Citrus Sinensis ID: 026903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccccccHHHHcccccccEEEcccccccccccccccHHHcccHHHHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHccccccccEEEEccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHccccccccccccccccccccccEccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccEEEEEEccHHHHHHHHHHccccccccEEEEEEcccEcccccccccEEEEHHEHHHccHHHHHHHHHHHHHHcccccEEEEEEEccHHHcccccccccccc
Coil and Loop (DISEMBL)
mrtvsrgmISNAlrfsfsipnilqlpissvrtrsfgiratkpkmgknreevendnvikshprVNKLQQLMHIEssggwekcweegltpwdigqpapiIVHLhqsgalpkgralvpgcgtgydvvamasperYVVGLEISDIAIKKAEElssslpnakfvsflkadfftwcptelFDLIFDYTFFCAIEPEMRAAWAQKIKDFLkpdgelitlmfpisdhvggppykvsvse
Flexible Loop (DISEMBL)
mrtvsrgmISNALRFsfsipnilqlpissvrtrsfgiratkpkmgknreevendnvikshprvNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMfpisdhvggppykvsvse
Low Complexity Region (SEG)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE
Disordered region (IsUnstruct)
********ISNALRFSFSIPNILQLPISSVRTRSFG*****************************LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV***********
Disordered Region (DISOPRED)
***********ALRFSFSIPNILQLPISSVRTRS*****************************************GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG***Y******
Disordered Region (DISEMBL)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE
Disordered Region (DISPRO)
*****R**ISNALRFSFSIPNILQLPISSV*T**F*IR*******************KSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q0WP12	246	Thiocyanate methyltransfe	yes	no	0.787	0.739	0.623	6e-64
Q6AWU6	226	Probable thiol methyltran	no	no	0.718	0.734	0.662	7e-64
Q93V78	226	Thiocyanate methyltransfe	N/A	no	0.670	0.685	0.696	1e-62
Q93XC4	226	Probable thiocyanate meth	N/A	no	0.670	0.685	0.690	3e-62
O80562	227	Probable thiol methyltran	no	no	0.692	0.704	0.65	9e-61
C3LLS2	218	Thiopurine S-methyltransf	yes	no	0.662	0.701	0.285	3e-11
Q9KSN0	218	Thiopurine S-methyltransf	yes	no	0.662	0.701	0.285	3e-11
A5F1V4	218	Thiopurine S-methyltransf	yes	no	0.662	0.701	0.279	8e-11
A7MVH9	216	Thiopurine S-methyltransf	yes	no	0.658	0.703	0.289	3e-10
Q87Q54	216	Thiopurine S-methyltransf	yes	no	0.658	0.703	0.266	4e-10

>sp|Q0WP12|HOL1_ARATH Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 140/186 (75%), Gaps = 4/186 (2%)

Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182

Query: 225 YKVSVS 230
           YKV VS
Sbjct: 183 YKVDVS 188

S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 4

>sp|Q6AWU6|HOL3_ARATH Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1

 Score =  243 bits (620), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 133/166 (80%)

Query: 66  LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA 125
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVA
Sbjct: 17  FHRLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVA 76

Query: 126 MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
           MASP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFC
Sbjct: 77  MASPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFC 136

Query: 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
           A EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVSE
Sbjct: 137 AFEPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSE 182

S-adenosyl-L-methionine-dependent methyltransferase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q93V78|TMT1_BRAOL Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 108/155 (69%), Positives = 129/155 (83%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD G+  P++VHL  S +LP GRALVPGCG G+DVVAMASPER+VVG
Sbjct: 33  GGWEKCWEDGITPWDQGRATPLVVHLVDSSSLPLGRALVPGCGGGHDVVAMASPERFVVG 92

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+IS+ A++KA E   S P AK+ +F+K DFFTW P ELFDLIFDY  FCAIEPEMR AW
Sbjct: 93  LDISESALEKAAETYGSSPKAKYFTFVKEDFFTWRPNELFDLIFDYVVFCAIEPEMRPAW 152

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230
           A+ + + LKPDGELITLM+PI+DH GGPPYKV+VS
Sbjct: 153 AKSMYELLKPDGELITLMYPITDHDGGPPYKVAVS 187

S-adenosyl-L-methionine-dependent methyltransferase. Probably involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage. Also accepts halid ions as substrates with a lower affinity.

Brassica oleracea (taxid: 3712)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q93XC4|TMT2_BRAOL Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1

 Score =  238 bits (606), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 128/155 (82%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD G+  P++VHL +S +LP GR LVPGCG G+DVVAMASPERYVVG
Sbjct: 33  GGWEKCWEDGVTPWDQGRATPLVVHLVESSSLPLGRGLVPGCGGGHDVVAMASPERYVVG 92

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+IS+ A++KA E   S P AK+ +F+K DFFTW P ELFDLIFDY  FCAIEPE R AW
Sbjct: 93  LDISESALEKAAETYGSSPKAKYFTFVKEDFFTWRPNELFDLIFDYVVFCAIEPETRPAW 152

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230
           A+ + + LKPDGELITLM+PI+DH GGPPYKV+VS
Sbjct: 153 AKAMYELLKPDGELITLMYPITDHDGGPPYKVAVS 187

S-adenosyl-L-methionine-dependent methyltransferase. Probably involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage (By similarity). Also accepts halid ions as substrates.

Brassica oleracea (taxid: 3712)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|O80562|HOL2_ARATH Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1

 Score =  233 bits (594), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 127/160 (79%)

Query: 71  HIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE 130
            + + GGW+KCWE+G+TPWD G+  P+I+HL  S ALP GR LVPGCG G+DVVAMASPE
Sbjct: 29  QVVAEGGWDKCWEDGVTPWDQGRATPLILHLLDSSALPLGRTLVPGCGGGHDVVAMASPE 88

Query: 131 RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPE 190
           R+VVGL+ISD A+ KA E   S P A++ SF+K D FTW P ELFDLIFDY FFCAIEPE
Sbjct: 89  RFVVGLDISDKALNKANETYGSSPKAEYFSFVKEDVFTWRPNELFDLIFDYVFFCAIEPE 148

Query: 191 MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230
           MR AW + + + LKPDGELITLM+P++DH GG PYKV++S
Sbjct: 149 MRPAWGKSMHELLKPDGELITLMYPMTDHEGGAPYKVALS 188

S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|C3LLS2|TPMT_VIBCM Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tpm PE=3 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKVSVSE 231
            A+  EMRA +AQ++   LKP G  L+  M  +   + GPP+ V  +E
Sbjct: 126 VALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAE 173

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|Q9KSN0|TPMT_VIBCH Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=tpm PE=3 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKVSVSE 231
            A+  EMRA +AQ++   LKP G  L+  M  +   + GPP+ V  +E
Sbjct: 126 VALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAE 173

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|A5F1V4|TPMT_VIBC3 Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tpm PE=3 SV=1

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 15/168 (8%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKVSVSE 231
            A+  EMR  +AQ++   LKP G  L+  M  +   + GPP+ V  +E
Sbjct: 126 VALPEEMRTEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAE 173

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|A7MVH9|TPMT_VIBHB Thiopurine S-methyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=tpm PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 17/169 (10%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQ-SGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P++    Q +    +   LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWASNQIGFHLDDVNPLLPAFWQYTNPKREDTVLVPLCGKSEDLIWLATKHDEVQGV 66

Query: 137 EISDIAIKK--AEELSS----------SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +           L     +S    DFFT  P    D+I+D    
Sbjct: 67  ELSLIAVRAFFAEHFYTPTVTPVNGMHELYQFDELSIYTGDFFT-APVSKADIIYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
            A+  EMR  +A ++K  L P G   L+TL +P  D + GPP+ V V E
Sbjct: 126 VALPKEMREEYANRVKQLLNPGGRILLVTLNYP-QDEMSGPPFSVPVEE 173

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|Q87Q54|TPMT_VIBPA Thiopurine S-methyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tpm PE=3 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 78  WEKCWEEGLTPWDIGQPAPII-VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P++  + H +    + + LVP CG   D+V +A+    V G+
Sbjct: 7   WHSKWASNQIGFHLEDVNPLLPAYWHHANPKREDKVLVPLCGKSEDLVWLATKHDSVEGV 66

Query: 137 EISDIAIKK--AEELSS----------SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +           L     +S    DFFT  P    D+++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTPISGMHELYQFDELSIYTGDFFT-APVSQADIVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
            A+  +MR  +  ++K  L P G   L+TL +P  + + GPP+ V + E
Sbjct: 126 VALPQDMREEYVARLKQLLNPGGRILLVTLNYP-QEEMAGPPFSVPLEE 173

Vibrio parahaemolyticus (taxid: 670)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
296084363	291	unnamed protein product [Vitis vinifera]	0.835	0.663	0.638	9e-73
359478233	225	PREDICTED: probable thiol methyltransfer	0.779	0.8	0.688	5e-72
255576426	198	Thiopurine S-methyltransferase, putative	0.675	0.787	0.769	1e-71
224140695	192	predicted protein [Populus trichocarpa]	0.675	0.812	0.788	3e-70
449453195	259	PREDICTED: probable thiol methyltransfer	0.839	0.749	0.637	6e-68
359478304	274	PREDICTED: probable thiol methyltransfer	0.783	0.660	0.653	1e-64
296084364	224	unnamed protein product [Vitis vinifera]	0.783	0.808	0.653	1e-64
413953152	252	hypothetical protein ZEAMMB73_246013 [Ze	0.831	0.761	0.572	5e-63
253787624	226	S-adenosylmethionine: halide ion methylt	0.809	0.827	0.614	7e-63
145331123	246	thiocyanate methyltransferase 1 [Arabido	0.787	0.739	0.623	4e-62

>gi|296084363|emb|CBI24751.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/199 (63%), Positives = 159/199 (79%), Gaps = 6/199 (3%)

Query: 33  RSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIG 92
           ++ G+  T+ +M  N   +E      S+P+V KL Q++  +S+GGWEK W++G TPWD+G
Sbjct: 56  KNLGVSTTQLRMSNNGSSIE------SNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLG 109

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152
           +P PII HLHQ+G LP G+ LVPGCG GYDVV +A PER+VVGL+ISD AIKKA+ELSSS
Sbjct: 110 KPTPIIQHLHQTGTLPSGKTLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSS 169

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
           L NA   +FLK DFFTW PTELFDLIFDYTFFCAIEP+MR+ WA++++  LKPDGEL+TL
Sbjct: 170 LWNANHFTFLKEDFFTWNPTELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTL 229

Query: 213 MFPISDHVGGPPYKVSVSE 231
           MFPISDH GGPPYKVSV++
Sbjct: 230 MFPISDHAGGPPYKVSVAD 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478233|ref|XP_002275789.2| PREDICTED: probable thiol methyltransferase 2 [Vitis vinifera]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%)

Query: 52  ENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGR 111
            N + I+S+P+V KL Q++  +S+GGWEK W++G TPWD+G+P PII HLHQ+G LP G+
Sbjct: 3   NNGSSIESNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLGKPTPIIQHLHQTGTLPSGK 62

Query: 112 ALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171
            LVPGCG GYDVV +A PER+VVGL+ISD AIKKA+ELSSSL NA   +FLK DFFTW P
Sbjct: 63  TLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSSLWNANHFTFLKEDFFTWNP 122

Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
           TELFDLIFDYTFFCAIEP+MR+ WA++++  LKPDGEL+TLMFPISDH GGPPYKVSV++
Sbjct: 123 TELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTLMFPISDHAGGPPYKVSVAD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576426|ref|XP_002529105.1| Thiopurine S-methyltransferase, putative [Ricinus communis] gi|223531456|gb|EEF33289.1| Thiopurine S-methyltransferase, putative [Ricinus communis]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 145/156 (92%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD+GQP PI++HLH +G+LPKGRAL+PGCG+G+DV+A+A PERYVVG
Sbjct: 12  GGWEKCWEQGVTPWDLGQPTPILLHLHHTGSLPKGRALIPGCGSGHDVIAIACPERYVVG 71

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+I++ A+KKAEELSSSLPNA + +FLKADFF+W PTELFDLIFDYTFFCAIEPEMR+ W
Sbjct: 72  LDIAEKAVKKAEELSSSLPNANYCTFLKADFFSWQPTELFDLIFDYTFFCAIEPEMRSQW 131

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
           A +I+D LKPDGELITL+FPI DH+GGPPYKVSVS+
Sbjct: 132 AIRIQDLLKPDGELITLIFPIDDHLGGPPYKVSVSD 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140695|ref|XP_002323714.1| predicted protein [Populus trichocarpa] gi|222866716|gb|EEF03847.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 141/156 (90%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWE CWE+GLTPWD+G+P PII+HLHQ+GALPKGRALVPGCG+GYDVVAMA  ERYVVG
Sbjct: 1   GGWENCWEQGLTPWDLGRPTPIILHLHQTGALPKGRALVPGCGSGYDVVAMACSERYVVG 60

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L++S  AI+KA ELSSSLPN+ + +FLKADFFTW P ELFDLIFDYTFFCAIEP MR+ W
Sbjct: 61  LDVSHTAIEKAIELSSSLPNSSYFTFLKADFFTWHPPELFDLIFDYTFFCAIEPGMRSRW 120

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
           A K+++ LKPDGELITLM+PISDHVGGPPYKVSVS+
Sbjct: 121 ACKVQEMLKPDGELITLMYPISDHVGGPPYKVSVSD 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453195|ref|XP_004144344.1| PREDICTED: probable thiol methyltransferase 2-like [Cucumis sativus]

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 150/196 (76%), Gaps = 2/196 (1%)

Query: 38  RATKPKMGKNREEVE-NDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAP 96
           RA   K+  N+   + N +      RV++ Q++M  + SGGW+ CWE+GLTPWD+GQP P
Sbjct: 21  RALTLKLRMNQNSTQHNASKFNHQSRVHEFQKVMGTDHSGGWDICWEQGLTPWDLGQPTP 80

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA 156
           +I HL  +GALP GR LVPGCG+GYDVV MA  ERYVVGL+ISD AI+KA ELSSS PN 
Sbjct: 81  LIGHLCATGALPNGRVLVPGCGSGYDVVQMACAERYVVGLDISDKAIQKAIELSSSSPNM 140

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
           +  +FLK DFF+W P ELFDLIFDYTFFCAIEP MR AW Q+I+  LKP+GELITLMFPI
Sbjct: 141 RHCTFLKEDFFSWRPKELFDLIFDYTFFCAIEPVMRQAWGQQIQRLLKPNGELITLMFPI 200

Query: 217 -SDHVGGPPYKVSVSE 231
             DH+GGPPYKVSVS+
Sbjct: 201 DDDHIGGPPYKVSVSD 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478304|ref|XP_002275814.2| PREDICTED: probable thiol methyltransferase 2 [Vitis vinifera]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/182 (65%), Positives = 147/182 (80%), Gaps = 1/182 (0%)

Query: 51  VENDNV-IKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPK 109
           + ND+  I+S+  + K+ Q++    +G WE+ W++GLTPWD+G+  PII HLHQ+GALP 
Sbjct: 1   MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPN 60

Query: 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           GR L+PGCG GYDVVA+A PER+VVGL+ISD AIKKA+E SSS  NA    FLKADFFTW
Sbjct: 61  GRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTW 120

Query: 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV 229
            PTELFDLI DYTFFCAIEP+MR AWA +++  LKPDGEL+TLMFPISDH GGPPYKVS+
Sbjct: 121 NPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSI 180

Query: 230 SE 231
           ++
Sbjct: 181 AD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084364|emb|CBI24752.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/182 (65%), Positives = 147/182 (80%), Gaps = 1/182 (0%)

Query: 51  VENDNV-IKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPK 109
           + ND+  I+S+  + K+ Q++    +G WE+ W++GLTPWD+G+  PII HLHQ+GALP 
Sbjct: 1   MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPN 60

Query: 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           GR L+PGCG GYDVVA+A PER+VVGL+ISD AIKKA+E SSS  NA    FLKADFFTW
Sbjct: 61  GRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTW 120

Query: 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV 229
            PTELFDLI DYTFFCAIEP+MR AWA +++  LKPDGEL+TLMFPISDH GGPPYKVS+
Sbjct: 121 NPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSI 180

Query: 230 SE 231
           ++
Sbjct: 181 AD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413953152|gb|AFW85801.1| hypothetical protein ZEAMMB73_246013 [Zea mays]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 148/199 (74%), Gaps = 7/199 (3%)

Query: 33  RSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIG 92
           R+ G  A     G  R+  EN       P V +L++L   +++ GWEK WE G+TPWD+G
Sbjct: 18  RAMGSSAPVRAAGGTRDPGEN-------PAVGRLRELFTGDAADGWEKSWEFGVTPWDLG 70

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152
           +P P+I HL +SG LPKGRALVPGCG GYDVVA+ASPER+VVGL+ISD+A+KKA++ SSS
Sbjct: 71  KPTPVIEHLARSGTLPKGRALVPGCGMGYDVVALASPERFVVGLDISDMAVKKAKQWSSS 130

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
           LPNA + +FL  DFF W P+E FDLIFDYTFFCA++P +R AWA+ +   LKPDGEL+TL
Sbjct: 131 LPNADYFTFLAEDFFKWIPSEQFDLIFDYTFFCALDPSLRVAWAETVNRLLKPDGELLTL 190

Query: 213 MFPISDHVGGPPYKVSVSE 231
           ++ ISD  GGPPY  +V++
Sbjct: 191 IYLISDQEGGPPYNNTVAD 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253787624|dbj|BAH84870.1| S-adenosylmethionine: halide ion methyltransferase [Raphanus sativus]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 143/187 (76%)

Query: 44  MGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
           M + ++   N N     P  +  + L      GGWEKCWE+G+TPWD G+  P++VHL +
Sbjct: 1   MAEGQQNSGNSNGENIIPPEDVAKFLPKTVEEGGWEKCWEDGVTPWDQGRATPLVVHLVE 60

Query: 104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
           S +LP GRALVPGCG G+DVVAMASPERYVVGL+IS+ A++KA E  +S P AK+ +F+K
Sbjct: 61  SSSLPLGRALVPGCGGGHDVVAMASPERYVVGLDISESALEKAAETYASSPKAKYFTFVK 120

Query: 164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
            DFFTW P+ELFDLIFDY  FCAIEPEMRAAWA+ + + LKPDGELITLM+PI+DH GGP
Sbjct: 121 EDFFTWRPSELFDLIFDYVVFCAIEPEMRAAWAKTMYELLKPDGELITLMYPITDHDGGP 180

Query: 224 PYKVSVS 230
           PYKV+VS
Sbjct: 181 PYKVAVS 187

Source: Raphanus sativus

Species: Raphanus sativus

Genus: Raphanus

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145331123|ref|NP_001078053.1| thiocyanate methyltransferase 1 [Arabidopsis thaliana] gi|122229981|sp|Q0WP12.1|HOL1_ARATH RecName: Full=Thiocyanate methyltransferase 1; AltName: Full=Protein HARMLESS TO OZONE LAYER 1; Short=AtHOL1 gi|110738422|dbj|BAF01137.1| putative methyl chloride transferase [Arabidopsis thaliana] gi|330255250|gb|AEC10344.1| thiocyanate methyltransferase 1 [Arabidopsis thaliana]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 140/186 (75%), Gaps = 4/186 (2%)

Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182

Query: 225 YKVSVS 230
           YKV VS
Sbjct: 183 YKVDVS 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2051728	246	HOL1 "HARMLESS TO OZONE LAYER	0.783	0.735	0.625	7.1e-61
TAIR|locus:2051824	226	HOL3 "HARMLESS TO OZONE LAYER	0.709	0.725	0.670	3.9e-60
UNIPROTKB|Q93V78	226	TMT1 "Thiocyanate methyltransf	0.809	0.827	0.598	1e-59
TAIR|locus:2051784	227	HOL2 "HARMLESS TO OZONE LAYER	0.688	0.700	0.654	1.4e-57
ASPGD|ASPL0000006893	283	AN6094 [Emericella nidulans (t	0.294	0.240	0.404	7.3e-19
UNIPROTKB|Q9KSN0	218	tpm "Thiopurine S-methyltransf	0.658	0.697	0.289	4.4e-13
TIGR_CMR|VC_1226	218	VC_1226 "thiopurine methyltran	0.658	0.697	0.289	4.4e-13
UNIPROTKB|O06426	241	MT0586 "Uncharacterized protei	0.688	0.659	0.307	6.8e-08
TIGR_CMR|SO_0582	218	SO_0582 "thiopurine S-methyltr	0.636	0.674	0.258	2.9e-05
UNIPROTKB|O69667	233	Rv3699 "Conserved protein" [My	0.558	0.553	0.257	0.00019

TAIR|locus:2051728 HOL1 "HARMLESS TO OZONE LAYER 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 117/187 (62%), Positives = 142/187 (75%)

Query:    46 KNREEVENDNVIKSHPRVNKLQQLMH--IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
             +N ++    NVI   P   ++   +H  +E  GGWEKCWEE +TPWD G+  P+IVHL  
Sbjct:     6 QNSDQSNGGNVI---PTPEEVATFLHKTVEE-GGWEKCWEEEITPWDQGRATPLIVHLVD 61

Query:   104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
             + +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K
Sbjct:    62 TSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVK 121

Query:   164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGP
Sbjct:   122 EDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP 181

Query:   224 PYKVSVS 230
             PYKV VS
Sbjct:   182 PYKVDVS 188

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

GO:0019762 "glucosinolate catabolic process" evidence=IDA

TAIR|locus:2051824 HOL3 "HARMLESS TO OZONE LAYER 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 110/164 (67%), Positives = 133/164 (81%)

Query:    68 QLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA 127
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVAMA
Sbjct:    19 RLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVAMA 78

Query:   128 SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187
             SP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFCA 
Sbjct:    79 SPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFCAF 138

Query:   188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
             EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVSE
Sbjct:   139 EPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSE 182

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|Q93V78 TMT1 "Thiocyanate methyltransferase 1" [Brassica oleracea (taxid:3712)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 112/187 (59%), Positives = 139/187 (74%)

Query:    44 MGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
             M + +++  + N     P     + L      GGWEKCWE+G+TPWD G+  P++VHL  
Sbjct:     1 MAEEQQKAGHSNGENIIPPEEVAKFLPETVEEGGWEKCWEDGITPWDQGRATPLVVHLVD 60

Query:   104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
             S +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A++KA E   S P AK+ +F+K
Sbjct:    61 SSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALEKAAETYGSSPKAKYFTFVK 120

Query:   164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              DFFTW P ELFDLIFDY  FCAIEPEMR AWA+ + + LKPDGELITLM+PI+DH GGP
Sbjct:   121 EDFFTWRPNELFDLIFDYVVFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHDGGP 180

Query:   224 PYKVSVS 230
             PYKV+VS
Sbjct:   181 PYKVAVS 187

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

TAIR|locus:2051784 HOL2 "HARMLESS TO OZONE LAYER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 104/159 (65%), Positives = 127/159 (79%)

Query:    72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER 131
             + + GGW+KCWE+G+TPWD G+  P+I+HL  S ALP GR LVPGCG G+DVVAMASPER
Sbjct:    30 VVAEGGWDKCWEDGVTPWDQGRATPLILHLLDSSALPLGRTLVPGCGGGHDVVAMASPER 89

Query:   132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEM 191
             +VVGL+ISD A+ KA E   S P A++ SF+K D FTW P ELFDLIFDY FFCAIEPEM
Sbjct:    90 FVVGLDISDKALNKANETYGSSPKAEYFSFVKEDVFTWRPNELFDLIFDYVFFCAIEPEM 149

Query:   192 RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230
             R AW + + + LKPDGELITLM+P++DH GG PYKV++S
Sbjct:   150 RPAWGKSMHELLKPDGELITLMYPMTDHEGGAPYKVALS 188

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

ASPGD|ASPL0000006893 AN6094 [Emericella nidulans (taxid:162425)]

 Score = 147 (56.8 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
 Identities = 34/84 (40%), Positives = 47/84 (55%)

Query:   161 FLKADFFT--WCPTEL------------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD 206
             FL+ DFFT  W   E             FDL++DYTF CA+ P  R  WA+++ D L+P 
Sbjct:   156 FLQGDFFTDTWIENESTGLDQGRTENGKFDLVYDYTFLCALHPAQRTRWAERMADLLRPG 215

Query:   207 GELITLMFPI-SDH-VGGPPYKVS 228
             G L+ L FP+  D  + GPP+ V+
Sbjct:   216 GLLVCLEFPMYKDPALPGPPWGVN 239

GO:0005737 "cytoplasm" evidence=IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q9KSN0 tpm "Thiopurine S-methyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 49/169 (28%), Positives = 80/169 (47%)

Query:    78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG--RALVPGCGTGYDVVAMASPERYVVG 135
             W   W      + +    P+++    S   PK   + LVP CG   D++ +A+    V G
Sbjct:     7 WHNKWAANQIGFHLEDVNPLLIRFW-SDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQG 65

Query:   136 LEISDIAIKK--AEELSSSLP---NAKF-------VSFLKADFFTWCPTELFDLIFDYTF 183
             +E+S IA++   AE   +      NA+        ++    DFFT  P E  DL++D   
Sbjct:    66 VELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAA 124

Query:   184 FCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDHVGGPPYKVSVSE 231
               A+  EMRA +AQ++   LKP G ++ + M  +   + GPP+ V  +E
Sbjct:   125 LVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAE 173

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

TIGR_CMR|VC_1226 VC_1226 "thiopurine methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 49/169 (28%), Positives = 80/169 (47%)

Query:    78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG--RALVPGCGTGYDVVAMASPERYVVG 135
             W   W      + +    P+++    S   PK   + LVP CG   D++ +A+    V G
Sbjct:     7 WHNKWAANQIGFHLEDVNPLLIRFW-SDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQG 65

Query:   136 LEISDIAIKK--AEELSSSLP---NAKF-------VSFLKADFFTWCPTELFDLIFDYTF 183
             +E+S IA++   AE   +      NA+        ++    DFFT  P E  DL++D   
Sbjct:    66 VELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAA 124

Query:   184 FCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDHVGGPPYKVSVSE 231
               A+  EMRA +AQ++   LKP G ++ + M  +   + GPP+ V  +E
Sbjct:   125 LVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSVPEAE 173

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

UNIPROTKB|O06426 MT0586 "Uncharacterized protein Rv0560c/MT0586" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 140 (54.3 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 51/166 (30%), Positives = 70/166 (42%)

Query:    70 MHIESS-GGWEKCWEEGLTP-WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA 127
             +  ES+  G    + EG+ P W IG+P P +  L   G   +G  L  GCG     +A+A
Sbjct:    23 LEFESAYRGESVAFGEGVRPPWSIGEPQPELAALIVQGKF-RGDVLDVGCGEAAISLALA 81

Query:   128 SPERYVVGLEISDIAIKKA--EELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
                   VGL++S  A++ A  E     L NA F     A  FT      FD I D T F 
Sbjct:    82 ERGHTTVGLDLSPAAVELARHEAAKRGLANASF-EVADASSFTGYDGR-FDTIVDSTLFH 139

Query:   186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
             ++  E R  + Q I     P      L+F  +    GP   V+  E
Sbjct:   140 SMPVESREGYLQSIVRAAAPGASYFVLVFDRAAIPEGPINAVTEDE 185

GO:0001666 "response to hypoxia" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010106 "cellular response to iron ion starvation" evidence=IEP

TIGR_CMR|SO_0582 SO_0582 "thiopurine S-methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 118 (46.6 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 45/174 (25%), Positives = 81/174 (46%)

Query:    76 GGWEKCWEE---GLTPWDIGQPAPIIVHLHQSGALPK-GRALVPGCGTGYDVVAMASPER 131
             G W + W++   G    D+  P  ++ + HQ  ALP   +  VP CG   D+  +A    
Sbjct:     4 GFWHEKWQQQQIGFHQQDVN-PF-LVTYWHQL-ALPADAKIFVPLCGKSLDMCFLAEQGH 60

Query:   132 YVVGLEISDIAIKKAEELSSSLP------------NAKFVSFLKADFFTWCPTELFDL-- 177
              V+G E++++A+++     + LP              + +S  + D FT   +   ++  
Sbjct:    61 QVIGCELNELAVQQFFS-DNQLPMQQSAEGEHQHYQTEQISLYQGDIFTLPQSITAEVSG 119

Query:   178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE---LITLMFPISDHVGGPPYKVS 228
              +D     A    MRA +A+++  +L P G    L+TL +P  + + GPP+ VS
Sbjct:   120 FYDRAALIAWPESMRAQYAKQLA-YLLPQGSVGLLVTLDYP-QEVLSGPPFAVS 171

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

UNIPROTKB|O69667 Rv3699 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 112 (44.5 bits), Expect = 0.00019, P = 0.00019
 Identities = 35/136 (25%), Positives = 60/136 (44%)

Query:    84 EGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAI 143
             EG  PW+IG+P P +  L  +G + +   L  GCG     +A+A+    VVG++++  A+
Sbjct:    19 EGPPPWNIGEPQPELATLIAAGKV-RSDVLDAGCGYAELSLALAADGYTVVGIDLTPTAV 77

Query:   144 KKAEELSSSLPNAKFVSFLKADF--FTWCPTEL---FDLIFDYTFFCAIEPEMRAAWAQK 198
               A + +         SF++AD   F   P      F  + D T F ++  + R  +   
Sbjct:    78 AAATKAAEER-GLTTASFVQADITEFAAYPAGSAGRFSTVIDSTLFHSLPVDSRDRYLSS 136

Query:   199 IKDFLKPDGELITLMF 214
             +     P      L+F
Sbjct:   137 VHRAAAPGASYYVLVF 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       231   0.00084  113 3  11 22  0.40    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.78u 0.21s 19.99t   Elapsed:  00:00:01
  Total cpu time:  19.78u 0.21s 19.99t   Elapsed:  00:00:01
  Start:  Sat May 11 10:05:15 2013   End:  Sat May 11 10:05:16 2013

GO:0005618 "cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP12	HOL1_ARATH	2, ., 1, ., 1, ., n, 4	0.6236	0.7878	0.7398	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.67	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.921
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam05724	203	pfam05724, TPMT, Thiopurine S-methyltransferase (T	2e-48
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-11
TIGR03840	213	TIGR03840, TMPT_Se_Te, thiopurine S-methyltransfer	3e-11
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-10
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-08
PRK13255	218	PRK13255, PRK13255, thiopurine S-methyltransferase	3e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	4e-08
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	3e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	5e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	2e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-04
COG4106	257	COG4106, Tam, Trans-aconitate methyltransferase [G	0.001
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.001
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.003
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	0.004
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.004

>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT)

 Score =  157 bits (399), Expect = 2e-48
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 17/160 (10%)

Query: 88  PWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA 146
           P+      P++V H       P  R LVP CG   D+V +A    +VVG+EIS++A++K 
Sbjct: 1   PFHQEGVNPLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKF 60

Query: 147 EELSSSLPNAKFVSFLK-----------ADFFTWCPTEL--FDLIFDYTFFCAIEPEMRA 193
              +   P    +S  K            DFFT    +L  FDLI+D    CA+ PEMR 
Sbjct: 61  FAEAGLSPPITELSGFKEYRAGGIELLCGDFFTLPREDLGKFDLIYDRAALCALPPEMRP 120

Query: 194 AWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
            +A+++ + L P G   LITL +P +DH  GPP+ V  +E
Sbjct: 121 RYAKQMYELLPPGGRGLLITLDYPQTDHE-GPPFSVPAAE 159

This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyzes S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           R L  GCGTG   +A+AS P   V G++IS +A++ A +  ++   A  V  LK D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA-AAALLADNVEVLKGDAEEL 59

Query: 170 --CPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
                E FD+I  D         E  A + ++ +  LKP G L+ 
Sbjct: 60  PPEADESFDVIISDPPLHH--LVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|213871 TIGR03840, TMPT_Se_Te, thiopurine S-methyltransferase, Se/Te detoxification family

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W + W+EG   +   +  P++V H    G     R  VP CG   D+  +A     V+G+
Sbjct: 3   WHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGV 62

Query: 137 EISDIAIKK--AE-ELS---SSLPNAKF-----VSFLKADFFTWCPTEL--FDLIFDYTF 183
           E+S+IA+++  AE  L+   +            +     DFF     +L   D ++D   
Sbjct: 63  ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAA 122

Query: 184 FCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
             A+  EMR  +A  +   L P     LITL +     + GPP+ VS +E
Sbjct: 123 LIALPEEMRQRYAAHLLALLPPGARQLLITLDYD-QSEMAGPPFSVSPAE 171

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. Length = 213

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 116 GCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169
           GCGTGY    +A    P   VVG++IS+ AI+KA+E +  L   + V F++ D       
Sbjct: 11  GCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFIQGDIEELPQL 69

Query: 170 -CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                 FD++        + P+      ++I   LKP G LI  
Sbjct: 70  QLEDNSFDVVISNEVLNHL-PDPDKVL-EEIIRVLKPGGVLIVS 111

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 116 GCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCP 171
           GCGTG  +  +  A P     G++IS  A++ A E  ++L   +A  V     D      
Sbjct: 4   GCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID-LD 62

Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
              FD++        +      A  + ++  LKP G L
Sbjct: 63  PGSFDVVVASNVLHHLAD--PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|183921 PRK13255, PRK13255, thiopurine S-methyltransferase; Reviewed

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 17/170 (10%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W + W E    +   +  P++  +          R LVP CG   D++ +A     V+G+
Sbjct: 6   WHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGV 65

Query: 137 EISDIAIKK--AE-ELSSSLP-NAKF-------VSFLKADFFTWCPTEL--FDLIFDYTF 183
           E+S++A+++  AE  L+     + +F       ++    DFF     +L   D ++D   
Sbjct: 66  ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAA 125

Query: 184 FCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
             A+  EMR  + Q++   L       L+TL +P  + + GPP+ VS  E
Sbjct: 126 LIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE-LAGPPFSVSDEE 174

Length = 218

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 116 GCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE- 173
           GCGTG  + A+A +    V G++IS  A++ A+E          V F+ AD       E 
Sbjct: 5   GCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLPFEEG 62

Query: 174 LFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
            FDL+         + P+   A  ++    L+P G
Sbjct: 63  SFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 110 GRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
            R L PG G+G      A A P+  VVG+E+   A   A    +    A  V  +  D  
Sbjct: 2   DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61

Query: 168 T--WCPTELFDLIF---DYTFFCAIEPEMRAAWAQ---KIKDFLKPDG 207
                P   FDL+     Y        + R  + +        LKP G
Sbjct: 62  ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGG 109

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
           P  R L  GCGTG   + +A   P   V G+++S   ++ A E +      + ++F++ D
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59

Query: 166 FFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                   E FD +F       +   + A         LKP G L+
Sbjct: 60  APDALDLLEGFDAVFIGGGGGDLLELLDALA-----SLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 17/100 (17%)

Query: 116 GCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWC 170
           GCGTG    A+A      V G+++S   +  A +            F+  D     F   
Sbjct: 4   GCGTGLLAEALARRGGARVTGVDLSPEMLALARK-------RAPRKFVVGDAEDLPF--- 53

Query: 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           P E FD++        + P+   A  ++I   LKP G+L+
Sbjct: 54  PDESFDVVVSSLVLHHL-PDPERAL-REIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 27/121 (22%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173
           G G+G   +A+A   P+  V  ++IS  A+  A + ++ L     V FL++D+F   P  
Sbjct: 95  GTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-GLDNVEFLQSDWFEPLPGG 153

Query: 174 LFDLI------FDYTFFCAIEPEMR------------------AAWAQKIKDFLKPDGEL 209
            FDLI              ++PE+R                       +    LKP G L
Sbjct: 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213

Query: 210 I 210
           +
Sbjct: 214 L 214

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP-NAKFVSFLKADF 166
              R L  G G+G   +  A   + VVG++I+  A++ A+  +         V  +++D 
Sbjct: 23  KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL 82

Query: 167 FTWCPTELFDLI 178
           F     + FD+I
Sbjct: 83  FEPFRGDKFDVI 94

Length = 188

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.4 bits (94), Expect = 2e-04
 Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 4/127 (3%)

Query: 87  TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA--MASPERYVVGLEISDIAIK 144
                     ++V             L  GCGTG   +   +     YVVG+++S   + 
Sbjct: 27  LLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLA 86

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF-CAIEPEMRAAWAQKIKDFL 203
            A   +        V F+ AD             FD       +     A   +++   L
Sbjct: 87  LARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVL 145

Query: 204 KPDGELI 210
           KP G L+
Sbjct: 146 KPGGRLV 152

Length = 257

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 20/115 (17%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           ++        P GR L  GCGTG  +  +      V G++ S  A+       +  P   
Sbjct: 12  LLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDP--- 68

Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210
                            +DLI   T F  +E  P+  A   Q++++ LKP G L+
Sbjct: 69  -----------AVLAGKYDLI---TAFEVLEHLPDPPALL-QQLRELLKPGGVLL 108

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173
           GCG G     +A   P+  + G++ S   + KA +    LP+A   +F +AD  TW P +
Sbjct: 38  GCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---LPDA---TFEEADLRTWKPEQ 91

Query: 174 LFDLIF 179
             DL+F
Sbjct: 92  PTDLLF 97

Length = 257

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 35/132 (26%)

Query: 106 ALPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSF 161
              KGR L  G G G   + +     + +  +VG+EI + A + A+   +  P  + +  
Sbjct: 42  VPKKGRILDLGAGNG--ALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99

Query: 162 LKADFFTWCPT---ELFDLI------FD---------------YTFFCAIEPEMRAAWAQ 197
           ++AD   +        FDLI      F                +     +E        +
Sbjct: 100 IEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLE-----DLIR 154

Query: 198 KIKDFLKPDGEL 209
                LKP G L
Sbjct: 155 AAAKLLKPGGRL 166

Length = 248

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
               G+ L  GCG G    A+A  SP+  V  ++I+  A++ A   + +    +      
Sbjct: 29  KPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARA-NLAANGLENGEVFW 87

Query: 164 ADFFTWCPTELFDLIFDYT---FFCAIEPEMRAAWA--QKIKDFLKPDGEL 209
           +D ++      FDLI   +   F      +   A          LKP GEL
Sbjct: 88  SDLYSAVEPGKFDLII--SNPPFHAGKATDYDVAQRFIAGAARHLKPGGEL 136

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 37.4 bits (88), Expect = 0.004
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 13/70 (18%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF-----VSFLKADFFT 168
           G G+G   +A+A   P+  V  ++IS  A+  A        NAK      V FL+ D+F 
Sbjct: 116 GTGSGAIALALAKERPDAEVTAVDISPEALAVARR------NAKHGLGARVEFLQGDWFE 169

Query: 169 WCPTELFDLI 178
             P   FDLI
Sbjct: 170 PLPGGRFDLI 179

Length = 275

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 108 PKGRALVPGCGTGYDVVAMA---SPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVS 160
           P  R L  GCG G D   +A    PE  VVG++ S     +A ++A  L    PN +FV 
Sbjct: 19  PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVR 75

Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.94
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.93
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.92
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.92
PRK11207	197	tellurite resistance protein TehB; Provisional	99.88
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.85
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.84
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.83
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.83
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.82
PLN02244	340	tocopherol O-methyltransferase	99.81
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.8
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.79
PRK12335	287	tellurite resistance protein TehB; Provisional	99.79
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.78
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.78
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.78
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.78
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.77
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.76
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.76
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.74
PLN02336	475	phosphoethanolamine N-methyltransferase	99.74
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.73
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.73
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.72
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.71
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.71
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.7
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.7
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.69
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.69
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.69
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.68
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.68
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.67
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.67
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.67
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.67
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.67
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.66
PLN03075	296	nicotianamine synthase; Provisional	99.66
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.66
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.66
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.65
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.65
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.65
KOG2361	264	consensus Predicted methyltransferase [General fun	99.64
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.64
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.64
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.63
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.63
PLN02490	340	MPBQ/MSBQ methyltransferase	99.63
PLN02336	475	phosphoethanolamine N-methyltransferase	99.63
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.62
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.62
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.61
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.61
PRK05785	226	hypothetical protein; Provisional	99.61
PRK06922	677	hypothetical protein; Provisional	99.61
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.61
KOG1271	227	consensus Methyltransferases [General function pre	99.6
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.59
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.59
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.59
PRK06202	232	hypothetical protein; Provisional	99.58
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.58
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.58
PRK08317	241	hypothetical protein; Provisional	99.57
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.56
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.56
PRK14967	223	putative methyltransferase; Provisional	99.56
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.56
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.56
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.56
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.56
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.56
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.56
KOG4300	252	consensus Predicted methyltransferase [General fun	99.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.55
PRK14968	188	putative methyltransferase; Provisional	99.55
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.55
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.54
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.54
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.54
TIGR03438	301	probable methyltransferase. This model represents	99.53
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.53
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.53
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.49
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.48
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.48
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.47
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.47
PRK04266	226	fibrillarin; Provisional	99.46
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.45
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.45
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.45
PHA03411	279	putative methyltransferase; Provisional	99.44
PRK04457	262	spermidine synthase; Provisional	99.44
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.44
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.43
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.43
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.42
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.42
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.42
PRK07402	196	precorrin-6B methylase; Provisional	99.41
COG2890	280	HemK Methylase of polypeptide chain release factor	99.4
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.4
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.39
PRK00811	283	spermidine synthase; Provisional	99.38
PTZ00146	293	fibrillarin; Provisional	99.38
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.37
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.36
PLN02476	278	O-methyltransferase	99.35
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.35
KOG3010	261	consensus Methyltransferase [General function pred	99.34
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.34
COG4122	219	Predicted O-methyltransferase [General function pr	99.33
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.32
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.32
TIGR00438	188	rrmJ cell division protein FtsJ.	99.32
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.32
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.31
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.31
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.3
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.29
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.28
KOG2899	288	consensus Predicted methyltransferase [General fun	99.27
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.27
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.26
PHA03412	241	putative methyltransferase; Provisional	99.26
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.26
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.25
PLN02366	308	spermidine synthase	99.25
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.25
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.24
PLN02672	1082	methionine S-methyltransferase	99.24
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.24
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.24
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.23
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.21
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.21
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.2
PRK01581	374	speE spermidine synthase; Validated	99.2
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.2
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.19
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.19
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.19
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.18
KOG2904	328	consensus Predicted methyltransferase [General fun	99.18
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.15
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.15
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.14
PRK03612	521	spermidine synthase; Provisional	99.14
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.13
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.12
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.11
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.1
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.09
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.09
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.09
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.08
PRK04148	134	hypothetical protein; Provisional	99.05
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.05
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.05
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.03
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.02
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.0
COG2520	341	Predicted methyltransferase [General function pred	98.99
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.99
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.97
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.97
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.96
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.96
PLN02823	336	spermine synthase	98.95
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.94
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.94
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.94
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.93
KOG2730	263	consensus Methylase [General function prediction o	98.93
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.93
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.91
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.91
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.88
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.85
COG2521	287	Predicted archaeal methyltransferase [General func	98.85
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.85
KOG2940	325	consensus Predicted methyltransferase [General fun	98.8
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.79
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.78
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.78
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.78
PRK00536	262	speE spermidine synthase; Provisional	98.76
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.73
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.71
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.71
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.71
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.69
KOG1331	293	consensus Predicted methyltransferase [General fun	98.64
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.63
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.62
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.62
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.61
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.59
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.57
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.55
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.55
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.54
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.53
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.53
COG3897	218	Predicted methyltransferase [General function pred	98.52
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.52
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.51
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.5
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.49
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.49
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.48
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.46
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.44
PF13679	141	Methyltransf_32: Methyltransferase domain	98.43
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.39
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.38
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.35
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.33
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.32
COG4076	252	Predicted RNA methylase [General function predicti	98.32
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.31
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.27
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.26
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.24
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.2
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.18
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.18
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.11
KOG4058	199	consensus Uncharacterized conserved protein [Funct	98.1
KOG3115	249	consensus Methyltransferase-like protein [General	98.09
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.09
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.0
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.99
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.96
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.94
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.93
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.89
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.85
PRK10742	250	putative methyltransferase; Provisional	97.83
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.74
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.72
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.71
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.68
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.67
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.66
COG4798	238	Predicted methyltransferase [General function pred	97.58
PRK11524	284	putative methyltransferase; Provisional	97.55
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.54
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.48
PRK13699	227	putative methylase; Provisional	97.44
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.39
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.36
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.36
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.35
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.34
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.34
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.33
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.14
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.13
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.12
COG0286	489	HsdM Type I restriction-modification system methyl	97.06
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.02
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.98
KOG1227	351	consensus Putative methyltransferase [General func	96.95
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.92
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.9
PHA01634	156	hypothetical protein	96.9
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.87
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.82
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.8
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.71
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.7
COG1565	370	Uncharacterized conserved protein [Function unknow	96.67
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.65
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.47
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.46
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.44
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.36
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.31
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.2
COG4301	321	Uncharacterized conserved protein [Function unknow	96.2
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	96.09
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.09
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.04
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.02
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.9
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.83
KOG2920	282	consensus Predicted methyltransferase [General fun	95.83
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.82
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.81
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.75
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	95.71
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.67
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.61
COG1568	354	Predicted methyltransferases [General function pre	95.56
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.47
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.44
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.43
COG3315	297	O-Methyltransferase involved in polyketide biosynt	95.29
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.22
KOG2912	419	consensus Predicted DNA methylase [Function unknow	95.06
PTZ00357	1072	methyltransferase; Provisional	95.04
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.02
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.99
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.97
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.95
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.89
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.86
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.84
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.78
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.68
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.59
PRK05225	487	ketol-acid reductoisomerase; Validated	94.49
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.45
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	94.44
KOG3924	419	consensus Putative protein methyltransferase invol	94.37
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.35
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.34
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.16
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.11
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.95
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.73
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.55
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.52
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.51
PRK11524	284	putative methyltransferase; Provisional	93.5
PRK05854	313	short chain dehydrogenase; Provisional	93.47
COG0863	302	DNA modification methylase [DNA replication, recom	93.45
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.44
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	93.35
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.12
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	93.11
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.09
PLN02740	381	Alcohol dehydrogenase-like	92.87
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	92.64
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.59
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.56
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	92.37
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.21
PRK08324	681	short chain dehydrogenase; Validated	92.2
PRK07417	279	arogenate dehydrogenase; Reviewed	92.17
PRK07814	263	short chain dehydrogenase; Provisional	92.1
PRK07109	334	short chain dehydrogenase; Provisional	91.93
PRK07576	264	short chain dehydrogenase; Provisional	91.89
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.84
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	91.82
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	91.78
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.74
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.66
PRK08267	260	short chain dehydrogenase; Provisional	91.62
PRK08265	261	short chain dehydrogenase; Provisional	91.57
PRK06701	290	short chain dehydrogenase; Provisional	91.54
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.45
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.44
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	91.42
PRK06139	330	short chain dehydrogenase; Provisional	91.41
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	91.33
PRK13699	227	putative methylase; Provisional	91.33
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	91.28
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.26
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	91.13
PRK05872	296	short chain dehydrogenase; Provisional	91.11
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.09
PRK05875	276	short chain dehydrogenase; Provisional	91.07
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.93
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.82
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.81
PRK07806	248	short chain dehydrogenase; Provisional	90.7
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	90.65
COG2933	358	Predicted SAM-dependent methyltransferase [General	90.6
PRK12939	250	short chain dehydrogenase; Provisional	90.58
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.46
PLN02494	477	adenosylhomocysteinase	90.4
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.39
PLN02827	378	Alcohol dehydrogenase-like	90.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.29
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.21
PRK08085	254	gluconate 5-dehydrogenase; Provisional	90.1
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	89.97
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.92
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	89.85
PRK09496	453	trkA potassium transporter peripheral membrane com	89.83
PLN02586	360	probable cinnamyl alcohol dehydrogenase	89.81
PRK07985	294	oxidoreductase; Provisional	89.6
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	89.6
PRK06125	259	short chain dehydrogenase; Provisional	89.55
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.52
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	89.5
PRK10458	467	DNA cytosine methylase; Provisional	89.37
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.36
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	89.34
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	89.22
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	89.06
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	89.05
PRK10669	558	putative cation:proton antiport protein; Provision	88.99
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	88.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	88.97
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.96
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.92
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	88.81
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.78
PRK07063	260	short chain dehydrogenase; Provisional	88.74
PRK13403	335	ketol-acid reductoisomerase; Provisional	88.7
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	88.52
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	88.52
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	88.5
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	88.48
PRK06124	256	gluconate 5-dehydrogenase; Provisional	88.43
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.34
KOG1208	314	consensus Dehydrogenases with different specificit	88.27
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	88.27
PRK06500	249	short chain dehydrogenase; Provisional	88.25
PRK09496	453	trkA potassium transporter peripheral membrane com	88.12
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	88.08
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.01
COG2910	211	Putative NADH-flavin reductase [General function p	88.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	87.92
PRK06940	275	short chain dehydrogenase; Provisional	87.87
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	87.83
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.82
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.75
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	87.74
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.73
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	87.68
PRK12744	257	short chain dehydrogenase; Provisional	87.64
PTZ00075	476	Adenosylhomocysteinase; Provisional	87.6
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	87.41
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	87.4
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	87.26
PLN02514	357	cinnamyl-alcohol dehydrogenase	87.22
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	87.0
PRK06128	300	oxidoreductase; Provisional	87.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	86.87
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.77
PRK07035	252	short chain dehydrogenase; Provisional	86.66
PRK05867	253	short chain dehydrogenase; Provisional	86.63
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.47
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	86.46
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	86.37
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	86.21
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	86.07
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	86.03
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	85.99
PRK12743	256	oxidoreductase; Provisional	85.94
PRK06172	253	short chain dehydrogenase; Provisional	85.93
PRK07890	258	short chain dehydrogenase; Provisional	85.84
PRK06484	520	short chain dehydrogenase; Validated	85.79
PRK07062	265	short chain dehydrogenase; Provisional	85.78
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	85.77
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.73
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.72
COG4017	254	Uncharacterized protein conserved in archaea [Func	85.67
PLN02178	375	cinnamyl-alcohol dehydrogenase	85.57
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.52
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	85.52
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	85.49
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	85.46
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	85.44
PRK08339	263	short chain dehydrogenase; Provisional	85.28
PRK06484	520	short chain dehydrogenase; Validated	85.2
PRK06182	273	short chain dehydrogenase; Validated	85.0
PRK06914	280	short chain dehydrogenase; Provisional	84.97
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	84.93
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	84.9
PRK11730	715	fadB multifunctional fatty acid oxidation complex	84.88
PRK07677	252	short chain dehydrogenase; Provisional	84.84
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	84.81
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	84.76
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	84.73
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	84.51
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	84.47
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	84.46
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	84.4
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	84.26
PRK09072	263	short chain dehydrogenase; Provisional	84.25
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	84.14
PRK12742	237	oxidoreductase; Provisional	83.92
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	83.84
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.81
PRK08507	275	prephenate dehydrogenase; Validated	83.81
PRK09186	256	flagellin modification protein A; Provisional	83.8
PRK05855	582	short chain dehydrogenase; Validated	83.78
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	83.73
PRK10083	339	putative oxidoreductase; Provisional	83.7
COG2130	340	Putative NADP-dependent oxidoreductases [General f	83.66

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.94  E-value=9.7e-26  Score=176.41  Aligned_cols=159  Identities=19%  Similarity=0.369  Sum_probs=137.1

Q ss_pred             ccccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026903           73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus        73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      ...++|++.|+....+|+...+++.+.+++..... ++.+||++|||.|..+..|++.|+.|+|+|+|+.+++.+.+...
T Consensus         7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~   86 (226)
T PRK13256          7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNT   86 (226)
T ss_pred             CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcC
Confidence            45678999999999999999999999888887654 45799999999999999999999999999999999999866321


Q ss_pred             c-----------CCCCCceEEEEccCCCCCC----CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          152 S-----------LPNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       152 ~-----------~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .           .....+++++++|++++.+    .+.||+|+...++++++++.+.++.+.+.++|+|||.++++.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256         87 INYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             CCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence            0           0112479999999999643    258999999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCCC
Q 026903          217 SDHVGGPPYKVSVSE  231 (231)
Q Consensus       217 ~~~~~~~~~~~~~~~  231 (231)
                      +...+||||.|+++|
T Consensus       167 ~~~~~GPPf~v~~~e  181 (226)
T PRK13256        167 DKKSQTPPYSVTQAE  181 (226)
T ss_pred             CCCCCCCCCcCCHHH
Confidence            666799999998764

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.93  E-value=3.5e-25  Score=173.35  Aligned_cols=156  Identities=25%  Similarity=0.466  Sum_probs=129.8

Q ss_pred             cchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-
Q 026903           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-  153 (231)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-  153 (231)
                      ++|++.|.....+|+...+++.+.+++..... ++.+|||+|||.|+++..|+++|..|+|+|+|+.+++.+....... 
T Consensus         1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~   80 (213)
T TIGR03840         1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTP   80 (213)
T ss_pred             ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCc
Confidence            47999999999999989999999998886533 5589999999999999999999999999999999999864422110 


Q ss_pred             ----------CCCCceEEEEccCCCCCC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC-CCC
Q 026903          154 ----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHV  220 (231)
Q Consensus       154 ----------~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~  220 (231)
                                ....+++++++|++++..  .++||.|+...+++|++++.+..+++.+.++|||||++++.+|... .+.
T Consensus        81 ~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~  160 (213)
T TIGR03840        81 TVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM  160 (213)
T ss_pred             ceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC
Confidence                      012469999999999553  3579999999999999999999999999999999999888777553 445


Q ss_pred             CCCCCCCCCCC
Q 026903          221 GGPPYKVSVSE  231 (231)
Q Consensus       221 ~~~~~~~~~~~  231 (231)
                      .||||.++.+|
T Consensus       161 ~gpp~~~~~~e  171 (213)
T TIGR03840       161 AGPPFSVSPAE  171 (213)
T ss_pred             CCcCCCCCHHH
Confidence            78999887654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.92  E-value=3.6e-24  Score=168.19  Aligned_cols=157  Identities=24%  Similarity=0.420  Sum_probs=128.4

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      .++|++.|.....+|+...+++.+.+++..... ++.+|||+|||.|..+..|+++|.+|+|+|+|+.+++.+.......
T Consensus         3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~   82 (218)
T PRK13255          3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT   82 (218)
T ss_pred             HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence            468999999999999989999999998875433 4579999999999999999999999999999999999874321110


Q ss_pred             -----------CCCCceEEEEccCCCCCCC--CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc-CCCC
Q 026903          154 -----------PNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDH  219 (231)
Q Consensus       154 -----------~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~  219 (231)
                                 ....+|++.++|++++.+.  ..||+|+...+++|++++.+.++++.+.++|+|||++++.++. ....
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~  162 (218)
T PRK13255         83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE  162 (218)
T ss_pred             ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence                       0135799999999996433  5899999999999999999999999999999999875554432 2344


Q ss_pred             CCCCCCCCCCCC
Q 026903          220 VGGPPYKVSVSE  231 (231)
Q Consensus       220 ~~~~~~~~~~~~  231 (231)
                      ..||||.++.+|
T Consensus       163 ~~gPp~~~~~~e  174 (218)
T PRK13255        163 LAGPPFSVSDEE  174 (218)
T ss_pred             CCCCCCCCCHHH
Confidence            688999887654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.92  E-value=7.8e-25  Score=171.61  Aligned_cols=156  Identities=46%  Similarity=0.846  Sum_probs=120.4

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS-  152 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-  152 (231)
                      .++|++.|.....+|+...+++.+.+++..... ++.+||.+|||.|..+..|++.|.+|+|+|+|+.+++.+.+.... 
T Consensus         3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~   82 (218)
T PF05724_consen    3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE   82 (218)
T ss_dssp             HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence            468999999999999999999999999998544 346999999999999999999999999999999999998442211 


Q ss_pred             -C----C-----CCCceEEEEccCCCCCCCC--ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE--EEEEEccCCC
Q 026903          153 -L----P-----NAKFVSFLKADFFTWCPTE--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISD  218 (231)
Q Consensus       153 -~----~-----~~~~i~~~~~d~~~~~~~~--~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~--l~~~~~~~~~  218 (231)
                       .    .     ...+|++.++|++++.+..  +||+|+...+++.++++.+.++.+.+.++|+|||.  |+...|....
T Consensus        83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~  162 (218)
T PF05724_consen   83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE  162 (218)
T ss_dssp             EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC
T ss_pred             CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC
Confidence             0    0     1246899999999965443  79999999999999999999999999999999999  5556666554


Q ss_pred             CCCCCCCCCCCCC
Q 026903          219 HVGGPPYKVSVSE  231 (231)
Q Consensus       219 ~~~~~~~~~~~~~  231 (231)
                      . .||||.++++|
T Consensus       163 ~-~GPPf~v~~~e  174 (218)
T PF05724_consen  163 M-EGPPFSVTEEE  174 (218)
T ss_dssp             S-SSSS----HHH
T ss_pred             C-CCcCCCCCHHH
Confidence            4 59999998754

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.88  E-value=1.1e-21  Score=152.51  Aligned_cols=138  Identities=15%  Similarity=0.236  Sum_probs=110.7

Q ss_pred             CCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC
Q 026903           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (231)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  170 (231)
                      ...+.+.+.+.+.  ..++.+|||+|||+|.++..|++.|.+|+++|+|+.+++.++++....++ .++++...|+.+..
T Consensus        15 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~   91 (197)
T PRK11207         15 LTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT   91 (197)
T ss_pred             CCCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC
Confidence            3455777776665  34568999999999999999999999999999999999999988766554 35889999988754


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE-EEccCCCC--CCCCCCCCCCCC
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH--VGGPPYKVSVSE  231 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~-~~~~~~~~--~~~~~~~~~~~~  231 (231)
                      ..++||+|++..+++|++++.+..+++++.++|+|||++++ ..+..++.  ..||||..+.+|
T Consensus        92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~e  155 (197)
T PRK11207         92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE  155 (197)
T ss_pred             cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHH
Confidence            45679999999999999888899999999999999999655 44444322  357788766543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.85  E-value=2.1e-20  Score=132.17  Aligned_cols=106  Identities=32%  Similarity=0.461  Sum_probs=91.6

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-CCCCCCCceeEEEeCC-c
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~fD~i~~~~-~  183 (231)
                      |+.+|||+|||+|..+..+++  ++.+|+++|+|+++++.++++.......++++++++|+ ......+.||+|++.. .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            468999999999999999999  89999999999999999999996666668999999999 4444456799999999 5


Q ss_pred             ccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++++.. +...++++.+.+.|+|||++++.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            554433 677899999999999999998865

...

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.84  E-value=6.4e-20  Score=139.95  Aligned_cols=132  Identities=23%  Similarity=0.310  Sum_probs=100.6

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~  154 (231)
                      .++|.+.|.....       .+.+...++  ..+++++||+|||.|+++.+|++.|..|+++|.|+.+++.+++.....+
T Consensus         6 ~~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~   76 (192)
T PF03848_consen    6 EDYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG   76 (192)
T ss_dssp             TTHHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC
Confidence            4566666644332       333444443  4467899999999999999999999999999999999999988877665


Q ss_pred             CCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       155 ~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +.  |+....|+.+...++.||+|++..+++|++++.++.+++.+.+.++|||++++.++-..
T Consensus        77 l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~  137 (192)
T PF03848_consen   77 LD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET  137 (192)
T ss_dssp             -T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred             ce--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence            43  89999999886556789999999999999999999999999999999999888776433

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.83  E-value=1.5e-19  Score=140.18  Aligned_cols=117  Identities=13%  Similarity=0.155  Sum_probs=95.0

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ...+...+.  ..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++....++  ++.+...|+.....+.+
T Consensus        19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~   94 (195)
T TIGR00477        19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED   94 (195)
T ss_pred             hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence            334444443  33468999999999999999999999999999999999999987765543  36777788765433468


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ||+|++..+++|++++....+++.+.++|+|||++++..+-
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~  135 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM  135 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            99999999999998888899999999999999997666553

Part of a tellurite-reducing operon tehA and tehB

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.83  E-value=7.5e-20  Score=143.93  Aligned_cols=108  Identities=27%  Similarity=0.316  Sum_probs=98.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      ++.+|||+|||||..+..+++..  .+|+++|+|+.|++.|+++....+... ++|+.+|+++ ++++.+||+|.+.+.+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence            67999999999999999999843  599999999999999999998765544 9999999999 8889999999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      .+++  +..++|+++.|+|||||++++.+++...
T Consensus       130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~  161 (238)
T COG2226         130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD  161 (238)
T ss_pred             hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence            9995  6678999999999999999999998753

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.82  E-value=2e-20  Score=144.89  Aligned_cols=150  Identities=19%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             cCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHH-----cCCCCCCcEEEecCCCchHHHHhcCC
Q 026903           55 NVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ-----SGALPKGRALVPGCGTGYDVVAMASP  129 (231)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vLDiGcG~G~~~~~l~~~  129 (231)
                      ....+..+++.+.++.    ..+|+......  +-+..  ++.-..++.     +..+++.+|||+|||.|.++..||+.
T Consensus         9 ~~~id~~e~~~F~~la----~~wwd~~g~f~--~LH~~--N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~   80 (243)
T COG2227           9 TQNVDYKELDKFEALA----SRWWDPEGEFK--PLHKI--NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL   80 (243)
T ss_pred             cccCCHHHHHHHHHHH----hhhcCCCCcee--eeeee--ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC
Confidence            3455666777776666    55665333221  11211  222222222     22368899999999999999999999


Q ss_pred             CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE
Q 026903          130 ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE  208 (231)
Q Consensus       130 ~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  208 (231)
                      |++|+|+|++++.|+.|+.+..+.++.  +++.+...++.... ++||+|+|..+++|++++  ..+++.|.+++||||.
T Consensus        81 Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp--~~~~~~c~~lvkP~G~  156 (243)
T COG2227          81 GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGI  156 (243)
T ss_pred             CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHccCCH--HHHHHHHHHHcCCCcE
Confidence            999999999999999999998876643  66888887775443 799999999999999755  4599999999999999


Q ss_pred             EEEEEccC
Q 026903          209 LITLMFPI  216 (231)
Q Consensus       209 l~~~~~~~  216 (231)
                      +++.+-..
T Consensus       157 lf~STinr  164 (243)
T COG2227         157 LFLSTINR  164 (243)
T ss_pred             EEEecccc
Confidence            99987554

>PLN02244 tocopherol O-methyltransferase

Probab=99.81  E-value=2.1e-18  Score=144.65  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=94.6

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++++....+..++++|+.+|+.+ ++++++||+|++..+++
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~  197 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE  197 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence            457999999999999999998 4789999999999999999988776666789999999988 55678999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++  +..++++++.++|||||.+++.++..
T Consensus       198 h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        198 HMP--DKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             ccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            995  45689999999999999999988754

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.81  E-value=1.1e-19  Score=144.15  Aligned_cols=110  Identities=25%  Similarity=0.294  Sum_probs=83.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~  181 (231)
                      ..++.+|||+|||+|..+..+++   +..+|+++|+|+.+++.|+++....+.. +|+++++|.++ ++++++||+|++.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~  123 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS  123 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence            45668999999999999999887   3359999999999999999988766543 79999999999 6778899999999


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +.++++++  ..+.++++.++|||||++++.+|+...
T Consensus       124 fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  124 FGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             S-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             hhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            99999854  567999999999999999999987653

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.80  E-value=5.9e-19  Score=142.58  Aligned_cols=117  Identities=17%  Similarity=0.183  Sum_probs=99.3

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~f  175 (231)
                      +..++.....++.+|||+|||+|.++..+++.+.+|+++|+|+++++.|+++....+..++++++++|+.+.  .+.++|
T Consensus        34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            345555544456899999999999999999999999999999999999999988776667899999998773  345789


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+|++..+++|+++.  ..+++++.++|||||+|++..+..
T Consensus       114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECc
Confidence            999999999999543  578999999999999998877654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.80  E-value=7.4e-19  Score=120.18  Aligned_cols=93  Identities=31%  Similarity=0.422  Sum_probs=81.2

Q ss_pred             EEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChH
Q 026903          113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE  190 (231)
Q Consensus       113 LDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~  190 (231)
                      ||+|||+|..+..+++. +.+|+++|+++++++.++++....    ++.+..+|..+ ++++++||+|++..+++|+  +
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence            89999999999999997 889999999999999999988654    46799999999 5677899999999999999  6


Q ss_pred             HHHHHHHHHHhhcCCCcEEEE
Q 026903          191 MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       191 ~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +..++++++.++|||||++++
T Consensus        75 ~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCcCeEEeC
Confidence            778999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.79  E-value=4.6e-19  Score=146.48  Aligned_cols=107  Identities=16%  Similarity=0.203  Sum_probs=92.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA  186 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~~  186 (231)
                      ++.+|||||||+|.++..+++.|.+|+|+|+++++++.|+++........+++++++|+.+. ...++||+|++..+++|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            45699999999999999999999999999999999999998765443335799999998873 45578999999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++  ...+++++.++|||||.+++.+...
T Consensus       211 v~d--~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        211 VAN--PAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             cCC--HHHHHHHHHHHcCCCcEEEEEECCc
Confidence            964  3689999999999999999887644

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.79  E-value=4.4e-18  Score=139.68  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=97.2

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ...+...+.  ..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++....++  ++++...|+.....+++
T Consensus       109 ~~~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~  184 (287)
T PRK12335        109 HSEVLEAVQ--TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE  184 (287)
T ss_pred             cHHHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence            333444443  24457999999999999999999999999999999999999998876654  58888888877544678


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ||+|++..+++|++++....+++++.++|+|||+++++..
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~  224 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA  224 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999999999888889999999999999999766543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.78  E-value=5.8e-18  Score=137.11  Aligned_cols=137  Identities=18%  Similarity=0.222  Sum_probs=108.0

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhcc
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      ...|+..+......   ..-......++....+ ++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.|+++...
T Consensus        21 ~~~~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~   97 (263)
T PTZ00098         21 IKAYEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD   97 (263)
T ss_pred             chhHHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc
Confidence            34566666543321   1113446666766544 458999999999999998876 567999999999999999998654


Q ss_pred             CCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          153 LPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       153 ~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                         .+++.|..+|+.+ ++++++||+|++..+++|++.+++..+++++.++|||||.+++.++...
T Consensus        98 ---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~  160 (263)
T PTZ00098         98 ---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD  160 (263)
T ss_pred             ---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence               2479999999987 5567799999999999998877889999999999999999999888554

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.78  E-value=2.5e-18  Score=129.87  Aligned_cols=128  Identities=23%  Similarity=0.266  Sum_probs=96.4

Q ss_pred             CCCCCCCCCC-cHHHH--HHHH-cCCCCC-CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCce
Q 026903           85 GLTPWDIGQP-APIIV--HLHQ-SGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV  159 (231)
Q Consensus        85 ~~~~~~~~~~-~~~~~--~~~~-~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i  159 (231)
                      ...||..... ++..+  .++. ....+. .++||+|||.|.++..|+.++.+++++|+++.+++.|+++....   ++|
T Consensus        15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V   91 (201)
T PF05401_consen   15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHV   91 (201)
T ss_dssp             SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCe
Confidence            3457886533 33322  2232 123333 69999999999999999999899999999999999999998765   479


Q ss_pred             EEEEccCCCCCCCCceeEEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          160 SFLKADFFTWCPTELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       160 ~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|++.|+.+..|+++||+|+++.+++++++ +++..+++.+...|+|||.|++.++.
T Consensus        92 ~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen   92 EWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             EEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             EEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            999999999888899999999999999975 68899999999999999999998774

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.78  E-value=1e-18  Score=136.37  Aligned_cols=103  Identities=20%  Similarity=0.260  Sum_probs=87.1

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-----ceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ++|||+|||.|.++..|++.|+.|+|+|.++.+++.|+++....+...     ++.+...+++...  +.||.|+|..++
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsevl  168 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEVL  168 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHHH
Confidence            689999999999999999999999999999999999999854433222     3667777777654  349999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+  .+...++..+.++|||||.|++.+-..
T Consensus       169 eHV--~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  169 EHV--KDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HHH--hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            999  566789999999999999999987543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.78  E-value=4.9e-18  Score=136.53  Aligned_cols=113  Identities=18%  Similarity=0.205  Sum_probs=95.7

Q ss_pred             HHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903          101 LHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ++.....++.+|||+|||+|..+..+++    ++.+++++|+|+.+++.|+++....+...+++++++|+.+... ..+|
T Consensus        49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D  127 (247)
T PRK15451         49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENAS  127 (247)
T ss_pred             HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCC
Confidence            3333344568999999999999888765    5679999999999999999998776655679999999988543 3599


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|++..+++|++++.+..+++++.++|+|||.|++.+.
T Consensus       128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            99999999999888889999999999999999999874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.77  E-value=3.8e-18  Score=127.29  Aligned_cols=105  Identities=26%  Similarity=0.367  Sum_probs=90.5

Q ss_pred             CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~  182 (231)
                      .+.+|||+|||+|.++..+++   ++.+++|+|+++++++.|++++...+.. +++|+++|+.+...  .+.||+|++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence            357999999999999999993   4679999999999999999988777655 79999999999442  27899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++|+.  +...+++.+.++|++||.+++..+.
T Consensus        82 ~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFP--DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999985  4468899999999999999988765

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.76  E-value=1.2e-17  Score=135.19  Aligned_cols=110  Identities=21%  Similarity=0.165  Sum_probs=91.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhcc--CCCCCceEEEEccCCC-CCCCCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~--~~~~~~i~~~~~d~~~-~~~~~~fD~i~~  180 (231)
                      .++.+|||+|||+|.++..+++.   ..+|+|+|+|+++++.|+++...  ....++++++++|+.+ ++++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            34579999999999999988863   24899999999999999876531  1123479999999988 566779999999


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      ..+++|++  +..++++++.++|||||++++.++....
T Consensus       152 ~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~  187 (261)
T PLN02233        152 GYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST  187 (261)
T ss_pred             ecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence            99999985  4578999999999999999999987643

>TIGR00740 methyltransferase, putative

Probab=99.76  E-value=2.4e-17  Score=132.00  Aligned_cols=109  Identities=18%  Similarity=0.204  Sum_probs=93.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|..+..+++    ++.+++|+|+|+.+++.|++++...+...+++++++|+.+.... .+|+|++..
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence            4567999999999999988876    46799999999999999999887655445799999999885433 589999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++|+++++...+++++.++|+|||.+++.+...
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            9999988888999999999999999999987543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.74  E-value=5.8e-18  Score=117.60  Aligned_cols=94  Identities=30%  Similarity=0.357  Sum_probs=79.3

Q ss_pred             EEEecCCCchHHHHhcCC---C--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC-Ccc
Q 026903          112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF  184 (231)
Q Consensus       112 vLDiGcG~G~~~~~l~~~---~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~-~~~  184 (231)
                      |||+|||+|..+..+++.   +  .+++++|+|+++++.++++....+.  +++|++.|+.+ ....++||+|++. .++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            799999999999999874   3  7999999999999999998866443  68999999999 3345699999995 559


Q ss_pred             cccChHHHHHHHHHHHhhcCCCc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDG  207 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG  207 (231)
                      +|++++...++++++.++|+|||
T Consensus        79 ~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999998

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.74  E-value=6.5e-17  Score=141.72  Aligned_cols=158  Identities=23%  Similarity=0.221  Sum_probs=118.0

Q ss_pred             cccCCCChhHHHHHHHHhcc-cc----ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHh
Q 026903           53 NDNVIKSHPRVNKLQQLMHI-ES----SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAM  126 (231)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~-~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l  126 (231)
                      +...+++..+.+.+...+.+ ..    -..|..+|.....   ..........+++.... ++.+|||+|||+|..+..+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g~~~~---v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~l  284 (475)
T PLN02336        208 WLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFGEGFV---STGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYM  284 (475)
T ss_pred             EEEEeecCCcchhHHHHhhhhccccccHHHHHHHhCCCCC---CCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHH
Confidence            44556666666777777654 22    3447777765432   11122244556655433 4579999999999999988


Q ss_pred             cC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcC
Q 026903          127 AS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK  204 (231)
Q Consensus       127 ~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~  204 (231)
                      ++ .+.+|+|+|+|+.+++.|+++....  ..+++|+.+|+.+ +++.++||+|+|..+++|++  +..++++++.++|+
T Consensus       285 a~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~Lk  360 (475)
T PLN02336        285 AENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLK  360 (475)
T ss_pred             HHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcC
Confidence            87 5679999999999999999876533  3579999999988 44567899999999999995  45689999999999


Q ss_pred             CCcEEEEEEccCC
Q 026903          205 PDGELITLMFPIS  217 (231)
Q Consensus       205 pgG~l~~~~~~~~  217 (231)
                      |||.|++.++...
T Consensus       361 pgG~l~i~~~~~~  373 (475)
T PLN02336        361 PGGKVLISDYCRS  373 (475)
T ss_pred             CCeEEEEEEeccC
Confidence            9999999887654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.73  E-value=3.7e-17  Score=132.52  Aligned_cols=117  Identities=25%  Similarity=0.266  Sum_probs=94.1

Q ss_pred             HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      +..++++..+ ++.+|||||||.|.++..+++. |.+|+|+.+|++..+.+++++.+.++.+++++...|..+...  +|
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f  128 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF  128 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence            3444555544 5689999999999999999996 899999999999999999999999888899999999987543  89


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |.|++..+++|+.++....+++.+.++|+|||++++..+..
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            99999999999998888999999999999999998765543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.73  E-value=5.6e-17  Score=126.41  Aligned_cols=101  Identities=16%  Similarity=0.271  Sum_probs=87.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|..+..+++.  +.+++|+|+|+++++.|+++..      ++.+.++|+.++.+.++||+|++..+++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLTKGVLI  116 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEECChhh
Confidence            4579999999999999999873  6799999999999999998652      4678899988877778999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++++...++++++.+++  ++.+++.++-.
T Consensus       117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       117 HINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            999888999999999997  56777777633

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00452 methyltransferase, putative

Probab=99.72  E-value=2.8e-16  Score=129.45  Aligned_cols=117  Identities=20%  Similarity=0.231  Sum_probs=89.8

Q ss_pred             HHHHcC-CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus       100 ~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      +++... ..++++|||+|||+|+++..++..|. .|+|+|+|+.++..+...........++.+..+++.+......||+
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~  191 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDT  191 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCE
Confidence            344443 45678999999999999999988776 7999999999987643321111112468888888888554568999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      |+|..+++|++  +...+|++++++|+|||.|++.+...++
T Consensus       192 V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       192 VFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             EEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            99999999985  3467899999999999999988765543

Known examples to date are restricted to the proteobacteria.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.71  E-value=6e-17  Score=130.88  Aligned_cols=106  Identities=19%  Similarity=0.153  Sum_probs=88.5

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      ..++.... .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++.        +++++.+|+.+..+.++|
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f   90 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT   90 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence            44455443 35589999999999999999874  67999999999999999763        378999999886566799


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|+++.+++|+++  ..++++++.++|||||.+++...
T Consensus        91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcC
Confidence            99999999999963  46889999999999999988643

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=1.6e-16  Score=127.33  Aligned_cols=144  Identities=20%  Similarity=0.170  Sum_probs=114.5

Q ss_pred             cccccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHH
Q 026903           72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEEL  149 (231)
Q Consensus        72 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~  149 (231)
                      .....||..+|........ ..-...+..++++..+ |+++|||||||-|.+++.+|+ .|.+|+|+++|++..+.++++
T Consensus        36 d~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r  114 (283)
T COG2230          36 DPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR  114 (283)
T ss_pred             CCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH
Confidence            3344566666655432100 0012234555555544 568999999999999999999 589999999999999999999


Q ss_pred             hccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       150 ~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +...++..+++++..|..++..  .||-|++...++|+..+..+.+++.+.+.|+|||.+++.+.....
T Consensus       115 ~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         115 IAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             HHHcCCCcccEEEecccccccc--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            9988888899999999998763  499999999999999988999999999999999999887765544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.70  E-value=2e-16  Score=131.52  Aligned_cols=110  Identities=25%  Similarity=0.352  Sum_probs=87.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .+++.+|||+|||+|.++..++..|. .|+|+|+|+.++..++......+...+++++.+|+.+....+.||+|+|..++
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl  199 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL  199 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence            35678999999999999999998775 69999999998876543221111124699999999885446789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|..  +...+++++.++|+|||.+++.++..+
T Consensus       200 ~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~  230 (322)
T PRK15068        200 YHRR--SPLDHLKQLKDQLVPGGELVLETLVID  230 (322)
T ss_pred             hccC--CHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence            9984  346789999999999999998775443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.70  E-value=2.1e-16  Score=127.41  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=87.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~  186 (231)
                      +..+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++..      ...++.+|+.+ ++++++||+|+++.++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            34799999999999999998888999999999999999998753      24688899988 455678999999999988


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .+  +...++.++.++|+|||.+++.++...
T Consensus       116 ~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        116 CG--NLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             cC--CHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            74  456889999999999999999887653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.69  E-value=5.9e-16  Score=123.27  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=93.4

Q ss_pred             HHHHHcCCC-CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903           99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (231)
Q Consensus        99 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~  173 (231)
                      ..++..... ++.+|||+|||+|..+..+++   ++.+|+|+|+++.+++.++++....+. ++++++.+|..+ +.+.+
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence            444444433 457999999999999999886   345999999999999999998765544 479999999988 34567


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +||+|++..+++++++  ..++++++.++|+|||.+++.+...
T Consensus       114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCC
Confidence            9999999999988853  4678999999999999998877543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.69  E-value=2.8e-16  Score=127.23  Aligned_cols=107  Identities=21%  Similarity=0.345  Sum_probs=88.9

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      ..++.... .++.+|||+|||+|.++..+++  ++.+|+|+|+|+.+++.++++.      .++.|+.+|+.+..+..+|
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~f   94 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQAL   94 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCc
Confidence            34444433 3457999999999999999987  4679999999999999999875      3578999999886666799


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+|+++.+++|+++  ...+++++.++|+|||.+++..
T Consensus        95 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         95 DLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             cEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence            99999999999853  4689999999999999988753

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.69  E-value=8.5e-17  Score=122.20  Aligned_cols=99  Identities=25%  Similarity=0.397  Sum_probs=89.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .+..+|.|+|||+|..+..|++  ++..++|+|.|++|++.|+++.      ++++|..+|+.++.++..+|+++++.++
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAvl  102 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAVL  102 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhhh
Confidence            3458999999999999999998  7889999999999999998876      4689999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++++  +..+++.++...|+|||+|.+..
T Consensus       103 qWlp--dH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106         103 QWLP--DHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             hhcc--ccHHHHHHHHHhhCCCceEEEEC
Confidence            9995  55789999999999999987643

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.68  E-value=2.8e-16  Score=124.53  Aligned_cols=105  Identities=23%  Similarity=0.286  Sum_probs=90.7

Q ss_pred             CcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++|||+|||+|..+..+++.  +.+++|+|+|+.+++.++++....+..++++++..|+......++||+|++..+++|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            37999999999999999873  4699999999999999999987777777899999998764334589999999999998


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+  ...+++.+.++|+|||.+++.++..
T Consensus        81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~  107 (224)
T smart00828       81 KD--KMDLFSNISRHLKDGGHLVLADFIA  107 (224)
T ss_pred             CC--HHHHHHHHHHHcCCCCEEEEEEccc
Confidence            53  5789999999999999999988643

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.68  E-value=8.2e-16  Score=116.76  Aligned_cols=106  Identities=26%  Similarity=0.407  Sum_probs=89.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +..+|||+|||+|..+..+++.+.  +|+++|+++.+++.+++++..++... ++++..|+.+..+.+.||+|+++..++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence            568999999999999999998554  69999999999999999999887665 999999999977778999999998766


Q ss_pred             ccCh---HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          186 AIEP---EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       186 ~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .-..   +...++++...+.|+|||.|+++..
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            5432   3568899999999999999976544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.67  E-value=5.9e-16  Score=124.29  Aligned_cols=110  Identities=23%  Similarity=0.260  Sum_probs=85.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHH--HhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~--~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      .+.+++|||||||.|+++..|+..|+ .|+|+|+++...-...-  ++..  ....+.+....+++....+.||+|+|..
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~~~~FDtVF~MG  190 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPNLGAFDTVFSMG  190 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccccCCcCEEEEee
Confidence            67789999999999999999999888 79999999987655332  2221  1123444445666644467899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      |++|...+  ...|+.+++.|+|||.|++.+...+++
T Consensus       191 VLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  191 VLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             ehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence            99998533  578999999999999999988876654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.67  E-value=8.4e-16  Score=117.61  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=82.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|..+..++.  ++.+|+++|.++.+++.++++....+.. +++++++|+.+....++||+|++.. +
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~  118 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-L  118 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-h
Confidence            4578999999999999998876  4468999999999999999988776553 5999999998865567899999876 4


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +++     ..+++.+.++|+|||.+++..
T Consensus       119 ~~~-----~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       119 ASL-----NVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             hCH-----HHHHHHHHHhcCCCCEEEEEc
Confidence            333     457788899999999998764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.67  E-value=1.5e-15  Score=118.16  Aligned_cols=110  Identities=17%  Similarity=0.096  Sum_probs=94.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--------CCCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCC-CCCCCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFT-WCPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~-~~~~~~f  175 (231)
                      .++.++||++||+|..+..+.+        ...+|+++|+|+.++..++++..+.++.+  ++.|+.+|+++ ++++..|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            3458999999999999998876        22589999999999999999886655433  48999999999 7888999


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      |.....+.+.+.+  +..+.|+++.|+|||||++.+.+|+...
T Consensus       179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~  219 (296)
T KOG1540|consen  179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVE  219 (296)
T ss_pred             eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            9999988888874  5578999999999999999999998754

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.67  E-value=5.1e-18  Score=117.40  Aligned_cols=95  Identities=32%  Similarity=0.450  Sum_probs=62.5

Q ss_pred             EEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903          113 LVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       113 LDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~  188 (231)
                      ||+|||+|.++..++..  +.+++++|+|+.+++.++++........  .+++...+.......++||+|++..+++|+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            79999999999999884  6799999999999988888776653211  233333333334344699999999999999 


Q ss_pred             hHHHHHHHHHHHhhcCCCcEE
Q 026903          189 PEMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~l  209 (231)
                       ++...+++.+.++|+|||+|
T Consensus        80 -~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 -EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS-EE
T ss_pred             -hhHHHHHHHHHHHcCCCCCC
Confidence             56679999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.67  E-value=3.5e-16  Score=126.65  Aligned_cols=104  Identities=24%  Similarity=0.324  Sum_probs=84.2

Q ss_pred             CCcEEEecCCCchHH----HHhcC-------CCCeEEEEeCChHHHHHHHHHhccC------------------------
Q 026903          109 KGRALVPGCGTGYDV----VAMAS-------PERYVVGLEISDIAIKKAEELSSSL------------------------  153 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~----~~l~~-------~~~~v~~iD~s~~~i~~a~~~~~~~------------------------  153 (231)
                      +.+|||+|||+|...    ..+++       .+.+|+|+|+|+.+++.|++.....                        
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            469999999999743    33333       1458999999999999999854210                        


Q ss_pred             --CCCCceEEEEccCCCCC-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          154 --PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       154 --~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                        .+..+++|.++|+.+.. +.+.||+|+|.++++|++++.+.++++++.++|+|||+|++.
T Consensus       180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence              01236899999999954 467899999999999999889999999999999999999763

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.66  E-value=7.1e-16  Score=115.65  Aligned_cols=98  Identities=30%  Similarity=0.319  Sum_probs=81.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||.|.++..+++.+.+++|+|+++.+++.      .     ++.+...+... ..+.++||+|+|..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~fD~i~~~~~l   88 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R-----NVVFDNFDAQDPPFPDGSFDLIICNDVL   88 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T-----TSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h-----hhhhhhhhhhhhhccccchhhHhhHHHH
Confidence            3456899999999999999998899999999999999988      1     13333333334 4456799999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|++  +...+|+.+.++|||||++++.+...
T Consensus        89 ~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   89 EHLP--DPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             GGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            9996  46899999999999999999988765

...

