Citrus Sinensis ID: 026884

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE
Secondary Structure (PSIPRED)
cccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEEccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHccHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHccccccccc
Coil and Loop (DISEMBL)
MKQQALQKkqgadrssksgrsaqtkqksstdvkveKEDIKSYVAkgkkrksdsgtekdnvSVEKLVKIQIPSTLKKQLVDDWEFVnqqdklvklprlpnvddILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDlvvdnvspstiyGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFflsaydgsrvsegkgkgkde
Flexible Loop (DISEMBL)
mkqqalqkkqgadrssksgrsaqtkqksstdvkvekediksyvakgkkrksdsgtekdnvsveklvkiqipstlkkqlvdDWEFVNQqdklvklprlpnvddiLTKYLqyrskkdgmmtDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFflsaydgsrvsegkgkgkde
Low Complexity Region (SEG)
MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE
Disordered region (IsUnstruct)
**************************************************************EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAY***************
Disordered Region (DISOPRED)
*******************************************************************IQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKK***MTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDG*************
Disordered Region (DISEMBL)
***********************************KEDIKSY*****************VSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSR***********
Disordered Region (DISPRO)
************************************************************SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDG*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q54RM0	379	NuA4 complex subunit EAF3	yes	no	0.640	0.390	0.451	2e-31
Q5NVP9	323	Mortality factor 4-like p	yes	no	0.917	0.656	0.337	3e-28
Q6C9M9	387	Chromatin modification-re	yes	no	0.714	0.426	0.396	4e-28
Q9UBU8	362	Mortality factor 4-like p	yes	no	0.922	0.588	0.351	9e-28
P60762	362	Mortality factor 4-like p	yes	no	0.922	0.588	0.351	9e-28
Q6AYU1	323	Mortality factor 4-like p	no	no	0.917	0.656	0.333	1e-27
P0CO86	305	Chromatin modification-re	yes	no	0.658	0.498	0.452	3e-27
P0CO87	305	Chromatin modification-re	N/A	no	0.658	0.498	0.452	3e-27
Q5BBV4	327	Chromatin modification-re	yes	no	0.761	0.538	0.378	4e-26
Q9R0Q4	288	Mortality factor 4-like p	no	no	0.727	0.583	0.371	1e-25

>sp|Q54RM0|EAF3_DICDI NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum GN=DDB_G0283075 PE=3 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 7/155 (4%)

Query: 64  KLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIG 123
           K + I+IP +LK +LVDDW  +N +  ++ LP+ PNV DIL K ++   K     +    
Sbjct: 216 KFIDIEIPLSLKNKLVDDWNSINNEKSILSLPKSPNVKDILNKIIEENDK-----SSECK 270

Query: 124 EILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV--SPSTIYGAEHLLRLFVKLPELLA 181
           E++ GI+ YF+KAL  +LLYK ER QY  ++  N   S S IYGAEHLLRLFVKLP+LL 
Sbjct: 271 EVINGIKQYFNKALGTLLLYKFERPQYDSILKTNPKKSMSDIYGAEHLLRLFVKLPQLLV 330

Query: 182 YVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAY 216
             N+E++T+ +L+      L++++KN ST FL  Y
Sbjct: 331 ISNLEEKTITQLKDAFEIVLEYLEKNSSTLFLKEY 365

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Also component of a complex which acts to repress transcription by deacetylation of nucleosomal histones.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5NVP9|MO4L1_PONAB Mortality factor 4-like protein 1 OS=Pongo abelii GN=MORF4L1 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 28/240 (11%)

Query: 2   KQQALQKK------QGADRSSKSGRSAQTKQKSSTDVKVEKEDIKS-------------Y 42
           KQ+ LQK       +G  R +  G+     Q+ + DVK +K   K+              
Sbjct: 72  KQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVDVKTKKNKQKTPGNGDGGSTSETPQ 131

Query: 43  VAKGKKRKSDSGTEKDNVSVEKL-VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVD 101
             + K+ + D   E +   + ++ VK++IP  LK  LVDDW+ + +Q +L  LP   NVD
Sbjct: 132 PPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVD 191

Query: 102 DILTKYLQYRSKKDGMMTD----SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDN 157
            IL  Y  Y+  +    TD    ++ E++ GI+ YF+  L   LLYK ER QY +++ D+
Sbjct: 192 SILEDYANYKKSRGN--TDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADH 249

Query: 158 V-SP-STIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSA 215
             +P S +YGA HLLRLFV++  +LAY  +++++L  L   + DFLK++ KN +T F ++
Sbjct: 250 PDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSAS 309

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Pongo abelii (taxid: 9601)

>sp|Q6C9M9|EAF3_YARLI Chromatin modification-related protein EAF3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=EAF3 PE=3 SV=1

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 106/174 (60%), Gaps = 9/174 (5%)

Query: 64  KLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKY---LQYRSKKDGMMTD 120
           K + + +P  LK QLVDDWEFV +  +LV LPR   V DIL ++    + + +      D
Sbjct: 213 KEIALVVPDKLKAQLVDDWEFVTKDHQLVGLPRKVTVVDILKEFKKEAEAKYRPGSADAD 272

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLV----VDNVSPSTIYGAEHLLRLFVKL 176
            + E++ GI+ YFD++L  +LLY+ ER+QY  +       N + S +YGAEHLLRLFV L
Sbjct: 273 ILNEVVSGIKLYFDRSLGSILLYRFEREQYLQITQSPDHSNKTMSEVYGAEHLLRLFVSL 332

Query: 177 PELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAY-DGSRVSEGKGKG 228
           P L+A  N++ +++  L++ + DF++F+  +Q T+FL  AY + S   E   KG
Sbjct: 333 PGLIAMTNMDAQSVAVLKEHLEDFVRFLSTHQKTYFLKEAYTNASPAYEALSKG 386

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9UBU8|MO4L1_HUMAN Mortality factor 4-like protein 1 OS=Homo sapiens GN=MORF4L1 PE=1 SV=2

 Score =  123 bits (309), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 29/242 (11%)

Query: 2   KQQALQKK------QGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSY------------- 42
           KQ+ LQK       +G  R +  G+     Q+ + +VK +K   K+              
Sbjct: 111 KQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQ 170

Query: 43  VAKGKKRKSDSGTEKDNVSVEKL-VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVD 101
             + K+ + D   E +   + ++ VK++IP  LK  LVDDW+ + +Q +L  LP   NVD
Sbjct: 171 PPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVD 230

Query: 102 DILTKYLQYRSKKDGMMTD----SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDN 157
            IL  Y  Y  KK    TD    ++ E++ GI+ YF+  L   LLYK ER QY +++ D+
Sbjct: 231 SILEDYANY--KKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADH 288

Query: 158 V-SP-STIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSA 215
             +P S +YGA HLLRLFV++  +LAY  +++++L  L   + DFLK++ KN +T F SA
Sbjct: 289 PDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SA 347

