALS-LSSNSALKQVFPRDVEEAAILLMELSCGFSH 231
              S++KLCF+D + + LS NSA +Q+FP+D +EAAILLM LS G  H
Sbjct: 264 SRGSRKKLCFEDLSSTILSKNSAFQQLFPQDEKEAAILLMALSYGLVH 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805325|emb|CAN63090.1| hypothetical protein VITISV_032017 [Vitis vinifera]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 135/229 (58%), Gaps = 29/229 (12%)

Query: 8   TNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAE 67
           ++KL++ ++E G+        +        MSSKMRL  K++NS   +        K+ +
Sbjct: 8   SHKLSVFKKEEGDEGNKSTEKW--------MSSKMRLMRKMMNSDCTT-------AKIEQ 52

Query: 68  KLLHEHDNIEVHYFTTNSSNSNNT-VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           K+  +H   +      +S+N++N  +R+CSDCNTT TPLWRSGPRGPKSLCNACGIRQRK
Sbjct: 53  KV-EDHQQWDNINEXNSSNNTSNIPIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 111

Query: 127 ---ARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPH 183
              A  A  AAA +GT    + S   K+KL N  EKK  TS+V Q KK+         P 
Sbjct: 112 ARRAMAAAAAAAANGTAVGTEISPM-KMKLPNK-EKKMHTSNVGQQKKLC-------KPP 162

Query: 184 HEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT 232
               +++KLCF+DF  S+  NS  ++VFPRD EEAAILLM LSC   ++
Sbjct: 163 CPPPTEKKLCFEDFTSSICKNSGFRRVFPRDEEEAAILLMALSCDLVYS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556282|ref|XP_003546455.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 13/201 (6%)

Query: 38  MSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNN------- 90
           M  KMR+  +++ S    +   +  +  ++K+ +E  N  +    T+ SN N+       
Sbjct: 112 MPLKMRMMRRLMVSDQTGSDDTEGMISNSQKIKYEEKNSPLSPLGTDDSNYNSSSNHSNI 171

Query: 91  TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSK 150
           TVR+CSDC+TT TPLWRSGP+GPKSLCNACGIRQRK R+A+ AAA S  T   + +  S+
Sbjct: 172 TVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVRRAIAAAATSNGTNPVE-AEKSQ 230

Query: 151 IKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQV 210
           +K  N +  K   S     ++++ N          YR +R   F+D  + LS N AL+QV
Sbjct: 231 VKKGNTLHSKGMKSKTEGAQQMKKNR----KLGARYR-KRFGAFEDLTVRLSKNFALQQV 285

Query: 211 FPRDVEEAAILLMELSCGFSH 231
           FP+D +EAAILLM LS G  H
Sbjct: 286 FPQDEKEAAILLMALSYGLLH 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.133	0.077	0.903	1.3e-23
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.603	0.397	0.415	1.3e-20
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.133	0.258	0.741	1.9e-14
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.129	0.152	0.733	6.5e-13
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.129	0.215	0.733	1.8e-12
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.241	0.375	0.482	2.8e-12
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.400	0.315	0.356	4.2e-11
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.568	0.694	0.326	4.5e-11
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.129	0.142	0.8	1.2e-10
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.129	0.144	0.766	3.2e-10

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 28/31 (90%), Positives = 30/31 (96%)

Query:    92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             +R+CSDCNTT TPLWRSGPRGPKSLCNACGI
Sbjct:   229 IRVCSDCNTTKTPLWRSGPRGPKSLCNACGI 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 64/154 (41%), Positives = 78/154 (50%)

Query:    92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI----XXXXXXXXXXXXXESGTTTAKDNSS 147
             +RICSDCNTT TPLWRSGPRGPKSLCNACGI                  SG +       
Sbjct:   198 IRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMATATATAVSGVSPPVMKKK 257

Query:   148 F-SKIKLQNNMEK--KPRTSHVAQYKKV-----QCNTPDPDPPHHE--YRSQRKLCFKDF 197
               +K K+ N + K   P    V   K++          D +   +     S   + F D 
Sbjct:   258 MQNKNKISNGVYKILSPLPLKVNTCKRMITLEETALAEDLETQSNSTMLSSSDNIYFDDL 317

Query:   198 ALSLSSNSALKQVFPRDVEEAAILLMELSCGFSH 231
             AL LS +SA +QVFP+D +EAAILLM LS G  H
Sbjct:   318 ALLLSKSSAYQQVFPQDEKEAAILLMALSHGMVH 351

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query:    92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             +R CS+C TT TP+WR GP GPKSLCNACGI
Sbjct:    25 IRCCSECKTTKTPMWRGGPTGPKSLCNACGI 55