>PLN03075 nicotianamine synthase; Provisional

Probab=99.66  E-value=9.7e-16  Score=124.19  Aligned_cols=138  Identities=16%  Similarity=0.132  Sum_probs=101.9

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHH----------cC-CCCCCcEEEecCCCchH-HHHhcC---CCCeEEEEeCC
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQ----------SG-ALPKGRALVPGCGTGYD-VVAMAS---PERYVVGLEIS  139 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~vLDiGcG~G~~-~~~l~~---~~~~v~~iD~s  139 (231)
                      ...|.+.......||......+....+++          .. ..++.+|+|||||.|.+ +..++.   ++.+++++|.+
T Consensus        79 E~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d  158 (296)
T PLN03075         79 EAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID  158 (296)
T ss_pred             HHHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC
Confidence            35565555555566664333222222211          11 22568999999997744 343432   56689999999


Q ss_pred             hHHHHHHHHHhcc-CCCCCceEEEEccCCCCCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          140 DIAIKKAEELSSS-LPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       140 ~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +++++.|++.+.. .++.++++|..+|+.+..+ .+.||+|++. ++++++.+.+.++++.+.+.|+|||.|++-.
T Consensus       159 ~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        159 PSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             HHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            9999999998854 5666789999999998543 4689999999 9999987888999999999999999998765

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.66  E-value=2.4e-15  Score=124.70  Aligned_cols=110  Identities=19%  Similarity=0.170  Sum_probs=94.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +..+|||+|||+|.++..+++  ++.+++++|. +.+++.++++....+..++++++.+|+.+...+ .+|+|++..++|
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh  226 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY  226 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence            347999999999999999988  4568999998 789999999988887778899999999863222 379999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      +++++...++++++.+.|+|||+|++.++..+++
T Consensus       227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~  260 (306)
T TIGR02716       227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP  260 (306)
T ss_pred             cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence            9988777899999999999999999999865543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.66  E-value=1.3e-15  Score=116.95  Aligned_cols=101  Identities=21%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      +.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|+++....+.. +++++.+|+.+....++||+|++...   
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~---  121 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV---  121 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc---
Confidence            68999999999999998875  6679999999999999999998887764 49999999988544668999998753   


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                         .....+++.+.++|+|||++++.....
T Consensus       122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107        122 ---ASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             ---cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence               223578999999999999999886543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.65  E-value=1.9e-15  Score=123.27  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|..+..+++   ...+|+++|+++.+++.|+++....+. ++++|+.+|+.+ +.++++||+|+++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            3568999999999998877665   334799999999999999998766544 378999999988 44566899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +++|.+  +..++++++.++|||||+|++.++...
T Consensus       155 v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~  187 (272)
T PRK11873        155 VINLSP--DKERVFKEAFRVLKPGGRFAISDVVLR  187 (272)
T ss_pred             cccCCC--CHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            998874  346789999999999999999887543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.65  E-value=3.1e-15  Score=118.20  Aligned_cols=102  Identities=21%  Similarity=0.258  Sum_probs=88.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++++++.|+++........++.|..+|+.+..  ++||+|++..+++|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~~  132 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIHY  132 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHhC
Confidence            468999999999999999999888999999999999999998876554457999999998864  689999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +++....+++++.+.+++++++.+
T Consensus       133 ~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       133 PASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEE
Confidence            877788899999999987765544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.65  E-value=3.8e-15  Score=126.47  Aligned_cols=111  Identities=26%  Similarity=0.285  Sum_probs=93.1

Q ss_pred             HHHcCC-CCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026903          101 LHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI  178 (231)
Q Consensus       101 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i  178 (231)
                      +++... .++.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.|+++....    .+++...|..+.  .++||.|
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~I  232 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRI  232 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEE
Confidence            444443 3568999999999999999987 5779999999999999999987432    378888887765  3689999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ++..+++|++......+++++.++|||||.+++.++..+
T Consensus       233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            999999999877778999999999999999999877554

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.64  E-value=1.1e-15  Score=117.97  Aligned_cols=143  Identities=20%  Similarity=0.204  Sum_probs=111.4

Q ss_pred             cccccchhhhhccCCCCCCCCCCcHHHHHHHHcC-CC---CCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHH
Q 026903           72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-AL---PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAI  143 (231)
Q Consensus        72 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i  143 (231)
                      .....+|+.+|....+.+.  ..+..+.+-+..+ ..   +..+|||+|||.|.....+++    .+..++++|.|+.++
T Consensus        33 ~~~~k~wD~fy~~~~~rFf--kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai  110 (264)
T KOG2361|consen   33 REASKYWDTFYKIHENRFF--KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI  110 (264)
T ss_pred             cchhhhhhhhhhhcccccc--chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH
Confidence            4456899999998877542  2244443333322 22   224899999999999999988    336899999999999


Q ss_pred             HHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          144 KKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       144 ~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +..+++.....  .++.....|+..     +...+++|+|.+.+++..++++....++..+.++|||||.|++-+|...+
T Consensus       111 ~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D  188 (264)
T KOG2361|consen  111 ELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD  188 (264)
T ss_pred             HHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence            99998776543  456666677666     34567999999999999999999999999999999999999999998763

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.64  E-value=6.2e-15  Score=121.64  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC----CCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++.....    ...++.|...|+.+.  .+.||+|+|..
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~  220 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD  220 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence            356799999999999999999999999999999999999999875431    123578999998664  46899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +++|++++....+++.+.. +.++|.++
T Consensus       221 vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        221 VLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            9999987766677887775 45665543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.64  E-value=7.2e-15  Score=119.81  Aligned_cols=158  Identities=20%  Similarity=0.177  Sum_probs=106.0

Q ss_pred             ceeeeccccccccCcccCC---CccccccccCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHHc
Q 026903           28 SSVRTRSFGIRATKPKMGK---NREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS  104 (231)
Q Consensus        28 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .++++.+ +++.+..+-+.   ....-+..+.+.+..++-..++.+           +..+.+    ......+..++..
T Consensus        17 ~~~~C~~-~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~f-----------l~~g~y----~~l~~~i~~~l~~   80 (272)
T PRK11088         17 NSWICPQ-NHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAF-----------LDAGHY----QPLRDAVANLLAE   80 (272)
T ss_pred             CEEEcCC-CCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHH-----------HHCCCh----HHHHHHHHHHHHH
Confidence            4567765 67766655443   222223556667777777766655           222111    1112223333433


Q ss_pred             C-CCCCCcEEEecCCCchHHHHhcCC-----CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeE
Q 026903          105 G-ALPKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL  177 (231)
Q Consensus       105 ~-~~~~~~vLDiGcG~G~~~~~l~~~-----~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~  177 (231)
                      . ..+..+|||+|||+|.++..+++.     +..++|+|+|+.+++.|+++.      +++.|..+|+.+ ++++++||+
T Consensus        81 ~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~  154 (272)
T PRK11088         81 RLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDA  154 (272)
T ss_pred             hcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeE
Confidence            2 234478999999999999988752     237999999999999998764      358899999888 556779999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++....         ..++++.++|||||+++++...+
T Consensus       155 I~~~~~~---------~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        155 IIRIYAP---------CKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             EEEecCC---------CCHHHHHhhccCCCEEEEEeCCC
Confidence            9975432         13578999999999999886544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.63  E-value=1.1e-14  Score=122.68  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=87.9

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCC--CceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ..+|||+|||+|..+..+++  ++.+|+++|.|+.+++.+++++..+...  .+++++..|..+..+..+||+|+|+..+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF  308 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence            36999999999999999988  4569999999999999999998765432  3689999998876555689999999777


Q ss_pred             cc---cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CA---IEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |.   +++....++++.+.++|+|||.|+++.
T Consensus       309 h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        309 HQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            64   344556789999999999999999875

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.63  E-value=7.1e-15  Score=116.87  Aligned_cols=144  Identities=15%  Similarity=0.189  Sum_probs=102.2

Q ss_pred             HHHHHHhccccccchhhhhccCCCCCCCC----CCcHH---HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEE
Q 026903           64 NKLQQLMHIESSGGWEKCWEEGLTPWDIG----QPAPI---IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVG  135 (231)
Q Consensus        64 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~---~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~  135 (231)
                      ..++..+.+...+.|...|..........    .....   +..++... ..++.+|||+|||+|.++..+++.+..|++
T Consensus        11 ~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~   90 (230)
T PRK07580         11 SEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVA   90 (230)
T ss_pred             hhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEE
Confidence            33444554445677888886632210000    01111   22233321 234579999999999999999998889999


Q ss_pred             EeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEE
Q 026903          136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       136 iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  209 (231)
                      +|+++.+++.|+++....+..+++++..+|+...  .++||+|++..+++|++++....+++.+.+.+++++.+
T Consensus        91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580         91 SDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             EECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence            9999999999999887665545799999995433  46799999999999988888888999998877655543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.63  E-value=3.6e-15  Score=123.87  Aligned_cols=100  Identities=17%  Similarity=0.120  Sum_probs=84.9

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      ++.+|||+|||+|.++..+++  .+.+|+++|+++.+++.++++...    .+++++.+|+.+ .++.++||+|++..++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            457999999999999988876  356999999999999999987542    358899999988 4556789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|+++.  ..+++++.++|+|||.+++..
T Consensus       189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        189 EYWPDP--QRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             hhCCCH--HHHHHHHHHhcCCCcEEEEEE
Confidence            998644  568999999999999998764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.63  E-value=5.7e-15  Score=129.51  Aligned_cols=106  Identities=23%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~~  184 (231)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++....   .++++++++|+..   +.+.++||+|++..++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            457999999999999999999888999999999999987664322   2468999999864   3456789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|++++...++++++.++|||||++++.+...
T Consensus       114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            99988888999999999999999999877543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.63  E-value=1.2e-14  Score=111.40  Aligned_cols=108  Identities=18%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+.  +++++.+|+.+... ++||+|+++..+++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECCCCCC
Confidence            4457999999999999999999877999999999999999998876543  58899999887543 48999999988776


Q ss_pred             cChH-------------------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       187 ~~~~-------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .++.                   ...++++++.++|+|||.+++......
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            6431                   246789999999999999988775543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.62  E-value=2.3e-15  Score=107.13  Aligned_cols=104  Identities=24%  Similarity=0.330  Sum_probs=87.2

Q ss_pred             CcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~~~~~  185 (231)
                      .+|||+|||+|.++..+++.+ .+++++|+++..++.+++++...+..++++++++|+.+.   .+..+||+|+++..+.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~   81 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG   81 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence            589999999999999999977 799999999999999999998887777899999999883   4678999999987765


Q ss_pred             ccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 AIE------PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~~~------~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ...      .+....+++++.++|+|||.++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            431      1245788999999999999998764

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.62  E-value=6.7e-15  Score=117.45  Aligned_cols=102  Identities=25%  Similarity=0.230  Sum_probs=86.8

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      .+.+|||+|||+|.++..+++.+  .+++++|+++.+++.++++..     +++.++.+|+.+ +.+.++||+|++..++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l  108 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL  108 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence            34799999999999999998844  478999999999999988764     258899999988 4466789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+.  +...+++.+.++|+|||.+++.++..
T Consensus       109 ~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       109 QWCD--DLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             hhcc--CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            9984  34679999999999999999887654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.61  E-value=1.1e-14  Score=119.55  Aligned_cols=111  Identities=18%  Similarity=0.153  Sum_probs=88.7

Q ss_pred             HHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026903          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI  178 (231)
Q Consensus       100 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i  178 (231)
                      .++.....++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...+++..++.+...+.... ..++||+|
T Consensus       151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlV  229 (288)
T TIGR00406       151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVI  229 (288)
T ss_pred             HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEE
Confidence            34444455678999999999999999888765 89999999999999999998777666677777764333 34689999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++...     +....++..+.++|+|||.+++..+..
T Consensus       230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            987543     334678999999999999999987643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.61  E-value=4.6e-15  Score=115.68  Aligned_cols=105  Identities=21%  Similarity=0.158  Sum_probs=84.1

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-CCC---CCCCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~---~~~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.++++....+. .++.++++|+ ...   .++++||+|++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            568999999999999999987  456899999999999999998876654 5699999999 442   456789999986


Q ss_pred             CcccccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIE------PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ....+..      ......+++++.++|+|||++++.+
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            5433221      1124678999999999999998875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.61  E-value=1.6e-14  Score=112.92  Aligned_cols=107  Identities=21%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE  173 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  173 (231)
                      ..+++... .++.+|||+|||+|+.+..+++   .+.+|+++|+++++++.|++++...+...+++++.+|..+.. ...
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            33444433 3558999999999999988876   245899999999999999999887766567999999998743 346


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +||+|++..++.+++        .++.+.|+|||+|++..
T Consensus       142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence            899999998887764        35778999999997754

>PRK05785 hypothetical protein; Provisional

Probab=99.61  E-value=7.7e-15  Score=116.28  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|..+..+++. +.+|+|+|+|+++++.|++..         .++++|+.+ ++++++||+|++..+++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~  121 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH  121 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence            4689999999999999999886 579999999999999998641         356788887 56778999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++  +..++++++.++|||.  +.+.+++
T Consensus       122 ~~~--d~~~~l~e~~RvLkp~--~~ile~~  147 (226)
T PRK05785        122 ASD--NIEKVIAEFTRVSRKQ--VGFIAMG  147 (226)
T ss_pred             ccC--CHHHHHHHHHHHhcCc--eEEEEeC
Confidence            985  4578999999999994  3344444

>PRK06922 hypothetical protein; Provisional

Probab=99.61  E-value=8.7e-15  Score=128.93  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=88.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+|+.+++.|+++....+  .++.++++|..+.   +++++||+|+++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            3568999999999999988876  56799999999999999998765433  3578899998773   456789999999


Q ss_pred             Cccccc-----------ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          182 TFFCAI-----------EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       182 ~~~~~~-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .++|++           +.+...++++++.++|||||.+++.+.
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            888865           235678999999999999999999874

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.61  E-value=2.4e-14  Score=117.13  Aligned_cols=105  Identities=24%  Similarity=0.282  Sum_probs=85.3

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc-
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC-  185 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~-  185 (231)
                      +.+|||+|||+|.++..+++  ++.+|+++|+|+.+++.|+++...++..++++++.+|+.+..+..+||+|+++..+. 
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVD  201 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCC
Confidence            47999999999999999997  456999999999999999999988776678999999998766556899999974321 


Q ss_pred             -----ccCh-----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 -----AIEP-----------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 -----~~~~-----------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                           ++++                 +....+++.+.+.|+|||++++..
T Consensus       202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                 1111                 233678899999999999987643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.60  E-value=4.9e-15  Score=109.71  Aligned_cols=139  Identities=21%  Similarity=0.294  Sum_probs=104.5

Q ss_pred             ccchhhhhccCCC----------CCCCCCCcHHHHHHHHcC-C----CCC-CcEEEecCCCchHHHHhcCCCC--eEEEE
Q 026903           75 SGGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG-A----LPK-GRALVPGCGTGYDVVAMASPER--YVVGL  136 (231)
Q Consensus        75 ~~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~----~~~-~~vLDiGcG~G~~~~~l~~~~~--~v~~i  136 (231)
                      .+||++.|.....          -|.-......+..++... .    .+. .+|||+|||.|.+...|++.|.  ..+|+
T Consensus        18 K~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~Gv   97 (227)
T KOG1271|consen   18 KSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGV   97 (227)
T ss_pred             HHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcccc
Confidence            4788888876211          354444444455554433 1    122 3999999999999999999665  59999


Q ss_pred             eCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccccC--h----HHHHHHHHHHHhhcCCCcEE
Q 026903          137 EISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       137 D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~~~~--~----~~~~~~l~~~~~~L~pgG~l  209 (231)
                      |+|+++++.|+..++..+.++.|+|.+.|+.++ +..+.||+|+.-..+..++  +    .-+..++..+.+.|+|||++
T Consensus        98 DYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif  177 (227)
T KOG1271|consen   98 DYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF  177 (227)
T ss_pred             ccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence            999999999999888888877899999999994 4567899999887776542  1    12256788899999999998


Q ss_pred             EEEE
Q 026903          210 ITLM  213 (231)
Q Consensus       210 ~~~~  213 (231)
                      +|..
T Consensus       178 vItS  181 (227)
T KOG1271|consen  178 VITS  181 (227)
T ss_pred             EEEe
Confidence            8754

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.59  E-value=1.6e-14  Score=115.30  Aligned_cols=108  Identities=26%  Similarity=0.309  Sum_probs=91.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|.++..++..+   .+++++|+++.+++.++++....+...++.++.+|+.+. ...+.||+|++..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            45899999999999999998744   699999999999999999886654445789999999884 34568999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +++++  +...+++.+.++|+|||.+++.++...
T Consensus       131 l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~  162 (239)
T PRK00216        131 LRNVP--DIDKALREMYRVLKPGGRLVILEFSKP  162 (239)
T ss_pred             cccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence            88885  346789999999999999998877543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=8.5e-15  Score=118.41  Aligned_cols=112  Identities=25%  Similarity=0.247  Sum_probs=89.0

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ...++++...++.+|||+|||+|.+++..++.|+ .++|+|++|.+++.+++|...+++...++....+.......++||
T Consensus       152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D  231 (300)
T COG2264         152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD  231 (300)
T ss_pred             HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence            4556666677889999999999999999999998 699999999999999999998876543333333444444446999


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+++-. .    +....+...+.+.|+|||+++++..
T Consensus       232 vIVANIL-A----~vl~~La~~~~~~lkpgg~lIlSGI  264 (300)
T COG2264         232 VIVANIL-A----EVLVELAPDIKRLLKPGGRLILSGI  264 (300)
T ss_pred             EEEehhh-H----HHHHHHHHHHHHHcCCCceEEEEee
Confidence            9998652 2    3446788999999999999998774

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.59  E-value=2.2e-14  Score=114.41  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=88.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~  183 (231)
                      ..++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++......  .+++...++.+..  ..+.||+|++..+
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            34568999999999999999998888999999999999999988765432  4778888877643  4578999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++|.+.  ...+++.+.+.|+|||.+++..+.
T Consensus       124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             hhccCC--HHHHHHHHHHHcCCCcEEEEEecC
Confidence            998853  457899999999999999887653

>PRK06202 hypothetical protein; Provisional

Probab=99.58  E-value=2e-14  Score=114.61  Aligned_cols=104  Identities=16%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             CCCcEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|.++..|++    .|  .+|+|+|+++.+++.|+++....    ++.+...+... ..++++||+|++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEEE
Confidence            457999999999999888874    23  49999999999999998875432    35566655444 224568999999


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +.++||+++++...+++++.++++  |.+++.++..+
T Consensus       136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            999999988777899999999998  56666666543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.58  E-value=6.1e-14  Score=100.54  Aligned_cols=101  Identities=16%  Similarity=0.078  Sum_probs=81.2

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++....+. .+++++.+|....  ....+||+|++...
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence            3579999999999999999883  46899999999999999988766543 3688998887652  22358999998665


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..     ...++++.+.+.|+|||.+++..+
T Consensus        98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        98 GG-----LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ch-----hHHHHHHHHHHHcCCCCEEEEEec
Confidence            43     335889999999999999987654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.58  E-value=5.7e-14  Score=115.15  Aligned_cols=104  Identities=24%  Similarity=0.301  Sum_probs=84.2

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc---
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF---  184 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~---  184 (231)
                      .+|||+|||+|.++..++.  ++.+|+++|+|+++++.|+++...++...+++|+++|+.+..+..+||+|+++..+   
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999997  45699999999999999999988777666799999999986655589999997322   


Q ss_pred             ----------cccCh----------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 ----------CAIEP----------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ----------~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                                .|-|.          .....+++.+.+.|+|||++++..
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                      11111          245678899999999999886633

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK08317 hypothetical protein; Provisional

Probab=99.57  E-value=6.3e-14  Score=111.76  Aligned_cols=105  Identities=29%  Similarity=0.395  Sum_probs=87.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++....  ..++++..+|+.+ ..+.++||+|++..
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence            34579999999999999999873   458999999999999999873322  2468999999887 44567899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++|+.+  ...+++++.++|+|||.+++.+..
T Consensus        96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         96 VLQHLED--PARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             hhhccCC--HHHHHHHHHHHhcCCcEEEEEecC
Confidence            9999853  467899999999999999987754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.56  E-value=1.3e-14  Score=118.24  Aligned_cols=111  Identities=24%  Similarity=0.245  Sum_probs=86.4

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ..+++++...++.+|||+|||+|.+++..++.|+ +|+++|+++.+++.|++|+..+++.+++.+.  .. ......+||
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~-~~~~~~~~d  227 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS-EDLVEGKFD  227 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT-SCTCCS-EE
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee-cccccccCC
Confidence            4555555567788999999999999999999888 8999999999999999999999888776553  22 222347899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+++...     +....++..+.++|+|||.|+++..-.
T Consensus       228 lvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  228 LVVANILA-----DVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             EEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             EEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence            99976554     344678888999999999999987643

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.56  E-value=3.7e-14  Score=114.20  Aligned_cols=104  Identities=24%  Similarity=0.243  Sum_probs=80.6

Q ss_pred             HHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEE
Q 026903          101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF  179 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~  179 (231)
                      .+.....++.+|||+|||+|..+..+++.|. +|+++|+++.+++.|+++...+++.+++.+..++.       +||+|+
T Consensus       112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vv  184 (250)
T PRK00517        112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIV  184 (250)
T ss_pred             HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEE
Confidence            3333345678999999999999998888776 59999999999999999988776544454443332       799999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++...     +....++..+.++|+|||++++..+..
T Consensus       185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        185 ANILA-----NPLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence            86442     334678899999999999999987644

>PRK14967 putative methyltransferase; Provisional

Probab=99.56  E-value=1e-13  Score=109.87  Aligned_cols=115  Identities=19%  Similarity=0.218  Sum_probs=88.3

Q ss_pred             HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      .+...+.... .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+.  ++.++.+|+.+..+.++
T Consensus        24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~  101 (223)
T PRK14967         24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP  101 (223)
T ss_pred             HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence            3445554433 3457999999999999999988665 999999999999999998876543  48899999988666678


Q ss_pred             eeEEEeCCcccccCh-------------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       175 fD~i~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ||+|+++..+..-+.                   .....+++.+.++|+|||++++..
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999999854432211                   124568888999999999988754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.56  E-value=7e-14  Score=122.75  Aligned_cols=165  Identities=18%  Similarity=0.232  Sum_probs=112.9

Q ss_pred             Cccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC----C------
Q 026903           47 NREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG----A------  106 (231)
Q Consensus        47 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~------  106 (231)
                      +...+. +...+++..+.+.+.+++.++..       -++..||...  ..+ ....|++..+.+++..    .      
T Consensus        39 ~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~-~VLIPRpeTE~Lve~~l~~~~~~~~~~  117 (506)
T PRK01544         39 PIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNK-HVLIPRSDTEVLVDVVFQCHSRESGNP  117 (506)
T ss_pred             CHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCC-CcccCCCcHHHHHHHHHHHhhhccccc
Confidence            344443 44567777777777777764433       2334444442  223 3445555544443321    0      


Q ss_pred             -------------------CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc
Q 026903          107 -------------------LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (231)
Q Consensus       107 -------------------~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d  165 (231)
                                         .++.+|||+|||+|..+..++.  ++.+|+++|+|+.+++.|+++...+++.++++++.+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D  197 (506)
T PRK01544        118 EKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSN  197 (506)
T ss_pred             cccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecc
Confidence                               1235899999999999998876  5679999999999999999998877766789999999


Q ss_pred             CCCCCCCCceeEEEeCCcccccC-------------h-----------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          166 FFTWCPTELFDLIFDYTFFCAIE-------------P-----------EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       166 ~~~~~~~~~fD~i~~~~~~~~~~-------------~-----------~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +.+..+.+.||+|+++..+....             |           +....+++.+.+.|+|||.+++.
T Consensus       198 ~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        198 WFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             hhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            98765556899999975332110             0           12356778888999999998763

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.56  E-value=5.6e-14  Score=110.72  Aligned_cols=106  Identities=24%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE  173 (231)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  173 (231)
                      ..+++.. ..++.+|||+|||+|+.+..+++..   .+|+++|+++.+++.|++++...+. ++++++.+|..+.. ...
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccC
Confidence            3344433 3355899999999999999998743   3699999999999999999887765 47999999998743 345


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +||+|++.....+++        +.+.+.|+|||+|++..
T Consensus       146 ~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       146 PYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence            899999877665553        45778899999988754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.56  E-value=1.2e-13  Score=108.70  Aligned_cols=129  Identities=25%  Similarity=0.235  Sum_probs=94.4

Q ss_pred             chhhhhccCCCCCCCCC--CcHHHHH-HHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026903           77 GWEKCWEEGLTPWDIGQ--PAPIIVH-LHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus        77 ~w~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      +++..|.....+|....  ..+.+.. ++.... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.+++++..
T Consensus        43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~  122 (212)
T PRK00312         43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ  122 (212)
T ss_pred             HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence            44555665555544332  2444433 333333 3558999999999999998887666899999999999999999877


Q ss_pred             CCCCCceEEEEccCCCCCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          153 LPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       153 ~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+.. ++++..+|..+..+ .++||+|++...++++        .+.+.+.|+|||.+++...
T Consensus       123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence            6543 59999999877433 4689999988776655        3457789999999987654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=1.9e-13  Score=112.89  Aligned_cols=103  Identities=24%  Similarity=0.305  Sum_probs=84.4

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc--
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC--  185 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~--  185 (231)
                      .+|||+|||+|.++..++.  ++.+|+++|+|+.+++.|+++...++..++++++++|+.+..+..+||+|+++..+.  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999987  456999999999999999999988776667999999998765556899999974321  


Q ss_pred             ----ccCh-----------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          186 ----AIEP-----------------EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       186 ----~~~~-----------------~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                          .+++                 +....+++.+.+.|+|||.+++.
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                1110                 23467889999999999998874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=6.4e-14  Score=107.42  Aligned_cols=108  Identities=23%  Similarity=0.251  Sum_probs=90.3

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCce
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~f  175 (231)
                      ...+++.. ..++.+|||||||+|+.+..|++...+|+.+|..++..+.|++++...+.. ++.++++|... +.+..+|
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPy  139 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPY  139 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCc
Confidence            34444444 445689999999999999999997779999999999999999999888765 49999999999 5555799


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |.|+.......+|.        .+.+.||+||++++..=
T Consensus       140 D~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         140 DRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence            99999888887763        47888999999987543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=1e-13  Score=108.89  Aligned_cols=105  Identities=19%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~  173 (231)
                      ..++.... .++.+|||+|||+|+.+..+++.   +.+|+++|+++++++.+++++...+. .+++++.+|... +....
T Consensus        66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCC
Confidence            33444333 35689999999999999888763   35999999999999999999877654 469999999887 33456


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +||+|++.....+++        +.+.+.|||||+|++.
T Consensus       145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence            899999887765553        3567789999998774

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.55  E-value=2.9e-14  Score=107.72  Aligned_cols=105  Identities=21%  Similarity=0.305  Sum_probs=89.2

Q ss_pred             CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceE-EEEccCCCCC--CCCceeEEEeCCccc
Q 026903          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTWC--PTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~-~~~~d~~~~~--~~~~fD~i~~~~~~~  185 (231)
                      ..|||+|||+|.+-.+.-- ++..|+++|+++.+-+.+.+.+.++ ...++. |+.++.++..  +++++|.|++..++.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            5789999999998877653 7889999999999999999888766 334566 8999999944  788999999999987


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      -.  ++..+.|+++.++|+|||++++.++...
T Consensus       157 Sv--e~~~k~L~e~~rlLRpgG~iifiEHva~  186 (252)
T KOG4300|consen  157 SV--EDPVKQLNEVRRLLRPGGRIIFIEHVAG  186 (252)
T ss_pred             cc--CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            76  5567889999999999999999998664

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.55  E-value=1.6e-13  Score=114.81  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=85.5

Q ss_pred             CCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      ..+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..++..  .+++..|..+.. .+.||+|+++..||.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence            468999999999999999884  458999999999999999988876543  567788877643 468999999988876


Q ss_pred             c---ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          187 I---EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       187 ~---~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .   ......++++.+.+.|+|||.|+++..
T Consensus       274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            3   235668999999999999999987653

>PRK14968 putative methyltransferase; Provisional

Probab=99.55  E-value=1.2e-13  Score=106.27  Aligned_cols=109  Identities=23%  Similarity=0.330  Sum_probs=87.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|..+..+++.+.+++++|+++++++.++++....+..++ +.++.+|+.+......||+|+++..+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            3557999999999999999999888999999999999999988766554333 889999998866666899999876543


Q ss_pred             ccC-------------------hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .-.                   ......+++.+.++|+|||.+++...+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            311                   233467899999999999998876543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.55  E-value=8.2e-14  Score=110.03  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=88.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++..   ...+++++.+|+.+. .+.++||+|++..+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            56899999999999999998743   389999999999999998775   234689999999883 44568999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++++  +...+++.+.+.|+|||.+++.++..
T Consensus       116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~  146 (223)
T TIGR01934       116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSK  146 (223)
T ss_pred             eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            88874  45689999999999999999988754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.55  E-value=3.3e-14  Score=110.25  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=83.3

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEEeCC
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~~~~  182 (231)
                      ..+|||||||+|.++..+++  +..+++|+|+++.+++.|+++....++. +++++++|+.+.    .+.+.+|.|+++.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            46999999999999999998  4669999999999999999887766543 799999999762    3456899999876


Q ss_pred             cccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          183 FFCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       183 ~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ...+....      ....+++.+.++|||||.|++.+
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            54432111      11578999999999999998865

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=4.3e-14  Score=111.52  Aligned_cols=107  Identities=26%  Similarity=0.309  Sum_probs=90.7

Q ss_pred             CCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCc
Q 026903          109 KGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTF  183 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~  183 (231)
                      .++|||+|||+|..++.++++ . .+++++|+.+++.+.|+++...+++.+++++++.|+.+..   ...+||+|+|+..
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            589999999999999999985 3 6999999999999999999999889999999999999943   2346999999977


Q ss_pred             ccccChH----------------HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++-....                ..+.+++...++|||||.+.++.-+
T Consensus       125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~  172 (248)
T COG4123         125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP  172 (248)
T ss_pred             CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence            6543221                2378999999999999999887643

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.54  E-value=7.8e-14  Score=107.55  Aligned_cols=100  Identities=17%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++....+. .+++++.+|..... .+.||+|++....
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~  107 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG  107 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence            35589999999999999999873  46999999999999999998876654 36899999876543 3579999987665


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .++     ..+++.+.+.|+|||++++..
T Consensus       108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        108 GNL-----TAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             cCH-----HHHHHHHHHhcCCCeEEEEEE
Confidence            443     457889999999999997754

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.54  E-value=2.7e-13  Score=114.65  Aligned_cols=163  Identities=21%  Similarity=0.259  Sum_probs=106.6

Q ss_pred             CCccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC---CCCCCcE
Q 026903           46 KNREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG---ALPKGRA  112 (231)
Q Consensus        46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~v  112 (231)
                      .+..++. +...+++..+.+++.+++.++..       .....+|...  ..+ ....|++..+.+++..   ..++.+|
T Consensus       177 ~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p-~vLIPRpeTE~LVe~aL~~l~~~~rV  255 (423)
T PRK14966        177 YTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNP-NVLIPRPETEHLVEAVLARLPENGRV  255 (423)
T ss_pred             cCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCC-CccCCCccHHHHHHHhhhccCCCCEE
Confidence            3334433 44566777777777776654422       1223333321  111 1223454444444432   2244799


Q ss_pred             EEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-C-CCCceeEEEeCCcccccC
Q 026903          113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       113 LDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~fD~i~~~~~~~~~~  188 (231)
                      ||+|||+|..+..++.  ++.+|+++|+|+++++.|+++...++  .+++++++|+.+. . ..++||+|+|+..+..-.
T Consensus       256 LDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~  333 (423)
T PRK14966        256 WDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENG  333 (423)
T ss_pred             EEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCCCCCcc
Confidence            9999999999998885  56799999999999999999987765  3699999999773 2 245799999986542110


Q ss_pred             ------------h-----------HHHHHHHHHHHhhcCCCcEEEE
Q 026903          189 ------------P-----------EMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       189 ------------~-----------~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                                  |           +....+++.+.+.|+|||.+++
T Consensus       334 e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil  379 (423)
T PRK14966        334 DKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL  379 (423)
T ss_pred             hhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence                        0           1235777788889999998765

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.54  E-value=2.2e-13  Score=109.67  Aligned_cols=115  Identities=27%  Similarity=0.354  Sum_probs=88.5

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      +..++......+.+|||+|||+|.++..++.  ++.+++++|+++.+++.++++....+.. ++.++.+|+.+..+.++|
T Consensus        77 ~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~f  155 (251)
T TIGR03534        77 VEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKF  155 (251)
T ss_pred             HHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCce
Confidence            3344443333446999999999999999998  3569999999999999999988766543 699999999886667789


Q ss_pred             eEEEeCCcccc------cChHH------------------HHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFCA------IEPEM------------------RAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~~------~~~~~------------------~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+|+++..+..      +.++.                  ...+++.+.++|+|||.+++..
T Consensus       156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            99999755432      21111                  2478899999999999987753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03438 probable methyltransferase

Probab=99.53  E-value=1.2e-13  Score=114.19  Aligned_cols=106  Identities=21%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCC----ceeEE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE----LFDLI  178 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~----~fD~i  178 (231)
                      ++.+|||+|||+|..+..|++.   +.+|+++|+|+++++.+++++....-..++.++++|+.+.  .+..    ...++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            4479999999999999999874   5799999999999999988765422123477889999873  2221    23455


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++...++++++++...+++++.++|+|||.+++..
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            55577889999899999999999999999987644

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.53  E-value=5.1e-13  Score=109.09  Aligned_cols=105  Identities=27%  Similarity=0.354  Sum_probs=83.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|..+..++..  ..+++++|+++.+++.++++.. .....++.++.+|+.+..+.++||+|+++..+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            34579999999999999999883  4699999999999999999886 22335799999999886656789999997543


Q ss_pred             cc------cCh------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          185 CA------IEP------------------EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       185 ~~------~~~------------------~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .-      +.+                  +....+++.+.++|+|||.+++.
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            21      111                  22367888899999999998874

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=7.8e-14  Score=111.80  Aligned_cols=104  Identities=25%  Similarity=0.353  Sum_probs=89.7

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      .+|+|||+|.|.++..+++  ++.+++.+|. |++++.+++       .++++++.+|+++..|.  +|+++..+++|++
T Consensus       102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~  171 (241)
T PF00891_consen  102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW  171 (241)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred             cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence            6899999999999999988  7789999999 889998888       36899999999987766  9999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCC--cEEEEEEccCCCCCCCC
Q 026903          188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDHVGGP  223 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pg--G~l~~~~~~~~~~~~~~  223 (231)
                      ++++..++|+++++.|+||  |+|+|.++-.+....++
T Consensus       172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~  209 (241)
T PF00891_consen  172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGP  209 (241)
T ss_dssp             -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSH
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCc
Confidence            9999999999999999999  99999998776654444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.49  E-value=7.5e-13  Score=102.98  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=81.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|.++..+++   .+.+|+++|+++.+++.++++....++.+++.++.+|..+..  ....||.|++.
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~  118 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG  118 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence            4568999999999999998865   346899999999999999999887765567999999987732  23579999975


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ...     .....+++.+.+.|+|||++++.
T Consensus       119 ~~~-----~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        119 GGS-----EKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             CCc-----ccHHHHHHHHHHHcCCCcEEEEE
Confidence            421     33467899999999999999763

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.1e-12  Score=105.61  Aligned_cols=121  Identities=19%  Similarity=0.219  Sum_probs=94.9

Q ss_pred             CCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903           92 GQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      .....-.+-+++.+.. ...+|||+|||.|.++..+++  +..+++-+|.|..+++.+++++..+.... ..++..|+.+
T Consensus       141 ~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~  219 (300)
T COG2813         141 DKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE  219 (300)
T ss_pred             CCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc
Confidence            3333334445554433 346999999999999999998  45699999999999999999998876543 2678888888


Q ss_pred             CCCCCceeEEEeCCcccc---cChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          169 WCPTELFDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       169 ~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ...+ +||+|+|+..||.   +......++++...+.|++||.|.++..
T Consensus       220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            6655 8999999988875   2234446899999999999999988776

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.48  E-value=3.7e-13  Score=106.58  Aligned_cols=105  Identities=20%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~  185 (231)
                      .+.+|||+|||+|.++..+++.+..++++|+++.+++.++++....+. .++++...|+.+...  .++||+|++..+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            467999999999999999988788899999999999999998765432 158888888877332  36899999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+.  ....+++.+.+.|+|||.+++....
T Consensus       124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       124 HVP--DPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             hCC--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            885  3457899999999999999887653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.47  E-value=7.7e-13  Score=111.19  Aligned_cols=105  Identities=19%  Similarity=0.206  Sum_probs=85.8

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~  182 (231)
                      .+..+||||||+|.++..+|+  +...++|+|+++.+++.+.+++...++ .++.++++|+..   ..+++++|.|++++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            346999999999999999998  567999999999999999988877655 469999999865   46678999999876


Q ss_pred             cccccChH----HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          183 FFCAIEPE----MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       183 ~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ...|.-..    ....+++.+.++|+|||.+.+.+
T Consensus       201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            55442211    12689999999999999998855

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.47  E-value=1e-12  Score=109.98  Aligned_cols=106  Identities=17%  Similarity=0.123  Sum_probs=86.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..++..+.+++|+|+++.++..+++++...+..+ ++++.+|+.+. .+.+.||+|+++..+.
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG  259 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence            355799999999999999888888999999999999999999988776554 88999999984 3456899999975442


Q ss_pred             c-------cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 A-------IEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .       ...+...++++.+.+.|+|||++++..
T Consensus       260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV  294 (329)
T ss_pred             CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence            2       111345789999999999999987764

This family is found exclusively in the Archaea.