Query: 216 YD 217
            D
Sbjct: 348 SD 349

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Homo sapiens (taxid: 9606)

>sp|P60762|MO4L1_MOUSE Mortality factor 4-like protein 1 OS=Mus musculus GN=Morf4l1 PE=2 SV=2

 Score =  123 bits (309), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 29/242 (11%)

Query: 2   KQQALQKK------QGADRSSKSGRSAQTKQKSSTDVKVEKEDIKS-------------Y 42
           KQ+ LQK       +G  R +  G+     Q+ + +VK +K   K+              
Sbjct: 111 KQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQ 170

Query: 43  VAKGKKRKSDSGTEKDNVSVEKL-VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVD 101
             + K+ + D   E +   + ++ VK++IP  LK  LVDDW+ + +Q +L  LP   NVD
Sbjct: 171 PPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVD 230

Query: 102 DILTKYLQYRSKKDGMMTD----SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDN 157
            IL  Y  Y  KK    TD    ++ E++ GI+ YF+  L   LLYK ER QY +++ D+
Sbjct: 231 SILEDYANY--KKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADH 288

Query: 158 V-SP-STIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSA 215
             +P S +YGA HLLRLFV++  +LAY  +++++L  L   + DFLK++ KN +T F SA
Sbjct: 289 PDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SA 347

Query: 216 YD 217
            D
Sbjct: 348 SD 349

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Mus musculus (taxid: 10090)

>sp|Q6AYU1|MO4L1_RAT Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 28/240 (11%)

Query: 2   KQQALQKK------QGADRSSKSGRSAQTKQKSSTDVKVEKEDIKS-------------Y 42
           KQ+ LQK       +G  R +  G+     Q+ + +VK +K   K+              
Sbjct: 72  KQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQ 131

Query: 43  VAKGKKRKSDSGTEKDNVSVEKL-VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVD 101
             + K+ + D   E +   + ++ VK++IP  LK  LVDDW+ + +Q +L  LP   NVD
Sbjct: 132 PPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVD 191

Query: 102 DILTKYLQYRSKKDGMMTD----SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDN 157
            IL  Y  Y+  +    TD    ++ E++ GI+ YF+  L   LLYK ER QY +++ D+
Sbjct: 192 SILEDYANYKKSRGN--TDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADH 249

Query: 158 V-SP-STIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSA 215
             +P S +YGA HLLRLFV++  +LAY  +++++L  L   + DFLK++ KN +T F ++
Sbjct: 250 PDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSAS 309

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones.Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Rattus norvegicus (taxid: 10116)

>sp|P0CO86|EAF3_CRYNJ Chromatin modification-related protein EAF3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=EAF3 PE=3 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 7/159 (4%)

Query: 66  VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRS-----KKDGMMTD 120
           VKI IP  LK  LVDDWE V + ++LV LPR PNV ++L +Y QY S     ++    T 
Sbjct: 135 VKIVIPDVLKLVLVDDWENVTKNNQLVALPRKPNVRELLEEYRQYASASKKQERSDRATA 194

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSP--STIYGAEHLLRLFVKLPE 178
            + EI+ GI  YFDKAL   LLY+ ER QY +    N     S IYGAEHLLRLFV    
Sbjct: 195 LLSEIISGITLYFDKALGNNLLYRFERAQYVEQKRQNPEKPMSEIYGAEHLLRLFVNFGP 254

Query: 179 LLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
            +AY NI+ E+L  L+  + D +++M K Q   F+  Y+
Sbjct: 255 FIAYTNIDTESLNILRDYINDIMQWMIKEQKRLFMKEYE 293

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CO87|EAF3_CRYNB Chromatin modification-related protein EAF3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=EAF3 PE=3 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 7/159 (4%)

Query: 66  VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRS-----KKDGMMTD 120
           VKI IP  LK  LVDDWE V + ++LV LPR PNV ++L +Y QY S     ++    T 
Sbjct: 135 VKIVIPDVLKLVLVDDWENVTKNNQLVALPRKPNVRELLEEYRQYASASKKQERSDRATA 194

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSP--STIYGAEHLLRLFVKLPE 178
            + EI+ GI  YFDKAL   LLY+ ER QY +    N     S IYGAEHLLRLFV    
Sbjct: 195 LLSEIISGITLYFDKALGNNLLYRFERAQYVEQKRQNPEKPMSEIYGAEHLLRLFVNFGP 254

Query: 179 LLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
            +AY NI+ E+L  L+  + D +++M K Q   F+  Y+
Sbjct: 255 FIAYTNIDTESLNILRDYINDIMQWMIKEQKRLFMKEYE 293

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q5BBV4|EAF3_EMENI Chromatin modification-related protein eaf3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=eaf3 PE=3 SV=1

 Score =  118 bits (295), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 107/185 (57%), Gaps = 9/185 (4%)

Query: 41  SYVAKGKKRKSDSGTEKD-NVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPN 99
           S   +G KR  D+  EK+ +      V+I +P  LK  LVDDWE V +  ++V LP   +
Sbjct: 116 SVPGRGTKRARDNDIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAKSS 175

Query: 100 VDDILTKYL-QYRSKKDGMM-TDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLV--- 154
           V+ IL  YL + R K+ G    D + E++ GIR YFDK+L  +LLY+ ER+QY  L    
Sbjct: 176 VNQILDDYLKEERPKRTGSSEVDVLEEVVMGIRDYFDKSLDKILLYRFEREQYRVLRKRW 235

Query: 155 ---VDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTF 211
                +  P  +YGAEHL RLF  +PEL+A  N++ ++  RL++++  F  ++ KN + +
Sbjct: 236 ESETADKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTIWLSKNSNHY 295

Query: 212 FLSAY 216
           F + Y
Sbjct: 296 FATRY 300

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q9R0Q4|MO4L2_MOUSE Mortality factor 4-like protein 2 OS=Mus musculus GN=Morf4l2 PE=1 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 109/175 (62%), Gaps = 7/175 (4%)

Query: 47  KKRKSDSGTEKDNVSVEKL-VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILT 105
           K+ ++D   E +     ++ VK++IP  LK  LV+DW+ V +Q +L +LP   NVD IL 
Sbjct: 101 KRARADPTVESEEAFKSRMEVKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILE 160

Query: 106 KYLQYRSKKDGMMTD---SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP- 160
           +Y   + K  G + +   ++ E++ GI+ YF+  L   LLYK ER QY ++++ +  +P 
Sbjct: 161 EYANCK-KSQGNVDNKEYAVNEVVGGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPM 219

Query: 161 STIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSA 215
           S IYGA HLLRLFV++  +LAY  +++++L  L   + DFLK++ KN ++ F ++
Sbjct: 220 SQIYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFTAS 274