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
 Identities = 22/30 (73%), Positives = 24/30 (80%)

Query:    93 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             + C DC T+ TPLWR GP GPKSLCNACGI
Sbjct:    37 KTCVDCGTSRTPLWRGGPAGPKSLCNACGI 66

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 22/30 (73%), Positives = 25/30 (83%)

Query:    93 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             + C+DC T+ TPLWR GP GPKSLCNACGI
Sbjct:    36 KTCADCGTSKTPLWRGGPVGPKSLCNACGI 65

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
 Identities = 27/56 (48%), Positives = 30/56 (53%)

Query:    67 EKLLHEHDNIEVHYFXXXXXXXXXXVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             E  L   D IE H             + C+ C T+ TPLWR GP GPKSLCNACGI
Sbjct:    15 ESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGI 70

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 36/101 (35%), Positives = 50/101 (49%)

Query:    93 RICSDCNTTTTPLWRSGPRGPKSLCNACGIXXXXXXXXXXXXXESGTTTAKDNSSFSKIK 152
             R C++C+TT+TPLWR+GPRGPKSLCNACGI             E  TT A  N+      
Sbjct:   152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKE--------ERRTTAATGNTVVGAAP 203

Query:   153 LQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLC 193
             +Q +      + +   +     N  +  P  H + +QR  C
Sbjct:   204 VQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHSTQRVPC 244

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 48/147 (32%), Positives = 65/147 (44%)

Query:    93 RICSDCNTTTTPLWRSGPRGPKSLCNACGIXXXXXXXXXXXX-XESGTTTAKDNSSFSKI 151
             R C DC T  TPLWR GP GPKSLCNACGI              E      K N + + +
Sbjct:    42 RTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCN-NDL 100

Query:   152 KLQNNMEKKPRTSHVAQYK-------KVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSN 204
              L +   KK + + V   K       K+ CN           +   K     F + +   
Sbjct:   101 NLDHRNAKKYKINIVDDGKIDIDDDPKI-CNNKRSSSSSSN-KGVSKFLDLGFKVPVMKR 158

Query:   205 SAL--KQVFPR--DVEEAAILLMELSC 227
             SA+  K+++ +  + E AA+LLM LSC
Sbjct:   159 SAVEKKRLWRKLGEEERAAVLLMALSC 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query:    93 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             R C++C+TT+TPLWR+GPRGPKSLCNACGI
Sbjct:    75 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 104

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 23/30 (76%), Positives = 28/30 (93%)

Query:    93 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 122
             R C+ C+TT+TPLWR+GP+GPKSLCNACGI
Sbjct:    92 RRCASCDTTSTPLWRNGPKGPKSLCNACGI 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	3e-16
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-15
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-12

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 90  NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAA 134
            + R CS+C TT TPLWR GP G K+LCNACG+  +K     +  
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPL 45

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 67.3 bits (165), Expect = 2e-15
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 95  CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 129
           CS+C TT TPLWR GP G ++LCNACG+  RK   
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGL 35

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 94  ICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
            CS+C TTTTPLWR GP G  +LCNACG+  +K
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKK 33

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.49
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.47
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.46
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.66
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.76
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	84.07

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.49  E-value=5.9e-15  Score=96.80  Aligned_cols=35  Identities=57%  Similarity=1.230  Sum_probs=28.2

Q ss_pred             ccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843           95 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  129 (232)
Q Consensus        95 C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~  129 (232)
                      |++|++++||+||+||.|+.+|||+||++|++.++
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988899999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.47  E-value=1.9e-14  Score=102.23  Aligned_cols=37  Identities=57%  Similarity=1.149  Sum_probs=34.1

Q ss_pred             cccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843           94 ICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  130 (232)
Q Consensus        94 ~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~  130 (232)
                      +|+||++++||+||+||+|..+|||||||+|++....
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~   37 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVM   37 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCC
Confidence            5999999999999999988899999999999988643

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.46  E-value=2.7e-14  Score=100.48  Aligned_cols=40  Identities=55%  Similarity=1.098  Sum_probs=36.5

Q ss_pred             CCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843           91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  130 (232)
Q Consensus        91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~  130 (232)
                      ..+.|++|++++||+||+||.|+.+|||||||+|++....
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            4678999999999999999999889999999999987654

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.66  E-value=1.1e-08  Score=84.44  Aligned_cols=37  Identities=68%  Similarity=1.399  Sum_probs=35.2