>PRK04266 fibrillarin; Provisional

Probab=99.46  E-value=1.2e-12  Score=103.51  Aligned_cols=99  Identities=20%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~  180 (231)
                      .++.+|||+|||+|.++..+++.  ...|+++|+++++++.+.+++...   .++.++.+|..++.    ..+.||+|++
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence            35579999999999999999884  358999999999999877766543   46899999987631    1346999995


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ...    .+.....+++++.++|||||.+++.
T Consensus       148 d~~----~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        148 DVA----QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCC----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            422    1233355789999999999999984

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.45  E-value=9e-13  Score=103.23  Aligned_cols=99  Identities=15%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------CCCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~~~  174 (231)
                      .++.+|||+|||+|.++..+++.   +..|+++|+++.         ..  . .+++++++|+.+.         ...++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            35579999999999999988873   358999999881         11  1 3589999999983         34578


Q ss_pred             eeEEEeCCcccccChH---------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++..+.++....         ....+++.+.++|+|||.+++..|..+
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence            9999998765553221         125689999999999999999887654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.45  E-value=2.5e-12  Score=88.33  Aligned_cols=100  Identities=34%  Similarity=0.454  Sum_probs=83.0

Q ss_pred             cEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCccccc
Q 026903          111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI  187 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~~~~~  187 (231)
                      +|+|+|||.|.++..+++ .+.+++++|+++..++.+++..... ...++.++..|+.+..  ...+||+|++..+++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999998 6679999999999999988533222 2346899999999854  45689999999998874


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                       .+....+++.+.+.|+|||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence             367788999999999999998765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.45  E-value=1e-12  Score=101.21  Aligned_cols=106  Identities=22%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~~~~  187 (231)
                      .+.||.|+|-|+.+..++.+ ..+|-.+|+.+..++.|++.+.... ..-.++++..+.++.|. .+||+|++.+++.|+
T Consensus        57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL  135 (218)
T PF05891_consen   57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL  135 (218)
T ss_dssp             SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred             ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence            79999999999999877664 4599999999999999998775521 12367899999997765 699999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++++..++|++|.+.|+|+|++++-+-..
T Consensus       136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~  164 (218)
T PF05891_consen  136 TDEDLVAFLKRCKQALKPNGVIVVKENVS  164 (218)
T ss_dssp             -HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence            99999999999999999999999866543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PHA03411 putative methyltransferase; Provisional

Probab=99.44  E-value=1.5e-12  Score=104.26  Aligned_cols=112  Identities=18%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC
Q 026903           94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~  171 (231)
                      |...+..++.. .....+|||+|||+|.++..++..  +.+|+++|+++.+++.++++.      ++++++++|+.+...
T Consensus        51 P~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~  123 (279)
T PHA03411         51 PEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES  123 (279)
T ss_pred             CHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc
Confidence            45555555432 234579999999999998888763  569999999999999999874      258899999999765


Q ss_pred             CCceeEEEeCCcccccChHHH------------------HHHHHHHHhhcCCCcEEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMR------------------AAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~------------------~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ...||+|+++..+.+.+..+.                  .++++....+|+|+|.++++
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            678999999999888654322                  45667778899999977665

>PRK04457 spermidine synthase; Provisional

Probab=99.44  E-value=1.4e-12  Score=105.45  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|..+..+++  ++.+++++|+++++++.|++++...+..++++++.+|..+..  ..++||+|++...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~  145 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF  145 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence            357999999999999998876  567999999999999999998765544568999999987732  2358999997532


Q ss_pred             cc-ccChH-HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FC-AIEPE-MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~-~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      -. ..+.. ....+++.+.++|+|||++++..+..
T Consensus       146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            11 12111 22689999999999999998865543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.44  E-value=2.9e-13  Score=104.40  Aligned_cols=104  Identities=26%  Similarity=0.339  Sum_probs=73.8

Q ss_pred             CCCcEEEecCCCchHHHHhc----C-----C--CCeEEEEeCChHHHHHHHHHhccCC----------------------
Q 026903          108 PKGRALVPGCGTGYDVVAMA----S-----P--ERYVVGLEISDIAIKKAEELSSSLP----------------------  154 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~----~-----~--~~~v~~iD~s~~~i~~a~~~~~~~~----------------------  154 (231)
                      +..+|+.+||++|.-...||    +     .  ..+++|+|+|+.+++.|++-.....                      
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34699999999997665554    2     1  2489999999999999976322210                      


Q ss_pred             -----CCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          155 -----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       155 -----~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                           +..+|.|.+.|+.+ ..+.+.||+|+|.+++.+++++.+.++++.+.+.|+|||+|++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l  173 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL  173 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence                 12379999999999 5566799999999999999999999999999999999999866

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.43  E-value=1.3e-12  Score=104.05  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=83.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD  176 (231)
                      .++++|||+|||+|+-+..++.   .+.+++++|+++++++.|++++...++.++++++.+|+.+..       +.++||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            3468999999999998887765   345999999999999999999999888888999999998832       135899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|++...     .+....++..+.++|+|||++++..
T Consensus       147 ~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        147 FAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             EEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            9995322     2455678899999999999887744

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.43  E-value=7.5e-13  Score=100.11  Aligned_cols=98  Identities=19%  Similarity=0.231  Sum_probs=79.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~  181 (231)
                      ..|+.+|||+|||.|.+...|.+ ++...+|+|++++.+..+.++.        +.++++|+.+   .+++++||.|+.+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehH
Confidence            34568999999999999999987 7789999999999999988753        7799999998   5678899999999


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .++.++.  ...++|+++.++   |... ++.|+.-
T Consensus        83 qtLQ~~~--~P~~vL~EmlRV---gr~~-IVsFPNF  112 (193)
T PF07021_consen   83 QTLQAVR--RPDEVLEEMLRV---GRRA-IVSFPNF  112 (193)
T ss_pred             hHHHhHh--HHHHHHHHHHHh---cCeE-EEEecCh
Confidence            9999984  345677777665   4444 3455443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.42  E-value=1.5e-12  Score=108.19  Aligned_cols=109  Identities=24%  Similarity=0.317  Sum_probs=81.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhcc---------CCCCCceEEEEccCCC-----CCCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~---------~~~~~~i~~~~~d~~~-----~~~~  172 (231)
                      ++.+|||+|||.|..+......+ ..++|+|+++..|+.|+++...         ....-...|+.+|.+.     ..+.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            56899999999999988887755 4999999999999999998821         1111246788888876     2233


Q ss_pred             --CceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 --~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                        ..||+|-|.+++|+.  +.+....+|+.+...|+|||+++..+.+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence              489999999999985  44566779999999999999999877544

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.42  E-value=5e-12  Score=95.05  Aligned_cols=101  Identities=23%  Similarity=0.206  Sum_probs=87.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~i~~~~  182 (231)
                      ..++.+++|||||+|..+..++.  +..+|+++|.++++++..++|..+.+ .+++.++.++..+..+.. +||.||...
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG  110 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG  110 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence            45668999999999999999994  66799999999999999999999988 578999999999965444 699999877


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      . -.+     +.+++.+...|+|||+|++..
T Consensus       111 g-~~i-----~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         111 G-GNI-----EEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             C-CCH-----HHHHHHHHHHcCcCCeEEEEe
Confidence            6 333     578999999999999998754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.42  E-value=7.7e-13  Score=103.14  Aligned_cols=108  Identities=23%  Similarity=0.246  Sum_probs=80.8

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT  172 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~  172 (231)
                      ...+++... .++.+|||||||+|+.+..|+.   +...|+++|.++..++.|++++...+. .++.++.+|.... ...
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccC
Confidence            455555553 4568999999999999999987   334799999999999999999887643 3799999998873 344


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+||.|++......+|        ..+.+.|++||+|++.--
T Consensus       140 apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             -SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred             CCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence            6899999988877664        347788999999987543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.41  E-value=2.5e-12  Score=99.86  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=79.0

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|.++..+++  ++.+|+++|+++++++.+++++...+. .+++++.+|+.+..  ....+|.++... 
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~-  117 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG-  117 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence            458999999999999998875  457999999999999999999877654 36999999986621  122456665421 


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                           ......+++.+.+.|+|||.+++.....
T Consensus       118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        118 -----GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             -----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence                 1234678999999999999998877544

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=5.1e-12  Score=103.00  Aligned_cols=156  Identities=24%  Similarity=0.249  Sum_probs=105.4

Q ss_pred             cccCCCChhHHHHHHHHhccccccc-------hhhhhccC--CCCCCCCCCcHHHHHHHHc---CCCCCC-cEEEecCCC
Q 026903           53 NDNVIKSHPRVNKLQQLMHIESSGG-------WEKCWEEG--LTPWDIGQPAPIIVHLHQS---GALPKG-RALVPGCGT  119 (231)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~-------w~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~-~vLDiGcG~  119 (231)
                      .....++..+.+++.++..++....       ...+|...  ..+ ..-.|++....+++.   ...... +|||+|||+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~-~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGS  121 (280)
T COG2890          43 HPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDE-GVLIPRPDTELLVEAALALLLQLDKRILDLGTGS  121 (280)
T ss_pred             ccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCC-CceecCCchHHHHHHHHHhhhhcCCcEEEecCCh
Confidence            4455667777777777775542211       11222221  111 223345444444443   111122 799999999


Q ss_pred             chHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc-----cCh---
Q 026903          120 GYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-----IEP---  189 (231)
Q Consensus       120 G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~-----~~~---  189 (231)
                      |..+..++..+  .+|+++|+|+.+++.|++|+..+++ .++.++.+|+++.... +||+|+++..+.-     ..+   
T Consensus       122 G~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~~~~~~~~~~  199 (280)
T COG2890         122 GAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAEDPELLPEVV  199 (280)
T ss_pred             HHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCcccccChhhh
Confidence            99999999854  4999999999999999999999887 6677888899987655 8999999854321     111   


Q ss_pred             ---------------HHHHHHHHHHHhhcCCCcEEEE
Q 026903          190 ---------------EMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       190 ---------------~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                                     +....++..+.+.|+|||.+++
T Consensus       200 ~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l  236 (280)
T COG2890         200 RYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL  236 (280)
T ss_pred             ccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence                           1336888899999999997765

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.40  E-value=3.4e-12  Score=97.57  Aligned_cols=104  Identities=16%  Similarity=0.230  Sum_probs=85.9

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~fD~i~~~~~~~~  186 (231)
                      +.-|||||||+|.-+..+...|+..+|+|+|+.|++.|.+...+      -.++.+|+-+  ++++++||.+++..++.+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW  124 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW  124 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence            47999999999999999999999999999999999999974322      2578888888  778899999998765554


Q ss_pred             c---------ChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       187 ~---------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +         |..-+..|+..+..+|++|++.++..|+.+.
T Consensus       125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~  165 (270)
T KOG1541|consen  125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE  165 (270)
T ss_pred             ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence            3         3344567888899999999999988887764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.39  E-value=5.2e-12  Score=101.65  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=78.9

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCcc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~~~  184 (231)
                      .+|||+|||+|.++..+++  ++.+|+++|+|+.+++.|+++...++    ++++++|+.+..+   .+.||+|+++..+
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy  163 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY  163 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence            5899999999999999886  45699999999999999999987653    5789999887432   3579999998654


Q ss_pred             c------ccChH------------------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 C------AIEPE------------------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~------~~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .      .++++                  ....+++.+.+.|+|||++++..
T Consensus       164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            2      12221                  23578888889999999998754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00811 spermidine synthase; Provisional

Probab=99.38  E-value=6.9e-12  Score=102.65  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=82.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC----CCCceEEEEccCCCCC--CCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~--~~~~fD~i  178 (231)
                      ..+.+||++|||.|..+..+++. + .+|+++|+++++++.|++.+....    ..++++++.+|.....  ..++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            34579999999999999999884 4 489999999999999999875421    2468999999988843  35689999


Q ss_pred             EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEE
Q 026903          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ++...-.+.++.  ....+++.+.+.|+|||++++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            986543332222  2267889999999999998764

>PTZ00146 fibrillarin; Provisional

Probab=99.38  E-value=7.6e-12  Score=101.30  Aligned_cols=99  Identities=20%  Similarity=0.216  Sum_probs=74.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~  179 (231)
                      .++.+|||+|||+|.++..++..   ...|+++|+++++.+...+.....   .+|.++..|+..+.    +...||+|+
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence            35579999999999999999983   248999999998665554443322   36889999987632    235799999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +...    .+++...++.++.+.|||||.|++.
T Consensus       208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        208 ADVA----QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             EeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence            8764    2344456677899999999999884

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.37  E-value=5.9e-12  Score=107.24  Aligned_cols=107  Identities=21%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++..+++. ++++++++|+.+..     ..++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            468999999999999988776655 9999999999999999999888765 47999999998843     2458999998


Q ss_pred             CCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ......-+.       .....++....++|+|||.|+.+.-
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            755432221       1345666778899999999887553

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.36  E-value=3.8e-12  Score=98.71  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|.++..+++ .+..++|+|+++++++.++++        +++++.+|+.+   ..++++||+|+++.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            457999999999999998876 455889999999999988652        36788888876   244568999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKP  205 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~p  205 (231)
                      ++|+++  ...+++++.+.+++
T Consensus        85 l~~~~d--~~~~l~e~~r~~~~  104 (194)
T TIGR02081        85 LQATRN--PEEILDEMLRVGRH  104 (194)
T ss_pred             hHcCcC--HHHHHHHHHHhCCe
Confidence            999954  45678888776554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02476 O-methyltransferase

Probab=99.35  E-value=2.5e-11  Score=98.10  Aligned_cols=103  Identities=16%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-------CCcee
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~fD  176 (231)
                      .++++|||+|+++|+.++.++.   .+.+++++|.+++..+.|++++...++.++++++.+|..+..+       .++||
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            3468999999999999999987   3558999999999999999999999888899999999888321       35899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +||.-.     +......+++.+.++|+|||++++-.-
T Consensus       197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            999432     235667889999999999999877543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.35  E-value=3.9e-12  Score=103.46  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=85.0

Q ss_pred             CCcEEEecCCCchHHHHhcC----C------CCeEEEEeCChHHHHHHHHHhccC-----------------------C-
Q 026903          109 KGRALVPGCGTGYDVVAMAS----P------ERYVVGLEISDIAIKKAEELSSSL-----------------------P-  154 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~----~------~~~v~~iD~s~~~i~~a~~~~~~~-----------------------~-  154 (231)
                      ..+|+..||++|.-...+|-    .      ..+|+|+|+|+.+++.|++.....                       + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            36999999999976655542    1      248999999999999998752110                       0 


Q ss_pred             ------CCCceEEEEccCCCC-C-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          155 ------NAKFVSFLKADFFTW-C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       155 ------~~~~i~~~~~d~~~~-~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                            +...|+|.+.|+.+. . +.+.||+|+|.+++.|++++.+.++++.+.+.|+|||+|++ ..+..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l-G~sEs  265 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA-GHSEN  265 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE-eCccc
Confidence                  224789999999983 2 35789999999999999999999999999999999998754 44443

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.34  E-value=4e-12  Score=98.51  Aligned_cols=117  Identities=14%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  173 (231)
                      ...+..+....... ..++|+|||+|..++.+++.-.+|+++|+|+++++.|++............+...+..++. .++
T Consensus        21 tdw~~~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~   99 (261)
T KOG3010|consen   21 TDWFKKIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE   99 (261)
T ss_pred             HHHHHHHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence            44555555533222 4999999999988888888766999999999999999886543322223445555555533 367


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCc-EEEEEEcc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG-ELITLMFP  215 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG-~l~~~~~~  215 (231)
                      +.|+|+|..++|++   +.+.+.+.+.++|+++| .+.+-.|.
T Consensus       100 SVDlI~~Aqa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  100 SVDLITAAQAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             ceeeehhhhhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            99999999999998   44678999999998887 66666665

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.34  E-value=1.5e-11  Score=101.90  Aligned_cols=106  Identities=23%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE  173 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  173 (231)
                      ..+++... .++.+|||+|||+|.++..+++..   ..|+++|+++++++.|++++...+. +++.++.+|..+.. ...
T Consensus        70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~  148 (322)
T PRK13943         70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFA  148 (322)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccC
Confidence            34444433 345899999999999999998732   3699999999999999998877654 46899999987733 335


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +||+|++.....+++        ..+.+.|+|||++++..
T Consensus       149 ~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        149 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence            799999876655442        34667899999987743

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.33  E-value=2.4e-11  Score=94.62  Aligned_cols=107  Identities=19%  Similarity=0.230  Sum_probs=88.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCC---CCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCP---TELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~---~~~fD~i~  179 (231)
                      ..+++|||||.+.|+-++.|+.  + ..+++.+|++++.++.|++++.+.++.++|..+. +|..+...   .++||+||
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF  137 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF  137 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence            3568999999999999999987  3 4589999999999999999999999988899988 58777333   47999999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      .-.     .....+.++..+.++|+|||++++-..-..+
T Consensus       138 IDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G  171 (219)
T COG4122         138 IDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG  171 (219)
T ss_pred             EeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence            432     2355678999999999999988876554443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.32  E-value=7.3e-12  Score=114.25  Aligned_cols=107  Identities=21%  Similarity=0.155  Sum_probs=86.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|.+++.++..|. +|+++|+|+.+++.|++++..+++. ++++|+++|+.++.  ...+||+|++...
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            468999999999999999999776 6999999999999999999888775 57999999998743  2458999998643


Q ss_pred             ccccC---------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..--.         ......++..+.++|+|||.|++.+-
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            21100         13456788899999999999987654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.32  E-value=2.3e-11  Score=92.24  Aligned_cols=109  Identities=13%  Similarity=0.081  Sum_probs=77.6

Q ss_pred             HHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeE
Q 026903          100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDL  177 (231)
Q Consensus       100 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~  177 (231)
                      .+++... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...   ++++++++|+.+.. +...||.
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~   80 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYK   80 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCE
Confidence            3444443 34479999999999999999998889999999999999999987542   47999999999953 3446999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+++..++ +..+...++++..  .+.++|.+++ ...
T Consensus        81 vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~-q~e  114 (169)
T smart00650       81 VVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMV-QKE  114 (169)
T ss_pred             EEECCCcc-cHHHHHHHHHhcC--CCcceEEEEE-EHH
Confidence            99876554 4333333333321  2346666644 443

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.32  E-value=1.6e-11  Score=94.78  Aligned_cols=107  Identities=17%  Similarity=0.259  Sum_probs=76.1

Q ss_pred             HHHHHHcC--CCCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---
Q 026903           98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---  169 (231)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---  169 (231)
                      +.++.+..  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+         ..   .+++++++|+.+.   
T Consensus        20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~---~~i~~~~~d~~~~~~~   87 (188)
T TIGR00438        20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI---ENVDFIRGDFTDEEVL   87 (188)
T ss_pred             HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC---CCceEEEeeCCChhHH
Confidence            44444433  345689999999999999888763   3479999999864         11   3578888898763   


Q ss_pred             ------CCCCceeEEEeCCccc--------ccC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          170 ------CPTELFDLIFDYTFFC--------AIE-PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       170 ------~~~~~fD~i~~~~~~~--------~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                            .+.++||+|++....+        |+. .+...++++.+.++|+|||++++..+..
T Consensus        88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence                  2456799999864321        111 1234688999999999999999876554

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.32  E-value=9.4e-12  Score=96.77  Aligned_cols=103  Identities=19%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD  176 (231)
                      ..+++||||||++|+-++.+++   .+.+++.+|.+++..+.|++++...++.++|+++.+|..+..       ..++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3458999999999999999996   467999999999999999999998888889999999998732       135899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +||.-..     ......++..+.++|+|||++++-..
T Consensus       124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             EEEEccc-----ccchhhHHHHHhhhccCCeEEEEccc
Confidence            9995432     34556788899999999998877543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=3.4e-11  Score=104.67  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=86.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC-
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT-  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~-  182 (231)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.+++++...++. +++++.+|..+..+..+||.|++.. 
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcCC
Confidence            4568999999999998887775   3459999999999999999999877653 6899999998866667899999531 


Q ss_pred             -----ccc-------ccChH-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          183 -----FFC-------AIEPE-------MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       183 -----~~~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                           ++.       +.+++       ...++|..+.+.|+|||+|++.+.+..
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                 111       12222       235789999999999999999886654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.31  E-value=6.7e-11  Score=91.64  Aligned_cols=106  Identities=12%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~  183 (231)
                      .++.+|||+|||+|.+++.++.++ .+|+++|.++.+++.+++++...+. .++.++++|+.+..  ....||+|++...
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            345799999999999998755544 5999999999999999999887764 36999999998733  2346999998776


Q ss_pred             ccccChHHHHHHHHHHHh--hcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~~  216 (231)
                      +..   .....+++.+..  .|+|++++++.+...
T Consensus       131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        131 FRK---GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            432   233445565655  379999888776553

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.30  E-value=1.8e-11  Score=94.76  Aligned_cols=103  Identities=25%  Similarity=0.294  Sum_probs=79.5

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeCCc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF  183 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~~~~  183 (231)
                      ..+||||||.|.++..+|.  +..+++|+|+....+..+.++....++ .|+.++++|+..    .++++++|-|+.++.
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            4999999999999999998  778999999999999999887766544 579999999988    456689999997655


Q ss_pred             ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -.|.-..      ....++..+.++|+|||.|.+.+
T Consensus        98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            4432211      12689999999999999998865

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.29  E-value=3.8e-11  Score=96.56  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=85.8

Q ss_pred             CCcEEEecCCCchHHHHhc----C-------CCCeEEEEeCChHHHHHHHHHhcc-----CC------------------
Q 026903          109 KGRALVPGCGTGYDVVAMA----S-------PERYVVGLEISDIAIKKAEELSSS-----LP------------------  154 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~----~-------~~~~v~~iD~s~~~i~~a~~~~~~-----~~------------------  154 (231)
                      .-+|+.+||++|.-...+|    +       ...+|+++|+|..+++.|+.-...     .+                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5799999999996655544    2       135899999999999999764333     11                  


Q ss_pred             -----CCCceEEEEccCCCCC-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       155 -----~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                           +...|.|...|+.... ..+.||+|+|.+|+.+++.+.+.+++..++..|+|||+|++ ..+.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl-G~sE  243 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL-GHSE  243 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE-ccCc
Confidence                 1236899999999944 56789999999999999999999999999999999998865 4444

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=7.4e-11  Score=102.08  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEe
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~  180 (231)
                      ..++.+|||+|||+|..+..+++.+  .+|+++|+++.+++.+++++...+.  +++++++|..+..   ..++||.|++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence            3456899999999999999998743  5899999999999999999987764  3689999998742   3468999995


Q ss_pred             CCccc------c-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFC------A-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~------~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .....      +       ..+       ....++++.+.+.|||||+|++.+.+
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            43211      1       111       12357899999999999999877643

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.27  E-value=6.1e-11  Score=92.00  Aligned_cols=132  Identities=23%  Similarity=0.370  Sum_probs=87.4

Q ss_pred             cchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccC
Q 026903           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      ..++.+|+....+   ....+.+..+ +.....+..+|||||.+|.++..+++ .+. .++|+|+++..|..|+++..-.
T Consensus        30 GNf~~YY~~r~~~---~~~D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   30 GNFDNYYGFRLNP---GDSDPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CCccchhhcccCC---CCCChhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            3445555544322   2223333333 44455668999999999999999999 444 7999999999999999976542


Q ss_pred             C----------------------------------CCCceEEEE-------ccCCCCCCCCceeEEEeCCc--cccc--C
Q 026903          154 P----------------------------------NAKFVSFLK-------ADFFTWCPTELFDLIFDYTF--FCAI--E  188 (231)
Q Consensus       154 ~----------------------------------~~~~i~~~~-------~d~~~~~~~~~fD~i~~~~~--~~~~--~  188 (231)
                      .                                  ..+++.|..       .|+. ......||+|+|..+  +.|+  .
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwg  184 (288)
T KOG2899|consen  106 CDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWG  184 (288)
T ss_pred             ccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccc
Confidence            1                                  001111211       1222 112347999999765  3343  3


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          189 PEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ++-+..+++++.++|.|||+|++.
T Consensus       185 D~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  185 DDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cHHHHHHHHHHHHhhCcCcEEEEc
Confidence            577899999999999999999773

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.27  E-value=6.5e-11  Score=102.41  Aligned_cols=112  Identities=18%  Similarity=0.121  Sum_probs=85.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEe
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~  180 (231)
                      ..++.+|||+|||+|..+..+++  ...+++++|+++.+++.+++++.+.+...++.+..+|.....   ...+||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            34568999999999999998887  236899999999999999999988765534555777776532   3568999996


Q ss_pred             C------CcccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          181 Y------TFFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       181 ~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .      .++.+.++       +       .+.++|..+.++|||||.|++.+.+..
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            3      23433221       1       246899999999999999998876553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.26  E-value=3.1e-11  Score=90.66  Aligned_cols=82  Identities=20%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             EEEeCChHHHHHHHHHhccC--CCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       134 ~~iD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +|+|+|+.+++.|+++....  +...+++|+++|+.+ +.++++||+|++..++++++  ++.++++++.++|||||.|+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence            48999999999998765422  122469999999998 55667999999999999984  56789999999999999999


Q ss_pred             EEEccCC
Q 026903          211 TLMFPIS  217 (231)
Q Consensus       211 ~~~~~~~  217 (231)
                      +.++...
T Consensus        79 i~d~~~~   85 (160)
T PLN02232         79 ILDFNKS   85 (160)
T ss_pred             EEECCCC
Confidence            9999764

>PHA03412 putative methyltransferase; Provisional

Probab=99.26  E-value=1.2e-10  Score=91.49  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             CCCcEEEecCCCchHHHHhcC-----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      .+.+|||+|||+|.++..+++     +..+|+++|+++.+++.|+++..      ++.++.+|+......++||+|+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP  122 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP  122 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence            467999999999999998875     24589999999999999998752      4789999998754456899999997


Q ss_pred             cccccCh----------HHHHHHHHHHHhhcCCCcEEEE
Q 026903          183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       183 ~~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      .+.-...          ....++++...+++++|+ +++
T Consensus       123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL  160 (241)
T PHA03412        123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII  160 (241)
T ss_pred             CCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence            7653221          234668888888666666 444

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.26  E-value=7.1e-11  Score=98.26  Aligned_cols=105  Identities=23%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.|+++...+++ ++++|+++|+.+..  ..+.||+|++...-
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr  250 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR  250 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence            3468999999999999999999889999999999999999999987766 57999999998743  23479999976442


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .-+.    ..++ .+...++|++++|+.+-+..
T Consensus       251 ~G~~----~~~~-~~l~~~~~~~ivyvsc~p~t  278 (315)
T PRK03522        251 RGIG----KELC-DYLSQMAPRFILYSSCNAQT  278 (315)
T ss_pred             CCcc----HHHH-HHHHHcCCCeEEEEECCccc
Confidence            2221    2233 33444788999988776554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.25  E-value=4.9e-11  Score=95.18  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------CCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~f  175 (231)
                      .+.++|||||+++|+-++.++.   .+.+++.+|.+++..+.|++++...++.++|+++.++..+..+        .++|
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            3457999999999999998886   4569999999999999999999998888999999999888322        2589


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+||.-.-     ......++..+.++|+|||++++-.
T Consensus       158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            99995332     3455778889999999999987643

>PLN02366 spermidine synthase

Probab=99.25  E-value=1.3e-10  Score=95.84  Aligned_cols=105  Identities=18%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC---CCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC---PTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~---~~~~fD~i  178 (231)
                      .++++||++|||.|..+..+++. + .+|+.+|+++++++.+++.+....   .+++++++.+|.....   +.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            34589999999999999999883 3 489999999999999999875421   2458999999987632   24589999


Q ss_pred             EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEE
Q 026903          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ++...-.+.+..  ....+++.+.++|+|||++++
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~  204 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT  204 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            986543332221  235789999999999999865

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=5.1e-11  Score=93.56  Aligned_cols=100  Identities=26%  Similarity=0.268  Sum_probs=86.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      ..|+.+|||.|.|+|.++..|+.   +-.+|+.+|+.+..++.|++|+...++.+++++..+|+.+...++.||.|+   
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~---  168 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF---  168 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence            45679999999999999999996   335899999999999999999998888788999999999966666999999   


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                          ++-++.-.++..+.+.|+|||.+++.
T Consensus       169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y  194 (256)
T COG2519         169 ----LDLPDPWNVLEHVSDALKPGGVVVVY  194 (256)
T ss_pred             ----EcCCChHHHHHHHHHHhCCCcEEEEE
Confidence                44445567899999999999987653

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.24  E-value=3.2e-11  Score=97.13  Aligned_cols=120  Identities=20%  Similarity=0.248  Sum_probs=90.7

Q ss_pred             CcHHHHHHH-HcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC-----CCCceEEEEccC
Q 026903           94 PAPIIVHLH-QSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP-----NAKFVSFLKADF  166 (231)
Q Consensus        94 ~~~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~  166 (231)
                      -+.+++..+ .....+...++++|||.|..++..-+.|. .++|+|+.+..|+.|+++...-.     ..-.+.|+.+|.
T Consensus       102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc  181 (389)
T KOG1975|consen  102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC  181 (389)
T ss_pred             hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence            355555433 33355668999999999999999888776 89999999999999998764321     112478999998


Q ss_pred             CC-----CC--CCCceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          167 FT-----WC--PTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       167 ~~-----~~--~~~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +.     ..  ++.+||+|=|.+++|+-  +.+...-+|+.+..+|+|||+++-..
T Consensus       182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI  237 (389)
T ss_pred             chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence            77     11  23349999999999874  44666789999999999999987543

>PLN02672 methionine S-methyltransferase

Probab=99.24  E-value=7.9e-11  Score=110.12  Aligned_cols=123  Identities=22%  Similarity=0.208  Sum_probs=89.7

Q ss_pred             CCCCCcHHHHHHHHcC---C---CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCC------
Q 026903           90 DIGQPAPIIVHLHQSG---A---LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPN------  155 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~---~---~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~------  155 (231)
                      ....|++..+.+++..   .   .++.+|||+|||+|..++.+++  +..+|+++|+|+.+++.|++|...+++      
T Consensus        94 ~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~  173 (1082)
T PLN02672         94 SIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP  173 (1082)
T ss_pred             CcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence            3455666655555432   1   1235899999999999999987  345999999999999999999876432      


Q ss_pred             ---------CCceEEEEccCCCCCCC--CceeEEEeCCccc------ccCh-----------------------------
Q 026903          156 ---------AKFVSFLKADFFTWCPT--ELFDLIFDYTFFC------AIEP-----------------------------  189 (231)
Q Consensus       156 ---------~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~------~~~~-----------------------------  189 (231)
                               .++++|+++|+.+....  ..||+|+++..+.      .+++                             
T Consensus       174 ~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG  253 (1082)
T PLN02672        174 VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG  253 (1082)
T ss_pred             ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence                     24799999999986543  3699999985432      1111                             


Q ss_pred             -HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          190 -EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       190 -~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                       ....+++....++|+|||.+++.
T Consensus       254 L~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        254 LGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEE
Confidence             12257788888999999988753

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=1.2e-10  Score=100.69  Aligned_cols=111  Identities=18%  Similarity=0.167  Sum_probs=85.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEe
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      ..++.+|||+|||+|..+..++.   .+.+|+++|+++..++.+++++.+.++. +++++.+|...+.  ..++||.|++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence            34568999999999999988876   3569999999999999999999887654 5899999987743  3467999997


Q ss_pred             CCcc------cc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          181 YTFF------CA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       181 ~~~~------~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ....      ..       .++       ..+.++|..+.+.|||||+|+..+-+..
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            4221      11       111       1346789999999999999988776544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.24  E-value=5.7e-11  Score=90.35  Aligned_cols=105  Identities=21%  Similarity=0.214  Sum_probs=74.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCC-----CCCCcee
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~-----~~~~~fD  176 (231)
                      ..++.+|||+|||+|..++.++..  +.+|+.+|.++ .++.++.++..+.  ...++.+...|+.+.     ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            445689999999999999999986  56999999998 9999999988765  456789999988762     2345899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|++..+++.  ++..+.+++.+.++|+|+|.+++..
T Consensus       122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            9999999875  3677899999999999999965544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00417 speE spermidine synthase

Probab=99.23  E-value=1.3e-10  Score=94.71  Aligned_cols=105  Identities=19%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      .+.+||++|||+|..+..+++.  ..+++++|+++++++.+++.+....   ..++++++.+|..+..  ..++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3469999999999999888774  3589999999999999999764421   1357888888877632  2468999998


Q ss_pred             CCcccccChHH--HHHHHHHHHhhcCCCcEEEEE
Q 026903          181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       181 ~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ......-+...  ...+++.+.+.|+|||++++.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            65432222222  367889999999999998875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.21  E-value=1.7e-10  Score=93.60  Aligned_cols=111  Identities=19%  Similarity=0.114  Sum_probs=83.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~  181 (231)
                      ..++.+|||+|||+|..+..++.   ....|+++|+++.+++.+++++...+.. ++.++..|..... ....||.|++.
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEc
Confidence            34668999999999999988876   2348999999999999999999887653 5899999987632 33469999964


Q ss_pred             Cc------ccc-------cChH-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          182 TF------FCA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       182 ~~------~~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..      +.+       ..++       ...++|+...+.|||||+|+..+-+..
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            22      111       1111       235799999999999999988765443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=2e-10  Score=99.64  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i  178 (231)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++...+.. +++++.+|..+..     ..+.||.|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEE
Confidence            45689999999999999988872   358999999999999999999887764 5999999988743     24689999


Q ss_pred             EeCC------cccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~------~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++..      ++.+-++       +       .+.++|..+.+.|||||+|+..+.+.
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9642      3332221       1       24688999999999999998776443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.20  E-value=1.7e-10  Score=100.26  Aligned_cols=103  Identities=22%  Similarity=0.188  Sum_probs=80.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++...++. .+++|+.+|+.+..     ...+||+|++.
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            3457999999999999999999888999999999999999999877654 36999999997632     23579999965


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ....-+     ...++.+.+ ++|++++|+++-+.
T Consensus       375 PPr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~  403 (443)
T PRK13168        375 PPRAGA-----AEVMQALAK-LGPKRIVYVSCNPA  403 (443)
T ss_pred             cCCcCh-----HHHHHHHHh-cCCCeEEEEEeChH
Confidence            443322     234555544 69999999987543

>PRK01581 speE spermidine synthase; Validated

Probab=99.20  E-value=2.3e-10  Score=95.21  Aligned_cols=107  Identities=18%  Similarity=0.183  Sum_probs=79.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHH--hc---cCC-CCCceEEEEccCCCCC--CCCce
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEEL--SS---SLP-NAKFVSFLKADFFTWC--PTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~--~~---~~~-~~~~i~~~~~d~~~~~--~~~~f  175 (231)
                      ...+.+||++|||.|..+..+++.  ..+|+.+|+++++++.|++.  +.   ... ..++++++.+|..++.  ..+.|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            344589999999999999988873  35999999999999999972  11   111 2468999999999843  34589


Q ss_pred             eEEEeCCccc---ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          176 DLIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       176 D~i~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      |+|++...-.   ....-....+++.+.+.|+|||++++.
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9999874321   111123367899999999999998765

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.20  E-value=1.3e-10  Score=91.57  Aligned_cols=103  Identities=24%  Similarity=0.196  Sum_probs=84.8

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeCCc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF  183 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~~~~  183 (231)
                      ..+||||||.|.++..+|+  +...++|||+....+..|.+.+.+.++. |+.++++|+..    ..++++.|-|+.++.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            5999999999999999998  6669999999999999999988887754 79999999888    345559999997765


Q ss_pred             ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -.|.-..      ....+++.+.+.|+|||.|.+.+
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            4432111      22689999999999999998865

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=2.3e-10  Score=99.55  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|..+..+++   ...+|+++|+++.+++.+++++...+.. +++++++|+.+...  .+.||+|++.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence            3557999999999999999887   2459999999999999999999887764 49999999987431  2679999975


Q ss_pred             Ccc------ccc-------ChH-------HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFF------CAI-------EPE-------MRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~------~~~-------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...      .+-       .+.       ....+|+.+.++|||||.|+..+-+
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            321      111       111       1356899999999999999865543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.19  E-value=2e-10  Score=88.21  Aligned_cols=103  Identities=20%  Similarity=0.106  Sum_probs=80.6

Q ss_pred             cEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----C-----CCCceeEEE
Q 026903          111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----C-----PTELFDLIF  179 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~-----~~~~fD~i~  179 (231)
                      +|||||||+|..+..+++  +.....-.|+++......+......+...-..-+..|+...    .     ....||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            599999999999999998  66788899999998766666554443322123345566552    1     245899999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |.+++|-++.+....+++...++|++||.|++..
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            9999999988899999999999999999987744

The function of this family is unknown.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.19  E-value=1.4e-10  Score=98.64  Aligned_cols=103  Identities=19%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.+++.++..+..|+++|+++.+++.|+++...++.. +++|+.+|+.+...  ...||+|+.....
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr  310 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPR  310 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence            34579999999999999999998889999999999999999999877653 79999999977432  2469999976554


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..+.    ..+++.+. .++|++++|+.+-+
T Consensus       311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p  336 (374)
T TIGR02085       311 RGIG----KELCDYLS-QMAPKFILYSSCNA  336 (374)
T ss_pred             CCCc----HHHHHHHH-hcCCCeEEEEEeCH
Confidence            4333    33445554 47999999998754

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.18  E-value=8.8e-11  Score=96.04  Aligned_cols=104  Identities=21%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~  183 (231)
                      ...++.|||+|||+|.++++.|+.|+ +|+++|.|.-+ +.|.+.+..+++.+.|+++++.+++ -.|.+..|+|++-+.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence            35678999999999999999999988 99999997766 9999999988888889999999999 344578999999876


Q ss_pred             ccccC-hHHHHHHHHHHHhhcCCCcEEE
Q 026903          184 FCAIE-PEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       184 ~~~~~-~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      -+.+- ..-+..+|-.=-+.|+|||.++
T Consensus       137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  137 GYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            55442 2344555555668999999875

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.18  E-value=1.1e-09  Score=86.61  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=82.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----C--CCCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~~fD~i  178 (231)
                      ..+..+||+|||+|..+..++.  +...|+++|.|+.++..|.+|++++.+.+++.+++.++..    .  ...+++|++
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence            3445899999999999999988  5558999999999999999999999888899988665555    2  345789999


Q ss_pred             EeCCcccccCh------------------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~------------------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|+..+..-++                        +....++.-..+.|+|||.+.+..
T Consensus       227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            99865432111                        122466777889999999775533

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.18  E-value=4.5e-10  Score=86.54  Aligned_cols=106  Identities=11%  Similarity=-0.049  Sum_probs=79.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CC-CceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~-~~fD~i~~  180 (231)
                      ..+.+|||++||+|.+++.++++|. .|+++|.++.+++.+++++...+..++++++++|+....    .. ..||+|+.
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            4568999999999999999999887 899999999999999999888776667999999996631    12 24888886


Q ss_pred             CCcccccChHHHHHHHHHHH--hhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~  216 (231)
                      ...+..   ......+..+.  ..|+++|.+++ ++..
T Consensus       128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~~~  161 (189)
T TIGR00095       128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EEDR  161 (189)
T ss_pred             CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-EecC
Confidence            555432   12234444443  36888886655 4444

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.15  E-value=1.1e-11  Score=95.42  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCCCC-CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC
Q 026903           97 IIVHLHQSGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT  172 (231)
Q Consensus        97 ~~~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~  172 (231)
                      .+.+++......+ .++||+|||||.....+.....+.+|+|+|+.|+++|.++-.-.      +..+.++..   ....
T Consensus       113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~Fl~~~~~  186 (287)
T COG4976         113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVLFLEDLTQ  186 (287)
T ss_pred             HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHHHhhhccC
Confidence            3455555443333 79999999999999999887789999999999999998753211      233444333   2345


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +.||+|.+..|+.++  -.+..++......|+|||.+.++.=..
T Consensus       187 er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         187 ERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             CcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEeccc
Confidence            689999999999998  566788999999999999987765443

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=4.2e-10  Score=84.56  Aligned_cols=77  Identities=25%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             CCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          105 GALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       105 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..+.+..|+|+|||+|.+++..+-.|. .|+++|+++++++.+++|..+  +..++.|+.+|+.+..  ..+|.++.+..
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimNPP  117 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMNPP  117 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEECCC
Confidence            356677899999999999999999886 999999999999999999987  3467999999999865  46788887755


Q ss_pred             cc
Q 026903          184 FC  185 (231)
Q Consensus       184 ~~  185 (231)
                      |.
T Consensus       118 FG  119 (198)
T COG2263         118 FG  119 (198)
T ss_pred             Cc
Confidence            43

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.14  E-value=9.1e-10  Score=90.57  Aligned_cols=122  Identities=18%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             CCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC
Q 026903           92 GQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT  168 (231)
Q Consensus        92 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~  168 (231)
                      ....|.+.+.+-+.  ..++..|||..||||.++....-.|.+++|+|++.+++.-|+.|+..++..+ ..+... |+..
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~  257 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN  257 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence            33467777766655  3456799999999999999999999999999999999999999998876543 444554 8888


Q ss_pred             -CCCCCceeEEEeCCcccccC-------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          169 -WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       169 -~~~~~~fD~i~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                       +++..++|.|++-..+.--+       ++...++++.+.++|++||++++...
T Consensus       258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence             55555799999865443221       24568899999999999998877554

>PRK03612 spermidine synthase; Provisional

Probab=99.14  E-value=3e-10  Score=100.49  Aligned_cols=106  Identities=22%  Similarity=0.262  Sum_probs=80.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHh--ccC---C-CCCceEEEEccCCCCC--CCCceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWC--PTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~--~~~---~-~~~~i~~~~~d~~~~~--~~~~fD~  177 (231)
                      ++++|||+|||+|..+..+++. + .+++++|+++++++.++++.  ...   . .+++++++.+|..+..  ..++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            4579999999999999998884 3 59999999999999999842  211   1 1358999999998832  3468999


Q ss_pred             EEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          178 IFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       178 i~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |++.......+.   -...++++.+.+.|+|||++++..
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            998754332211   112468899999999999987754

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.13  E-value=2.5e-10  Score=98.61  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=78.5

Q ss_pred             CCcEEEecCCCchHHHHhcCCC------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      +..|+|+|||+|-++...++.+      .+|+++|-++.++...++++..+++.++|+++++|+++...+..+|+|++-.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            4689999999999987776643      4999999999999888887677777789999999999987777999999865


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      .-.....+.....|....+.|||||+++
T Consensus       267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            5433444555667888889999999875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.12  E-value=4e-10  Score=87.13  Aligned_cols=106  Identities=14%  Similarity=0.099  Sum_probs=77.6

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      -.++... ..++..|+|+.||-|.+++.+++  .+..|+++|++|.+++.+++++..+++.+++..+++|..+..+...|
T Consensus        92 r~Ri~~~-v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~  170 (200)
T PF02475_consen   92 RRRIANL-VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKF  170 (200)
T ss_dssp             HHHHHTC---TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-E
T ss_pred             HHHHHhc-CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCcccc
Confidence            3444443 45678999999999999999998  77799999999999999999999998888899999999997667899


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      |-|++...-..      ..+|..+..++++||++.
T Consensus       171 drvim~lp~~~------~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  171 DRVIMNLPESS------LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEE--TSSG------GGGHHHHHHHEEEEEEEE
T ss_pred             CEEEECChHHH------HHHHHHHHHHhcCCcEEE
Confidence            99986443211      247888999999999774

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.11  E-value=2.6e-09  Score=78.53  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             HHHHHHcCCCC-CCcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---
Q 026903           98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---  170 (231)
Q Consensus        98 ~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---  170 (231)
                      .+.+....... +.-|||+|.|+|.++..++++|.   .++++|+|+..+....+...      .+.++.+|.++..   
T Consensus        37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l  110 (194)
T COG3963          37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL  110 (194)
T ss_pred             HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence            34444443333 46999999999999999999664   79999999999999888763      3668999988832   


Q ss_pred             ---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          171 ---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       171 ---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                         ....||.|+|...+-.+|...+.++|+.+...|.+||.|+..+|.+-.
T Consensus       111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s  161 (194)
T COG3963         111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLS  161 (194)
T ss_pred             hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence               345799999998888888888999999999999999999999998543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.10  E-value=8.6e-10  Score=91.17  Aligned_cols=79  Identities=20%  Similarity=0.092  Sum_probs=62.6

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEE-ccCCC---C--CCCCceeEEE
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADFFT---W--CPTELFDLIF  179 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~-~d~~~---~--~~~~~fD~i~  179 (231)
                      +.++||||||+|.....++.  .+.+++|+|+++.+++.|++++..+ ++.++|++.. .+..+   .  .+.+.||+|+
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv  194 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL  194 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence            47999999999977777665  5779999999999999999999988 5777888864 33322   1  2356899999


Q ss_pred             eCCccccc
Q 026903          180 DYTFFCAI  187 (231)
Q Consensus       180 ~~~~~~~~  187 (231)
                      |+..|+--
T Consensus       195 cNPPf~~s  202 (321)
T PRK11727        195 CNPPFHAS  202 (321)
T ss_pred             eCCCCcCc
Confidence            99887643

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.09  E-value=2.7e-10  Score=87.23  Aligned_cols=108  Identities=23%  Similarity=0.171  Sum_probs=80.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~  180 (231)
                      .++.++||+.||+|..++..+++|+ +|+.+|.+++++...++|+...+..+++.++..|.....     ....||+|+.
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            5678999999999999999999997 999999999999999999988777677999999977622     4578999997


Q ss_pred             CCcccccChHHHHHHHHHHH--hhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~  216 (231)
                      ...+..-  .....++..+.  ..|+++|.+++.+...
T Consensus       121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            6554432  11366777776  7899999886655444

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.09  E-value=7.1e-10  Score=93.64  Aligned_cols=107  Identities=24%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~i~~  180 (231)
                      .+++|||+.|=||.++...+..|+ +|+++|.|..+++.|++|+..+++. +++.|+++|++++.     ...+||+|+.
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            378999999999999999999998 9999999999999999999988864 56899999999943     2348999996


Q ss_pred             CCc-ccccC------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~-~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      -.. |..-.      ..+..+++..+.+.|+|||.+++++-
T Consensus       297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~  337 (393)
T COG1092         297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC  337 (393)
T ss_pred             CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            422 21110      13557889999999999999988663

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.09  E-value=4e-10  Score=89.79  Aligned_cols=108  Identities=22%  Similarity=0.150  Sum_probs=80.2

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC-
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP-  171 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-  171 (231)
                      +..++... ..|+.+|||.|.|+|.++..|++   +..+|+..|+.++.++.|++++...++.+++++.+.|+.+ -+. 
T Consensus        29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            44444444 45678999999999999999997   5569999999999999999999999888899999999975 332 