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histone H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the MSIN3A complex which acts to repress transcription by deacetylation of nucleosomal histones.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
255567903	318	chromatin binding protein, putative [Ric	1.0	0.726	0.865	1e-111
224094262	332	predicted protein [Populus trichocarpa]	0.995	0.692	0.839	1e-106
356511911	319	PREDICTED: nuA4 complex subunit EAF3 hom	1.0	0.724	0.792	1e-102
356563568	319	PREDICTED: nuA4 complex subunit EAF3 hom	1.0	0.724	0.774	1e-99
225438843	321	PREDICTED: mortality factor 4-like prote	0.991	0.713	0.760	2e-97
449448286	316	PREDICTED: mortality factor 4-like prote	0.991	0.724	0.757	4e-96
297798150	320	MRG family protein [Arabidopsis lyrata s	1.0	0.721	0.711	6e-94
18420009	320	mortality factor 4-like protein 1 [Arabi	1.0	0.721	0.693	5e-92
4006854	327	putative protein [Arabidopsis thaliana]	1.0	0.706	0.693	8e-92
218185895	392	hypothetical protein OsI_36418 [Oryza sa	0.935	0.551	0.684	4e-76

>gi|255567903|ref|XP_002524929.1| chromatin binding protein, putative [Ricinus communis] gi|223535764|gb|EEF37426.1| chromatin binding protein, putative [Ricinus communis]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 215/231 (93%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQQAL+KKQG D+SSK GRSAQTK K+STD KV+KED KS VAKGKKRKSDSG EKDN+
Sbjct: 88  VKQQALEKKQGVDKSSKLGRSAQTKPKTSTDAKVDKEDAKSNVAKGKKRKSDSGIEKDNL 147

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           S EKLVKIQIPSTLKKQLVDDWEFV QQDKLV+LPR PNVDDILTKYL+YRSKKDGMMTD
Sbjct: 148 SAEKLVKIQIPSTLKKQLVDDWEFVIQQDKLVRLPRSPNVDDILTKYLEYRSKKDGMMTD 207

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           SIGEILKGIRCYFDKALPVMLLYKKER QY D V ++ SPSTIYGAEHLLRLFVKLPELL
Sbjct: 208 SIGEILKGIRCYFDKALPVMLLYKKERHQYDDAVENDASPSTIYGAEHLLRLFVKLPELL 267

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE 231
           AYVNIE+ETL RLQQK++DFLKF+QKNQSTFFLSAYDGS+VSEGKGKGKDE
Sbjct: 268 AYVNIEEETLARLQQKLLDFLKFLQKNQSTFFLSAYDGSKVSEGKGKGKDE 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094262|ref|XP_002310115.1| predicted protein [Populus trichocarpa] gi|222853018|gb|EEE90565.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/230 (83%), Positives = 210/230 (91%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQQAL+KKQG D+S K GRS+QTK K+STD K++KED KS VAKGKKRKSDSG EKDN+
Sbjct: 103 LKQQALEKKQGVDKSLKPGRSSQTKPKNSTDSKMDKEDPKSNVAKGKKRKSDSGMEKDNL 162

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
            VEKLVKIQIPSTLKKQLVDDWEFV QQDK VKLPR PNVDDILTKYL+Y SKKDGM+TD
Sbjct: 163 PVEKLVKIQIPSTLKKQLVDDWEFVTQQDKFVKLPRSPNVDDILTKYLEYMSKKDGMITD 222

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           SIGEILKGIRCYFDKALPVMLLYKKERQQYHD V  +VSPSTIYGAEHLLRLFVKLPELL
Sbjct: 223 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDTVKIDVSPSTIYGAEHLLRLFVKLPELL 282

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKD 230
           AYVNIE++T  RLQQK++DFLKF+ KNQSTFFLSAYDGS+VSEGK KGKD
Sbjct: 283 AYVNIEEDTSTRLQQKLLDFLKFLHKNQSTFFLSAYDGSKVSEGKVKGKD 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511911|ref|XP_003524665.1| PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/231 (79%), Positives = 210/231 (90%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           MKQQAL KKQ  D++ KSGRS+Q K KSSTD K++KED+K+ V+KGKKRK D+G EK + 
Sbjct: 89  MKQQALDKKQNVDKNVKSGRSSQGKAKSSTDAKMDKEDVKNNVSKGKKRKHDAGVEKGSG 148

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           +VEKLVKIQIP+TLKKQLVDDW+ V QQDKLVKLPR P VD+ILTKYL+Y+SKKDG+  D
Sbjct: 149 TVEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTVDEILTKYLEYKSKKDGIAPD 208

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           SIGEILKGIRCYFDKALP+MLLYKKER+QY+D +VDNVSPSTIYGAEHLLRLFVKLPELL
Sbjct: 209 SIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSPSTIYGAEHLLRLFVKLPELL 268

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE 231
           AYV IE+ETL RLQQK++DFLKF+QKNQSTFFLSAYDG++VSEGKGKGKDE
Sbjct: 269 AYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAYDGTKVSEGKGKGKDE 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563568|ref|XP_003550033.1| PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/231 (77%), Positives = 207/231 (89%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQQAL KKQ  D++ KSGRS+Q K K STD K++KED+K+ V+KGKKRK D+G EK + 
Sbjct: 89  LKQQALDKKQNVDKNVKSGRSSQGKAKISTDAKMDKEDVKNNVSKGKKRKHDAGVEKGSG 148

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           +VEKLVKIQIP+TLKKQLVDDW+ V QQDKLVKLPR P VD+I+TKYL+Y+SKKDG+  D
Sbjct: 149 TVEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTVDEIMTKYLEYKSKKDGVAPD 208

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           SIGEILKGIRCYFDKALP+MLLYKKER+QY+D +VDNVSPSTIYGAEHLLRLFVKLPELL
Sbjct: 209 SIGEILKGIRCYFDKALPMMLLYKKERKQYNDSIVDNVSPSTIYGAEHLLRLFVKLPELL 268

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE 231
           AYV IE+ETL RLQQK++DFLKF+QKNQSTFFLSAYDG +V EGKGKGKDE
Sbjct: 269 AYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAYDGPKVPEGKGKGKDE 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438843|ref|XP_002283618.1| PREDICTED: mortality factor 4-like protein 1 [Vitis vinifera] gi|296087392|emb|CBI33766.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/230 (76%), Positives = 202/230 (87%), Gaps = 1/230 (0%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQQAL KKQGA+++ KSGRSAQ K KSSTD KVEKED+KSYVA+GK+RKSDSG EKDN 
Sbjct: 91  LKQQALDKKQGAEKNPKSGRSAQAKPKSSTDAKVEKEDLKSYVARGKRRKSDSGIEKDNA 150

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           S EKLVKI IP+TLKKQLVDDW+FV QQDKLVKLPR+PNVD IL KYL+YR KKDG MTD
Sbjct: 151 STEKLVKIPIPATLKKQLVDDWDFVTQQDKLVKLPRIPNVDAILIKYLEYRIKKDGTMTD 210

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD-NVSPSTIYGAEHLLRLFVKLPEL 179
            + EIL G+R YFD+ALP+MLLYKKERQQ+ + +   ++SPST+YGAEHLLRLFVKLPEL
Sbjct: 211 YVAEILNGLRSYFDRALPMMLLYKKERQQFQEAIYHPDLSPSTVYGAEHLLRLFVKLPEL 270

Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGK 229
           LA VNIE+ETLI +QQK IDFLKF+QKNQSTFFLSAY+GS+ SEG G+GK
Sbjct: 271 LACVNIEEETLIGMQQKFIDFLKFLQKNQSTFFLSAYEGSKSSEGSGRGK 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448286|ref|XP_004141897.1| PREDICTED: mortality factor 4-like protein 1-like [Cucumis sativus] gi|449523073|ref|XP_004168549.1| PREDICTED: mortality factor 4-like protein 1-like [Cucumis sativus]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 175/231 (75%), Positives = 204/231 (88%), Gaps = 2/231 (0%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQ+AL+K    ++SSKSGRSAQ K K+  D +VEKED K+   KGKKRK+DSGT KDN 
Sbjct: 88  LKQRALEKGY-VEKSSKSGRSAQAKPKNLNDARVEKEDHKNNAPKGKKRKNDSGT-KDNQ 145

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           SVEK++KIQIPSTL+KQLVDDWEFV QQDKLVKLPR P VDDILTKYL+YRSK+DG +TD
Sbjct: 146 SVEKVIKIQIPSTLRKQLVDDWEFVTQQDKLVKLPRSPTVDDILTKYLEYRSKRDGTITD 205

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           S+GE+LKGIRCYFDKALPV+LLY KER QYH LVVD+VSPST+YGAEHLLRLFVKLPELL
Sbjct: 206 SLGEVLKGIRCYFDKALPVLLLYNKERDQYHKLVVDDVSPSTVYGAEHLLRLFVKLPELL 265

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDGSRVSEGKGKGKDE 231
           AYVNIEDET IRL QK++DFLKF+QKNQSTFF+SAY+G + +EGKGK K++
Sbjct: 266 AYVNIEDETQIRLHQKLLDFLKFLQKNQSTFFVSAYEGCKGTEGKGKSKND 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798150|ref|XP_002866959.1| MRG family protein [Arabidopsis lyrata subsp. lyrata] gi|297312795|gb|EFH43218.1| MRG family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 165/232 (71%), Positives = 203/232 (87%), Gaps = 1/232 (0%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQ+AL KKQG ++ +KSGRSAQTK +SS D K +K+D K+  AKGKKRK DSG EKDNV
Sbjct: 89  VKQKALDKKQGVEKGTKSGRSAQTKTRSSADTKADKDDTKTNAAKGKKRKHDSGNEKDNV 148

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           S EKL+KIQIP+TLKKQL+DDWE++ Q+DK+VKLPR PNVD+IL KYL++++KKDGM+TD
Sbjct: 149 SAEKLMKIQIPATLKKQLIDDWEYIAQKDKVVKLPRSPNVDEILAKYLEFKTKKDGMITD 208

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           S+ EILKGIR YFDKALPVMLLYKKER+QY + +VD+ SPST+YGAEHLLRLFVKLPELL
Sbjct: 209 SVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSPSTVYGAEHLLRLFVKLPELL 268

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGKGKDE 231
           +YVN+E+ET  R+QQ + DFLKF+QKNQ+TF L SAYD  +VS+GKGKGKD+
Sbjct: 269 SYVNMEEETWSRMQQTLSDFLKFIQKNQNTFLLPSAYDSDKVSDGKGKGKDD 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420009|ref|NP_568021.1| mortality factor 4-like protein 1 [Arabidopsis thaliana] gi|14335028|gb|AAK59778.1| AT4g37280/C7A10_80 [Arabidopsis thaliana] gi|22655420|gb|AAM98302.1| At4g37280/C7A10_80 [Arabidopsis thaliana] gi|332661376|gb|AEE86776.1| mortality factor 4-like protein 1 [Arabidopsis thaliana]

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 202/232 (87%), Gaps = 1/232 (0%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQ+AL KKQG ++ +KSGRSAQTK +SS D K +K+D K+  AKGKKRK +SG EKDNV
Sbjct: 89  VKQKALDKKQGVEKGTKSGRSAQTKTRSSADTKADKDDTKTNAAKGKKRKHESGNEKDNV 148

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           + EKL+KIQIP++LKKQL DDWE++ Q+DK+VKLPR PNVD+IL+KYL++++KKDGM+TD
Sbjct: 149 TAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLPRSPNVDEILSKYLEFKTKKDGMVTD 208

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           S+ EILKGIR YFDKALPVMLLYKKER+QY + +VD+ SPST+YGAEHLLRLFVKLP+L 
Sbjct: 209 SVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSPSTVYGAEHLLRLFVKLPDLF 268

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGKGKDE 231
           +YVN+E+ET  R+QQ + DFLKF+QKNQSTF L SAYD  +VS+GKGKGKD+
Sbjct: 269 SYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPSAYDSDKVSDGKGKGKDD 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4006854|emb|CAB16772.1| putative protein [Arabidopsis thaliana] gi|7270711|emb|CAB80394.1| putative protein [Arabidopsis thaliana]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 202/232 (87%), Gaps = 1/232 (0%)

Query: 1   MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
           +KQ+AL KKQG ++ +KSGRSAQTK +SS D K +K+D K+  AKGKKRK +SG EKDNV
Sbjct: 96  VKQKALDKKQGVEKGTKSGRSAQTKTRSSADTKADKDDTKTNAAKGKKRKHESGNEKDNV 155

Query: 61  SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
           + EKL+KIQIP++LKKQL DDWE++ Q+DK+VKLPR PNVD+IL+KYL++++KKDGM+TD
Sbjct: 156 TAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLPRSPNVDEILSKYLEFKTKKDGMVTD 215

Query: 121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
           S+ EILKGIR YFDKALPVMLLYKKER+QY + +VD+ SPST+YGAEHLLRLFVKLP+L 
Sbjct: 216 SVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSPSTVYGAEHLLRLFVKLPDLF 275

Query: 181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGKGKDE 231
           +YVN+E+ET  R+QQ + DFLKF+QKNQSTF L SAYD  +VS+GKGKGKD+
Sbjct: 276 SYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPSAYDSDKVSDGKGKGKDD 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185895|gb|EEC68322.1| hypothetical protein OsI_36418 [Oryza sativa Indica Group]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 170/219 (77%), Gaps = 3/219 (1%)

Query: 2   KQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGT--EKDN 59
           KQQ L+K Q  D+S KSGRSAQ K K S D K +KED K  + KGKKRKS  G   EK+ 
Sbjct: 164 KQQELEKSQAVDKSVKSGRSAQHKPKGSNDAKTDKEDTK-IIVKGKKRKSQPGGTEEKER 222

Query: 60  VSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMT 119
            S E L     PSTLKKQLVDDWEFV Q  KLVKLPR P VDDIL KYL++R+KKD  + 
Sbjct: 223 KSSESLFMSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDILKKYLEHRTKKDNKIN 282

Query: 120 DSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPEL 179
           DS  EILKG+RCYFDKALP MLLYKKERQQY + V  +VSPSTIYGAEHLLRLFVKLPEL
Sbjct: 283 DSYAEILKGLRCYFDKALPAMLLYKKERQQYSEEVKGDVSPSTIYGAEHLLRLFVKLPEL 342

Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYDG 218
           LA VN+E++ L +LQQK++D LKF+QKNQS+FFLSAYDG
Sbjct: 343 LASVNMEEDALNKLQQKLLDILKFLQKNQSSFFLSAYDG 381

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2114980	320	AT4G37280 [Arabidopsis thalian	1.0	0.721	0.693	9.9e-87
TAIR|locus:2024725	327	AT1G02740 [Arabidopsis thalian	0.861	0.608	0.572	4.3e-54
DICTYBASE|DDB_G0283075	379	DDB_G0283075 "NuA4 histone H4	0.878	0.535	0.369	8.5e-33
UNIPROTKB|F1RKS0	362	MORF4L1 "Uncharacterized prote	0.900	0.574	0.344	1.2e-28
UNIPROTKB|K7GQW8	323	MORF4L1 "Uncharacterized prote	0.900	0.643	0.344	1.2e-28
UNIPROTKB|Q5NVP9	323	MORF4L1 "Mortality factor 4-li	0.900	0.643	0.344	1.9e-28
UNIPROTKB|F1N4R2	296	MORF4L1 "Uncharacterized prote	0.896	0.699	0.347	1.9e-28
UNIPROTKB|B3KTM8	348	MORF4L1 "cDNA FLJ38504 fis, cl	0.900	0.597	0.344	1.9e-28
UNIPROTKB|Q9UBU8	362	MORF4L1 "Mortality factor 4-li	0.900	0.574	0.344	1.9e-28
MGI|MGI:1096551	362	Morf4l1 "mortality factor 4 li	0.900	0.574	0.344	1.9e-28

TAIR|locus:2114980 AT4G37280 [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 161/232 (69%), Positives = 202/232 (87%)

Query:     1 MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNV 60
             +KQ+AL KKQG ++ +KSGRSAQTK +SS D K +K+D K+  AKGKKRK +SG EKDNV
Sbjct:    89 VKQKALDKKQGVEKGTKSGRSAQTKTRSSADTKADKDDTKTNAAKGKKRKHESGNEKDNV 148

Query:    61 SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD 120
             + EKL+KIQIP++LKKQL DDWE++ Q+DK+VKLPR PNVD+IL+KYL++++KKDGM+TD
Sbjct:   149 TAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLPRSPNVDEILSKYLEFKTKKDGMVTD 208

Query:   121 SIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELL 180
             S+ EILKGIR YFDKALPVMLLYKKER+QY + +VD+ SPST+YGAEHLLRLFVKLP+L 
Sbjct:   209 SVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSPSTVYGAEHLLRLFVKLPDLF 268

Query:   181 AYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGKGKDE 231
             +YVN+E+ET  R+QQ + DFLKF+QKNQSTF L SAYD  +VS+GKGKGKD+
Sbjct:   269 SYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPSAYDSDKVSDGKGKGKDD 320

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2024725 AT1G02740 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 115/201 (57%), Positives = 143/201 (71%)

Query:    27 KSSTDVKVEKEDIKS-YVAKGKKRKSDS-GTEKDNVSVEKLVKIQIPSTLKKQLVDDWEF 84
             KS+   KV K   +S  VA+G+KRK DS  TEK+ +  + L+   IP  L+KQL+DD+EF
Sbjct:   125 KSAMAWKVSKMKPRSPNVARGRKRKQDSVDTEKNVLPSDNLLSFNIPPALRKQLLDDFEF 184

Query:    85 VNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYK 144
             V Q  KLV+LPR PNVD IL KY+  + KK G +TDS+ EILKG+RCYFDKALPVMLLY 
Sbjct:   185 VTQMQKLVQLPRSPNVDGILKKYIDSQMKKHGRVTDSLEEILKGLRCYFDKALPVMLLYN 244

Query:   145 KERQQYHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFM 204
              ER+QY + V   VSPST+YGAEHLLRLFVKLPELL +VN+ +ETL  LQ   +D L+F+
Sbjct:   245 NERKQYEESVSGGVSPSTVYGAEHLLRLFVKLPELLVHVNMAEETLKELQDNFVDILRFL 304

Query:   205 QKNQSTFFLSAYDGSRVSEGK 225
             +KNQS  F+S Y      E K
Sbjct:   305 RKNQSVLFVSTYKAVEEMEKK 325

GO:0005634 "nucleus" evidence=ISM;IEA

DICTYBASE|DDB_G0283075 DDB_G0283075 "NuA4 histone H4 acetyltransferase complex subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 78/211 (36%), Positives = 120/211 (56%)

Query:     8 KKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKLVK 67
             +  G+  SS S +S      ++ +      +  +      KRK +  ++  +    K + 
Sbjct:   161 RSTGSSSSSSSSKSNNNNNNNNNNNNNNNNNNNNNNNNNNKRKRND-SKSSHFQSTKFID 219

Query:    68 IQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILK 127
             I+IP +LK +LVDDW  +N +  ++ LP+ PNV DIL K ++   K     +    E++ 
Sbjct:   220 IEIPLSLKNKLVDDWNSINNEKSILSLPKSPNVKDILNKIIEENDK-----SSECKEVIN 274

Query:   128 GIRCYFDKALPVMLLYKKERQQYHDLVVDNV--SPSTIYGAEHLLRLFVKLPELLAYVNI 185
             GI+ YF+KAL  +LLYK ER QY  ++  N   S S IYGAEHLLRLFVKLP+LL   N+
Sbjct:   275 GIKQYFNKALGTLLLYKFERPQYDSILKTNPKKSMSDIYGAEHLLRLFVKLPQLLVISNL 334

Query:   186 EDETLIRLQQKMIDFLKFMQKNQSTFFLSAY 216
             E++T+ +L+      L++++KN ST FL  Y
Sbjct:   335 EEKTITQLKDAFEIVLEYLEKNSSTLFLKEY 365

GO:0005634 "nucleus" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|F1RKS0 MORF4L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/218 (34%), Positives = 123/218 (56%)

Query:     7 QKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL- 65
             +K  G  + +   ++ + KQK+  + +           + K+ + D   E +   + ++ 
Sbjct:   135 KKTSGLQQKNVEVKTKKNKQKTPGNGEGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 194

Query:    66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS---- 121
             VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+    
Sbjct:   195 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 252

Query:   122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
             + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct:   253 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 312

Query:   180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   313 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 349

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GQW8 MORF4L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/218 (34%), Positives = 123/218 (56%)

Query:     7 QKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL- 65
             +K  G  + +   ++ + KQK+  + +           + K+ + D   E +   + ++ 
Sbjct:    96 KKTSGLQQKNVEVKTKKNKQKTPGNGEGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 155