Q ss_pred             CccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 026843           92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR  128 (232)
Q Consensus        92 ~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r  128 (232)
                      ...|.+|+++.||+||+++.|+..+|||||++|++..
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG  235 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcC
Confidence            5899999999999999999999999999999999984

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.76  E-value=8.1e-06  Score=80.15  Aligned_cols=42  Identities=40%  Similarity=0.872  Sum_probs=34.6

Q ss_pred             CCCccccCCCCCCCCcccCCCCC----CcccchHHHHHHHHhhhHH
Q 026843           90 NTVRICSDCNTTTTPLWRSGPRG----PKSLCNACGIRQRKARKAM  131 (232)
Q Consensus        90 ~~~~~C~~Cgtt~TP~WRrGP~G----~~~LCNACGL~~~k~r~~~  131 (232)
                      ....+|.+|.++.||+|||++.+    +-+|||||||+|+-.....
T Consensus       156 ~~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r  201 (498)
T COG5641         156 NQPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPR  201 (498)
T ss_pred             cccchhccccccCCccccccccccccCCccccccccccccccCCcC
Confidence            34559999999999999999993    3789999999998654443

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=84.07  E-value=0.82  Score=45.99  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=32.1

Q ss_pred             CCCccccCCCCCCCCcc--cCCCCCCcccchHHHHHHHHhh
Q 026843           90 NTVRICSDCNTTTTPLW--RSGPRGPKSLCNACGIRQRKAR  128 (232)
Q Consensus        90 ~~~~~C~~Cgtt~TP~W--RrGP~G~~~LCNACGL~~~k~r  128 (232)
                      ...+.|-+|+|+++-+|  ..+|+-...||-.|=++|+|..
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKyg  424 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYG  424 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHHhc
Confidence            34789999999999999  3455566679999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		4e-04
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		8e-04

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 95  CSDCNTTTTPLWRSGPRGPKSLCNACGI 122
           C++C T TTPLWR  P G + LCNACG+
Sbjct: 4   CTNCFTQTTPLWRRNPEG-QPLCNACGL 30

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 95  CSDCNTTTTPLWRSGPRGPKSLCNACGI 122
           C++C T TTPLWR  P G + LCNACG+
Sbjct: 12  CTNCFTQTTPLWRRNPEG-QPLCNACGL 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	4e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-12
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-10
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 86  SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           S+ N     CS+C+ T T  WR+        CNAC I QRK
Sbjct: 2   SHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRK 42

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 93  RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           R C +C  T TPLWR    G   LCNACG+  + 
Sbjct: 5   RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 37

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 93  RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
             C++C T TTPLWR  P G + LCNACG+  + 
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 34

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 86  SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           S +      C++C TTTT LWR    G   +CNACG+  + 
Sbjct: 1   SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKL 40

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 86  SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           +   N    C++C T TTPLWR  P G + LCNACG+  + 
Sbjct: 3   NGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 42

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)

Query: 121 GIRQRKARKAMQAAAESGTTTAKDNSSF--SKIKLQNNMEKKPRTSHVAQYKKVQCNTPD 178
                K  + +Q   E      + N  F  S IK +          ++ Q  ++  N   
Sbjct: 69  WTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQ 124

Query: 179 PDPPHHEYRSQRKLCFKDFALSLSSNSAL---------KQVFPRDV 215
               ++  R Q  L  +   L L     +         K     DV
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 44/263 (16%), Positives = 72/263 (27%), Gaps = 100/263 (38%)

Query: 38  M--SSKMRLANKIINSSSV-----------STG---THDESVKVAEKLLHEHDNIEVHYF 81
           +  S K  +A  +  S  V           +     + +  +++ +KLL++ D      +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNW 213

Query: 82  TTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSL------CNA---------CGI---- 122
           T+ S +S+N              L +S       L       NA         C I    
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 123 RQRKARKAMQAAAES---------GTTTAKDNSSFSKIKLQNNMEKKPR----------- 162
           R ++    + AA  +           T  +  S   K  L    +  PR           
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLS 331

Query: 163 ---------TSHVAQYKKVQC-----------NTPDPDPPHHEYRSQRKLCFKDFALSLS 202
                     +    +K V C           N  +P     EYR      F   +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYRK----MFDRLS---- 379

Query: 203 SNSALKQVFPRDVEEAAILLMEL 225
                  VFP       ILL  +
Sbjct: 380 -------VFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.59
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.59
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.58
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.54
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.51
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.3
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.21

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.59  E-value=8.2e-16  Score=111.85  Aligned_cols=40  Identities=38%  Similarity=0.816  Sum_probs=36.3