Q ss_pred             --CCceeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEE
Q 026903          172 --TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITL  212 (231)
Q Consensus       172 --~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~  212 (231)
                        +..+|.|+.-..       +.-.++..+.++| ++||++++.
T Consensus       109 ~~~~~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen  109 ELESDFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             T-TTSEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred             cccCcccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEE
Confidence              357999994322       2234678899999 899988654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.08  E-value=1.2e-09  Score=88.69  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ...++.|||+|||+|.++.+.+..|+ +|+++|- .++.++|++....+.+.++|.++.+-+++...++..|+|++-..-
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG  253 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG  253 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence            45678999999999999999999887 8999998 467899999998888889999999999997666789999986442


Q ss_pred             c-ccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          185 C-AIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~-~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      . .+....++.++. .++.|+|.|..+
T Consensus       254 ~mL~NERMLEsYl~-Ark~l~P~GkMf  279 (517)
T KOG1500|consen  254 YMLVNERMLESYLH-ARKWLKPNGKMF  279 (517)
T ss_pred             hhhhhHHHHHHHHH-HHhhcCCCCccc
Confidence            2 233233344433 448999999763

>PRK04148 hypothetical protein; Provisional

Probab=99.05  E-value=6.2e-09  Score=74.85  Aligned_cols=96  Identities=16%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             CCCcEEEecCCCch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~  184 (231)
                      ++.+|||+|||.|. ++..|++.|..|+++|+++.+++.++++.        ++++.+|++++...  ..+|+|++... 
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp-   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP-   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence            34789999999996 88899999999999999999999998763        68999999996543  57999996432 


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                          +.+....+.++++.  -|.-|++...+.+.
T Consensus        87 ----p~el~~~~~~la~~--~~~~~~i~~l~~e~  114 (134)
T PRK04148         87 ----PRDLQPFILELAKK--INVPLIIKPLSGEE  114 (134)
T ss_pred             ----CHHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence                23333444445443  35567777776654

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.05  E-value=4e-09  Score=84.45  Aligned_cols=110  Identities=18%  Similarity=0.137  Sum_probs=92.1

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--C--CCceeEEE
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--P--TELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~fD~i~  179 (231)
                      .+-+||||.||.|+..+..+.  +.  ..+...|+++..++..++...+.++.+-++|.++|+++..  .  .-..++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            346999999999999988876  22  4899999999999999999999888877799999999931  1  23579999


Q ss_pred             eCCcccccChHH-HHHHHHHHHhhcCCCcEEEEEE--ccCC
Q 026903          180 DYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLM--FPIS  217 (231)
Q Consensus       180 ~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~--~~~~  217 (231)
                      .+..++.+++.+ ....+..+.+++.|||+|+...  |.|.
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            999999998855 5668999999999999998876  5554

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.05  E-value=1.6e-09  Score=88.80  Aligned_cols=100  Identities=19%  Similarity=0.147  Sum_probs=87.5

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccCh
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP  189 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~  189 (231)
                      ...+|+|.|.|+.+..++..-.++-+++++...+..+.+... .+    |+.+.+|.+.-.|.  -|+|++.+++||+++
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~mkWiLhdwtD  251 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWMKWILHDWTD  251 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEEEeecccCCh
Confidence            699999999999999999855579999999888888877764 32    88889999986554  469999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          190 EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++..++|++|...|+|||.+++.+...
T Consensus       252 edcvkiLknC~~sL~~~GkIiv~E~V~  278 (342)
T KOG3178|consen  252 EDCVKILKNCKKSLPPGGKIIVVENVT  278 (342)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            999999999999999999999988843

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.03  E-value=2.1e-09  Score=93.34  Aligned_cols=101  Identities=20%  Similarity=0.163  Sum_probs=77.8

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..++. .+++|+.+|+.+..     ....||+|+...
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            347999999999999999999878999999999999999999877664 47999999987632     234799999544


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .-.-+.    ..+++.+. .++|++.+|+.+-
T Consensus       371 Pr~G~~----~~~l~~l~-~l~~~~ivyvsc~  397 (431)
T TIGR00479       371 PRKGCA----AEVLRTII-ELKPERIVYVSCN  397 (431)
T ss_pred             CCCCCC----HHHHHHHH-hcCCCEEEEEcCC
Confidence            322221    34555554 3789998887653

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.02  E-value=7.7e-10  Score=89.95  Aligned_cols=110  Identities=25%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC----CCCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~fD~i~~  180 (231)
                      ..+++|||+.|=+|.++...+..|+ +|+.+|.|..+++.+++|+..+++. .+++|++.|+++..    ..++||+|++
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            3468999999999999999988887 8999999999999999999988765 57999999998832    3468999997


Q ss_pred             CCc-ccc--cC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTF-FCA--IE-PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~-~~~--~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      -.. |..  .. ..+..+++..+.++|+|||.|+++.-++
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            532 211  00 1456788999999999999988766544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.00  E-value=1.1e-09  Score=83.93  Aligned_cols=116  Identities=14%  Similarity=0.138  Sum_probs=71.0

Q ss_pred             hhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc
Q 026903           79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF  158 (231)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~  158 (231)
                      ++-|......|. ..|...+.+++.. ..+...|-|+|||.+.++..+ ..+..|...|+.+.                +
T Consensus        45 H~Gfr~Qv~~WP-~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~----------------n  105 (219)
T PF05148_consen   45 HEGFRQQVKKWP-VNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP----------------N  105 (219)
T ss_dssp             HHHHHHHHCTSS-S-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------S
T ss_pred             HHHHHHHHhcCC-CCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC----------------C
Confidence            444444555665 3344444555543 223479999999999999765 35678999999442                2


Q ss_pred             eEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       159 i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      -.+..+|+.+ |.++++.|++++...+..   ++...++.+..|+|||||.|.|.+...
T Consensus       106 ~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~S  161 (219)
T PF05148_consen  106 PRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKS  161 (219)
T ss_dssp             TTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecc
Confidence            3467899988 778889999997766654   466789999999999999999988643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=4.1e-09  Score=87.32  Aligned_cols=114  Identities=17%  Similarity=0.044  Sum_probs=95.1

Q ss_pred             HHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-Ccee
Q 026903           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFD  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD  176 (231)
                      .+++.. ..++..|+|..+|-|.+++.+|+.|.. |+++|++|.+++++++|+..+++.+.+..+++|..+..+. +.+|
T Consensus       180 ~Rva~~-v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD  258 (341)
T COG2520         180 ARVAEL-VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD  258 (341)
T ss_pred             HHHHhh-hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence            334433 345789999999999999999998874 9999999999999999999998888899999999996655 7899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      -|+.....      ....++....+.+++||.+.+.++.++..
T Consensus       259 rIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         259 RIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             EEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            99954432      22457888889999999999999988765

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.99  E-value=4.5e-10  Score=83.63  Aligned_cols=72  Identities=22%  Similarity=0.352  Sum_probs=57.7

Q ss_pred             cEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC----ceeEEEeCC
Q 026903          111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYT  182 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~fD~i~~~~  182 (231)
                      .|+|+.||.|.++..+|+.+.+|+++|+++..++.|+.|+.-+++.++|+|+++|+.+..+..    .+|+|+++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            699999999999999999989999999999999999999999998899999999999943322    289999864

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.97  E-value=1.1e-09  Score=92.31  Aligned_cols=100  Identities=18%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----------------
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----------------  172 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----------------  172 (231)
                      +.+|||+|||+|.++..+++....|+++|+++++++.|++++..++.. +++|+.+|+.+..+.                
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            357999999999999999887679999999999999999999877653 699999999873221                


Q ss_pred             -CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 -~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                       ..||+|+....-.-    ...++++.+.   +|++++|+.+-+.
T Consensus       277 ~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~p~  314 (353)
T TIGR02143       277 SYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCNPE  314 (353)
T ss_pred             cCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcCHH
Confidence             13799884322111    1134444443   4789999887543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.97  E-value=1e-08  Score=78.34  Aligned_cols=117  Identities=19%  Similarity=0.273  Sum_probs=81.0

Q ss_pred             CcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcC--CCCe---------EEEEeCChHHHHHHHHHhccCCCCCceE
Q 026903           94 PAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVS  160 (231)
Q Consensus        94 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~---------v~~iD~s~~~i~~a~~~~~~~~~~~~i~  160 (231)
                      .++.+...+-..  ..++..|||..||+|.+.+..+.  ....         ++|+|+++++++.|++|+...+....+.
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~   91 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID   91 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence            355554444433  33457999999999999988765  2323         8899999999999999999888878899


Q ss_pred             EEEccCCCCC-CCCceeEEEeCCcccc-cCh-----HHHHHHHHHHHhhcCCCcEEE
Q 026903          161 FLKADFFTWC-PTELFDLIFDYTFFCA-IEP-----EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       161 ~~~~d~~~~~-~~~~fD~i~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +.+.|+.+.. ..+.+|.|+++..+.. +..     +....+++.+.++|++..+++
T Consensus        92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l  148 (179)
T PF01170_consen   92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL  148 (179)
T ss_dssp             EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred             EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            9999999955 6679999999876653 221     334677889999999943333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.96  E-value=4.6e-08  Score=75.82  Aligned_cols=111  Identities=22%  Similarity=0.247  Sum_probs=86.8

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---  169 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---  169 (231)
                      .++..+++  ...++++||+|.=+|+-++.+|.   .+.+|+++|+++...+.+.+.....+...+|+++++...+.   
T Consensus        63 ~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   63 QFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence            33444554  34568999999999988887775   66799999999999999998888888888999999988872   


Q ss_pred             -C---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          170 -C---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       170 -~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       .   ..++||++|.    .|. ......+..++.+++++||+|++-.
T Consensus       141 l~~~~~~~tfDfaFv----Dad-K~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  141 LLADGESGTFDFAFV----DAD-KDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHhcCCCCceeEEEE----ccc-hHHHHHHHHHHHhhcccccEEEEec
Confidence             1   3468999993    221 2334578899999999999987755

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.96  E-value=4.7e-09  Score=86.21  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..++..... ++.+|||||||.|.++..+++.+.+|+++|+++.+++.+++++...+..++++++.+|+.+... .
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~  100 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P  100 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence            4455666665543 5589999999999999999998889999999999999999988765444679999999988432 3


Q ss_pred             ceeEEEeCCccc
Q 026903          174 LFDLIFDYTFFC  185 (231)
Q Consensus       174 ~fD~i~~~~~~~  185 (231)
                      .||.|+++..++
T Consensus       101 ~~d~VvaNlPY~  112 (294)
T PTZ00338        101 YFDVCVANVPYQ  112 (294)
T ss_pred             ccCEEEecCCcc
Confidence            689998765554

>PLN02823 spermine synthase

Probab=98.95  E-value=1.1e-08  Score=85.36  Aligned_cols=105  Identities=16%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             CCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      .+++||.+|+|.|..+..+++ . ..+++.+|+++++++.|++.+....   .+++++++.+|.....  ..++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            457999999999999998887 3 3489999999999999999875432   2468999999999843  3458999997


Q ss_pred             CCcccc--cChH--HHHHHHH-HHHhhcCCCcEEEEE
Q 026903          181 YTFFCA--IEPE--MRAAWAQ-KIKDFLKPDGELITL  212 (231)
Q Consensus       181 ~~~~~~--~~~~--~~~~~l~-~~~~~L~pgG~l~~~  212 (231)
                      -..-..  -++.  .-..+++ .+.+.|+|||++++.
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            632110  0111  1246777 899999999988653

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.94  E-value=2.2e-08  Score=80.80  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=76.5

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..++..... ++.+|||+|||+|.++..+++.+..++++|+++.+++.++++...   .++++++.+|+.+.... 
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence            4556666665533 458999999999999999999888999999999999999987743   24799999999884432 


Q ss_pred             cee---EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          174 LFD---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD---~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+|   +|+++..+ |++    ..++..+..  .+++...+..+
T Consensus        91 ~~d~~~~vvsNlPy-~i~----~~il~~ll~--~~~~~~~~~~~  127 (253)
T TIGR00755        91 DFPKQLKVVSNLPY-NIS----SPLIFKLLE--KPKFRLAVLMV  127 (253)
T ss_pred             HcCCcceEEEcCCh-hhH----HHHHHHHhc--cCCCceEEEEe
Confidence            466   66655443 333    334444443  45554444443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.94  E-value=2.4e-09  Score=90.67  Aligned_cols=98  Identities=19%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------------C
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------T  172 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------------~  172 (231)
                      .+|||++||+|.++..+++...+|+++|.++.+++.++++...+++. +++|+.+|+.+..+                 .
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~  286 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS  286 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccC
Confidence            57999999999999999887779999999999999999998777653 79999999877321                 1


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..||+|+....-.-+    ..++++.+.   +|++++|+.+-+
T Consensus       287 ~~~D~v~lDPPR~G~----~~~~l~~l~---~~~~ivyvSC~p  322 (362)
T PRK05031        287 YNFSTIFVDPPRAGL----DDETLKLVQ---AYERILYISCNP  322 (362)
T ss_pred             CCCCEEEECCCCCCC----cHHHHHHHH---ccCCEEEEEeCH
Confidence            258999943332111    134444444   378888888765

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.94  E-value=3.6e-09  Score=83.01  Aligned_cols=114  Identities=15%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             hhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc
Q 026903           79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF  158 (231)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~  158 (231)
                      +.-|......|-. +|...+.+.+.. ......|-|+|||.+.++.   +.-..|+.+|+.+                .+
T Consensus       153 H~gfr~QV~kWP~-nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~  211 (325)
T KOG3045|consen  153 HAGFRSQVKKWPE-NPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VN  211 (325)
T ss_pred             HHHHHHHHHhCCC-ChHHHHHHHHHh-CcCceEEEecccchhhhhh---ccccceeeeeeec----------------CC
Confidence            3333344446653 333333333332 2234799999999998876   3445899999843                24


Q ss_pred             eEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       159 i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      -+++.+|+.+ +.++++.|++++...+.-   ++...++.++.++|++||.|+|.+...
T Consensus       212 ~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S  267 (325)
T KOG3045|consen  212 ERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS  267 (325)
T ss_pred             CceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh
Confidence            5689999999 677889999997655543   466789999999999999999988644

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.1e-08  Score=76.25  Aligned_cols=108  Identities=18%  Similarity=0.288  Sum_probs=83.9

Q ss_pred             CCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ...++|||||+|..+.+|++   ++..+.++|+++++++...+.+..++  .+++.++.|+..-...++.|+++.+..+.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence            57999999999999999988   45589999999999998888776654  35889999999965568999998764432


Q ss_pred             ccCh-------------------HHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          186 AIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      --++                   +...+++..+-+.|.|.|++|++.-..++
T Consensus       122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~  173 (209)
T KOG3191|consen  122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK  173 (209)
T ss_pred             cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence            2111                   12357777788899999999988766543

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.93  E-value=7.5e-10  Score=84.78  Aligned_cols=120  Identities=19%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             CCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE
Q 026903           86 LTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK  163 (231)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~  163 (231)
                      ...|..-.|.+....+....  ......|+|..||.|..+..++..+..|+++|++|.-+..|+++++-+++.++|+|++
T Consensus        70 ~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~  149 (263)
T KOG2730|consen   70 REGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC  149 (263)
T ss_pred             ccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence            33566666666665555543  2355799999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC-----CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCc
Q 026903          164 ADFFTWCPT-----ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG  207 (231)
Q Consensus       164 ~d~~~~~~~-----~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  207 (231)
                      +|+.+.+..     .-+|+|+.+..+..-  .....-+-.+...++|.|
T Consensus       150 GD~ld~~~~lq~~K~~~~~vf~sppwggp--~y~~~~~~DL~~~~~p~~  196 (263)
T KOG2730|consen  150 GDFLDLASKLKADKIKYDCVFLSPPWGGP--SYLRADVYDLETHLKPMG  196 (263)
T ss_pred             chHHHHHHHHhhhhheeeeeecCCCCCCc--chhhhhhhhhhhhcchhH
Confidence            999994432     235677755433321  222233344445555543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.93  E-value=9.3e-09  Score=83.22  Aligned_cols=87  Identities=11%  Similarity=0.074  Sum_probs=69.7

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..++.... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....   ++++++++|+.+... .
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~   90 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-P   90 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-h
Confidence            455566666543 35589999999999999999998889999999999999999887542   479999999988432 2


Q ss_pred             ceeEEEeCCccc
Q 026903          174 LFDLIFDYTFFC  185 (231)
Q Consensus       174 ~fD~i~~~~~~~  185 (231)
                      .||.|+++..++
T Consensus        91 ~~d~Vv~NlPy~  102 (258)
T PRK14896         91 EFNKVVSNLPYQ  102 (258)
T ss_pred             hceEEEEcCCcc
Confidence            489999876654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.1e-08  Score=78.06  Aligned_cols=106  Identities=20%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             HHHHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCC---------CCCceEEEEcc
Q 026903           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSFLKAD  165 (231)
Q Consensus        99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~---------~~~~i~~~~~d  165 (231)
                      -+.+.....|+.+.||+|+|+|+++..++.    .|..++|||.-++.++.+++++...-         ...++.++.+|
T Consensus        73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD  152 (237)
T KOG1661|consen   73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD  152 (237)
T ss_pred             HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence            334443456889999999999999887774    66667999999999999999875431         12367888999


Q ss_pred             CCCC-CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          166 FFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       166 ~~~~-~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .... ....+||.|++-..-.-        ..+++...|++||.+++.
T Consensus       153 gr~g~~e~a~YDaIhvGAaa~~--------~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  153 GRKGYAEQAPYDAIHVGAAASE--------LPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             ccccCCccCCcceEEEccCccc--------cHHHHHHhhccCCeEEEe
Confidence            9884 44568999998754432        356788889999998874

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.91  E-value=8.5e-09  Score=81.58  Aligned_cols=93  Identities=22%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCccccc
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAI  187 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~~~~  187 (231)
                      ..++||||+|.|..+..++..-.+|+++|.|+.|....+++-        .+++..  .++. .+.+||+|.|.+++..-
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~--~~w~~~~~~fDvIscLNvLDRc  164 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDI--DDWQQTDFKFDVISCLNVLDRC  164 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEeh--hhhhccCCceEEEeehhhhhcc
Confidence            368999999999999999887778999999999987776642        233322  2221 23579999999998765


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .  ....+|+.+++.|+|+|+|++..
T Consensus       165 ~--~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  165 D--RPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             C--CHHHHHHHHHHHhCCCCEEEEEE
Confidence            3  33678999999999999988654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.90  E-value=8.5e-09  Score=84.07  Aligned_cols=86  Identities=15%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..+++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    ++++++++|+.+...+.
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE  103 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence            344556666543 3557999999999999999999878999999999999999987643    47999999999853322


Q ss_pred             c-eeEEEeCCcc
Q 026903          174 L-FDLIFDYTFF  184 (231)
Q Consensus       174 ~-fD~i~~~~~~  184 (231)
                      . ++.|+++..+
T Consensus       104 ~~~~~vv~NlPY  115 (272)
T PRK00274        104 LQPLKVVANLPY  115 (272)
T ss_pred             cCcceEEEeCCc
Confidence            2 5788876543

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.88  E-value=4.2e-08  Score=74.38  Aligned_cols=107  Identities=21%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCC--ceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE--LFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~--~fD~i~~~  181 (231)
                      ..+.++||+.+|+|.++...+++|+ .++.+|.+.+++...++|....+...+..++..|....  ....  .||+|+.-
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            6678999999999999999999987 99999999999999999998887777899999998863  1222  49999976


Q ss_pred             Ccccc-cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCA-IEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..++. +-+....-.+-.-...|+|+|.+++..
T Consensus       122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742         122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            66552 111111112222446799999876643

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.85  E-value=1.4e-08  Score=89.60  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=82.0

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~  183 (231)
                      ...+||||||.|.++..+|.  +...++|+|+....+..+.+.....++ .|+.++..|+..   .++++++|.|+.++.
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            46999999999999999998  667999999999999888777665544 468888887643   556778999997765


Q ss_pred             ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -.|.-..      ....+++.+.+.|+|||.+.+.+
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            4442111      22689999999999999998755

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.85  E-value=7.6e-09  Score=80.10  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=83.2

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC-CCCceEEEEccCCC---CCCCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP-NAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~---~~~~~~fD~i~~~~  182 (231)
                      .+.+|||...|-|+++...+++|+ +|+.+|-++..++.|.-|-...+ ...+|.++.+|..+   .+.+.+||+|+...
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP  213 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP  213 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence            468999999999999999999999 99999999999999876532221 23468999999998   45677899999532


Q ss_pred             c-ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      . |.+...-....+.+++.++|+|||.|+-..=.|
T Consensus       214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P  248 (287)
T COG2521         214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP  248 (287)
T ss_pred             CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence            2 222221233688999999999999996544333

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.85  E-value=3.1e-08  Score=81.01  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C  170 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~  170 (231)
                      +++++.... .++..+||.+||.|..+..+++.   ..+|+|+|.++++++.+++++..   .++++++++|+.+.   .
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence            344454443 45679999999999999999984   36899999999999999988755   35799999999882   2


Q ss_pred             CCC--ceeEEEeC
Q 026903          171 PTE--LFDLIFDY  181 (231)
Q Consensus       171 ~~~--~fD~i~~~  181 (231)
                      +.+  ++|.|++.
T Consensus        85 ~~~~~~vDgIl~D   97 (296)
T PRK00050         85 AEGLGKVDGILLD   97 (296)
T ss_pred             HcCCCccCEEEEC
Confidence            222  68888864

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=3.1e-09  Score=82.06  Aligned_cols=103  Identities=19%  Similarity=0.094  Sum_probs=83.5

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~  187 (231)
                      ..++|||||.|.....+...+. +++-+|.|..+++.++..-. ..  -......+|-+. .+.+.++|+|+++..+|+.
T Consensus        74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~  150 (325)
T KOG2940|consen   74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHWT  150 (325)
T ss_pred             cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence            6999999999999999988776 89999999999999886421 11  124455666555 5667899999999999998


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                        ++++..+.+|...|||+|.++...+..+
T Consensus       151 --NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  151 --NDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             --ccCchHHHHHHHhcCCCccchhHHhccc
Confidence              5677889999999999999987776654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.8e-08  Score=71.41  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=65.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~  183 (231)
                      ...+++++|+|||+|.++...+-++. .|+|+|+++++++.+++|..+..+  ++++.++|+.++. ..+.||..+.+..
T Consensus        46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp  123 (185)
T KOG3420|consen   46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP  123 (185)
T ss_pred             cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence            46789999999999999977766665 899999999999999999988654  4789999999944 3468999998766


Q ss_pred             cc
Q 026903          184 FC  185 (231)
Q Consensus       184 ~~  185 (231)
                      |.
T Consensus       124 FG  125 (185)
T KOG3420|consen  124 FG  125 (185)
T ss_pred             CC
Confidence            54

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.78  E-value=4e-08  Score=79.07  Aligned_cols=100  Identities=26%  Similarity=0.312  Sum_probs=76.2

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc----CC------------------------------
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS----LP------------------------------  154 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~----~~------------------------------  154 (231)
                      +.+||-.|||.|+++..++..|..+.|.|.|--|+-..+-.+..    ..                              
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            46999999999999999999999999999999886544332211    00                              


Q ss_pred             -----CCCceEEEEccCCCCCC-C---CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          155 -----NAKFVSFLKADFFTWCP-T---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       155 -----~~~~i~~~~~d~~~~~~-~---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                           ...++.+..||+.+... .   +.||+|++.+.+.-.  +....+++.+.++|||||+.+
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE
Confidence                 12367788888888433 2   589999987554432  567899999999999999554

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=3.7e-08  Score=84.76  Aligned_cols=103  Identities=22%  Similarity=0.214  Sum_probs=79.9

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----CceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~fD~i~~~~~  183 (231)
                      ++.++||+-||.|.+++.++++..+|+|+|+++++++.|++++..++..+ ++|+.++.++..+.    ..+|.|+....
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP  371 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP  371 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence            45799999999999999999999999999999999999999999988765 99999999994432    47899994322


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      =.-++    ..+++.+ ..++|..++|+++-+.
T Consensus       372 R~G~~----~~~lk~l-~~~~p~~IvYVSCNP~  399 (432)
T COG2265         372 RAGAD----REVLKQL-AKLKPKRIVYVSCNPA  399 (432)
T ss_pred             CCCCC----HHHHHHH-HhcCCCcEEEEeCCHH
Confidence            22221    2344444 4458888888887554

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.78  E-value=1.9e-08  Score=85.54  Aligned_cols=97  Identities=14%  Similarity=0.025  Sum_probs=77.2

Q ss_pred             CCcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCccc
Q 026903          109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~  185 (231)
                      +.+|||++||+|..++.++. .+ ..|+++|+++.+++.+++|+..+++. ++++.++|+..... ...||+|+....  
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~--  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF--  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence            35899999999999999976 33 38999999999999999999877653 46789999877443 467999996432  


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      -.    ...++....+.+++||+|++.
T Consensus       135 Gs----~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 GS----PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CC----cHHHHHHHHHHhcCCCEEEEE
Confidence            11    135778877888999999987

>PRK00536 speE spermidine synthase; Provisional

Probab=98.76  E-value=6.4e-08  Score=77.85  Aligned_cols=97  Identities=14%  Similarity=0.066  Sum_probs=73.4

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      ...+++||-+|.|.|..++.+++...+|+-+|+++++++.+++.+...   -.++|++++.. +.+ ...++||+|+.-.
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs  147 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence            445589999999999999999995459999999999999999955432   12457777652 221 1235899999654


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      .   .+    ..+.+.+.++|+|||+++.
T Consensus       148 ~---~~----~~fy~~~~~~L~~~Gi~v~  169 (262)
T PRK00536        148 E---PD----IHKIDGLKRMLKEDGVFIS  169 (262)
T ss_pred             C---CC----hHHHHHHHHhcCCCcEEEE
Confidence            3   11    4567899999999998876

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.73  E-value=4.9e-08  Score=78.32  Aligned_cols=110  Identities=19%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCC-ceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTE-LFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~-~fD~i  178 (231)
                      ..+++||-||.|.|..+..+++..  .+++.+|+++.+++.|++.+....   .+++++++.+|...+.  ..+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            356899999999999999999833  599999999999999999765421   2468999999998832  223 89999


Q ss_pred             EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +.-..-...+..  ....+++.+.++|+|||++++..-++
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~  194 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP  194 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence            974332111111  12578999999999999998765333

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.71  E-value=1.7e-07  Score=76.20  Aligned_cols=102  Identities=21%  Similarity=0.235  Sum_probs=81.3

Q ss_pred             CcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCC--C-CCceEEEEccCCCCCC--CCceeEEEeCC
Q 026903          110 GRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWCP--TELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~--~~~fD~i~~~~  182 (231)
                      ++||-||.|.|..++.+++..  .+++.+|++++.++.+++.+....  . ++|+.++..|..++..  ..+||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999999999999999944  599999999999999999876543  2 4789999999998432  33799999754


Q ss_pred             cccccCh-H--HHHHHHHHHHhhcCCCcEEEEE
Q 026903          183 FFCAIEP-E--MRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       183 ~~~~~~~-~--~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .-. ..+ +  .-..+++.+.++|+++|++++.
T Consensus       158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            433 111 1  1267899999999999998776

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.71  E-value=1.3e-07  Score=74.66  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=64.6

Q ss_pred             HHHHHHHHcCC--CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHH-HHHHhccCCCCCce-EEEEccCCC--
Q 026903           96 PIIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT--  168 (231)
Q Consensus        96 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~-a~~~~~~~~~~~~i-~~~~~d~~~--  168 (231)
                      ..+..++....  .++.+|||+|||+|.++..+++.|. +|+++|+++.++.. .+++.       ++ .+...|+..  
T Consensus        61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~  133 (228)
T TIGR00478        61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVT  133 (228)
T ss_pred             HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCC
Confidence            33555555543  3567999999999999999999875 89999999977765 33221       22 123333332  


Q ss_pred             ---CCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          169 ---WCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       169 ---~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                         ..+ -..+|++|++..+          .+..+.++|+| |.+++.-
T Consensus       134 ~~~~~~d~~~~DvsfiS~~~----------~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       134 PADIFPDFATFDVSFISLIS----------ILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             HhHcCCCceeeeEEEeehHh----------HHHHHHHHhCc-CeEEEEc
Confidence               111 1257777743332          46788999999 8765543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.71  E-value=5.4e-08  Score=74.41  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=76.7

Q ss_pred             CcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      .+++|+|+|.|.-++.++  .+..+++.+|.+.+-+.+.++.....++. +++++++.+++......||+|+++.+-.. 
T Consensus        50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~l-  127 (184)
T PF02527_consen   50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAPL-  127 (184)
T ss_dssp             SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSSH-
T ss_pred             ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcCH-
Confidence            389999999998777665  47889999999999999988877776654 69999999999555678999999887432 


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                           ..++..+...+++||.+++.
T Consensus       128 -----~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  128 -----DKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             -----HHHHHHHGGGEEEEEEEEEE
T ss_pred             -----HHHHHHHHHhcCCCCEEEEE
Confidence                 46788899999999998764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=2.6e-07  Score=73.87  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..++..... ++..|||||+|.|.++..|++.+..|+++|+++.++...++.....   ++++++++|+.......
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~   92 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPS   92 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchh
Confidence            5557777776643 4589999999999999999999999999999999999999987633   57999999999954433


Q ss_pred             --ceeEEEeCCcccccChHH
Q 026903          174 --LFDLIFDYTFFCAIEPEM  191 (231)
Q Consensus       174 --~fD~i~~~~~~~~~~~~~  191 (231)
                        .++.|+++..++ ++.+.
T Consensus        93 l~~~~~vVaNlPY~-Isspi  111 (259)
T COG0030          93 LAQPYKVVANLPYN-ISSPI  111 (259)
T ss_pred             hcCCCEEEEcCCCc-ccHHH
Confidence              678888765443 44333

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.64  E-value=7.9e-08  Score=76.79  Aligned_cols=114  Identities=18%  Similarity=0.294  Sum_probs=88.3

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~  173 (231)
                      -+....++..... +..++|+|||.|.....-  +...++|+|++...+..++..-.       .....+|+.+ +.+..
T Consensus        33 Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~~~~  102 (293)
T KOG1331|consen   33 WPMVRQFLDSQPT-GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPFREE  102 (293)
T ss_pred             cHHHHHHHhccCC-cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCC-------ceeehhhhhcCCCCCC
Confidence            3456666665433 679999999999765322  55579999999998887765321       1467788888 66778


Q ss_pred             ceeEEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          174 LFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +||..++..++||+.. .-+..+++++.++|+|||..++..|+.+.
T Consensus       103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q  148 (293)
T KOG1331|consen  103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ  148 (293)
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence            9999999999999975 56689999999999999998888876653

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.63  E-value=3.5e-07  Score=72.55  Aligned_cols=87  Identities=23%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ..+..+++.... ++..|||+|.|+|.++..|++.|.+|+++|+++.++....++.+..+...+.+++.+|.....- -.
T Consensus        45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~  123 (315)
T KOG0820|consen   45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PR  123 (315)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cc
Confidence            345556665544 5589999999999999999999999999999999999999999887777889999999998542 25


Q ss_pred             eeEEEeCCc
Q 026903          175 FDLIFDYTF  183 (231)
Q Consensus       175 fD~i~~~~~  183 (231)
                      ||.++++..
T Consensus       124 fd~cVsNlP  132 (315)
T KOG0820|consen  124 FDGCVSNLP  132 (315)
T ss_pred             cceeeccCC
Confidence            899987543

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=3.5e-07  Score=72.50  Aligned_cols=104  Identities=19%  Similarity=0.094  Sum_probs=78.7

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CC
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC  170 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~  170 (231)
                      +..++..+ ..|+.+|||-|.|+|.++.++++   +-.+++.+|+.+...+.|.+.+.+.++.+++++.+-|+-.   ..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            44444444 45678999999999999999988   4458999999999999999999999999999999999988   22


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE  208 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  208 (231)
                      ....+|.|+....-.|       .++-.+...||.+|.
T Consensus       174 ks~~aDaVFLDlPaPw-------~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  174 KSLKADAVFLDLPAPW-------EAIPHAAKILKDEGG  204 (314)
T ss_pred             cccccceEEEcCCChh-------hhhhhhHHHhhhcCc
Confidence            3568999995433222       123444556677664

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.62  E-value=5.8e-07  Score=74.49  Aligned_cols=103  Identities=12%  Similarity=0.001  Sum_probs=77.7

Q ss_pred             CCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCce--EEEEccCCCC---CC----C
Q 026903          108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFV--SFLKADFFTW---CP----T  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i--~~~~~d~~~~---~~----~  172 (231)
                      ++..++|+|||+|.-+..|++      ....++++|+|..+++.+.+++..... +.+  .-+.+|..+.   .+    .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence            345899999999988766554      245899999999999999988762211 234  4488888762   21    2


Q ss_pred             CceeEEEeC-CcccccChHHHHHHHHHHHh-hcCCCcEEEE
Q 026903          173 ELFDLIFDY-TFFCAIEPEMRAAWAQKIKD-FLKPDGELIT  211 (231)
Q Consensus       173 ~~fD~i~~~-~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~  211 (231)
                      ....+++.. .++.+++++....+|+.+++ .|+|||.|++
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            245666665 47899999999999999999 9999998766

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.61  E-value=9.8e-08  Score=80.84  Aligned_cols=97  Identities=13%  Similarity=0.040  Sum_probs=78.8

Q ss_pred             CcEEEecCCCchHHHHhcCC--C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026903          110 GRALVPGCGTGYDVVAMASP--E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~--~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~  184 (231)
                      .+|||+.||+|..++.++..  | .+|+++|+++.+++.+++|+..++.. ++.+++.|+.....  ...||+|+... +
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            58999999999999999985  4 38999999999999999999776543 58899999888432  35799998644 3


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      . .+    ..+++.+.+.+++||.|++..
T Consensus       124 G-s~----~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 G-TP----APFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence            2 21    368899999999999998874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.59  E-value=5e-07  Score=73.69  Aligned_cols=107  Identities=17%  Similarity=0.176  Sum_probs=74.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..+.+|||+|||.|..+..+.+  + -.+++++|.|+.+++.++.............+......+..+-...|+|++.++
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            4557999999999987766655  2 338999999999999999876554311111111111111122224499999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.-++...+..+++.+.+.+++  .|++++..
T Consensus       112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG  141 (274)
T PF09243_consen  112 LNELPSAARAELVRSLWNKTAP--VLVLVEPG  141 (274)
T ss_pred             hhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence            9999888888999999888877  77777643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.57  E-value=7.3e-07  Score=81.84  Aligned_cols=107  Identities=17%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             CCCcEEEecCCCchHHHHhcC------CC--------------------------------------CeEEEEeCChHHH
Q 026903          108 PKGRALVPGCGTGYDVVAMAS------PE--------------------------------------RYVVGLEISDIAI  143 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~------~~--------------------------------------~~v~~iD~s~~~i  143 (231)
                      ++..++|.+||+|.+.+..+.      +|                                      .+++|+|++++++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            458999999999999877753      11                                      2689999999999


Q ss_pred             HHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCcccc-cC-hHHHHHHHHHHHhhcC---CCcEEEEEEc
Q 026903          144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLK---PDGELITLMF  214 (231)
Q Consensus       144 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~~~~~-~~-~~~~~~~l~~~~~~L~---pgG~l~~~~~  214 (231)
                      +.|++|+...++.+.++|.++|+.+...   .++||+|+++..+.. +. ......+.+.+.+.++   +|+.+++.+-
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999999998888889999999988432   246999999976543 22 2333444444444444   8888877654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.55  E-value=7.4e-08  Score=82.63  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEE---eCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGL---EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~i---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      ..+||+|||+|.++..|.+++.....+   |..+..+++|.++.-.    .-+. .-+.-.-+++...||+|.|..++..
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp----a~~~-~~~s~rLPfp~~~fDmvHcsrc~i~  193 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP----AMIG-VLGSQRLPFPSNAFDMVHCSRCLIP  193 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc----hhhh-hhccccccCCccchhhhhccccccc
Confidence            589999999999999999988766555   4445566666655311    1111 1122233788899999999988766


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..+.+ ..+|-++.|+|+|||+++...-+.+
T Consensus       194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             chhcc-cceeehhhhhhccCceEEecCCccc
Confidence            54333 4588999999999999987665544

; GO: 0008168 methyltransferase activity

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.55  E-value=1.1e-06  Score=73.60  Aligned_cols=109  Identities=16%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-----------------------------------------eEEEEeCChHHHH
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIK  144 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-----------------------------------------~v~~iD~s~~~i~  144 (231)
                      ..++..++|.-||+|.+.+..|..+.                                         .++|+|+++.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            34447999999999999988876332                                         3789999999999


Q ss_pred             HHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcccc-cCh-----HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          145 KAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEP-----EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       145 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .|+.|....++.+.|+|.++|+..+.+. +.+|+|+|+..+.- +..     .....+.+.+++.++--+..++++.
T Consensus       269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            9999999999999999999999996655 78999999876532 222     1335666677788888787777654

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.54  E-value=4.3e-07  Score=72.75  Aligned_cols=110  Identities=16%  Similarity=0.057  Sum_probs=73.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCC---------------------------CCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP---------------------------NAK  157 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~---------------------------~~~  157 (231)
                      ...+.++||||||.-.....-+. ...+++..|+.+..++..++-+...+                           ...
T Consensus        54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            34557999999999655433333 34489999999998876665443322                           001


Q ss_pred             ce-EEEEccCCCCC--CC-----CceeEEEeCCcccccC--hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          158 FV-SFLKADFFTWC--PT-----ELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       158 ~i-~~~~~d~~~~~--~~-----~~fD~i~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .| .++.+|+.+..  ..     .+||+|++.++++...  .+.....++++.++|||||.|++...-
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            23 37889998832  22     2499999999988764  367789999999999999999887653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.53  E-value=4.4e-07  Score=70.60  Aligned_cols=114  Identities=22%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhcc-------CCC-CCceEEEE
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS-------LPN-AKFVSFLK  163 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~-------~~~-~~~i~~~~  163 (231)
                      ...+..+++...+ ++...+|+|||.|......+-  ...+.+|||+.+...+.|.+....       .+. ..++++.+
T Consensus        28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~  107 (205)
T PF08123_consen   28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH  107 (205)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred             HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence            3456677776654 458999999999999887775  344699999999988877653322       221 24688999


Q ss_pred             ccCCCCCC----CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          164 ADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       164 ~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +|+.+...    -...|+|++++..  +++ .....|.++...||+|.+++.
T Consensus       108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  108 GDFLDPDFVKDIWSDADVVFVNNTC--FDP-DLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             S-TTTHHHHHHHGHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-TT-EEEE
T ss_pred             cCccccHhHhhhhcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCCCCEEEE
Confidence            99887321    1357999998775  443 444556777788999988764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.53  E-value=3.7e-07  Score=77.10  Aligned_cols=62  Identities=29%  Similarity=0.375  Sum_probs=49.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      ...+..|||+-||.|.+++.|++...+|+|+|.++.+++.|++++..+++ ++++|+.++..+
T Consensus       194 ~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~  255 (352)
T PF05958_consen  194 DLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAED  255 (352)
T ss_dssp             TT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHH
T ss_pred             hcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccc
Confidence            33335899999999999999999999999999999999999999988875 469999877654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.52  E-value=6.8e-07  Score=67.64  Aligned_cols=119  Identities=20%  Similarity=0.253  Sum_probs=87.5

Q ss_pred             cchhhhhccCCCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhcc
Q 026903           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      -+|.-.|..+..          +.+++...  ...+++|||+|+|+|..+...++.|. .|+..|+.+.......-|...
T Consensus        55 pfwa~~WagG~~----------lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a  124 (218)
T COG3897          55 PFWAFAWAGGQV----------LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA  124 (218)
T ss_pred             hHHHHHHhhhHH----------HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh
Confidence            477777765433          23333332  23468999999999999999999887 899999999999988888887


Q ss_pred             CCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       153 ~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +++  .|.|...|..-  .+..||+++...+++.-  +...+++. +.+.|+..|..++
T Consensus       125 ngv--~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         125 NGV--SILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             ccc--eeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence            763  48888888877  44579999998887654  45567777 5555566665443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.52  E-value=5.2e-07  Score=75.04  Aligned_cols=120  Identities=21%  Similarity=0.246  Sum_probs=76.0

Q ss_pred             CcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---------CCCeEEEEeCChHHHHHHHHHhccCCCC-CceEEE
Q 026903           94 PAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFL  162 (231)
Q Consensus        94 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---------~~~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~  162 (231)
                      |.....-+.... ..++.+|+|.+||+|.+...+.+         ...+++|+|+++.++..|+-++.-.+.. ....+.
T Consensus        31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~  110 (311)
T PF02384_consen   31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII  110 (311)
T ss_dssp             -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred             HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence            344433333332 23446899999999999888765         4568999999999999998776544322 234688


Q ss_pred             EccCCCC-C-C-CCceeEEEeCCccccc--C-h----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          163 KADFFTW-C-P-TELFDLIFDYTFFCAI--E-P----------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       163 ~~d~~~~-~-~-~~~fD~i~~~~~~~~~--~-~----------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+|.... . . ...||+|+++..+...  . .                ..--.++..+.+.|++||++.++.
T Consensus       111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il  183 (311)
T PF02384_consen  111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL  183 (311)
T ss_dssp             ES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence            8887762 2 2 4689999998654432  0 0                111358899999999999876654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.51  E-value=1.2e-07  Score=79.71  Aligned_cols=110  Identities=24%  Similarity=0.227  Sum_probs=91.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~  183 (231)
                      ..++..++|+|||.|.....++. .+..++|+|.++..+..+........+..+..+..+|+.+ ++++.+||.+.+..+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            44566899999999999999998 5579999999999888887765555455556677888888 678889999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..|.+  ....+++++.++++|||+.++.++...
T Consensus       188 ~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~  219 (364)
T KOG1269|consen  188 VCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT  219 (364)
T ss_pred             cccCC--cHHHHHHHHhcccCCCceEEeHHHHHh
Confidence            99984  557889999999999999998776543

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.50  E-value=4.8e-07  Score=65.52  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcccccCh---------HHHHHHHHHH
Q 026903          132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI  199 (231)
Q Consensus       132 ~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~~~~~~~---------~~~~~~l~~~  199 (231)
                      +|+++|+.+++++..++++...+..++++++..+..+   ..+.+++|+++.  .+.++|.         +.-.+.++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            5899999999999999999988777789999998887   333458999984  4444543         2336889999