Query:    66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS---- 121
             VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+    
Sbjct:   156 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 213

Query:   122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
             + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct:   214 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 273

Query:   180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   274 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 310

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5NVP9 MORF4L1 "Mortality factor 4-like protein 1" [Pongo abelii (taxid:9601)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 75/218 (34%), Positives = 122/218 (55%)

Query:     7 QKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL- 65
             +K  G  + +   ++ + KQK+  +             + K+ + D   E +   + ++ 
Sbjct:    96 KKTSGLQQKNVDVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 155

Query:    66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS---- 121
             VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+    
Sbjct:   156 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 213

Query:   122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
             + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct:   214 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 273

Query:   180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   274 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 310

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0016575 "histone deacetylation" evidence=ISS

GO:0016580 "Sin3 complex" evidence=ISS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0043967 "histone H4 acetylation" evidence=ISS

GO:0043968 "histone H2A acetylation" evidence=ISS

UNIPROTKB|F1N4R2 MORF4L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 76/219 (34%), Positives = 125/219 (57%)

Query:     6 LQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL 65
             LQK++   ++++  +  + K   + D     E  +    + K+ + D   E +   + ++
Sbjct:    70 LQKQRELQKANQKTKKNKQKTPGNGDGGSTSETPQP--PRKKRARVDPTVENEETFMSRV 127

Query:    66 -VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS--- 121
              VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+   
Sbjct:   128 EVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEY 185

Query:   122 -IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPE 178
              + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  
Sbjct:   186 AVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGA 245

Query:   179 LLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             +LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   246 MLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 283

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|B3KTM8 MORF4L1 "cDNA FLJ38504 fis, clone HCHON2000156, highly similar to Mortality factor 4-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 75/218 (34%), Positives = 122/218 (55%)

Query:     7 QKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL- 65
             +K  G  + +   ++ + KQK+  +             + K+ + D   E +   + ++ 
Sbjct:   121 KKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 180

Query:    66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS---- 121
             VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+    
Sbjct:   181 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 238

Query:   122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
             + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct:   239 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 298

Query:   180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   299 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 335

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9UBU8 MORF4L1 "Mortality factor 4-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 75/218 (34%), Positives = 122/218 (55%)

Query:     7 QKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL- 65
             +K  G  + +   ++ + KQK+  +             + K+ + D   E +   + ++ 
Sbjct:   135 KKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 194

Query:    66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS---- 121
             VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+    
Sbjct:   195 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 252

Query:   122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
             + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct:   253 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 312

Query:   180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   313 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 349

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0016580 "Sin3 complex" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0000724 "double-strand break repair via homologous recombination" evidence=IDA

GO:0016575 "histone deacetylation" evidence=IDA

MGI|MGI:1096551 Morf4l1 "mortality factor 4 like 1" [Mus musculus (taxid:10090)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 75/218 (34%), Positives = 122/218 (55%)

Query:     7 QKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEKDNVSVEKL- 65
             +K  G  + +   ++ + KQK+  +             + K+ + D   E +   + ++ 
Sbjct:   135 KKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 194

Query:    66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDS---- 121
             VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD+    
Sbjct:   195 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 252

Query:   122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
             + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct:   253 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 312

Query:   180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFLSAYD 217
             LAY  +++++L  L   + DFLK++ KN +T F SA D
Sbjct:   313 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-SASD 349

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0016568 "chromatin modification" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016580 "Sin3 complex" evidence=ISO

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam05712	191	pfam05712, MRG, MRG	1e-68

>gnl|CDD|218713 pfam05712, MRG, MRG

 Score =  208 bits (532), Expect = 1e-68
 Identities = 88/188 (46%), Positives = 117/188 (62%), Gaps = 13/188 (6%)

Query: 40  KSYVAKGKKRKSDSGTEK-DNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLP 98
            S  A+G KRK  S  EK DN   E  V+I IP  LKK LVDDWE++ +  KLV LP   
Sbjct: 1   SSAPARGTKRKRSSADEKEDNFRSEPRVRINIPDELKKLLVDDWEYITKDKKLVALPARV 60

Query: 99  NVDDILTKYLQYRSKKDGMMTDS-----IGEILKGIRCYFDKALPVMLLYKKERQQYHDL 153
            V  IL  Y++ R+ K    T S     + E++ G+R YF+KAL  +LLYK ER QY +L
Sbjct: 61  PVVTILEDYVKERAIKQDSSTSSARMELLEEVVDGLRIYFNKALGDLLLYKFERLQYLEL 120

Query: 154 VVDNV-------SPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQK 206
           + DN+        PS IYGAEHLLRLFVKLPELL+  N+++++L RL + + DFL+F+ K
Sbjct: 121 LKDNLLSAESDKRPSDIYGAEHLLRLFVKLPELLSQTNMDEQSLNRLLKHLEDFLRFLAK 180

Query: 207 NQSTFFLS 214
           N   +F+ 
Sbjct: 181 NAEEYFVK 188

This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation. It contains 2 chromo domains and a leucine zipper motif. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PF05712	194	MRG: MRG; InterPro: IPR008676 This family consists	100.0
KOG3001	391	consensus Dosage compensation regulatory complex/h	100.0

>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3))

Probab=100.00  E-value=4.8e-51  Score=348.51  Aligned_cols=171  Identities=49%  Similarity=0.813  Sum_probs=126.7

Q ss_pred             cccCCCCCCCCCcccccccccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--Ccc---
Q 026884           44 AKGKKRKSDSGTEKDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD--GMM---  118 (231)
Q Consensus        44 ~r~~kr~~~~~~e~~~~~~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~--~~~---  118 (231)
                      +||+||++++  +++.....++++|.||..||.+|||||++|+++++|++|||++||++||++|+++.....  ...   
T Consensus         4 ~~~~~~~~~~--~~~~~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~   81 (194)
T PF05712_consen    4 ARGKKRRRSS--SEDDSEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAE   81 (194)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---TH
T ss_pred             cccCCCCCcc--cccccccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHH
Confidence            4666666654  234557888999999999999999999999999999999999999999999999987432  111   


Q ss_pred             --hhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhC------------CCCCccccchhHHHHHHhhhhHHhccCC
Q 026884          119 --TDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD------------NVSPSTIYGAEHLLRLFVKLPELLAYVN  184 (231)
Q Consensus       119 --~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~------------~~~pS~iYGa~HLLRLfvkLPell~~t~  184 (231)
                        ...+.|++.||+.|||++||.+|||++||+||.+++..            +.+||++||++|||||||+||+||+.++
T Consensus        82 ~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~  161 (194)
T PF05712_consen   82 QERDLLKEVADGLRDYFNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTN  161 (194)
T ss_dssp             H--HHHHHHHHHHHHHHHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCC
Confidence              14689999999999999999999999999999999754            3599999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 026884          185 IEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAY  216 (231)
Q Consensus       185 ~d~~~~~~l~~~l~~fL~fL~~n~~~~F~-~dY  216 (231)
                      |++++++.|..++.+||+||++|.+.||. ++|
T Consensus       162 ~~~~~~~~l~~~l~~fl~fL~~n~~~~f~~~~y  194 (194)
T PF05712_consen  162 MDEESINILLEHLQDFLKFLEKNSEEYFSEEDY  194 (194)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHTHHHHS-GGGE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999999999999999999 666

It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.