Q ss_pred             CCCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843           89 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  129 (232)
Q Consensus        89 ~~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~  129 (232)
                      ......|++|++++||+||+||+|+ +|||||||+|++...
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI   43 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence            3567889999999999999999997 999999999998764

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.59  E-value=3.9e-16  Score=105.83  Aligned_cols=36  Identities=47%  Similarity=1.024  Sum_probs=33.2

Q ss_pred             ccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843           93 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  129 (232)
Q Consensus        93 ~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~  129 (232)
                      +.|++|++++||+||+||+|+ +|||||||+|++...
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   37 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence            579999999999999999996 999999999998754

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.58  E-value=7.1e-16  Score=105.95  Aligned_cols=38  Identities=42%  Similarity=0.957  Sum_probs=34.4

Q ss_pred             CCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843           91 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  129 (232)
Q Consensus        91 ~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~  129 (232)
                      ..+.|++|++++||+||+||+|+ +|||||||||++...
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   40 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ   40 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence            56789999999999999999996 999999999987643

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.54  E-value=1.8e-15  Score=110.87  Aligned_cols=41  Identities=44%  Similarity=0.913  Sum_probs=36.7

Q ss_pred             CCCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843           89 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  130 (232)
Q Consensus        89 ~~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~  130 (232)
                      .+..+.|++|++++||+||+||+|+ +|||||||+|++....
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~   46 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   46 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC
Confidence            4678999999999999999999996 9999999999986543

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.51  E-value=7.5e-15  Score=108.99  Aligned_cols=42  Identities=40%  Similarity=0.586  Sum_probs=33.0

Q ss_pred             CCCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843           89 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  130 (232)
Q Consensus        89 ~~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~  130 (232)
                      ......|+||+|++||+||+||.+..+|||||||+|++....
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~   46 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT   46 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC
Confidence            456789999999999999995444448999999999987543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.30  E-value=1.1e-12  Score=104.46  Aligned_cols=40  Identities=38%  Similarity=0.821  Sum_probs=36.5

Q ss_pred             CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhhH
Q 026843           90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  130 (232)
Q Consensus        90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~~  130 (232)
                      .....|++|++++||+||+||+| .+|||||||||++....
T Consensus        57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~   96 (115)
T 4hc9_A           57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN   96 (115)
T ss_dssp             CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred             cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence            45689999999999999999999 89999999999988654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.21  E-value=4.1e-12  Score=101.25  Aligned_cols=37  Identities=43%  Similarity=0.971  Sum_probs=31.8

Q ss_pred             CCCccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843           90 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA  127 (232)
Q Consensus        90 ~~~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~  127 (232)
                      ...+.|+||++++||+||+||+| .+|||||||+|+..
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~   39 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN   39 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence            45789999999999999999999 79999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	4e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	1e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	1e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (138), Expect = 4e-12
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 93  RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           R C +C  T TPLWR    G   LCNACG+  + 
Sbjct: 3   RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 35

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 49.8 bits (119), Expect = 1e-09
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 95  CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
           C++C T TTPLWR  P G + LCNACG+  + 
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 33

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 93  RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 126
            +CS+C T+TT LWR  P G   +CNACG+  + 
Sbjct: 5   TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKL 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.65
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.62
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.54

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.1e-17  Score=108.79  Aligned_cols=35  Identities=46%  Similarity=1.051  Sum_probs=32.5

Q ss_pred             CccccCCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 026843           92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA  127 (232)
Q Consensus        92 ~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~  127 (232)
                      .+.|++|++++||+||+||+| ++|||||||+|+..
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~   36 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMN   36 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHS
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHh
Confidence            578999999999999999999 68999999999864

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.62  E-value=6.5e-17  Score=107.95  Aligned_cols=34  Identities=50%  Similarity=1.119  Sum_probs=31.6

Q ss_pred             cccCCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 026843           94 ICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR  128 (232)
Q Consensus        94 ~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r  128 (232)
                      .|+||++++||+||+||+| ++|||||||||++..
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g   35 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHG   35 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcC
Confidence            5999999999999999999 799999999998654

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.54  E-value=7.7e-16  Score=111.24  Aligned_cols=37  Identities=43%  Similarity=0.988  Sum_probs=33.6

Q ss_pred             CccccCCCCCCCCcccCCCCCCcccchHHHHHHHHhhh
Q 026843           92 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  129 (232)
Q Consensus        92 ~~~C~~Cgtt~TP~WRrGP~G~~~LCNACGL~~~k~r~  129 (232)
                      ...|+||++++||+||+||.| .+|||||||||++...
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            457999999999999999999 7999999999998653