Q ss_pred             HhhcCCCcEEEEEEccC
Q 026903          200 KDFLKPDGELITLMFPI  216 (231)
Q Consensus       200 ~~~L~pgG~l~~~~~~~  216 (231)
                      .++|+|||++.++.|+.
T Consensus        79 l~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHHEEEEEEEEEEE--S
T ss_pred             HHhhccCCEEEEEEeCC
Confidence            99999999999999875

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.49  E-value=5.1e-06  Score=60.99  Aligned_cols=103  Identities=24%  Similarity=0.346  Sum_probs=71.5

Q ss_pred             EEEecCCCchHH--HHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC-CceeEEEeCCccc
Q 026903          112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDLIFDYTFFC  185 (231)
Q Consensus       112 vLDiGcG~G~~~--~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~fD~i~~~~~~~  185 (231)
                      ++|+|||+|...  ..+...+..++++|+++.++..++..... .....+.+...+...   .+.. ..||++......+
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999965  33333335899999999999985554422 111115778877765   2333 3799994444444


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +..   ....+..+.+.++|+|.+++.......
T Consensus       131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            443   567899999999999999888776544

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.49  E-value=4.3e-07  Score=69.56  Aligned_cols=107  Identities=19%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             HHHHHHcCC-C---CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-
Q 026903           98 IVHLHQSGA-L---PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-  169 (231)
Q Consensus        98 ~~~~~~~~~-~---~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-  169 (231)
                      +.++.+... .   ++.+|||+||++|.++..+++.+   .+|+|+|+.+.         ...   ..+.++++|+.+. 
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~   76 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPE   76 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEE
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhh
Confidence            445555543 2   23799999999999999999977   69999999876         110   2466666666551 


Q ss_pred             --------CC--CCceeEEEeCCccccc-----C----hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          170 --------CP--TELFDLIFDYTFFCAI-----E----PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       170 --------~~--~~~fD~i~~~~~~~~~-----~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                              ..  .+.+|+|+|-.....-     +    .+.....+..+...|+|||.+++-.|..
T Consensus        77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence                    11  2589999997632211     1    1233455566668899999999888874

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.48  E-value=5.3e-07  Score=70.27  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=77.9

Q ss_pred             CCcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc-eeEEEeCCccc
Q 026903          109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC  185 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-fD~i~~~~~~~  185 (231)
                      +.+++|||+|.|.-+..++  .+..+|+-+|...+-+.+.++...+.+++ |++++++.+++...... ||+|.++.+-.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAva~  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAVAS  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehccc
Confidence            5799999999999888866  47778999999999999998887776653 69999999999765445 99999887643


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                            ...++..+...+++||.+++
T Consensus       147 ------L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         147 ------LNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             ------hHHHHHHHHHhcccCCcchh
Confidence                  24567778899999888654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.46  E-value=2.7e-06  Score=74.17  Aligned_cols=109  Identities=19%  Similarity=0.130  Sum_probs=82.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEe
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~  180 (231)
                      ..++.+|||++||.|.=+..++.   ....+++.|+++.-++..++++.+.++. ++.+...|...+  .....||.|+.
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEE
Confidence            45678999999999999988887   2248999999999999999999888754 578888887653  22357999994


Q ss_pred             ----CC--cccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 ----YT--FFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ----~~--~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                          +.  ++..       .++       ..+.++|....+.|||||+|+.++-+
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence                32  2222       111       12368899999999999999876643

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.44  E-value=6.1e-07  Score=72.55  Aligned_cols=103  Identities=20%  Similarity=0.324  Sum_probs=65.0

Q ss_pred             CCcEEEecCCC-chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhc-cCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026903          109 KGRALVPGCGT-GYDVVAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~-G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~  182 (231)
                      +.+|+=||||. -..++.+++   .+..|+++|+++++++.+++... ..++..++.|+.+|..+.. .-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            36999999997 455666665   35689999999999999998776 4445678999999998743 235899998654


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ... ++.+.+.+++..+.+.++||+.|++-
T Consensus       201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  201 LVG-MDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence            432 34467789999999999999988764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.43  E-value=1.5e-06  Score=63.78  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=67.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCCCCCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~fD~i  178 (231)
                      .+...|+|+|||.|+++..++.      ++.+|+++|.++..++.+.++.....  ...++.+..++..+.......+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            4457999999999999999987      56799999999999999988776654  345677777777665445677888


Q ss_pred             EeCCcccccChHHHHHHHHHHHh
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKD  201 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~  201 (231)
                      +..+.-..+++    .+|+.+.+
T Consensus       104 vgLHaCG~Ls~----~~l~~~~~  122 (141)
T PF13679_consen  104 VGLHACGDLSD----RALRLFIR  122 (141)
T ss_pred             EEeecccchHH----HHHHHHHH
Confidence            86555544543    34555554

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.39  E-value=1.9e-06  Score=66.55  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             cHHHHHHHHcCCC------CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903           95 APIIVHLHQSGAL------PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus        95 ~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      ...+..++.....      ...++|||||=+..+...-. .-..|+.||+++.                .-.+.+.|+++
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~   94 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFME   94 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeecccc
Confidence            4445555554321      12599999997665544321 2337999999773                23467888888


Q ss_pred             -CCC---CCceeEEEeCCcccccC-hHHHHHHHHHHHhhcCCCcE-----EEEEE
Q 026903          169 -WCP---TELFDLIFDYTFFCAIE-PEMRAAWAQKIKDFLKPDGE-----LITLM  213 (231)
Q Consensus       169 -~~~---~~~fD~i~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~-----l~~~~  213 (231)
                       +.|   .+.||+|.++.++.++| +..+-++++++.+.|+|+|.     |+++.
T Consensus        95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl  149 (219)
T PF11968_consen   95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL  149 (219)
T ss_pred             CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence             333   56899999999999998 57889999999999999999     76654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.38  E-value=1.9e-06  Score=73.85  Aligned_cols=106  Identities=15%  Similarity=0.232  Sum_probs=87.5

Q ss_pred             CCCC-cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903          107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~  183 (231)
                      .+.. ++|-+|||.-.+...+.+-|. .++.+|+|+..++.+.......  .+-+.+...|+.. .++.++||+|+.-..
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt  123 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT  123 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence            3445 999999999999999999887 8999999999999887654322  2458899999999 678889999999988


Q ss_pred             ccccCh--------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEP--------EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ++++..        ..+...+.++.++|++||+.+.+++
T Consensus       124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            887632        2446778999999999999888887

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.35  E-value=3.3e-06  Score=75.24  Aligned_cols=76  Identities=18%  Similarity=0.343  Sum_probs=54.6

Q ss_pred             CCcEEEecCCCchHHHHhcCC--------C--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----C--CC
Q 026903          109 KGRALVPGCGTGYDVVAMASP--------E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----C--PT  172 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~--------~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~  172 (231)
                      ..+|||+|||+|.+...++..        +  .+++|+|+++.++..++.++...+ ...+.+...|....    .  ..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeeccccccccccccccc
Confidence            369999999999999888751        1  478999999999999998876543 11245555553331    1  12


Q ss_pred             CceeEEEeCCccc
Q 026903          173 ELFDLIFDYTFFC  185 (231)
Q Consensus       173 ~~fD~i~~~~~~~  185 (231)
                      +.||+|+++..+.
T Consensus       111 ~~fD~IIgNPPy~  123 (524)
T TIGR02987       111 DLFDIVITNPPYG  123 (524)
T ss_pred             CcccEEEeCCCcc
Confidence            4799999987655

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.33  E-value=4.1e-06  Score=67.12  Aligned_cols=107  Identities=19%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             CcEEEecCCC--chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C----CCcee-
Q 026903          110 GRALVPGCGT--GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P----TELFD-  176 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~----~~~fD-  176 (231)
                      .-.||||||-  -.++-.+++   +..+|+-+|.+|-.+..++..+..... .+..++++|+.++.   .    .+.+| 
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            6899999994  234444544   788999999999999999998766531 23889999999931   1    12233 


Q ss_pred             ----EEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          177 ----LIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       177 ----~i~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                          .++...++||+++ ++...+++.+.+.|.||.+|++++...+
T Consensus       149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence                4667788999976 6778999999999999999999888765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=8.7e-06  Score=62.77  Aligned_cols=109  Identities=16%  Similarity=0.102  Sum_probs=76.6

Q ss_pred             HHHHHHHcC--CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-
Q 026903           97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (231)
Q Consensus        97 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-  170 (231)
                      .+.++.++.  ..++.+|+|+|+..|.++..+++   .+..|+++|+.|-         ...   .++.++++|+++.. 
T Consensus        32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~   99 (205)
T COG0293          32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDT   99 (205)
T ss_pred             HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccH
Confidence            345555554  33568999999999999999987   3335999999764         111   35999999999832 


Q ss_pred             --------CCCceeEEEeCCcc--------cccC-hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          171 --------PTELFDLIFDYTFF--------CAIE-PEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       171 --------~~~~fD~i~~~~~~--------~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                              ...++|+|++-...        +|.- -.....++.....+|+|||.+++-.|-.+
T Consensus       100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence                    23457999976443        2221 12335667777789999999999888654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.32  E-value=1.3e-06  Score=65.77  Aligned_cols=99  Identities=19%  Similarity=0.119  Sum_probs=79.5

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccCh
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP  189 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~  189 (231)
                      ..+.|+|+|+|.++...++...+|++++.+|.....|.+++.-.+ .++++++.+|+.+..- ...|+|+|-..--.+-.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF-ENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc-cccceeHHHHhhHHhhc
Confidence            699999999999999999987799999999999999999974443 3579999999999543 46899998654333323


Q ss_pred             HHHHHHHHHHHhhcCCCcEEE
Q 026903          190 EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +.+...+..+...|+.++.++
T Consensus       112 E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         112 EKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             ccccHHHHHHHHHhhcCCccc
Confidence            445667888888899998875

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.31  E-value=7.1e-06  Score=63.13  Aligned_cols=113  Identities=21%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC  170 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~  170 (231)
                      .+.+.+..+....++++||++|-|-|...-++-+.. ..-+.||..|.+++..++......  .++.+..+-+.+   ..
T Consensus        88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L  165 (271)
T KOG1709|consen   88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL  165 (271)
T ss_pred             hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence            455566555556778999999999999888886633 367889999999999998754433  468888887776   45


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +++.||-|+--..-.+.  ++...+.+.+.++|||+|++-.
T Consensus       166 ~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Sy  204 (271)
T KOG1709|consen  166 PDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSY  204 (271)
T ss_pred             cccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence            67789999843222333  6677788899999999997743

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.27  E-value=1e-05  Score=63.05  Aligned_cols=71  Identities=14%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             EEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026903          112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT  182 (231)
Q Consensus       112 vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~i~~~~  182 (231)
                      |.||||--|++...|++.|.  +++++|+++..++.|++++...++.++++++.+|-.+..+.+ ..|.|+...
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence            68999999999999999876  899999999999999999999988899999999988855444 378888653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.26  E-value=4.5e-07  Score=63.11  Aligned_cols=98  Identities=20%  Similarity=0.165  Sum_probs=43.2

Q ss_pred             EEecCCCchHHHHhcC---CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcc
Q 026903          113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFF  184 (231)
Q Consensus       113 LDiGcG~G~~~~~l~~---~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~~  184 (231)
                      ||+|+..|..+..+++   ..  .+++++|..+. .+..++.+.+.+..++++++.++..+..   +..+||+++.-..-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH   79 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence            6899999999888876   23  27999999995 2233333333334467999999987732   24689999954321


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                         ..+.....+..+.+.|+|||++++-++
T Consensus        80 ---~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   80 ---SYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ---CHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence               124556678899999999999887553

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.24  E-value=7.2e-06  Score=66.55  Aligned_cols=103  Identities=18%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..+++.... ++..|||+|+|.|.++..|++.+.+++++|.++..++..++....   .++++++.+|+..+....
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHH
Confidence            3445566665543 568999999999999999999889999999999999999987753   257999999999954333


Q ss_pred             ----ceeEEEeCCcccccChHHHHHHHHHHHhhcCC
Q 026903          174 ----LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP  205 (231)
Q Consensus       174 ----~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~p  205 (231)
                          ....|+++..+ +++    ..++.++...-+.
T Consensus        93 ~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~  123 (262)
T PF00398_consen   93 LLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF  123 (262)
T ss_dssp             HCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred             hhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence                55667765444 443    3445555543333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.20  E-value=8.9e-06  Score=66.47  Aligned_cols=91  Identities=22%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             HHHHHHcCCCC---CCcEEEecCCCchHH-HHhcC-CCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEcc----CC
Q 026903           98 IVHLHQSGALP---KGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FF  167 (231)
Q Consensus        98 ~~~~~~~~~~~---~~~vLDiGcG~G~~~-~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d----~~  167 (231)
                      +.+++......   .-++||||||..-.- +..++ .+.+++|+|+++..++.|++++..+ .+.++|+++...    ++
T Consensus        89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~  168 (299)
T PF05971_consen   89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF  168 (299)
T ss_dssp             HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred             HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence            55555543211   358999999997442 22222 6889999999999999999999988 788889987653    23


Q ss_pred             C--CCCCCceeEEEeCCcccccC
Q 026903          168 T--WCPTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       168 ~--~~~~~~fD~i~~~~~~~~~~  188 (231)
                      .  ..+.+.||+.+|+..|+.-.
T Consensus       169 ~~i~~~~e~~dftmCNPPFy~s~  191 (299)
T PF05971_consen  169 DGIIQPNERFDFTMCNPPFYSSQ  191 (299)
T ss_dssp             TTSTT--S-EEEEEE-----SS-
T ss_pred             hhhhcccceeeEEecCCccccCh
Confidence            2  12335899999998887643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.18  E-value=2.9e-05  Score=63.84  Aligned_cols=81  Identities=19%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C-
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C-  170 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~-  170 (231)
                      +.+.+.... .+++.++|.=||.|..+..+++.  ..+|+|+|.++.+++.+++++..+  ..++.++++++.+.   . 
T Consensus         9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~   86 (305)
T TIGR00006         9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD   86 (305)
T ss_pred             HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence            344444443 45689999999999999999873  368999999999999999987654  25789999988872   1 


Q ss_pred             --CCCceeEEEe
Q 026903          171 --PTELFDLIFD  180 (231)
Q Consensus       171 --~~~~fD~i~~  180 (231)
                        ...++|.|+.
T Consensus        87 ~~~~~~vDgIl~   98 (305)
T TIGR00006        87 ELLVTKIDGILV   98 (305)
T ss_pred             hcCCCcccEEEE
Confidence              1235777775

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.18  E-value=2.4e-05  Score=64.85  Aligned_cols=106  Identities=16%  Similarity=0.260  Sum_probs=78.0

Q ss_pred             CcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHh--ccC---C-CCCceEEEEccCCCCCC--CCceeEEE
Q 026903          110 GRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWCP--TELFDLIF  179 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~--~~~---~-~~~~i~~~~~d~~~~~~--~~~fD~i~  179 (231)
                      .+||-+|.|.|...+.+.+ ++ .+++-+|.+|++++.++++.  ...   . .+++++++..|.+++..  .+.||+|+
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI  370 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI  370 (508)
T ss_pred             ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence            6999999999999999999 54 49999999999999998532  221   1 24689999999999543  45899998


Q ss_pred             eCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ....-..-+.   -.-..+...+.+.|+++|.+++..=+
T Consensus       371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            5322111000   12256788899999999998875433

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.11  E-value=1.1e-05  Score=66.72  Aligned_cols=69  Identities=20%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~  183 (231)
                      .++.++||+||++|.++..+++.|..|++||..+-.     ..+.   ..++|.....|.+...+ .+.+|.++|-.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            456899999999999999999999999999965421     1111   12578999998888655 678999998665

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=3.1e-05  Score=56.11  Aligned_cols=116  Identities=20%  Similarity=0.206  Sum_probs=86.0

Q ss_pred             cHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-
Q 026903           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-  171 (231)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-  171 (231)
                      ...++..+... ..+.++.+|+|+|.|+.....++.| ...+|+|+++..+.+++-+.-+.+......|..-|+..... 
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~  137 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR  137 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence            34455555544 3344899999999999999999988 48999999999999999888777777888999999988433 


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +-.+-+||  .+-     +....+-.++..-|..+..++..-|+..
T Consensus       138 dy~~vviF--gae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  138 DYRNVVIF--GAE-----SVMPDLEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             ccceEEEe--ehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence            32344444  222     2334455667778889999998888764

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.09  E-value=1.8e-05  Score=60.42  Aligned_cols=104  Identities=19%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCCCCC----CceeE
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPT----ELFDL  177 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~~~~----~~fD~  177 (231)
                      --+.|||||-|.++..|+.  +..-++|.|+-.++.++.++++....      .-.++.+...+...+.+.    ++..-
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk  141 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK  141 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence            5899999999999999998  66689999999999999888765542      123566777776664432    22222


Q ss_pred             EEeCCcccccCh------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          178 IFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       178 i~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+..+.-.|+-.      -....++.+..-+|++||.++..+
T Consensus       142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            221111111100      011578889999999999998765

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=7.6e-05  Score=63.18  Aligned_cols=108  Identities=22%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC-CceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~fD~  177 (231)
                      ..++.+|||+.++.|.=+..++.    .|..|+++|.++.-++..++++.+.++.+ +.....|...   ..+. +.||.
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence            55678999999999988888876    24568999999999999999999987654 6777777654   2222 25999


Q ss_pred             EEeC------Ccccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDY------TFFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~------~~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+.-      .++..       ..+       ..+.++|....+.|||||+|+.++=
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            9963      22211       111       2347899999999999999987663

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.00  E-value=1.9e-06  Score=65.82  Aligned_cols=93  Identities=19%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCcccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCA  186 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~~  186 (231)
                      .+.++||+|+|.|..+..++..-.+|++.|.|..|+...++.-.          -.....+... +-+||+|.|...+..
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~y----------nVl~~~ew~~t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNY----------NVLTEIEWLQTDVKLDLILCLNLLDR  181 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCC----------ceeeehhhhhcCceeehHHHHHHHHh
Confidence            34799999999999999998866689999999999988876321          1111222221 237999998877654


Q ss_pred             cChHHHHHHHHHHHhhcCC-CcEEEEE
Q 026903          187 IEPEMRAAWAQKIKDFLKP-DGELITL  212 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~p-gG~l~~~  212 (231)
                      -  .+.-++|+.+..+|+| +|.+++.
T Consensus       182 c--~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  182 C--FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             h--cChHHHHHHHHHHhccCCCcEEEE
Confidence            3  2336789999999999 8887764

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=3.9e-05  Score=60.15  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=75.2

Q ss_pred             cHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCCCC
Q 026903           95 APIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWC  170 (231)
Q Consensus        95 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~  170 (231)
                      ...+...++..  ..++..+||+|+.||.++..+++.|+ +|+++|..-..+..--+      .++++ .+...|+....
T Consensus        64 ~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~  137 (245)
T COG1189          64 GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLT  137 (245)
T ss_pred             HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCC
Confidence            34455566655  44678999999999999999999987 99999997643332111      22344 44556666644


Q ss_pred             CC---CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PT---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++   +..|+++|--.|.-+     ..+|-.+..+++|++.++..-
T Consensus       138 ~~~~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         138 PEDFTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             HHHcccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEEEe
Confidence            32   367888877666433     567888999999999876543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.96  E-value=7.5e-05  Score=58.13  Aligned_cols=110  Identities=24%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~  180 (231)
                      ++.+||-+|.++|...-.++.   ....|+++|+|+......-......   +||-.+-.|+..+.    .-+..|+|++
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEEe
Confidence            467999999999999888876   4568999999997766555544443   47888999998842    1248999996


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  224 (231)
                      .-.    .+++..-++.++...||+||.+++.--...-+.+.+|
T Consensus       150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p  189 (229)
T PF01269_consen  150 DVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP  189 (229)
T ss_dssp             E-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH
T ss_pred             cCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH
Confidence            433    2355567788888999999999887655443444443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.94  E-value=3.3e-05  Score=56.57  Aligned_cols=57  Identities=19%  Similarity=0.039  Sum_probs=47.1

Q ss_pred             cEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          111 RALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      .+||+|||.|..+..+++.+.  +++++|+++.+.+.++++...++.. ++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999999999988543  7999999999999999998766543 47777776665

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.93  E-value=7.7e-05  Score=59.16  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|+|||||.-=++.....  .+..++|+|++..+++.....+...+  ...++...|+..-.+....|+.+..=+++
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~~~~~~DlaLllK~lp  182 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDPPKEPADLALLLKTLP  182 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence            368999999999888776665  56799999999999999998877665  35778888998876778899999877777


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .+..+.+...+ ++.+.+  +...+++.|+..
T Consensus       183 ~le~q~~g~g~-~ll~~~--~~~~~vVSfPtr  211 (251)
T PF07091_consen  183 CLERQRRGAGL-ELLDAL--RSPHVVVSFPTR  211 (251)
T ss_dssp             HHHHHSTTHHH-HHHHHS--CESEEEEEEES-
T ss_pred             HHHHHhcchHH-HHHHHh--CCCeEEEecccc
Confidence            76433322222 233332  334555566553

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=9.2e-05  Score=64.01  Aligned_cols=101  Identities=22%  Similarity=0.261  Sum_probs=73.5

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC------CceeEEEeCC
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~fD~i~~~~  182 (231)
                      +..++|+-||+|.+++.+++...+|+|+|+++.++..|+.+...++.. |.+|+++-.++.++.      ++-+++..  
T Consensus       384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~i--  460 (534)
T KOG2187|consen  384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAI--  460 (534)
T ss_pred             CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEE--
Confidence            479999999999999999998889999999999999999999888764 699999966663321      12332221  


Q ss_pred             cccccChH---HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 FFCAIEPE---MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                          ++|+   .-.++++.+...=.+--.+++++-..
T Consensus       461 ----iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  461 ----IDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             ----ECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence                1111   11456666666666777777776544

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.85  E-value=8.2e-05  Score=60.50  Aligned_cols=100  Identities=25%  Similarity=0.264  Sum_probs=67.8

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHh---cc-CC------------------------------
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SS-LP------------------------------  154 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~---~~-~~------------------------------  154 (231)
                      +.+||-.|||.|+++..|+..|..+-|=|+|--|+--..=.+   .. +.                              
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            469999999999999999999988888888876653211100   00 00                              


Q ss_pred             -----CCCceEEEEccCCCCCCC----CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          155 -----NAKFVSFLKADFFTWCPT----ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       155 -----~~~~i~~~~~d~~~~~~~----~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                           ......+..||+.+....    +.||+|+..+.+.-.  .....+|+.+...|||||+.+
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEE
Confidence                 001223345666663322    369999987554332  566789999999999999876

>PRK10742 putative methyltransferase; Provisional

Probab=97.83  E-value=0.00015  Score=57.66  Aligned_cols=76  Identities=16%  Similarity=0.076  Sum_probs=62.7

Q ss_pred             cEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------C--CCCceEEEEccCCCCCC--CCceeEEEe
Q 026903          111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWCP--TELFDLIFD  180 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~--~~~~i~~~~~d~~~~~~--~~~fD~i~~  180 (231)
                      +|||+-+|.|..+..++..|..|+++|.++......++++...      .  ...+++++++|..++..  ...||+|+.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence            8999999999999999999999999999999998888877653      1  12468999999888432  347999998


Q ss_pred             CCcccc
Q 026903          181 YTFFCA  186 (231)
Q Consensus       181 ~~~~~~  186 (231)
                      -..|.|
T Consensus       171 DPMfp~  176 (250)
T PRK10742        171 DPMFPH  176 (250)
T ss_pred             CCCCCC
Confidence            766665

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=4e-05  Score=56.41  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=71.7

Q ss_pred             CCCcEEEecCCC-chHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCC---CCCCCceeEEE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT---WCPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~---~~~~~~fD~i~  179 (231)
                      .+.+|||+|.|- |..++.+|.  +...|...|-+++.++..++....+.  .-.++.....++..   .....+||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            347999999995 555566665  55689999999999999888654431  11223222222222   22335899999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      |...+..  ++.+..+++.+..+|+|.|.-++
T Consensus       109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~  138 (201)
T KOG3201|consen  109 AADCLFF--DEHHESLVDTIKSLLRPSGRALL  138 (201)
T ss_pred             eccchhH--HHHHHHHHHHHHHHhCcccceeE
Confidence            9988743  47889999999999999999544

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.72  E-value=0.0015  Score=51.59  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             HHHcCCCCCCcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---Ccee
Q 026903          101 LHQSGALPKGRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD  176 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD  176 (231)
                      +.....+.+++||-+|=..- .++..+.....+|+.+|+++..+++.++...+.++.  |+.+..|+.+++|+   +.||
T Consensus        37 ~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD  114 (243)
T PF01861_consen   37 MAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFD  114 (243)
T ss_dssp             HHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BS
T ss_pred             HHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCC
Confidence            44445678899999995442 233333345669999999999999999988777654  99999999997765   5899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++++....   +.+-..-++.+..+.||..|......|+.
T Consensus       115 ~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~  151 (243)
T PF01861_consen  115 VFFTDPPY---TPEGLKLFLSRGIEALKGEGCAGYFGFTH  151 (243)
T ss_dssp             EEEE---S---SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred             EEEeCCCC---CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence            99976543   23667889999999999888655556654

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.71  E-value=0.00017  Score=59.34  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=53.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------C-CCCcee
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C-PTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~~~fD  176 (231)
                      ..+++.++|.=-|.|..+..+++  ++.+++|+|.++.+++.+++++...  .+++.++++++.+.      . ....+|
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~d   95 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVD   95 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccC
Confidence            45668999999999999999987  4579999999999999999988755  36899999998882      1 224788


Q ss_pred             EEEe
Q 026903          177 LIFD  180 (231)
Q Consensus       177 ~i~~  180 (231)
                      .|+.
T Consensus        96 giL~   99 (310)
T PF01795_consen   96 GILF   99 (310)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.68  E-value=0.00098  Score=54.25  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---  170 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---  170 (231)
                      +.+.+..+ ..+++..+|.=-|.|..+..+++..   .+++++|.++.+++.|++....+.  +++.+++.++.+..   
T Consensus        12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l   89 (314)
T COG0275          12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL   89 (314)
T ss_pred             HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence            34444443 4456899999999999999999833   479999999999999999887754  68999999877721   


Q ss_pred             ---CCCceeEEEe
Q 026903          171 ---PTELFDLIFD  180 (231)
Q Consensus       171 ---~~~~fD~i~~  180 (231)
                         ..+.+|.|+.
T Consensus        90 ~~~~i~~vDGiL~  102 (314)
T COG0275          90 KELGIGKVDGILL  102 (314)
T ss_pred             HhcCCCceeEEEE
Confidence               1235666653

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.67  E-value=0.00043  Score=52.35  Aligned_cols=100  Identities=15%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCC---------CCCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTW---------CPTE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~---------~~~~  173 (231)
                      .|+.+|||+||..|.++....+   +...|.|+|+-.         +...   ..++++.+ |+.++         .|..
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~---~Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPP---EGATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCC---CCcccccccccCCHHHHHHHHHhCCCC
Confidence            4568999999999999988876   455899999832         2111   13566666 66662         3556


Q ss_pred             ceeEEEeCCccccc--ChHHH-------HHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          174 LFDLIFDYTFFCAI--EPEMR-------AAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       174 ~fD~i~~~~~~~~~--~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      ..|+|++-+....-  ...+.       ..++.-....++|+|.+++-.|..++
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e  189 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE  189 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence            89999986543221  11111       23444455678999999999988764

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.66  E-value=0.00024  Score=58.32  Aligned_cols=107  Identities=21%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF  179 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~  179 (231)
                      ..++..|||..++.|.-+..++.   ....+++.|+++.-+...+++..+.+.. ++.....|....   .....||.|+
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence            56678999999999998888877   2358999999999999999998887654 477777777664   2234699999


Q ss_pred             eCC------cccccCh--------------HHHHHHHHHHHhhc----CCCcEEEEEE
Q 026903          180 DYT------FFCAIEP--------------EMRAAWAQKIKDFL----KPDGELITLM  213 (231)
Q Consensus       180 ~~~------~~~~~~~--------------~~~~~~l~~~~~~L----~pgG~l~~~~  213 (231)
                      .-.      ++..-+.              ..+.++|+...+.+    ||||+|+..+
T Consensus       162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            631      2221111              13368999999999    9999988766

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.58  E-value=0.00022  Score=54.22  Aligned_cols=112  Identities=15%  Similarity=0.135  Sum_probs=71.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHH----HH-HhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKA----EE-LSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a----~~-~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      ..++.+|+|+=.|.|+++..++.   +-..|+++-..+...-..    +. .........|.+.+..++....+.+..|+
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~  125 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL  125 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence            34668999999999999999987   222677665443311100    00 01111112245566666666556667777


Q ss_pred             EEeCCcccc-----cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          178 IFDYTFFCA-----IEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       178 i~~~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ++.....|.     +.+....++.+.+.+.|||||++++.++...
T Consensus       126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~  170 (238)
T COG4798         126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD  170 (238)
T ss_pred             cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            776544332     2345667889999999999999999998653

>PRK11524 putative methyltransferase; Provisional

Probab=97.55  E-value=0.00023  Score=58.47  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=52.8

Q ss_pred             CCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026903           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      .|...+++++.....++..|||..||+|..+....+.|.+++|+|++++.++.|++++.
T Consensus       193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            34566788888777888999999999999999999999999999999999999999874

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.54  E-value=0.0012  Score=51.03  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             CCcEEEecCCCchHHHHhcC--CC--CeEEEEeCChHHHHHHHHHhccCC------------------------------
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLP------------------------------  154 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~--~~v~~iD~s~~~i~~a~~~~~~~~------------------------------  154 (231)
                      +-.+.|..||.|++.-.+.-  ..  .+|++.|+++.+++.|++|+.-..                              
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            36999999999998755543  22  389999999999999988876543                              


Q ss_pred             ---------C--CCceEEEEccCCCCC------CCCceeEEEeCCccccc-------ChHHHHHHHHHHHhhcCCCcEEE
Q 026903          155 ---------N--AKFVSFLKADFFTWC------PTELFDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       155 ---------~--~~~i~~~~~d~~~~~------~~~~fD~i~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                               .  .....+.+.|++++.      .....|+|+.-..+.++       +.+-...+|..+..+|.+++++.
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~  211 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA  211 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence                     1  123667888999832      23357999986554443       22445789999999996666666


Q ss_pred             EEEc
Q 026903          211 TLMF  214 (231)
Q Consensus       211 ~~~~  214 (231)
                      +++-
T Consensus       212 v~~k  215 (246)
T PF11599_consen  212 VSDK  215 (246)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            6443

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.48  E-value=0.00021  Score=56.28  Aligned_cols=57  Identities=26%  Similarity=0.364  Sum_probs=45.8

Q ss_pred             CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026903           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE  148 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~  148 (231)
                      ..|...+++++.....++..|||..||+|..+....+.|.+.+|+|++++.++.|++
T Consensus       175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            445666788888777788999999999999999999999999999999999998875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=97.44  E-value=0.00042  Score=54.98  Aligned_cols=61  Identities=21%  Similarity=0.287  Sum_probs=52.7

Q ss_pred             CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026903           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      ..|...++.++.....++..|||..||+|..+....+.|.+++|+|++++..+.+.+++..
T Consensus       147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            3456667778877677889999999999999999999999999999999999999888754

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.39  E-value=0.00035  Score=59.37  Aligned_cols=71  Identities=13%  Similarity=0.032  Sum_probs=58.9

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEe
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFD  180 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~  180 (231)
                      ..|||||.|+|.++...++.|+ .|+++|.-..|.+.|++....++..++|.++.---.+..-  ....|+++.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~  141 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR  141 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence            4899999999999999998776 8999999999999999999999999999998876655322  234666654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.36  E-value=0.003  Score=49.11  Aligned_cols=73  Identities=12%  Similarity=0.009  Sum_probs=63.8

Q ss_pred             CcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026903          110 GRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~  182 (231)
                      .++.|+||--+++...|.+.+  ..+++.|+++..++.|.+++...++.++++...+|..... +++.+|+|+...
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG   93 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG   93 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence            469999999999999999854  4899999999999999999999998899999999998855 444899988654

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=8e-05  Score=54.44  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       169 ~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++.+.+.|+|++.+++.|+.-+....+++.+.+.|||||+|-+..-+.
T Consensus        42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            566789999999999999998888999999999999999998866433

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.35  E-value=0.00053  Score=58.45  Aligned_cols=98  Identities=18%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             CCcEEEecCCCchHHHHhcC--CC-CeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCC--CCCceeEEEeCC
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~--~~~~fD~i~~~~  182 (231)
                      +.+|||.-+|+|.=++..+.  .+ .+|+.-|+|+++++..++|+..+++.+ ++++.+.|+....  ....||+|=   
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID---  126 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID---  126 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence            35999999999977666665  34 489999999999999999998888777 6888888888844  567899996   


Q ss_pred             cccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          183 FFCAIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       183 ~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                          ++| -....+|+...+.++.||.|.+..
T Consensus       127 ----lDPfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  127 ----LDPFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             ----E--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----eCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence                332 223568999999999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.34  E-value=0.0011  Score=51.31  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------  170 (231)
                      ..++..|+|+|.-.|.-+..+|+      ...+|+|+|++......  +....++..++|+++++|..++.         
T Consensus        30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~  107 (206)
T PF04989_consen   30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELA  107 (206)
T ss_dssp             HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred             HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence            34568999999999988877765      33599999996443222  22333445578999999988721         


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ......+|+.-..-.|   +...+.|+.+..++++|+++++.+
T Consensus       108 ~~~~~vlVilDs~H~~---~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  108 SPPHPVLVILDSSHTH---EHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             ---SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             ccCCceEEEECCCccH---HHHHHHHHHhCccCCCCCEEEEEe
Confidence            1123445553222111   222456788999999999998855

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.0043  Score=47.67  Aligned_cols=110  Identities=18%  Similarity=0.201  Sum_probs=79.6

Q ss_pred             CCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~  181 (231)
                      ++.+||=+|+.+|...-.++. - ...++++|+|+......-..+.+.   +|+-.+..|+..+..    -+..|+|+.-
T Consensus        76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEEe
Confidence            458999999999998888877 2 247999999999876665555443   468888888887431    2468999853


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  224 (231)
                      -+    .+++..-+..+....||+||.+++.--..+-+.+..|
T Consensus       153 VA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp  191 (231)
T COG1889         153 VA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP  191 (231)
T ss_pred             cC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence            22    2355566778889999999988776665555555544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.33  E-value=0.0009  Score=55.82  Aligned_cols=95  Identities=21%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             CCCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026903          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~  181 (231)
                      ..|+.+|+-+|+| .|..+.++++ .|++|+++|.+++-.+.|++....       .++...-.+...  .+.||+|+..
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEEC
Confidence            4567899999988 3577788888 889999999999999999986532       334433111111  1249999965


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .. .        ..+....+.|++||.++++..++
T Consensus       237 v~-~--------~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         237 VG-P--------ATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             CC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence            44 2        23677889999999999999885

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.14  E-value=0.0026  Score=51.58  Aligned_cols=106  Identities=22%  Similarity=0.209  Sum_probs=78.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCC---CCCCceeEEE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW---CPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~---~~~~~fD~i~  179 (231)
                      .+++||-||.|.|.+.+..++.  -.++.-+|++...++..++......   -.+++.+.-||-..+   ...++||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            4589999999999999888873  2389999999999998887654321   235788888887773   3467999999


Q ss_pred             eCCcccccCh--HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          180 DYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       180 ~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-..=.-.+.  -....+...+.+.||+||+++...
T Consensus       201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            6432221221  234678889999999999988744

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.13  E-value=0.0033  Score=50.19  Aligned_cols=103  Identities=17%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             CCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhcc-----CCCCCceEEEEccCCCCC----CCCc-eeE
Q 026903          109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFTWC----PTEL-FDL  177 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~-----~~~~~~i~~~~~d~~~~~----~~~~-fD~  177 (231)
                      ..+|||+|+|+|..+..++. .+.+|+..|.... +.....+...     .+....+.....++.+..    .... +|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            45799999999988888877 6778988887543 3333332111     112224555555555522    1223 999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+++.++++.  +....++..++..|..+|.+++..+
T Consensus       166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEe
Confidence            9999888664  4556678888888999995554443

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.00066  Score=56.24  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i  178 (231)
                      ...+.+|||+|.|.|.-+..+..  +.. .++.++.|+..-+.......... .....+...|+..    ..+.+.|+++
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehh
Confidence            34567899999999988777665  333 67788888876555444322111 1122233333333    3445678887


Q ss_pred             EeCCcccccC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +...-+-+.. ......+++.+..+++|||.|++++-..
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            7554443322 1233458999999999999999987543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.06  E-value=0.0078  Score=53.27  Aligned_cols=120  Identities=20%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             CcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC----C--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC
Q 026903           94 PAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF  166 (231)
Q Consensus        94 ~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~----~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~  166 (231)
                      |+....-++..... +..+|+|..||+|.+.....+    .  ...++|.|.++.....|+.++--++....+....+|-
T Consensus       171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt  250 (489)
T COG0286         171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT  250 (489)
T ss_pred             hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence            44444444443322 447999999999988776655    2  2569999999999999999987776543345555555


Q ss_pred             CC-CCC-----CCceeEEEeCCccc---c------------------cCh--HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          167 FT-WCP-----TELFDLIFDYTFFC---A------------------IEP--EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       167 ~~-~~~-----~~~fD~i~~~~~~~---~------------------~~~--~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .. +..     ...||+|+++..+.   +                  +++  ..-..+++.+...|+|||+..++.
T Consensus       251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            44 222     24799999876553   0                  000  122689999999999998655443

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.02  E-value=0.0012  Score=54.64  Aligned_cols=108  Identities=20%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHH-------HHHhccCCCCC-ceEEEEccCCCC--CCCCce
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA-------EELSSSLPNAK-FVSFLKADFFTW--CPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a-------~~~~~~~~~~~-~i~~~~~d~~~~--~~~~~f  175 (231)
                      ..++..|+|..-|||.+....+..|+.|+|.|++-.++...       +.|+..++..+ -+.+..+|..++  -....|
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            45778999999999999999999999999999999888732       34555555333 356778888873  235589


Q ss_pred             eEEEeCCccc------------------------ccCh-------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFC------------------------AIEP-------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~------------------------~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |.|+|-..+.                        |.|.       ...-.+|.-..+.|..||+|++..
T Consensus       286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~  354 (421)
T KOG2671|consen  286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL  354 (421)
T ss_pred             eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence            9999853221                        2211       122466777889999999997643

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.98  E-value=0.0082  Score=50.48  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CcEEEecCCCchHHHHhcC------------CC------CeEEEEeCChHHHHHHHH-------HhccCCCCCceEEEEc
Q 026903          110 GRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEE-------LSSSLPNAKFVSFLKA  164 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------------~~------~~v~~iD~s~~~i~~a~~-------~~~~~~~~~~i~~~~~  164 (231)
                      -+|+|+||..|.+++.+..            .+      .+|+.-|+-..=....-+       .....+ .--+.-+.+
T Consensus        18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~gvpg   96 (334)
T PF03492_consen   18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVSGVPG   96 (334)
T ss_dssp             EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEEEEES
T ss_pred             eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEEecCc
Confidence            6999999999999877753            12      378888865432221111       111110 011334567


Q ss_pred             cCCC-CCCCCceeEEEeCCcccccCh--------------------------H-----------HHHHHHHHHHhhcCCC
Q 026903          165 DFFT-WCPTELFDLIFDYTFFCAIEP--------------------------E-----------MRAAWAQKIKDFLKPD  206 (231)
Q Consensus       165 d~~~-~~~~~~fD~i~~~~~~~~~~~--------------------------~-----------~~~~~l~~~~~~L~pg  206 (231)
                      .+.+ .+|.++.|++++..++||++.                          +           +...+|+.=++=|+||
T Consensus        97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G  176 (334)
T PF03492_consen   97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG  176 (334)
T ss_dssp             -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            7777 788899999999999998641                          0           1133444444578999


Q ss_pred             cEEEEEEccCCC
Q 026903          207 GELITLMFPISD  218 (231)
Q Consensus       207 G~l~~~~~~~~~  218 (231)
                      |++++.....+.
T Consensus       177 G~mvl~~~gr~~  188 (334)
T PF03492_consen  177 GRMVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEEEE-ST
T ss_pred             cEEEEEEeeccc
Confidence            999887776554

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.95  E-value=0.00051  Score=55.63  Aligned_cols=99  Identities=13%  Similarity=-0.008  Sum_probs=74.1

Q ss_pred             CCcEEEecCCCchHHH-HhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~-~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      +..|.|+=+|-|++++ ++...|+ .|+++|.+|..++..+.+++.+.+.++..+..+|-..+.+....|-|....    
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL----  270 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL----  270 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc----
Confidence            4799999999999999 7777776 899999999999999999988887778888888888888778888887432    


Q ss_pred             cChHHHHHHHHHHHhhcCCCc--EEEEEE
Q 026903          187 IEPEMRAAWAQKIKDFLKPDG--ELITLM  213 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG--~l~~~~  213 (231)
                      +|-.  ++-.-...++|+|.|  ++.|.+
T Consensus       271 lPSs--e~~W~~A~k~Lk~eggsilHIHe  297 (351)
T KOG1227|consen  271 LPSS--EQGWPTAIKALKPEGGSILHIHE  297 (351)
T ss_pred             cccc--ccchHHHHHHhhhcCCcEEEEec
Confidence            2211  122334556666654  454443

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.92  E-value=0.03  Score=45.45  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=75.2

Q ss_pred             CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCC-C--------CCCCceeE
Q 026903          110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT-W--------CPTELFDL  177 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~-~--------~~~~~fD~  177 (231)
                      ..|+.+|||--.-...+..+ +.+++=+|. |+.++.-++.+...+  ...+.+++..|+.+ +        +.....-+
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl  161 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA  161 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence            57999999987666666543 445666665 556666556555422  23568889999863 1        11234567


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++-.++.+++++...++++.+.+...||+.|++....+
T Consensus       162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            888899999999999999999999988999887755443