>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.9e-35  Score=273.06  Aligned_cols=172  Identities=40%  Similarity=0.658  Sum_probs=150.5

Q ss_pred             ccccccccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--Cc-chhhHHHHHHHHHHHH
Q 026884           57 KDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD--GM-MTDSIGEILKGIRCYF  133 (231)
Q Consensus        57 ~~~~~~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~--~~-~~~~~~Ev~~Gl~~YF  133 (231)
                      ...+...+++.+.||..|+.+|+|||+.|++..+++.+|+.++|+.|+..|........  +. ....+.+...|++.||
T Consensus       211 ~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~~~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yf  290 (391)
T KOG3001|consen  211 PPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDSLAELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYF  290 (391)
T ss_pred             CCCCCccccccccCchhhcccccchhhhhhhhhhhhcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeee
Confidence            44455677899999999999999999999999999999999999999999987765332  11 1122344458999999


Q ss_pred             HHhCCccCCChhhHhhHHHhhhCCC---CCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhh
Q 026884          134 DKALPVMLLYKKERQQYHDLVVDNV---SPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQST  210 (231)
Q Consensus       134 n~~L~~~LLY~~ER~QY~~~~~~~~---~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~  210 (231)
                      |.+||.+|||++||.||.++..+..   +||++|||+|||||||+||+||.+++|++++++.|..++++|++||.+|...
T Consensus       291 n~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyGa~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~  370 (391)
T KOG3001|consen  291 NGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYGAEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSAS  370 (391)
T ss_pred             cccchhhhhhhhhhHHHHHHHhcCCCCCCcccchhHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999984322   4999999999999999999999999999999999999999999999999977


Q ss_pred             hcc-ccCCCCChhhhhccC
Q 026884          211 FFL-SAYDGSRVSEGKGKG  228 (231)
Q Consensus       211 ~F~-~dY~~~~~eY~~~~~  228 (231)
                      ||. ++|.+++++|.+.+-
T Consensus       371 ~f~~s~y~~~~~e~~~~~~  389 (391)
T KOG3001|consen  371 FFSSSDYSNASPEYSSSSL  389 (391)
T ss_pred             cccccchhhhchhhhhccc
Confidence            777 999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2lkm_B	172	Structural Basis For Molecular Interactions Involvi		8e-28
2aql_A	173	Crystal Structure Of The Mrg15 Mrg Domain Length =		3e-27
2f5j_A	181	Crystal Structure Of Mrg Domain From Human Mrg15 Le		3e-27
2y0n_A	211	Crystal Structure Of The Complex Between Dosage Com		7e-21

>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg Domains: Implications In Chromatin Biology Length = 172

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 66  VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 121
           VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  YR  +    TD    +
Sbjct: 5   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGN--TDNKEYA 62
Query: 122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
           + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct: 63  VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 122
Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 212
           LAY  +++++L  L   + DFLK++ KN +T F
Sbjct: 123 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 155

>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain Length = 173

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 66  VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 121
           VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD    +
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
           + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct: 64  VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 212
           LAY  +++++L  L   + DFLK++ KN +T F
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156

>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15 Length = 181

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 66  VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 121
           VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +    TD    +
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
           + E++ GI+ YF+  L   LLYK ER QY +++ D+  +P S +YGA HLLRLFV++  +
Sbjct: 64  VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 212
           LAY  +++++L  L   + DFLK++ KN +T F
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156

>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage Compensation Factors Msl1 And Msl3 Length = 211

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 39/196 (19%)
Query: 63  EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQY-----------R 111
           E+ + I+IP  LKKQL DD  ++N++ +LVKLP   N+  IL  Y+++           R
Sbjct: 5   ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 112 SKKDGMM---------------TDSIGEILKGIRCYFDKALPVMLLYKKERQQY------ 150
            +   +M                D   E++ G+R  FD  LP++LLY  E+ QY      
Sbjct: 65  PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 151 -HDLVVDN-----VSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFM 204
            +D+           PS IYGA+HLLRLFVKLPE+L  ++  ++ L  L +    FL+F+
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184
Query: 205 QKNQSTFFL-SAYDGS 219
            +    FF  SAY  +
Sbjct: 185 AEYHDDFFPESAYVAA 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
2f5j_A	181	Mortality factor 4-like protein 1; MRG fold, mainl	8e-55
2y0n_A	211	MALE-specific lethal 3 homolog; transcription, chr	3e-46

>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B Length = 181

 Score =  172 bits (438), Expect = 8e-55
 Identities = 63/157 (40%), Positives = 95/157 (60%), Gaps = 5/157 (3%)

Query: 66  VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMT--DSIG 123
           VK++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y+  +        ++ 
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65

Query: 124 EILKGIRCYFDKALPVMLLYKKERQQYHDLVVD--NVSPSTIYGAEHLLRLFVKLPELLA 181
           E++ GI+ YF+  L   LLYK ER QY +++ D  +   S +YGA HLLRLFV++  +LA
Sbjct: 66  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125

Query: 182 YVNIEDETLIRLQQKMIDFLKFMQKNQSTFF-LSAYD 217
           Y  +++++L  L   + DFLK++ KN +T F  S Y+
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYE 162

>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens} Length = 211

 Score =  151 bits (383), Expect = 3e-46
 Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 38/192 (19%)

Query: 63  EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGM----- 117
           E+ + I+IP  LKKQL DD  ++N++ +LVKLP   N+  IL  Y+++ +          
Sbjct: 5   ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64

Query: 118 ---------------------MTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD 156
                                  D   E++ G+R  FD  LP++LLY  E+ QY  +   
Sbjct: 65  PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124

Query: 157 N------------VSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFM 204
                          PS IYGA+HLLRLFVKLPE+L  ++  ++ L  L +    FL+F+
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184

Query: 205 QKNQSTFFLSAY 216
            +    FF  + 
Sbjct: 185 AEYHDDFFPESA 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2f5j_A	181	Mortality factor 4-like protein 1; MRG fold, mainl	100.0
2y0n_A	211	MALE-specific lethal 3 homolog; transcription, chr	100.0
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	86.15

>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B

Probab=100.00  E-value=9.5e-57  Score=379.37  Aligned_cols=169  Identities=37%  Similarity=0.643  Sum_probs=148.7

Q ss_pred             cccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCC--cchhhHHHHHHHHHHHHHHhCCc
Q 026884           62 VEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDG--MMTDSIGEILKGIRCYFDKALPV  139 (231)
Q Consensus        62 ~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~~--~~~~~~~Ev~~Gl~~YFn~~L~~  139 (231)
                      ++++++|.||+.||.+|||||++||++++|++|||++||++||++|+++....+.  ...+++.|+++||++|||++||.
T Consensus         2 ~~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~   81 (181)
T 2f5j_A            2 NRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGT   81 (181)
T ss_dssp             ----CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHccc
Confidence            4678999999999999999999999999999999999999999999999876442  22357899999999999999999