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.90  E-value=0.0013  Score=51.94  Aligned_cols=77  Identities=22%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH---HhccCCC-----CCceEEEEccCCCCC--CCCceeEEE
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE---LSSSLPN-----AKFVSFLKADFFTWC--PTELFDLIF  179 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~---~~~~~~~-----~~~i~~~~~d~~~~~--~~~~fD~i~  179 (231)
                      .+|||.=+|-|..+..++..|.+|+++|-||-.....+.   +......     ..+|+++++|..++.  +..+||+|+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY  156 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY  156 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence            499999999999999999889999999999987655443   2222111     137999999999954  356999999


Q ss_pred             eCCcccc
Q 026903          180 DYTFFCA  186 (231)
Q Consensus       180 ~~~~~~~  186 (231)
                      .-..|.+
T Consensus       157 ~DPMFp~  163 (234)
T PF04445_consen  157 FDPMFPE  163 (234)
T ss_dssp             E--S---
T ss_pred             ECCCCCC
Confidence            8776665

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PHA01634 hypothetical protein

Probab=96.90  E-value=0.003  Score=44.75  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP  154 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~  154 (231)
                      ...+++|+|||.+.|.-++.++-.|+ .|+++|.++...+..+++...+.
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            45678999999999999999999887 89999999999999999876553

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.87  E-value=0.0056  Score=48.01  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             HHHHHHHHcC--CC--CCCcEEEecCCCchHHHHhc---CCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCC
Q 026903           96 PIIVHLHQSG--AL--PKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFF  167 (231)
Q Consensus        96 ~~~~~~~~~~--~~--~~~~vLDiGcG~G~~~~~l~---~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~  167 (231)
                      +.+.+++...  ..  ++.++||||.|..- .+.|.   +.|.+.+|.|+++..++.|+..+..+ ++...|+.....-.
T Consensus        62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~  140 (292)
T COG3129          62 HHLADLLASTSGQIPGKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS  140 (292)
T ss_pred             HHHHHHHHhcCCCCCcCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCc
Confidence            3355555543  12  34699999998742 33333   37889999999999999999988776 44445666544322


Q ss_pred             C-CC-----CCCceeEEEeCCccccc
Q 026903          168 T-WC-----PTELFDLIFDYTFFCAI  187 (231)
Q Consensus       168 ~-~~-----~~~~fD~i~~~~~~~~~  187 (231)
                      . .+     ..+.||+.+|+..||.-
T Consensus       141 ~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         141 DAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             cccccccccccceeeeEecCCCcchh
Confidence            2 22     24689999999988753

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.82  E-value=0.011  Score=50.49  Aligned_cols=109  Identities=14%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCcEEEecCCCchHHHHhcC-----------------CCCeEEEEeCChHHHHHHHHHhccC--------C----CCCc-
Q 026903          109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSL--------P----NAKF-  158 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~~iD~s~~~i~~a~~~~~~~--------~----~~~~-  158 (231)
                      ..+|+|+|||+|.+++.+..                 +..+|..-|....=....-+.+...        .    ...+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            46999999999988766632                 1246776675433222111111100        0    0001 


Q ss_pred             --eEEEEccCCC-CCCCCceeEEEeCCcccccCh--H----------------------------------HHHHHHHHH
Q 026903          159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP--E----------------------------------MRAAWAQKI  199 (231)
Q Consensus       159 --i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~--~----------------------------------~~~~~l~~~  199 (231)
                        +.-+.+.+.. .+|.++.+++++...+||++.  +                                  +...+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              1223345555 778899999999999999752  1                                  123344444


Q ss_pred             HhhcCCCcEEEEEEccCC
Q 026903          200 KDFLKPDGELITLMFPIS  217 (231)
Q Consensus       200 ~~~L~pgG~l~~~~~~~~  217 (231)
                      ++-|.|||++++......
T Consensus       224 a~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             HHHhccCcEEEEEEecCC
Confidence            567899999988776664

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.80  E-value=0.012  Score=52.15  Aligned_cols=98  Identities=18%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----------C----
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------W----  169 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----------~----  169 (231)
                      .++.+|+-+|||. |..+...++ .|..|+++|.+++.++.+++.-.        ++...|..+           .    
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA--------~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA--------EFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC--------eEEEeccccccccccchhhhcchhH
Confidence            3578999999997 777777777 78899999999999998887321        221111100           0    


Q ss_pred             -------CCC--CceeEEEeCCcccccChHHHHHH-HHHHHhhcCCCcEEEEEEcc
Q 026903          170 -------CPT--ELFDLIFDYTFFCAIEPEMRAAW-AQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       170 -------~~~--~~fD~i~~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~l~~~~~~  215 (231)
                             +.+  ..+|+|+.......-+   .+.+ .++..+.+||||+++.+..+
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg~~---aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPGKP---APKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCccc---CcchHHHHHHHhcCCCCEEEEEccC
Confidence                   011  3699999765432211   1233 48899999999998877664

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.71  E-value=0.016  Score=49.40  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=77.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i  178 (231)
                      ..++.+|||..+..|.=+..+|.   .-..|++.|.+..-+...+.++.+.++. +......|..++    ++. +||-|
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~fDRV  316 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SFDRV  316 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cccee
Confidence            45668999999999977776665   3347999999999999999998888754 345566666542    333 89999


Q ss_pred             EeC----C--ccccc-----C---------hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDY----T--FFCAI-----E---------PEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~----~--~~~~~-----~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.-    .  +..--     .         ...+.++|....+++++||+|+.++=+
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            843    2  11110     0         023468888999999999999876643

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.70  E-value=0.0048  Score=53.85  Aligned_cols=104  Identities=22%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             CcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCC
Q 026903          110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~  182 (231)
                      ..|+-+|+|-|=+.....+      +..+++++|-+|.++...+. .....+..+++++..|+..+.++ ++.|++++-.
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL  447 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSEL  447 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence            4789999999966544433      44589999999999887765 33334567899999999997764 8999998743


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .-..-+.+.-++-|.-+...|||+|+-+=..|
T Consensus       448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  448 LGSFGDNELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             hccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence            22211222334457888899999997664443

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.013  Score=49.13  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             HHHHcCCCC-CCcEEEecCCCchHHHHhcC----------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          100 HLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       100 ~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~----------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      ..+.+...| +-.++|+|.|.|.++..+++          ...++..||+|++....-+++++...    -.+....+.+
T Consensus        68 ~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~----~~~~~~~~~e  143 (370)
T COG1565          68 QLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE----DLIRWVEWVE  143 (370)
T ss_pred             HHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc----cchhHHHHHH
Confidence            333344444 46899999999999988876          24589999999999999998886643    1223333444


Q ss_pred             CCCCCceeEEEeCCcccccC
Q 026903          169 WCPTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       169 ~~~~~~fD~i~~~~~~~~~~  188 (231)
                      ..|..-.-+|+++-.+..+|
T Consensus       144 ~~p~~~~~i~~~NElfDAlP  163 (370)
T COG1565         144 DLPKKFPGIVVSNELFDALP  163 (370)
T ss_pred             hccccCceEEEechhhcccc
Confidence            44444466777777777775

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.65  E-value=0.0049  Score=52.21  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CC----CCCCCCceeEEE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FF----TWCPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~----~~~~~~~fD~i~  179 (231)
                      ++.+|+-+|||. |..+..+++ .|. +|+.+|.++.-++.|++.....    .+.....+ ..    +......+|+++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence            335899999998 888877777 554 8999999999999999855321    11111111 11    111123699999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      -...  .      ...+..+.++++|||.+.+.......
T Consensus       244 e~~G--~------~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         244 EAVG--S------PPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             ECCC--C------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            5444  1      23688899999999999988877644

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.0018  Score=56.03  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i  178 (231)
                      .++.+|||.-|++|.-++..++  .|. .|++-|.++.+++..+++...++..+.++....|+..     ......||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            3457999999999998888887  444 8999999999999999999888766667777777666     2234689998


Q ss_pred             EeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      =       ++| -....||+...+.++.||.|++..
T Consensus       188 D-------LDPyGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  188 D-------LDPYGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             e-------cCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence            6       332 122468999999999999998865

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.46  E-value=0.0017  Score=44.55  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCeEEEEeCChH
Q 026903          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDI  141 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~  141 (231)
                      .....|+|||.|.+...|.+.|+.-+|+|.-..
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R   91 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR   91 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence            469999999999999999999999999998543

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.44  E-value=0.0051  Score=53.49  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             CcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026903          110 GRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~~  184 (231)
                      ..|+|..+|.|.++..|.....   +|+-++ .+..+...-+    .++   | -.-.|+-+.+  .+.+||+|.+..+|
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIyd----RGL---I-G~yhDWCE~fsTYPRTYDLlHA~~lf  437 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYD----RGL---I-GVYHDWCEAFSTYPRTYDLLHADGLF  437 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhh----ccc---c-hhccchhhccCCCCcchhheehhhhh
Confidence            5999999999999999988543   333331 2222222221    111   1 1234555533  34689999999888


Q ss_pred             cccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..... -....++-++-|.|+|+|.+++-+
T Consensus       438 s~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            77533 456788999999999999998854

; GO: 0008168 methyltransferase activity

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.36  E-value=0.023  Score=47.80  Aligned_cols=97  Identities=19%  Similarity=0.253  Sum_probs=61.6

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~  182 (231)
                      .++.+||-.|||. |..+..+++ .|. +|+++|.+++.++.+++.-...-    +.....++.+.. ..+.+|+|+...
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v----i~~~~~~~~~~~~~~g~~D~vid~~  243 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL----VNPQNDDLDHYKAEKGYFDVSFEVS  243 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE----ecCCcccHHHHhccCCCCCEEEECC
Confidence            4567899999875 667777776 676 69999999999998877421110    111111121211 123589998542


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .-        ...+....++|++||.++.....
T Consensus       244 G~--------~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        244 GH--------PSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence            21        13467788899999999887654

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.31  E-value=0.013  Score=47.94  Aligned_cols=65  Identities=17%  Similarity=0.053  Sum_probs=51.5

Q ss_pred             cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCC
Q 026903          111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYT  182 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~  182 (231)
                      +++|+.||.|.....+...|. .+.++|+++.+++..+.+....       ++.+|+.+...   ...+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCC
Confidence            799999999999999988887 5788999999999998887421       55677777432   24699999764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.20  E-value=0.033  Score=44.93  Aligned_cols=43  Identities=21%  Similarity=0.090  Sum_probs=34.8

Q ss_pred             CcEEEecCCCchHHHHhcC----------CCCeEEEEeCChHHHHHHHHHhcc
Q 026903          110 GRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~----------~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      .+|+|+|+|+|.++..+++          ...+++.+|+|+.+.+..++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            6999999999999988875          124899999999999988888765

; PDB: 4F3N_A 1ZKD_B.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.071  Score=42.43  Aligned_cols=102  Identities=14%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             CCcEEEecCCCchHHHHhcC----CCC--eEEEEeCChHHHHHHH-HHhccCCCCCceEEEEccCCCC---CCCC-ceeE
Q 026903          109 KGRALVPGCGTGYDVVAMAS----PER--YVVGLEISDIAIKKAE-ELSSSLPNAKFVSFLKADFFTW---CPTE-LFDL  177 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~----~~~--~v~~iD~s~~~i~~a~-~~~~~~~~~~~i~~~~~d~~~~---~~~~-~fD~  177 (231)
                      +...+|+|+|+..-+..|..    .|.  +++.+|++...+.... .....++. -.+.-+.+|....   .+.. .==.
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~La~~~~~~~Rl~  157 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELALAELPRGGRRLF  157 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHHhcccCCCeEEE
Confidence            47999999999877766654    443  8999999999887644 34444431 1255566776662   2222 2223


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ++....+.+++|+....++..+...|.||-++++
T Consensus       158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             EEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            4445678899999999999999999999998776

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=96.09  E-value=0.074  Score=40.67  Aligned_cols=106  Identities=14%  Similarity=0.059  Sum_probs=73.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------  171 (231)
                      .+.+..|+|+|.--|.-++.+|.    .|  .+|+++|++-...+-+...      .++|.|+.++-.++..        
T Consensus        67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~  140 (237)
T COG3510          67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLK  140 (237)
T ss_pred             hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHh
Confidence            45668999999999988877775    45  6999999987765443322      2579999999888431        


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      .+.--+.+|...-|+.  +..-+.|+.+..+|..|-++++.+-.-++.
T Consensus       141 ~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dl  186 (237)
T COG3510         141 NEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDL  186 (237)
T ss_pred             cCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence            2222444454555554  444567888899999999998876544443

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.09  E-value=0.0041  Score=43.02  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             ceeEEEeCCcc--ccc--ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          174 LFDLIFDYTFF--CAI--EPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       174 ~fD~i~~~~~~--~~~--~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .||+|+|..+.  .|+  .++-...+++++.+.|+|||.|++.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            49999998874  344  2466788999999999999999774

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.04  E-value=0.016  Score=47.70  Aligned_cols=110  Identities=22%  Similarity=0.265  Sum_probs=73.1

Q ss_pred             CcEEEecCCCchHHHHhcC--------------CC--------CeEEEEeCChHH--HHHHHHHhccC------------
Q 026903          110 GRALVPGCGTGYDVVAMAS--------------PE--------RYVVGLEISDIA--IKKAEELSSSL------------  153 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--------------~~--------~~v~~iD~s~~~--i~~a~~~~~~~------------  153 (231)
                      .+||.||.|.|.-...++.              .+        .+++.+|+.+..  ++.....+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            6999999999877666543              01        389999998763  44444433322            


Q ss_pred             ----CCCCceEEEEccCCCCCCCC--------ceeEEEeCCccccc---ChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          154 ----PNAKFVSFLKADFFTWCPTE--------LFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       154 ----~~~~~i~~~~~d~~~~~~~~--------~fD~i~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                          ...-++.|.+.|+.....++        ..++|...++++-+   ....-.++|.++...++||..|+|++-+.++
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY  247 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY  247 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence                01125789999998854321        35666554444322   1234478999999999999999999977764


Q ss_pred             C
Q 026903          219 H  219 (231)
Q Consensus       219 ~  219 (231)
                      .
T Consensus       248 S  248 (315)
T PF11312_consen  248 S  248 (315)
T ss_pred             h
Confidence            3

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.02  E-value=0.03  Score=44.27  Aligned_cols=107  Identities=21%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHH----HHHHHHHhccCCCCCceEEEEccCCCCCC----CCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIA----IKKAEELSSSLPNAKFVSFLKADFFTWCP----TELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~----i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~f  175 (231)
                      .|+.+||=+|+++|...-.+..   +..-|+++|.|+..    +..|+++       .||-.+.-|+..+..    -.-.
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgmV  227 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGMV  227 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeeeE
Confidence            4568999999999988877766   44579999999864    3333332       367777777777431    1257


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  224 (231)
                      |+||+.-.    .|++...+.-+....||+||.+++.-...--+++-++
T Consensus       228 DvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikancidstv~a  272 (317)
T KOG1596|consen  228 DVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFA  272 (317)
T ss_pred             EEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccccccH
Confidence            77774221    1233334445667889999999887766655544443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.90  E-value=0.023  Score=46.93  Aligned_cols=99  Identities=13%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-----CC----CCCCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-----FT----WCPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-----~~----~~~~~~  174 (231)
                      .++.+||-+|+|. |..+...|+ .|+ +|+.+|+++..++.|++ +...    .+.......     .+    ..-...
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~----~~~~~~~~~~~~~~~~~v~~~~g~~~  242 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT----VTDPSSHKSSPQELAELVEKALGKKQ  242 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe----EEeeccccccHHHHHHHHHhhccccC
Confidence            3568999999998 777777777 665 99999999999999999 4321    122222111     11    111235


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +|+.|.....+        .-++.....++.||.+++..+..+.
T Consensus       243 ~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~  278 (354)
T KOG0024|consen  243 PDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE  278 (354)
T ss_pred             CCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence            88888655443        2356678899999998888876643

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.83  E-value=0.037  Score=44.39  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             CCcEEEecCCCchHHHHhcC-------CCCeEEEEeCCh--------------------------HHHHHHHHHhccCCC
Q 026903          109 KGRALVPGCGTGYDVVAMAS-------PERYVVGLEISD--------------------------IAIKKAEELSSSLPN  155 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~-------~~~~v~~iD~s~--------------------------~~i~~a~~~~~~~~~  155 (231)
                      ++.|+|.||-.|..+..++.       .+.+++++|.-+                          ...+..++++...++
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            48999999999987765432       234788877422                          134445556655543


Q ss_pred             -CCceEEEEccCCCCCCCCceeEEEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          156 -AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       156 -~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                       .+++.++.|.+.+..+..+.+-|    ++-|++-   +.-...|..+...|.|||++++-+|..
T Consensus       155 ~~~~v~~vkG~F~dTLp~~p~~~I----All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDAPIERI----ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC-TT--E----EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             CcccEEEECCcchhhhccCCCccE----EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence             45899999999885443222211    2333432   344678899999999999999988764

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.83  E-value=0.0026  Score=51.40  Aligned_cols=107  Identities=18%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHH-HHhcc--------CCCCCceEEEEc---cCCCCCCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSSS--------LPNAKFVSFLKA---DFFTWCPT  172 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~-~~~~~--------~~~~~~i~~~~~---d~~~~~~~  172 (231)
                      ...+++|||+|||+|...+.....+ ..+...|++.+.++.-. .+...        .....-..+..-   |+.-....
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~  193 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE  193 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence            4567899999999999988888777 58999999998873211 00000        000000112222   22111111


Q ss_pred             -CceeEEEeCCcccccChHHHHHH-HHHHHhhcCCCcEEEEEEc
Q 026903          173 -ELFDLIFDYTFFCAIEPEMRAAW-AQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 -~~fD~i~~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~l~~~~~  214 (231)
                       ..||+|.+.-.++..+.  ...+ +.....+++++|++++..-
T Consensus       194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~aAK  235 (282)
T KOG2920|consen  194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVAAK  235 (282)
T ss_pred             ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhhhH
Confidence             27899988777665533  2233 5667778899998877553

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.82  E-value=0.03  Score=46.99  Aligned_cols=98  Identities=19%  Similarity=0.077  Sum_probs=71.7

Q ss_pred             CCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcc
Q 026903          109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF  184 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~  184 (231)
                      ..+|+|.-+|+|.=++..+. .+. +++.-|+||.+++.+++|+..+.. .+...++.|.......  ..||+|=. ..|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence            57999999999977777765 444 899999999999999999987732 2355666666664333  67888842 222


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .     ....+++...+.++.||+|.+..
T Consensus       131 G-----SPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         131 G-----SPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             C-----CCchHHHHHHHHhhcCCEEEEEe
Confidence            1     11357888889999999987754

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.81  E-value=0.026  Score=48.35  Aligned_cols=103  Identities=15%  Similarity=0.125  Sum_probs=65.8

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CCC----CCCCCceeEEE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~----~~~~~~fD~i~  179 (231)
                      ++.+||..|||. |..+..+++ .|. +++++|.+++..+.+++....    ..+.....+ +..    ......+|+|+
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~vl  259 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVCI  259 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence            457999999988 888888887 665 699999999999988875311    111111111 111    22234699998


Q ss_pred             eCCccc-------cc------ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          180 DYTFFC-------AI------EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       180 ~~~~~~-------~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....-.       ++      +..+....+..+.++|+++|.++....
T Consensus       260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            743111       11      111224567888999999999987653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.75  E-value=0.0056  Score=43.74  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeEEEeCCcccccCh
Q 026903          118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDLIFDYTFFCAIEP  189 (231)
Q Consensus       118 G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~i~~~~~~~~~~~  189 (231)
                      |.|..+..+++ .|.+|+++|.++.-.+.+++....       .++..+-.+       ......+|+|+....-     
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-----   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-----   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------ccccccccccccccccccccccceEEEEecCc-----
Confidence            35778888887 789999999999999999875421       233332221       2333579999954331     


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          190 EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                         ...++....+|+++|.++++....
T Consensus        69 ---~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 ---GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ---HHHHHHHHHHhccCCEEEEEEccC
Confidence               246788999999999999988766

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=95.71  E-value=0.026  Score=48.21  Aligned_cols=60  Identities=13%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             CceEEEEccCCCC---CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          157 KFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       157 ~~i~~~~~d~~~~---~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++++..+++.+.   .+++++|.++....+.+++++...+.++.+.+.++|||++++-....
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            6899999999993   35789999999999999999999999999999999999999876654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.67  E-value=0.054  Score=45.80  Aligned_cols=97  Identities=27%  Similarity=0.227  Sum_probs=60.6

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeC---ChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~---s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~  181 (231)
                      .++.+||-+|+|. |..+..+++ .|.+|++++.   +++-.+.+++.-..     .+.....+..+......+|+|+..
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~  245 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA  245 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence            3567999999875 777777776 7778999987   67777777653211     111111111110112468999854


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..-        ...+....+.|+++|.+++.....
T Consensus       246 ~g~--------~~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         246 TGV--------PPLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             cCC--------HHHHHHHHHHccCCcEEEEEecCC
Confidence            321        125677889999999998776654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.61  E-value=0.0065  Score=44.94  Aligned_cols=95  Identities=23%  Similarity=0.266  Sum_probs=54.7

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCC-C-CCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFT-W-CPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~fD~i~~~~~~~  185 (231)
                      ++++-+|...=-.=...+..|+ +++.+|.++--++.-   .     .+++ .+...|+.. + ...++||++.|..+++
T Consensus         3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~---~-----~dr~ssi~p~df~~~~~~y~~~fD~~as~~siE   74 (177)
T PF03269_consen    3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE---F-----RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIE   74 (177)
T ss_pred             ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc---c-----ccccccccHHHHHHHHHHhhccchhhheechhc
Confidence            5667777653222222223454 788998876322111   0     0111 222233332 1 2346899999999998


Q ss_pred             cc---------ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          186 AI---------EPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       186 ~~---------~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      |.         ++.--.+.+.++..+|||||.|++.
T Consensus        75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~  110 (177)
T PF03269_consen   75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG  110 (177)
T ss_pred             cccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence            84         2222356788999999999988764

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.56  E-value=0.13  Score=41.62  Aligned_cols=105  Identities=18%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             cCCCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---CceeEE
Q 026903          104 SGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLI  178 (231)
Q Consensus       104 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD~i  178 (231)
                      ...+.++.|+-+| -.-..+++++-.|  .++..+|+++..+++..+.+++.+.. ++..+..|+.+++|+   ..||++
T Consensus       148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~~~kFDvf  225 (354)
T COG1568         148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDLKRKFDVF  225 (354)
T ss_pred             ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHHHhhCCee
Confidence            3466778899999 4555555555433  48999999999999999888777643 589999999998875   489999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCC---cEEEEEE
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~l~~~~  213 (231)
                      +.-..- -+  .....++.+=...||.-   |++.+..
T Consensus       226 iTDPpe-Ti--~alk~FlgRGI~tLkg~~~aGyfgiT~  260 (354)
T COG1568         226 ITDPPE-TI--KALKLFLGRGIATLKGEGCAGYFGITR  260 (354)
T ss_pred             ecCchh-hH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence            842211 11  23345555555667666   6665543

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.47  E-value=0.037  Score=43.51  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             CcEEEecCCCchHHHHhcC--------CCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------
Q 026903          110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------  169 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--------~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------  169 (231)
                      .+++|+.+..|.++..|.+        .+.   .++++|+.+.+         ..   +.+.-+++|+...         
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI---~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI---EGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc---CceEEeecccCCHhHHHHHHHH
Confidence            6999999999999988865        122   39999996532         11   2467788999882         


Q ss_pred             CCCCceeEEEeCCc-----ccccCh----HHHHHHHHHHHhhcCCCcEEEE
Q 026903          170 CPTELFDLIFDYTF-----FCAIEP----EMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       170 ~~~~~fD~i~~~~~-----~~~~~~----~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +-.+..|+|+|-.+     +|.++.    +.....|.-...+|||||.++.
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence            23458999999754     444432    3345666777789999999874

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.44  E-value=0.03  Score=46.64  Aligned_cols=92  Identities=23%  Similarity=0.321  Sum_probs=60.8

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeEE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDLI  178 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~i  178 (231)
                      ++.+||..|+|. |..+..+++ .|.+|++++.+++..+.+++.-.        +.+..+...       ......+|++
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~D~v  236 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA--------DEVLNSLDDSPKDKKAAGLGGGFDVI  236 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--------CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence            456888888763 777777777 78899999999998888865321        111111111       1234579998


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.....        ...++.+.+.|+++|.++.....
T Consensus       237 id~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  265 (338)
T cd08254         237 FDFVGT--------QPTFEDAQKAVKPGGRIVVVGLG  265 (338)
T ss_pred             EECCCC--------HHHHHHHHHHhhcCCEEEEECCC
Confidence            853221        23567888999999999876554

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.43  E-value=0.2  Score=34.83  Aligned_cols=87  Identities=17%  Similarity=0.059  Sum_probs=58.6

Q ss_pred             CCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCCccccc
Q 026903          117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYTFFCAI  187 (231)
Q Consensus       117 cG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~~~~~~  187 (231)
                      ||.|..+..+++    .+..|+.+|.+++.++.+++..        +.++.+|..+..     .-..++.+++..     
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVILT-----   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence            555667766665    4558999999999988887643        678999999821     224688777422     


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +.+.....+....+.+.|...+++....+
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~   99 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIARVNDP   99 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            23444555666777788888887766544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.29  E-value=0.28  Score=40.57  Aligned_cols=103  Identities=12%  Similarity=0.150  Sum_probs=77.6

Q ss_pred             CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCC--C---CC-----CCcee
Q 026903          110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT--W---CP-----TELFD  176 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~--~---~~-----~~~fD  176 (231)
                      ..|+-+|||--.-...+-.+ +.+|+-+|. |+.++.=++.+.+.+.  ..+.+++..|+.+  +   ..     ...--
T Consensus        94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt  172 (297)
T COG3315          94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT  172 (297)
T ss_pred             cEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence            68999999876555555443 467888887 7777777666665542  2368999999994  1   12     33556


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++++-.++.+++++...+++..+.....||..+++..
T Consensus       173 ~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~  209 (297)
T COG3315         173 LWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY  209 (297)
T ss_pred             EEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence            7888999999999999999999999999998776644

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.22  E-value=0.1  Score=43.30  Aligned_cols=87  Identities=18%  Similarity=0.116  Sum_probs=56.9

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ++.+||-+|||. |..+..+++ .|.+ ++++|.+++.++.+....          ++  |..+. ....+|+|+....-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~i--~~~~~-~~~g~Dvvid~~G~  210 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------VL--DPEKD-PRRDYRAIYDASGD  210 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------cc--Chhhc-cCCCCCEEEECCCC
Confidence            457899999875 777777776 6775 777898887766664321          11  10010 12468999854321


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                              ...+..+.+.|+++|++++..+.
T Consensus       211 --------~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       211 --------PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             --------HHHHHHHHHhhhcCcEEEEEeec
Confidence                    13467788899999999887764

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=95.06  E-value=0.085  Score=43.50  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             cHHHHHHHHcCCCCCC---cEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-
Q 026903           95 APIIVHLHQSGALPKG---RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-  168 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~---~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-  168 (231)
                      -..+.+++........   +-+|||.|+.-.--.+-  ..+...+++|+++..+..|.++...+++.+.+.+++.+-.. 
T Consensus        86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt  165 (419)
T KOG2912|consen   86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT  165 (419)
T ss_pred             HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence            3456777765532222   35899988753322222  25678999999999999999999998888778777764433 


Q ss_pred             -------CCCCCceeEEEeCCcc
Q 026903          169 -------WCPTELFDLIFDYTFF  184 (231)
Q Consensus       169 -------~~~~~~fD~i~~~~~~  184 (231)
                             ..++..||+++|+..|
T Consensus       166 ll~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  166 LLMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             cchhhhccCccceeeEEecCCch
Confidence                   2234469999998654

>PTZ00357 methyltransferase; Provisional

Probab=95.04  E-value=0.093  Score=47.74  Aligned_cols=94  Identities=18%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             cEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHh-ccCCC-------CCceEEEEccCCCCCCC----
Q 026903          111 RALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELS-SSLPN-------AKFVSFLKADFFTWCPT----  172 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~----  172 (231)
                      .|+-+|+|-|=+....++    .+  .+++++|-++..+.....+. ....+       ..+++++..|+.++..+    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            689999999977655543    23  48999999976554444332 11122       34699999999996432    


Q ss_pred             --------CceeEEEeCC--cc--cccChHHHHHHHHHHHhhcCC----CcE
Q 026903          173 --------ELFDLIFDYT--FF--CAIEPEMRAAWAQKIKDFLKP----DGE  208 (231)
Q Consensus       173 --------~~fD~i~~~~--~~--~~~~~~~~~~~l~~~~~~L~p----gG~  208 (231)
                              +.+|+|++-.  .|  .-++|+-    |..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPEC----LDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPEC----LEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHH----HHHHHHhhhhhcccccc
Confidence                    2699999842  22  2245444    4555555554    665

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.02  E-value=0.056  Score=45.24  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=59.1

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCCCCCCCceeEEEe
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~fD~i~~  180 (231)
                      .++.+||-.|+|. |..+..+++ .|.+ |++++.+++..+.+++.-...    -+.....+   +.+......+|+|+.
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF----VINSGQDDVQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE----EEcCCcchHHHHHHHhCCCCCCEEEE
Confidence            4567899898764 556666666 7777 999999999888886532110    01111111   111122346999984


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...-        ...+....+.|+++|.+++....
T Consensus       238 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         238 CSGN--------TAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             CCCC--------HHHHHHHHHHhhcCCEEEEEcCC
Confidence            3221        12356677889999999877654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.99  E-value=0.03  Score=47.80  Aligned_cols=65  Identities=12%  Similarity=-0.055  Sum_probs=57.0

Q ss_pred             CCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCC
Q 026903          105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTW  169 (231)
Q Consensus       105 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~  169 (231)
                      ...++..|.|+.||.|-++..++..+..|++-|.++++++..+.++..+.+.+. +.+...|....
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            456778999999999999999999999999999999999999999988877665 88888776663

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.97  E-value=0.46  Score=35.60  Aligned_cols=106  Identities=22%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHh-cCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--C
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--P  171 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~  171 (231)
                      ...+.+.+.....+..+|+-+||=+-+..+.- ...+.+++..|++...-...          ++ .|..-|...+.  +
T Consensus        12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~   80 (162)
T PF10237_consen   12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELP   80 (162)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhh
Confidence            33444444444455689999999887666655 33667899999988753322          12 35555555521  1


Q ss_pred             ---CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 ---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ---~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                         .++||+|++-..+  +..+-..+....+.-++++++.+++++
T Consensus        81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence               4689999987776  666777778788888889988887754

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.95  E-value=0.11  Score=41.48  Aligned_cols=95  Identities=19%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC------CCCCCceeEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------~~~~~~fD~i  178 (231)
                      .++.+||..|+|. |..+..+++ .|.++++++.+++..+.+++....       .++...-.+      ......+|++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCEE
Confidence            4568999999986 666666666 778999999998887777553211       111111111      1123579999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +....-.        ..+..+.+.|+++|.++......
T Consensus       206 i~~~~~~--------~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         206 IDAVGGP--------ETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             EECCCCH--------HHHHHHHHhcccCCEEEEEccCC
Confidence            8543210        24667788999999988765443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.89  E-value=0.14  Score=43.02  Aligned_cols=93  Identities=15%  Similarity=0.101  Sum_probs=59.0

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      .++.+||-+|||. |..+..+++  . +.+|+++|.+++-++.+++ ...      ...+ .+   ......+|+|+...
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------~~~~-~~---~~~~~g~d~viD~~  230 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------TYLI-DD---IPEDLAVDHAFECV  230 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------eeeh-hh---hhhccCCcEEEECC
Confidence            4568999999876 556666555  3 3589999999988888765 211      1111 11   11112589998533


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .-.     .....+....++|+++|++++..+.
T Consensus       231 G~~-----~~~~~~~~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         231 GGR-----GSQSAINQIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             CCC-----ccHHHHHHHHHhCcCCcEEEEEeec
Confidence            210     0124577888999999999887764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.86  E-value=0.091  Score=45.44  Aligned_cols=97  Identities=13%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             HHHHHHcC--CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      +..+++..  ..++.+|+-+|||. |.....+++ .|.+|+.+|.++...+.|.+.-        .+..  +..+..  .
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G--------~~~~--~~~e~v--~  256 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--------YEVM--TMEEAV--K  256 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------CEEc--cHHHHH--c
Confidence            44455543  35789999999997 776666665 7889999999998877776521        1111  111222  3


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHH-HHhhcCCCcEEEEEEc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQK-IKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~~  214 (231)
                      .+|+|+....-        ...+.. ..+.+++||+++....
T Consensus       257 ~aDVVI~atG~--------~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         257 EGDIFVTTTGN--------KDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             CCCEEEECCCC--------HHHHHHHHHhcCCCCcEEEEeCC
Confidence            57999864221        123443 5889999999977664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.84  E-value=0.066  Score=43.70  Aligned_cols=97  Identities=18%  Similarity=0.057  Sum_probs=59.8

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEE--ccCCCCCCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFTWCPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~fD~i~~~  181 (231)
                      .++.+||-+|+|. |..+..+++ .|.+ |+++|.+++..+.+++.-...-    +....  ..+.+......+|+++..
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~----i~~~~~~~~~~~~~~~~g~d~vid~  194 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL----AEPEVLAERQGGLQNGRGVDVALEF  194 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEe----cCchhhHHHHHHHhCCCCCCEEEEC
Confidence            3667999998865 666666666 6775 9999999988888876422110    00000  000111123468999843


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..-        ...++...+.|+++|.+++....
T Consensus       195 ~G~--------~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       195 SGA--------TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CCC--------hHHHHHHHHHhcCCCEEEEeccC
Confidence            211        23467788999999999887743

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.78  E-value=0.31  Score=41.11  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------  170 (231)
                      ..|+.+|||..+..|.=+..|++..      ..|++=|.++.-+....+.....+ .+++.+...++....         
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence            3467899999999999888887622      279999999998888777664432 234444444444311         


Q ss_pred             -CCCceeEEEeCC------cccccC---------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          171 -PTELFDLIFDYT------FFCAIE---------------PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       171 -~~~~fD~i~~~~------~~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                       ....||-|+|--      ++.+-+               +..+..+|.+-.++||+||.|+.++=+.
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence             123689888731      111100               1233678999999999999998776443

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.68  E-value=0.3  Score=40.90  Aligned_cols=91  Identities=18%  Similarity=0.078  Sum_probs=59.3

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+||-.|+|. |..+..+++ .|.+|++++.+++-.+.+++.-...       ++.  ..+. ..+.+|+++.....
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi~--~~~~-~~~~~d~~i~~~~~  233 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AGG--AYDT-PPEPLDAAILFAPA  233 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ecc--cccc-CcccceEEEECCCc
Confidence            4567999999764 555666666 7889999999999888887743211       111  1111 12357876632221


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                              ...+....+.|++||++++....
T Consensus       234 --------~~~~~~~~~~l~~~G~~v~~G~~  256 (329)
T TIGR02822       234 --------GGLVPPALEALDRGGVLAVAGIH  256 (329)
T ss_pred             --------HHHHHHHHHhhCCCcEEEEEecc
Confidence                    12467788999999999887764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.59  E-value=0.056  Score=45.76  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++.+||-.|||. |..+..+++ .|. +|+++|.+++..+.+++.-...    -+.....+..+    ......+|+|+
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH----TVNSSGTDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce----EEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence            3567999999865 666677776 777 5999999999888886532110    01111111111    11223689998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ....-        ...+....+.+++||++++....
T Consensus       251 d~~g~--------~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       251 DAVGR--------PETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             ECCCC--------HHHHHHHHHHhccCCEEEEECCC
Confidence            53221        12456677899999999887654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.49  E-value=0.058  Score=46.87  Aligned_cols=105  Identities=13%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             CCCCCcEEEecCCC-chHHHHhc-C-CCCeEE------EEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMA-S-PERYVV------GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~-~-~~~~v~------~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      .+.+++|+-||||+ |. +..+- + .|.+|+      ++|......+.|.+.    +    .  ...++.+..  ...|
T Consensus        33 ~LkgKtIaIIGyGSqG~-AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d----G----F--~v~~~~Ea~--~~AD   99 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGL-NQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN----G----F--KVGTYEELI--PQAD   99 (487)
T ss_pred             HhCCCEEEEEccCHHHH-HHhCCCccccceeEEeccccccccccchHHHHHhc----C----C--ccCCHHHHH--HhCC
Confidence            35568999999998 55 22222 2 566776      667667766666543    1    1  123333332  3578


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE-ccCCCCCCCCCCCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGPPYKVS  228 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~-~~~~~~~~~~~~~~~  228 (231)
                      +|++     .+|++....+.+++...||||..|.+.+ |..-...--||-+++
T Consensus       100 vVvi-----LlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~i~~~~dvd  147 (487)
T PRK05225        100 LVIN-----LTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEVGEQIRKDIT  147 (487)
T ss_pred             EEEE-----cCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeCceeCCCCCc
Confidence            8883     3455556777799999999999987643 433322222444443

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.45  E-value=0.37  Score=33.66  Aligned_cols=87  Identities=17%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             CcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcccc
Q 026903          110 GRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCA  186 (231)
Q Consensus       110 ~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~~  186 (231)
                      ++|.|+|-|.= ..+..|++.|..++++|+++.   .+.         ..+.|+..|++++...  ...|+|++.-    
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~---------~g~~~v~DDitnP~~~iY~~A~lIYSiR----   78 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP---------EGLRFVVDDITNPNISIYEGADLIYSIR----   78 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc---------ccceEEEccCCCccHHHhhCccceeecC----
Confidence            59999999874 456677779999999999887   111         2378999999996432  4689998633    


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                       ++.+....+-.+.+.+  |.-+++....
T Consensus        79 -pppEl~~~ildva~aV--ga~l~I~pL~  104 (129)
T COG1255          79 -PPPELQSAILDVAKAV--GAPLYIKPLT  104 (129)
T ss_pred             -CCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence             2333344444455444  3345554443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=94.44  E-value=0.19  Score=46.37  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             CcEEEecCCCchHHHHhcC---------C-----CCeEEEEeCCh---HHHHHH-----------HHHhccC-----CC-
Q 026903          110 GRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKA-----------EELSSSL-----PN-  155 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~---------~-----~~~v~~iD~s~---~~i~~a-----------~~~~~~~-----~~-  155 (231)
                      -+|+|+|-|+|.+.+...+         +     -.+++++|..|   +-+..+           .+.....     +. 
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            6999999999987665542         1     13899999654   222222           1111110     10 


Q ss_pred             -----C--CceEEEEccCCCCCC--CCceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          156 -----A--KFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       156 -----~--~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                           .  -++++..+|+.+..+  ...+|+|+.-.+-..-.|+ =...+++.+.++++|||.+...+
T Consensus       139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence                 1  145577788877332  2469999965432221111 11578999999999999987543

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.37  E-value=0.11  Score=43.98  Aligned_cols=111  Identities=20%  Similarity=0.199  Sum_probs=73.5

Q ss_pred             HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHH----------HhccCCCCCceEEE
Q 026903           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEE----------LSSSLPNAKFVSFL  162 (231)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~----------~~~~~~~~~~i~~~  162 (231)
                      ..+..+.++... ++....|+|.|.|....+++..+  ..-+|+++.+..-+.+..          .+...  ...+..+
T Consensus       179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~--~~~~~~i  256 (419)
T KOG3924|consen  179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK--PNKIETI  256 (419)
T ss_pred             HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC--cCceeec
Confidence            345556666544 45799999999999999988733  366777776554433322          22221  2357888


Q ss_pred             EccCCCCC----CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          163 KADFFTWC----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       163 ~~d~~~~~----~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ++++.++.    .....++|+.+.+.  ++++..-+ +.++..-+++|.+++-
T Consensus       257 ~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS  306 (419)
T KOG3924|consen  257 HGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIIS  306 (419)
T ss_pred             ccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEec
Confidence            88888832    12368899988775  44444333 4589999999999864

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.35  E-value=0.16  Score=42.59  Aligned_cols=96  Identities=20%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             CCCcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEe
Q 026903          108 PKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~  180 (231)
                      ++.+||-.|+.  .|.++.+|++ .|..++++--+++-.+.+++.....    -+.+...|+.+    ......+|+|+.
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDvv~D  217 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREEDFVEQVRELTGGKGVDVVLD  217 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceEEEE
Confidence            46889998844  4788888888 6667888887777777666654322    13344444444    222347999995


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .-.         ...+......|+++|.++.+....
T Consensus       218 ~vG---------~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         218 TVG---------GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             CCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence            332         234677889999999998877765

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.34  E-value=0.086  Score=44.89  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-C--CCCCceeEEEe
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W--CPTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~fD~i~~  180 (231)
                      .++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-...    -+.....++.+ .  ...+.+|+|+.
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~i~~~~~~g~d~vid  265 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA----TVNAGDPNAVEQVRELTGGGVDYAFE  265 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce----EeCCCchhHHHHHHHHhCCCCCEEEE
Confidence            3457888898865 666666666 777 6999999999988886532110    01111111111 0  11226899985


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...-        ...+....++|+++|.++.....
T Consensus       266 ~~G~--------~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         266 MAGS--------VPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             CCCC--------hHHHHHHHHHHhcCCEEEEEccC
Confidence            3221        12466778899999998876653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.16  E-value=0.11  Score=43.67  Aligned_cols=95  Identities=16%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---c---CCCCCCCCcee-
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D---FFTWCPTELFD-  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d---~~~~~~~~~fD-  176 (231)
                      .++.+||-.|+|. |..+..+++ .|.+ |++++.+++..+.+++.-..       .++..   +   +........+| 
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~d~  231 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM-------QTFNSREMSAPQIQSVLRELRFDQ  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-------eEecCcccCHHHHHHHhcCCCCCe
Confidence            3567999998865 666666666 7775 78999999988877543211       11111   1   11122233577 


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+....-        ...+....++|++||.+++..+..
T Consensus       232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G~~~  263 (347)
T PRK10309        232 LILETAGV--------PQTVELAIEIAGPRAQLALVGTLH  263 (347)
T ss_pred             EEEECCCC--------HHHHHHHHHHhhcCCEEEEEccCC
Confidence            66632211        235677889999999998877543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.11  E-value=1.2  Score=34.99  Aligned_cols=104  Identities=11%  Similarity=-0.019  Sum_probs=62.1