Q ss_pred             cCCChhhHhhHHHhhh--CCCCCccccchhHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 026884          140 MLLYKKERQQYHDLVV--DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAY  216 (231)
Q Consensus       140 ~LLY~~ER~QY~~~~~--~~~~pS~iYGa~HLLRLfvkLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~-~dY  216 (231)
                      +|||++||+||.++++  ++.+||++|||+|||||||+||+||+.++||+++++.|+.++.+||+||++|.++||. ++|
T Consensus        82 ~LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y  161 (181)
T 2f5j_A           82 QLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDY  161 (181)
T ss_dssp             HSCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGE
T ss_pred             ccCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhc
Confidence            9999999999999985  3458999999999999999999999999999999999999999999999999999995 999


Q ss_pred             CCCChhhhhccCCC
Q 026884          217 DGSRVSEGKGKGKD  230 (231)
Q Consensus       217 ~~~~~eY~~~~~~~  230 (231)
                      ++++|+|++.|.+.
T Consensus       162 ~~~~~eY~~~~~~~  175 (181)
T 2f5j_A          162 EVAPPEYHRKAVLE  175 (181)
T ss_dssp             EECCHHHHC-----
T ss_pred             CCCCHHHHHHHhhh
Confidence            99999999998764

>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-54  Score=370.55  Aligned_cols=166  Identities=39%  Similarity=0.613  Sum_probs=142.9

Q ss_pred             cccceEeeCChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--------------------------
Q 026884           62 VEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD--------------------------  115 (231)
Q Consensus        62 ~~~~i~i~iP~~Lk~~LvdD~e~Vtk~~~L~~LP~~~tV~~IL~~Y~~~~~~~~--------------------------  115 (231)
                      .+++|+|.||+.||++|||||++||++++|++|||++||++||++|+++.....                          
T Consensus         4 ~~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~   83 (211)
T 2y0n_A            4 EERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPA   83 (211)
T ss_dssp             ---CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------C
T ss_pred             CCceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccch
Confidence            457899999999999999999999999999999999999999999998864210                          


Q ss_pred             CcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhC------------CCCCccccchhHHHHHHhhhhHHhccC
Q 026884          116 GMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD------------NVSPSTIYGAEHLLRLFVKLPELLAYV  183 (231)
Q Consensus       116 ~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~------------~~~pS~iYGa~HLLRLfvkLPell~~t  183 (231)
                      ....+.++|+++||++|||++||.+|||++||+||.+++..            +.+||++|||+|||||||+||+||+.+
T Consensus        84 ~~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t  163 (211)
T 2y0n_A           84 EKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKM  163 (211)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcC
Confidence            01235689999999999999999999999999999999842            358999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCCCCChhhhhcc
Q 026884          184 NIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGK  227 (231)
Q Consensus       184 ~~d~~~~~~l~~~l~~fL~fL~~n~~~~F~-~dY~~~~~eY~~~~  227 (231)
                      +||+++++.|+.++++||+||++|.++||. ++|++++++|++..
T Consensus       164 ~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~~  208 (211)
T 2y0n_A          164 SFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTK  208 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC--------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhhc
Confidence            999999999999999999999999999996 89999988887653

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=86.15  E-value=7.8  Score=28.01  Aligned_cols=90  Identities=12%  Similarity=0.074  Sum_probs=55.3

Q ss_pred             CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhhHhhHHHhhhCCCCCccccchhHHHHHHh
Q 026884           95 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV  174 (231)
Q Consensus        95 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~ER~QY~~~~~~~~~pS~iYGa~HLLRLfv  174 (231)
                      |...|+.+.+++|+++.. . +....-+......|+.+++.+-..-+                ..+++ -...++-+.+.
T Consensus         4 ~~~~t~~~~~~~fl~~l~-~-~~s~~Ti~~Y~~~l~~f~~~l~~~~~----------------~~l~~-it~~~i~~y~~   64 (117)
T 3nrw_A            4 RPSLSPREARDRYLAHRQ-T-DAADASIKSFRYRLKHFVEWAEERDI----------------TAMRE-LTGWKLDEYET   64 (117)
T ss_dssp             CCCCCHHHHHHHHHHHHT-T-TSCHHHHHHHHHHHHHHHHHHHHTTC----------------CSGGG-CCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHcCC----------------CChHH-CCHHHHHHHHH
Confidence            677899999999999886 3 22333344444455555443210000                01111 13344555554


Q ss_pred             hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 026884          175 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN  207 (231)
Q Consensus       175 kLPell~~t~~d~~~~~~l~~~l~~fL~fL~~n  207 (231)
                      .|-    ..++.+.+++.....|..|++|+.+.
T Consensus        65 ~l~----~~~~s~~Ti~~~ls~lr~f~~~l~~~   93 (117)
T 3nrw_A           65 FRR----GSDVSPATLNGEMQTLKNWLEYLARI   93 (117)
T ss_dssp             HHH----TSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH----hCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            432    25689999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	81.11

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.11  E-value=9.1  Score=28.79  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=35.5

Q ss_pred             eCChhHHHHHHHHH-HHhhhCCceeeCCCCCCH-HHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHHhCCccCCChhh
Q 026884           69 QIPSTLKKQLVDDW-EFVNQQDKLVKLPRLPNV-DDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKE  146 (231)
Q Consensus        69 ~iP~~Lk~~LvdD~-e~Vtk~~~L~~LP~~~tV-~~IL~~Y~~~~~~~~~~~~~~~~Ev~~Gl~~YFn~~L~~~LLY~~E  146 (231)
                      .+|..|..++.-=. .-+. ..-++++|...+. .++.+.| +.-...+-...+.+..++.-|+.||.. |+.-|+-...
T Consensus        23 ~vP~~l~~~~~~l~~~gl~-~eGIFR~~g~~~~i~~l~~~~-~~~~~~~~~~~~~~~~va~~lK~fLr~-Lp~pLi~~~~   99 (196)
T d1tx4a_          23 PIPIVLRETVAYLQAHALT-TEGIFRRSANTQVVREVQQKY-NMGLPVDFDQYNALHLPAVILKTFLRE-LPEPLLTFDL   99 (196)
T ss_dssp             SSCHHHHHHHHHHHHHCTT-CTTTTTSCCCHHHHHHHHHHH-HTTCCCCGGGSSCTHHHHHHHHHHHHH-SSSCTTCGGG
T ss_pred             CCChHHHHHHHHHHHcCCC-CCCeeecCCcHHHHHHHHHHH-hCCCCccccccccHHHHHHHHHHHHHh-CCCCcchHHH
Confidence            47887766543211 1122 2247888887664 4444444 321111100111233455557777755 5555655443