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      .+++||-.|++.|   ..+..+++.|.+|++++.+++......+.....   .+++++.+|+.+...           -+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4578999998643   223344458999999999987766554433222   257889999987220           12


Q ss_pred             ceeEEEeCCccccc-ChHH--------------HHHHHHHHHhhcCCCcEEEEEEc
Q 026903          174 LFDLIFDYTFFCAI-EPEM--------------RAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD~i~~~~~~~~~-~~~~--------------~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+|.++........ +...              ...+++.+...++++|.+++..-
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  136 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS  136 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence            46877765432111 0011              12335666667778887766554

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.95  E-value=1.4  Score=34.46  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=66.5

Q ss_pred             CCCCcEEEecCCCch--HHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC-CCceeEE
Q 026903          107 LPKGRALVPGCGTGY--DVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP-TELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~fD~i  178 (231)
                      .+.+.++++.|+.|.  .++.|+-    -|.++++|-++++.+...++.+...+..+.++|+.++..+ ..+ -...|++
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~  119 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV  119 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence            344788988766442  3444432    6679999999999888888877766666667999887543 222 2468888


Q ss_pred             EeCCcccccChHHHH-HHHHHHHhhcCCCcEEEEEEccCCCCCCCCCC
Q 026903          179 FDYTFFCAIEPEMRA-AWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~  225 (231)
                      +...-.     ++.. ++|+.+.  +.|.|-+++.........+|..|
T Consensus       120 vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~~w  160 (218)
T PF07279_consen  120 VVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGFSW  160 (218)
T ss_pred             EEeCCc-----hhHHHHHHHHhc--cCCCceEEEEeccccCCcCCccH
Confidence            832211     2222 4444322  45667766655444333344444

The function of this family is unknown.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.73  E-value=0.83  Score=37.92  Aligned_cols=100  Identities=12%  Similarity=-0.048  Sum_probs=60.4

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHH--hccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~--~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ++|+-+|+|.  |.++..|++.|..|+.++.+++.++..++.  +.-.. ...............+.+.||+|+..-=- 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~-~g~~~~~~~~~~~~~~~~~~D~viv~vK~-   80 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVE-QGQASLYAIPAETADAAEPIHRLLLACKA-   80 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEee-CCcceeeccCCCCcccccccCEEEEECCH-
Confidence            5799999996  567888888888999999987766666542  11000 00111111111111123478988842111 


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                          .+....++.+...+.++..++...-.
T Consensus        81 ----~~~~~al~~l~~~l~~~t~vv~lQNG  106 (305)
T PRK05708         81 ----YDAEPAVASLAHRLAPGAELLLLQNG  106 (305)
T ss_pred             ----HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence                23356788889999999987776543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.55  E-value=0.2  Score=41.87  Aligned_cols=63  Identities=19%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             EEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026903          112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY  181 (231)
Q Consensus       112 vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~  181 (231)
                      |+|+.||.|.+..-+...|.+ +.++|+++.+++.-+.+...       .++.+|+.+...  -..+|+++..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGG   66 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEec
Confidence            689999999999999888885 56799999999988887642       234567766332  1257888864

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.52  E-value=0.11  Score=43.26  Aligned_cols=62  Identities=16%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEeC
Q 026903          111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDY  181 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~~  181 (231)
                      +++|+.||.|.+..-+...|. .+.++|+++.+++.-+.+..        ....+|+.+..    +. .+|+++..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~gg   68 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGG   68 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEec
Confidence            789999999999999999886 78999999999999998873        67788888833    22 59999864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.51  E-value=0.51  Score=41.99  Aligned_cols=97  Identities=18%  Similarity=0.299  Sum_probs=61.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--------------C-
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------------W-  169 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------------~-  169 (231)
                      .++.+|+-+|||. |..+..+++ .|..|+++|.+++.++.+++.-        .+++..|..+              . 
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence            3568999999997 666666666 7889999999999888777621        1222222111              0 


Q ss_pred             -------CC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          170 -------CP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       170 -------~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                             ..  -..+|+|++.....--+.+  .-+.++..+.+|||++++=+.
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEEee
Confidence                   11  1369999876533222111  113566789999999865433

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11524 putative methyltransferase; Provisional

Probab=93.50  E-value=0.13  Score=42.19  Aligned_cols=55  Identities=22%  Similarity=0.393  Sum_probs=39.5

Q ss_pred             ceEEEEccCCC---CCCCCceeEEEeCCcccc------c----Ch----HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          158 FVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       158 ~i~~~~~d~~~---~~~~~~fD~i~~~~~~~~------~----~~----~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +..++++|..+   ..++++||+|++...+..      .    ..    +-...++..+.++|||||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            35688899888   346679999999755421      0    00    12257889999999999999875

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.47  E-value=1.4  Score=36.54  Aligned_cols=78  Identities=15%  Similarity=0.054  Sum_probs=51.9

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.+..+.+..+.+.+.+.......++.++.+|+.+..           ..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            34578888888766   33455566899999999988766655554432211235889999998821           12


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        92 ~~iD~li~nAG~  103 (313)
T PRK05854         92 RPIHLLINNAGV  103 (313)
T ss_pred             CCccEEEECCcc
Confidence            468999987543

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=93.45  E-value=0.27  Score=40.42  Aligned_cols=60  Identities=23%  Similarity=0.272  Sum_probs=51.7

Q ss_pred             CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      |...+.+.+.....++..|||.-+|+|..+......|..++|+|++++.++.+.+++...
T Consensus       208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             hHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            345567777766777899999999999999999889999999999999999999988654

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.44  E-value=0.63  Score=35.03  Aligned_cols=99  Identities=20%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             ecCCCchHHHHhcC--C-CCeEEEE--eCChHHHHHHH---HHhccCCCCCceE-EEEccCCCC---C--CCCceeEEEe
Q 026903          115 PGCGTGYDVVAMAS--P-ERYVVGL--EISDIAIKKAE---ELSSSLPNAKFVS-FLKADFFTW---C--PTELFDLIFD  180 (231)
Q Consensus       115 iGcG~G~~~~~l~~--~-~~~v~~i--D~s~~~i~~a~---~~~~~~~~~~~i~-~~~~d~~~~---~--~~~~fD~i~~  180 (231)
                      +|=|.=.++..|++  . +.+++++  |..++..+...   +++..... ..+. ....|+...   .  ....||.|+-
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence            44455556666666  2 3456555  44444443322   33333211 1222 334555552   2  3468999995


Q ss_pred             CCcccccC-------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIE-------------PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +  +.|..             ......+++.+.++|+++|.++|.....
T Consensus        82 N--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   82 N--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             e--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4  44443             1344788899999999999998876544

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=93.35  E-value=0.37  Score=36.81  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             CcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCCC----------CCCCce
Q 026903          110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF  175 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~----------~~~~~f  175 (231)
                      ..|+.+|||--.....+..+  +..++-+|. |++++.-++.+.....  ..+.+++.+|+.+.          +.....
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p  158 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP  158 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence            48999999988777777663  457777777 5556555555444311  12356799999971          123567


Q ss_pred             eEEEeCCcccccChHHHHHHHHHH
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKI  199 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~  199 (231)
                      -++++-.++.+++++....+++.+
T Consensus       159 tl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  159 TLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             eEEEEcchhhcCCHHHHHHHHHHh
Confidence            788889999999998877777765

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.12  E-value=0.28  Score=41.24  Aligned_cols=68  Identities=12%  Similarity=-0.023  Sum_probs=52.9

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC----ceeEEEeCCc
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYTF  183 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~fD~i~~~~~  183 (231)
                      .+++|+.||.|.+.+-+...|. -+.++|+++.+++.-+.+...      -.++..|+.+.....    .+|+++....
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP   76 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP   76 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence            5899999999999999988887 678899999999988887742      346677777633222    6899986543

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=93.11  E-value=0.21  Score=35.56  Aligned_cols=91  Identities=20%  Similarity=0.129  Sum_probs=48.6

Q ss_pred             CCcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCccc
Q 026903          109 KGRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFC  185 (231)
Q Consensus       109 ~~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~  185 (231)
                      ..+|+|+|-|.= ..+..|.+.|..|+++|+.+.   .+.         ..+.++..|++++...  ...|+|++.....
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~   81 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP   81 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc---------cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence            359999999985 445566668899999999987   111         2377999999996432  3799999744322


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                          +.. ..+.++++.  -|.-|++..++.+.
T Consensus        82 ----El~-~~il~lA~~--v~adlii~pL~~e~  107 (127)
T PF03686_consen   82 ----ELQ-PPILELAKK--VGADLIIRPLGGES  107 (127)
T ss_dssp             ----TSH-HHHHHHHHH--HT-EEEEE-BTTB-
T ss_pred             ----HHh-HHHHHHHHH--hCCCEEEECCCCCC
Confidence                222 233344433  35667777766643

; PDB: 2K4M_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.09  E-value=0.17  Score=42.86  Aligned_cols=39  Identities=18%  Similarity=0.143  Sum_probs=34.4

Q ss_pred             CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHH
Q 026903          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE  148 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~  148 (231)
                      ..|+|+|.|.|+++.++.- .|..|++||-|....+.|++
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            6999999999999999975 78899999999888777654

>PLN02740 Alcohol dehydrogenase-like

Probab=92.87  E-value=0.37  Score=41.22  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC----CCCCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT----WCPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~----~~~~~~  174 (231)
                      .++.+||-+|||. |..+..+++ .|. +|+++|.+++.++.+++.-.     +  .++...     +.+    ... +.
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-----~--~~i~~~~~~~~~~~~v~~~~~-~g  268 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-----T--DFINPKDSDKPVHERIREMTG-GG  268 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-----c--EEEecccccchHHHHHHHHhC-CC
Confidence            4567999999875 666666776 777 69999999999888866321     1  122211     111    111 26


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      +|+|+....-        ...+......+++| |.++++....
T Consensus       269 ~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G~~~  303 (381)
T PLN02740        269 VDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLGIHP  303 (381)
T ss_pred             CCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEccCC
Confidence            9999853331        12456677788887 9887766543

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=92.64  E-value=0.47  Score=39.57  Aligned_cols=93  Identities=22%  Similarity=0.341  Sum_probs=59.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCCCC-CCCceeEEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWC-PTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~-~~~~fD~i~  179 (231)
                      .++.+||..|||. |..+..+++ .|. .+++++.+++..+.+++...     +  .++..   ++.... ....+|+++
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-----~--~vi~~~~~~~~~~~~~~~~vd~vl  236 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-----D--ETVNLARDPLAAYAADKGDFDVVF  236 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-----C--EEEcCCchhhhhhhccCCCccEEE
Confidence            3667888888876 667777776 777 79999999888876655321     1  11211   111111 123599998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .....        ...++...+.|+++|+++....
T Consensus       237 d~~g~--------~~~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         237 EASGA--------PAALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             ECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            54321        1246778899999999887654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.59  E-value=0.5  Score=36.04  Aligned_cols=98  Identities=18%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-------CC-C--------CCceEEEEccCCCCCCC
Q 026903          111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-N--------AKFVSFLKADFFTWCPT  172 (231)
Q Consensus       111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~~  172 (231)
                      +|--+|+|. | ..+..++..|.+|+.+|.+++.++.+++.+..       .+ .        ..++. ...|+.+..  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~--   77 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV--   77 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC--
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh--
Confidence            366788886 4 45555666899999999999999888775543       11 1        12343 233443332  


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                       ..|+|+-. +.+.+  +.+.++++++.+.+.|+.+|...+-+
T Consensus        78 -~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSs  116 (180)
T PF02737_consen   78 -DADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSS  116 (180)
T ss_dssp             -TESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred             -hhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCC
Confidence             57888732 22333  67789999999999999988765543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.56  E-value=0.58  Score=39.44  Aligned_cols=98  Identities=15%  Similarity=0.200  Sum_probs=58.9

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee-
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD-  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD-  176 (231)
                      .++.+||-.|||. |..+..+++ .|.+++++|.+++.++.+++.-...    -+.....   ++.+    ......+| 
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~~~~~~~~t~~~g~d~  240 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADL----TLNPKDKSAREVKKLIKAFAKARGLRS  240 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----EecCccccHHHHHHHHHhhcccCCCCC
Confidence            4568999999976 777777776 7778999999999888886532110    0111111   1111    11122354 


Q ss_pred             ---EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ---~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                         +|+....     .   ...+....++|++||++++..+..
T Consensus       241 ~~d~v~d~~g-----~---~~~~~~~~~~l~~~G~iv~~G~~~  275 (349)
T TIGR03201       241 TGWKIFECSG-----S---KPGQESALSLLSHGGTLVVVGYTM  275 (349)
T ss_pred             CcCEEEECCC-----C---hHHHHHHHHHHhcCCeEEEECcCC
Confidence               5552111     1   234566788999999998877643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=92.37  E-value=0.24  Score=41.40  Aligned_cols=96  Identities=21%  Similarity=0.243  Sum_probs=59.8

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++.+||..|+|. |..+..+++ .|.+++++..+++..+.+++...     +.+ .....++.+    ......+|+++
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~-----~~v~~~~~~~~~~~l~~~~~~~~vd~vl  232 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA-----DDTINVGDEDVAARLRELTDGEGADVVI  232 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC-----CEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence            3457899988764 677777777 78899999888888887754321     111 111111111    22334689998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ....-        ...+..+.+.|+++|.++.....
T Consensus       233 d~~g~--------~~~~~~~~~~l~~~G~~i~~g~~  260 (337)
T cd08261         233 DATGN--------PASMEEAVELVAHGGRVVLVGLS  260 (337)
T ss_pred             ECCCC--------HHHHHHHHHHHhcCCEEEEEcCC
Confidence            54211        13467788899999998765433

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.21  E-value=1.3  Score=36.51  Aligned_cols=98  Identities=15%  Similarity=0.041  Sum_probs=55.3

Q ss_pred             cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903          111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~  188 (231)
                      +|+-+|+|. | .++..|++.|.+|+.++.+++.++..++...... .........-..+......+|+|+..--     
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~vila~k-----   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLE-DGEITVPVLAADDPAELGPQDLVILAVK-----   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCccc-CCceeecccCCCChhHcCCCCEEEEecc-----
Confidence            688899986 3 4555566688899999998777766654321100 0111100000111111256898884322     


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          189 PEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..+...+++.+...+.++..++...-
T Consensus        76 ~~~~~~~~~~l~~~l~~~~~iv~~~n  101 (304)
T PRK06522         76 AYQLPAALPSLAPLLGPDTPVLFLQN  101 (304)
T ss_pred             cccHHHHHHHHhhhcCCCCEEEEecC
Confidence            22346677888888888777665443

>PRK08324 short chain dehydrogenase; Validated

Probab=92.20  E-value=1.9  Score=40.04  Aligned_cols=73  Identities=16%  Similarity=0.059  Sum_probs=49.3

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~  173 (231)
                      ++++||-.|++.|   ..+..+++.|.+|+.+|.++...+.+.+.+...   .++.++.+|+.+..      .     -+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4578888886443   233444558899999999988777665544322   35888999988721      1     13


Q ss_pred             ceeEEEeCCc
Q 026903          174 LFDLIFDYTF  183 (231)
Q Consensus       174 ~fD~i~~~~~  183 (231)
                      .+|+|+.+..
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            6899987754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.17  E-value=0.94  Score=37.06  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~  188 (231)
                      +|.-||+|.  |.++..|.+.|.+|+++|.+++.++.+.+...       +.....+. +.  ....|+|+..     ++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-------~~~~~~~~-~~--~~~aDlVila-----vp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-------VDEASTDL-SL--LKDCDLVILA-----LP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-------cccccCCH-hH--hcCCCEEEEc-----CC
Confidence            567788886  56667777788899999999988887765310       11111111 11  1357888743     34


Q ss_pred             hHHHHHHHHHHHhhcCCCcEE
Q 026903          189 PEMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~l  209 (231)
                      +....++++++...++++.++
T Consensus        67 ~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         67 IGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             HHHHHHHHHHHHHhCCCCcEE
Confidence            455566788888888877544

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.10  E-value=3.2  Score=33.31  Aligned_cols=75  Identities=17%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      .+++++|-.|++.|   ..+..|++.|.+|++++.+++.++...+.....+  .++.++.+|+.+...           -
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45678998986543   2334455689999999999877665554443222  357888999888321           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|+|+....
T Consensus        86 ~~id~vi~~Ag   96 (263)
T PRK07814         86 GRLDIVVNNVG   96 (263)
T ss_pred             CCCCEEEECCC
Confidence            36899987643

>PRK07109 short chain dehydrogenase; Provisional

Probab=91.93  E-value=3.3  Score=34.79  Aligned_cols=75  Identities=13%  Similarity=0.046  Sum_probs=50.8

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      ..+++||-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            34568888887654   2334455689999999999887776655544332  357889999888211           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|+++.+..
T Consensus        84 g~iD~lInnAg   94 (334)
T PRK07109         84 GPIDTWVNNAM   94 (334)
T ss_pred             CCCCEEEECCC
Confidence            46899987654

>PRK07576 short chain dehydrogenase; Provisional

Probab=91.89  E-value=3.2  Score=33.37  Aligned_cols=74  Identities=15%  Similarity=0.009  Sum_probs=47.1

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ++++++|-.|.+.|   ..+..++..|.+|+.++.++..++...+.....+  .++.++.+|+.+..           ..
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45678888886443   2334455589999999998876655544333221  34678889988721           01


Q ss_pred             CceeEEEeCC
Q 026903          173 ELFDLIFDYT  182 (231)
Q Consensus       173 ~~fD~i~~~~  182 (231)
                      +.+|+++++.
T Consensus        85 ~~iD~vi~~a   94 (264)
T PRK07576         85 GPIDVLVSGA   94 (264)
T ss_pred             CCCCEEEECC
Confidence            3579998764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.84  E-value=0.66  Score=40.12  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=56.3

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ...+++|+-+|+|. |......++ .|.+|+++|.++.....+...    +    ..+.  ++.+..  ...|+|++...
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG  259 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG  259 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC
Confidence            35678999999997 666666655 788999999988654333321    1    1111  222222  24688876322


Q ss_pred             ccccChHHHHHHHH-HHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWAQ-KIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~  215 (231)
                      -        ..++. .....+|+|++++...+.
T Consensus       260 ~--------~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       260 N--------KDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             C--------HHHHHHHHHhcCCCCcEEEEECCC
Confidence            1        22343 477889999998876654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=91.82  E-value=0.36  Score=40.57  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=58.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++.+||-.|+|. |..+..+++ .|. .++++|.+++..+.+++.-.    ..-+.....+..+    ......+|+++
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vl  240 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAVI  240 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence            3457888888763 566666666 677 69999999988877775321    0001111111111    12234699998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....-        ...+..+.++|+++|+++....
T Consensus       241 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         241 IAGGG--------QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             ECCCC--------HHHHHHHHHHhhcCCEEEEecc
Confidence            53221        1346788899999999886654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=91.78  E-value=0.33  Score=40.62  Aligned_cols=95  Identities=16%  Similarity=0.222  Sum_probs=56.9

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEe
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~  180 (231)
                      ++.+||..|+|. |..+..+++ .|. .+++++.+++..+.+++.-..    .-+.....++.+    ......+|+++.
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~i~~~~~~~~~d~vld  242 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT----DIINPKNGDIVEQILELTGGRGVDCVIE  242 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc----EEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence            457888877653 667777776 674 788998888777776653210    001111111111    223356999985


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....        ...+....+.|+++|.++....
T Consensus       243 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~  268 (347)
T cd05278         243 AVGF--------EETFEQAVKVVRPGGTIANVGV  268 (347)
T ss_pred             ccCC--------HHHHHHHHHHhhcCCEEEEEcC
Confidence            3221        1256778899999999876653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.74  E-value=0.6  Score=40.62  Aligned_cols=91  Identities=15%  Similarity=0.030  Sum_probs=56.7

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .+.+++|+-+|+|. |......++ .|.+|+.+|.++.....+...    +    .++  .++.+..  ..+|+|+....
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G----~~v--~~l~eal--~~aDVVI~aTG  276 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G----FRV--MTMEEAA--ELGDIFVTATG  276 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C----CEe--cCHHHHH--hCCCEEEECCC
Confidence            34678999999986 555544444 788999999998755444321    1    111  1222222  25899986421


Q ss_pred             ccccChHHHHHHHH-HHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQ-KIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~  216 (231)
                      -        ..++. .....+|+|++++...+..
T Consensus       277 ~--------~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        277 N--------KDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             C--------HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            1        12343 6778899999988766543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.66  E-value=0.66  Score=38.54  Aligned_cols=92  Identities=16%  Similarity=0.097  Sum_probs=59.3

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.++++++.+++..+.+++.- .    +  .++..    +..+   ......+|
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG-a----~--~vi~~~~~~~~~~~~~~~~~~gvd  209 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG-F----D--VAFNYKTVKSLEETLKKASPDGYD  209 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C----C--EEEeccccccHHHHHHHhCCCCeE
Confidence            35578988884  45788888887 7889999999998888886522 1    1  11211    1111   11124699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+....     .    ..+....++|+++|+++....
T Consensus       210 vv~d~~G-----~----~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       210 CYFDNVG-----G----EFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             EEEECCC-----H----HHHHHHHHHhCcCcEEEEecc
Confidence            9984321     1    235678899999999987654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK08267 short chain dehydrogenase; Provisional

Probab=91.62  E-value=3.3  Score=33.01  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C------CCc
Q 026903          110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P------TEL  174 (231)
Q Consensus       110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~------~~~  174 (231)
                      +++|-.|++.|   .++..+++.|.+|+.++.+++.++...+...    ..++.++.+|+.+..      .      .+.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            36788887654   2344555689999999999887766655432    135889999998721      0      246


Q ss_pred             eeEEEeCCcc
Q 026903          175 FDLIFDYTFF  184 (231)
Q Consensus       175 fD~i~~~~~~  184 (231)
                      +|+++.+...
T Consensus        78 id~vi~~ag~   87 (260)
T PRK08267         78 LDVLFNNAGI   87 (260)
T ss_pred             CCEEEECCCC
Confidence            7999876543

>PRK08265 short chain dehydrogenase; Provisional

Probab=91.57  E-value=4.6  Score=32.33  Aligned_cols=71  Identities=14%  Similarity=0.066  Sum_probs=47.1

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~  173 (231)
                      .++++|-.|++.|   ..+..|++.|.+|+.++.+++..+...+..     ..++.++.+|+.+..      .     -+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4568888886554   334455568999999999877555444332     135788999998731      0     13


Q ss_pred             ceeEEEeCCc
Q 026903          174 LFDLIFDYTF  183 (231)
Q Consensus       174 ~fD~i~~~~~  183 (231)
                      ..|+++.+..
T Consensus        80 ~id~lv~~ag   89 (261)
T PRK08265         80 RVDILVNLAC   89 (261)
T ss_pred             CCCEEEECCC
Confidence            6898887654

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.54  E-value=2.8  Score=34.31  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=61.0

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH-HHHHHHHHhccCCCCCceEEEEccCCCCC------C----
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWC------P----  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~-~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~----  171 (231)
                      ..+++++|-.|++.|   .++..+++.|.+|+.++.++. ..+...+.....+  .++.++.+|+.+..      .    
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~  120 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR  120 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            345578999987664   334555668999999987642 2333333332222  35788999988721      0    


Q ss_pred             -CCceeEEEeCCcccc-------cChH-----------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 -TELFDLIFDYTFFCA-------IEPE-----------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~-------~~~~-----------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       -..+|+++.+.....       .+.+           ....+++.+...++++|.++++.
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence             135788886644321       1111           11345556666677777766544

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.45  E-value=1.6  Score=36.17  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i  178 (231)
                      .++.+||..|+|. |..+..+++ .|.+ ++.++.+++..+.+++...     +  .++..+-.+     ......+|++
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-----T--ETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-----e--EEecCCCCCHHHHHHhcCCCCcEE
Confidence            3557888888753 666666666 6766 8999999988887754321     0  122221111     1123569999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +....-        ...+....++|+++|.++......
T Consensus       231 ~~~~~~--------~~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         231 IEATGV--------PKTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             EECCCC--------hHHHHHHHHHHhcCCEEEEEecCC
Confidence            854221        134677789999999988766543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.44  E-value=0.36  Score=40.57  Aligned_cols=97  Identities=23%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++.+||-.|+|. |..+..+++ .|. .|++++.+++..+.+++.-..    .-+.....++.+    ......+|+|+
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~l~~~~~~~~~d~vi  246 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGAT----IVLDPTEVDVVAEVRKLTGGGGVDVSF  246 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEECCCccCHHHHHHHHhCCCCCCEEE
Confidence            3457888887653 555555565 777 899999999888887653210    001111111111    12233599998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .....        ...+..+.+.|+++|.++.....
T Consensus       247 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         247 DCAGV--------QATLDTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             ECCCC--------HHHHHHHHHhccCCCEEEEEccC
Confidence            53321        12467788899999998876653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=91.42  E-value=0.44  Score=39.82  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc------CCCCCCCCceeE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD------FFTWCPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~fD~  177 (231)
                      .++.+||..|+|. |..+..+++ .|.+ +++++.+++..+.+++.. .      ..++...      +........+|+
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g-~------~~~~~~~~~~~~~~~~~~~~~~~d~  230 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG-A------DDTINPKEEDVEKVRELTEGRGADL  230 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-C------CEEecCccccHHHHHHHhCCCCCCE
Confidence            3557888888765 666666666 7776 999998888777765421 1      1111111      111222335999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++....     .   ...+..+.++|+++|.++.....
T Consensus       231 vld~~g-----~---~~~~~~~~~~l~~~G~~v~~g~~  260 (343)
T cd08236         231 VIEAAG-----S---PATIEQALALARPGGKVVLVGIP  260 (343)
T ss_pred             EEECCC-----C---HHHHHHHHHHhhcCCEEEEEccc
Confidence            985421     1   12467788999999998776543

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK06139 short chain dehydrogenase; Provisional

Probab=91.41  E-value=3.4  Score=34.66  Aligned_cols=75  Identities=16%  Similarity=0.072  Sum_probs=51.4

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ..+++||-.|++.|   .++..+++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+..           ..
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG   82 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            34578888888654   2344455689999999999888776665554332  35778888988721           01


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|+++.+..
T Consensus        83 g~iD~lVnnAG   93 (330)
T PRK06139         83 GRIDVWVNNVG   93 (330)
T ss_pred             CCCCEEEECCC
Confidence            46899998754

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=91.33  E-value=0.54  Score=39.37  Aligned_cols=93  Identities=22%  Similarity=0.204  Sum_probs=58.3

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---c-------CCCCCCCC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D-------FFTWCPTE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d-------~~~~~~~~  173 (231)
                      .++.+||-.|+|. |..+..+++ .|.+ ++.++.+++..+.+++. ..    +  .++..   +       +.......
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~----~--~vi~~~~~~~~~~~~~~~~~~~~~  233 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA----T--HTVNVRTEDTPESAEKIAELLGGK  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC----c--EEeccccccchhHHHHHHHHhCCC
Confidence            4557888877765 666777776 7776 89999888877777552 11    1  11111   1       11122334


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+|+|+.....        ...+....++|+++|.++....
T Consensus       234 ~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         234 GPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             CCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEcc
Confidence            69999854221        1246778899999999876654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK13699 putative methylase; Provisional

Probab=91.33  E-value=0.44  Score=37.83  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             EEEEccCCC---CCCCCceeEEEeCCcccc---------cC----hHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          160 SFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       160 ~~~~~d~~~---~~~~~~fD~i~~~~~~~~---------~~----~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +++++|..+   ..+++++|+|+....+.-         +.    .+-...++.++.++|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            567788776   456788999998754420         00    122357889999999999988763

>cd05281 TDH Threonine dehydrogenase

Probab=91.28  E-value=0.61  Score=39.04  Aligned_cols=96  Identities=16%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC---CCCCCCCceeEEEe
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF---FTWCPTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~fD~i~~  180 (231)
                      .++.+||-.|+|. |..+..+++ .|. ++++++-+++..+.+++.-...    -+.....++   ........+|+|+.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~vd~vld  237 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV----VINPREEDVVEVKSVTDGTGVDVVLE  237 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce----eeCcccccHHHHHHHcCCCCCCEEEE
Confidence            3556777777654 666666666 677 7888887777776666532110    011111111   11233457899985


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ...-        ...+..+.++|+++|.++....
T Consensus       238 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~  263 (341)
T cd05281         238 MSGN--------PKAIEQGLKALTPGGRVSILGL  263 (341)
T ss_pred             CCCC--------HHHHHHHHHHhccCCEEEEEcc
Confidence            3321        1235677889999999876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.26  E-value=1.1  Score=37.76  Aligned_cols=94  Identities=18%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026903          107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD  176 (231)
                      .++.+||-.|+ | .|..+..+++ .|.+|++++.+++..+.+++.+..    +  .++..    ++.+   ......+|
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa----~--~vi~~~~~~~~~~~i~~~~~~gvD  230 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF----D--EAFNYKEEPDLDAALKRYFPEGID  230 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC----C--EEEECCCcccHHHHHHHHCCCCcE
Confidence            45679999997 3 5788888887 788999999999888777643321    1  12211    1111   01123689


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+....         ...+....++|+++|.++++...
T Consensus       231 ~v~d~vG---------~~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        231 IYFDNVG---------GDMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             EEEECCC---------HHHHHHHHHHhccCCEEEEECcc
Confidence            9984322         12467788999999999876643

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.13  E-value=5.1  Score=32.09  Aligned_cols=104  Identities=21%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             CCCCcEEEecCCCc-h----HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          107 LPKGRALVPGCGTG-Y----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~G-~----~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      ..++.+|-.|+++| .    .+..|++.|.+|+.++.++...+...+.....+   .+.++.+|+.+..           
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   84 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE   84 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence            45678999998752 3    344555689999999988654333333222211   2457788888721           


Q ss_pred             CCCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-+..|+++.+..+..          .+.++..           .+.+.+...|+.+|.++...
T Consensus        85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is  148 (258)
T PRK07533         85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS  148 (258)
T ss_pred             HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            1146899998754321          1222221           23455666777788776544

>PRK05872 short chain dehydrogenase; Provisional

Probab=91.11  E-value=4.6  Score=33.11  Aligned_cols=75  Identities=11%  Similarity=0.050  Sum_probs=49.9

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.++++|-.|++.|   ..+..+++.|.+|+.++.+++.++...+....   ...+..+.+|+.+..           .-
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45678898887665   33445556899999999998877665554432   124566678888721           01


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +.+|+++.+...
T Consensus        84 g~id~vI~nAG~   95 (296)
T PRK05872         84 GGIDVVVANAGI   95 (296)
T ss_pred             CCCCEEEECCCc
Confidence            468999987654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.09  E-value=5  Score=31.60  Aligned_cols=75  Identities=11%  Similarity=0.030  Sum_probs=48.1

Q ss_pred             CCCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG--Y-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      ++++++|-.|++.|  . .+..+++.|.+|+.++.++..++.+.+.....  ..++.++.+|+.+...           .
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34578998887443  2 22334458889999999987666555444332  2357888999876210           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|.|+.+..
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            36899987644

>PRK05875 short chain dehydrogenase; Provisional

Probab=91.07  E-value=4.6  Score=32.53  Aligned_cols=77  Identities=17%  Similarity=0.081  Sum_probs=48.1

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      .+++++|-.|++.|   ..+..|++.|.+|++++.+++..+...+.........++.++.+|+.+...           -
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34578999986543   223344458899999998877655444433222112368889999987321           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        85 ~~~d~li~~ag   95 (276)
T PRK05875         85 GRLHGVVHCAG   95 (276)
T ss_pred             CCCCEEEECCC
Confidence            36799887653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.00  E-value=1.2  Score=36.62  Aligned_cols=87  Identities=18%  Similarity=0.076  Sum_probs=53.5

Q ss_pred             CcEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .+|+-+|.|.  |.+++.+.+.|.  .+++.|.+...++.+.+.-        +.....+..........|+|+..    
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~~~~~~aD~Viva----   71 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLAEAAAEADLVIVA----   71 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhhhhcccCCEEEEe----
Confidence            5788888885  566777777777  4688888888777776432        11111111101122457888843    


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l  209 (231)
                       +|......+++++...|++|..|
T Consensus        72 -vPi~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          72 -VPIEATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             -ccHHHHHHHHHHhcccCCCCCEE
Confidence             33345567788888778887654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.93  E-value=0.55  Score=42.88  Aligned_cols=95  Identities=11%  Similarity=-0.023  Sum_probs=62.2

Q ss_pred             CcEEEecCCC-chHHH-HhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~~~-~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~  182 (231)
                      .+|+-+|+|. |+... .|.+.+..++.+|.+++.++.+++.        ....+.+|..+..     .-+..|.+++. 
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~~-  471 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVIT-  471 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEEE-
Confidence            5787777775 54433 3344788999999999999988752        2568899998821     12367777732 


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                          .+++.....+-...+.+.|+..+++-..+++
T Consensus       472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~  502 (601)
T PRK03659        472 ----CNEPEDTMKIVELCQQHFPHLHILARARGRV  502 (601)
T ss_pred             ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence                2223333344455666788888887666543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.82  E-value=1.9  Score=34.77  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=57.5

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .++.+||-.|||. |..+..+++ .|.+ +++++.+++..+.+++.-..    +.+  .... ........+|+|+....
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~--~~~~-~~~~~~~~~d~vl~~~~  168 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPV--AADT-ADEIGGRGADVVIEASG  168 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccc--cccc-hhhhcCCCCCEEEEccC
Confidence            3557888888865 666666666 6777 99999999888876653201    111  1100 01112346899985322


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .        ...+....+.|+++|.++....
T Consensus       169 ~--------~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         169 S--------PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             C--------hHHHHHHHHHhcCCcEEEEEec
Confidence            1        1246778889999999876654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.81  E-value=2.6  Score=38.77  Aligned_cols=95  Identities=13%  Similarity=0.101  Sum_probs=63.5

Q ss_pred             CCcEEEecCCC-chHHHH-hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CC--CCceeEEEeC
Q 026903          109 KGRALVPGCGT-GYDVVA-MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP--TELFDLIFDY  181 (231)
Q Consensus       109 ~~~vLDiGcG~-G~~~~~-l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~i~~~  181 (231)
                      ..+|+-+|||. |+.... |.+.|..++.+|.+++.++.+++.        ....+.+|..+.   ..  -+..|.+++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence            36899999986 665443 444788999999999999988752        256889999883   22  2367777732


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                           .+++.....+-...+.+.|+-.+++-..+.
T Consensus       472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~  501 (621)
T PRK03562        472 -----IDDPQTSLQLVELVKEHFPHLQIIARARDV  501 (621)
T ss_pred             -----eCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence                 233333444555666667887776655443

>PRK07806 short chain dehydrogenase; Provisional

Probab=90.70  E-value=4.9  Score=31.67  Aligned_cols=103  Identities=15%  Similarity=0.027  Sum_probs=57.7

Q ss_pred             CCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeCCh-HHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          108 PKGRALVPGCGTG--Y-DVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~s~-~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      .++++|-.|++.|  . ++..+++.|.+|++++.+. ...+...+.+...+  .++.++.+|+.+...           -
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4578998887543  2 3344455888999887754 23333332222221  357888999888321           1


Q ss_pred             CceeEEEeCCccccc---Ch--------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          173 ELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~---~~--------~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +..|+++.+......   ++        .....+++.+.+.++.+|.+++.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i  133 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV  133 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence            357887765432110   00        12245667777777666766544

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.65  E-value=6.4  Score=31.36  Aligned_cols=102  Identities=17%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      ..++.+|-.|.++  |   ..+..|++.|.+|+.++.+++..+...+..     ..++.++.+|+.+..           
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~   79 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFATIKE   79 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-----cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence            3457889888763  3   334555668999999887754333333321     124778899998721           


Q ss_pred             CCCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-+.+|+++.+..+..          .+.++.           ..+.+.+...|+.+|.++.+.
T Consensus        80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is  143 (252)
T PRK06079         80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT  143 (252)
T ss_pred             HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence            1146899988754321          222222           234455666777788766544

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=90.60  E-value=1  Score=36.45  Aligned_cols=66  Identities=18%  Similarity=0.163  Sum_probs=45.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~  180 (231)
                      .+++...|+|+-.|.++..|.+++..|+++|--+.+-.....        ..++....|-+.+.| ....|-.+|
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dt--------g~v~h~r~DGfk~~P~r~~idWmVC  276 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDT--------GQVTHLREDGFKFRPTRSNIDWMVC  276 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcc--------cceeeeeccCcccccCCCCCceEEe
Confidence            456899999999999999999999999999986654332211        235555555555443 334555444

>PRK12939 short chain dehydrogenase; Provisional

Probab=90.58  E-value=3.5  Score=32.44  Aligned_cols=73  Identities=15%  Similarity=-0.027  Sum_probs=47.2

Q ss_pred             CCCcEEEecCCCchHHHH----hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          108 PKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +++++|-.|++ |..+..    +++.|.+++.++.+++.+....+.....+  .++.++.+|+.+...           -
T Consensus         6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788877764 444444    44588999999988876665544443221  358899999987221           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|+|+....
T Consensus        83 ~~id~vi~~ag   93 (250)
T PRK12939         83 GGLDGLVNNAG   93 (250)
T ss_pred             CCCCEEEECCC
Confidence            46899887654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.46  E-value=0.52  Score=40.09  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEE--ccCCC-C--CCCCceeEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFT-W--CPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~--~d~~~-~--~~~~~fD~i  178 (231)
                      .++.+||-.|||. |..+..+++ .|. +|+++|.+++..+.+++.-...    -+....  .++.+ .  ...+.+|++
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~----~i~~~~~~~~~~~~v~~~~~~g~d~v  259 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD----CVNPNDYDKPIQEVIVEITDGGVDYS  259 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe----EEcccccchhHHHHHHHHhCCCCCEE
Confidence            3567999999875 666777776 777 7999999999988886642110    011110  01111 0  011268988


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (231)
                      +....-        ...+....++++++ |++++....
T Consensus       260 id~~G~--------~~~~~~~~~~~~~~~G~~v~~g~~  289 (368)
T TIGR02818       260 FECIGN--------VNVMRAALECCHKGWGESIIIGVA  289 (368)
T ss_pred             EECCCC--------HHHHHHHHHHhhcCCCeEEEEecc
Confidence            843221        23456677888886 998877764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02494 adenosylhomocysteinase

Probab=90.40  E-value=0.93  Score=39.89  Aligned_cols=98  Identities=16%  Similarity=0.048  Sum_probs=60.1

Q ss_pred             HHHHHHcC--CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      +..+++..  .+.+++|+-+|+|. |......++ .|.+|+++|.++.....+....        ..+.  ++.+..  .
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G--------~~vv--~leEal--~  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG--------YQVL--TLEDVV--S  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC--------Ceec--cHHHHH--h
Confidence            44444443  34678999999996 655555554 7889999999986544443211        1111  222222  2


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..|+|++...-.++       +.....+.||+||+|+-+..
T Consensus       309 ~ADVVI~tTGt~~v-------I~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        309 EADIFVTTTGNKDI-------IMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             hCCEEEECCCCccc-------hHHHHHhcCCCCCEEEEcCC
Confidence            57999863322222       23667789999999987765

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.39  E-value=3.8  Score=36.64  Aligned_cols=105  Identities=13%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CCCcEEEecCCCchHHHHhcC---CC---CeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCC-C--CCCCceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMAS---PE---RYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~---~~---~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~-~--~~~~~fD~  177 (231)
                      +...|.|..||+|.+.....+   .+   ..++|.+....+...++.++.-+... +......+|-.. +  .....||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            447999999999998875432   12   36999999999999999875433221 122333333332 1  12346888


Q ss_pred             EEeCCcccc---------------------cCh--HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          178 IFDYTFFCA---------------------IEP--EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       178 i~~~~~~~~---------------------~~~--~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      |+++..+..                     +++  +.-..++..+...|++||...++
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI  354 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV  354 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence            776542211                     111  12356778888899999975443

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PLN02827 Alcohol dehydrogenase-like

Probab=90.38  E-value=0.51  Score=40.35  Aligned_cols=93  Identities=19%  Similarity=0.206  Sum_probs=58.1

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-----cCCC----CCCCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-----d~~~----~~~~~~  174 (231)
                      .++.+||-.|+|. |..+..+++ .|. .|+++|.+++..+.+++.-.     +  .++..     ++.+    .. .+.
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-----~--~~i~~~~~~~~~~~~v~~~~-~~g  263 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-----T--DFINPNDLSEPIQQVIKRMT-GGG  263 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----c--EEEcccccchHHHHHHHHHh-CCC
Confidence            3567999998865 666666666 776 58999999988888865321     1  11211     1111    11 126


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (231)
                      +|+|+....-        ...+....+.+++| |++++....
T Consensus       264 ~d~vid~~G~--------~~~~~~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        264 ADYSFECVGD--------TGIATTALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             CCEEEECCCC--------hHHHHHHHHhhccCCCEEEEECCc
Confidence            8999853221        12356778888998 999876654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.29  E-value=1.2  Score=37.34  Aligned_cols=97  Identities=13%  Similarity=0.001  Sum_probs=60.2

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-----CCceEEEEccCCCCCCCCce
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-----AKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-----~~~i~~~~~d~~~~~~~~~f  175 (231)
                      .+|--||+|+  ...+..++..|..|+..|.+++.++.+...+.       +.+.     ..++++.. ++.+..  ...
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av--~~a   84 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACV--ADA   84 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHh--cCC
Confidence            5788999995  45566667789999999999998876655322       1111     01222221 221111  356


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      |+|+-. +.+.+  +.+..+++++.+.++|+.+|...
T Consensus        85 DlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaSn  118 (321)
T PRK07066         85 DFIQES-APERE--ALKLELHERISRAAKPDAIIASS  118 (321)
T ss_pred             CEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEEC
Confidence            888742 22222  56678889999999999855543

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.21  E-value=1.5  Score=36.42  Aligned_cols=93  Identities=19%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             CCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCC
Q 026903          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~  182 (231)
                      .++.+||-.||| .|..+..+++ .|.++++++.+++..+.+++.. .    +  .++...-....  ....+|+++...
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~----~--~~~~~~~~~~~~~~~~~~d~vi~~~  233 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A----D--EVVDSGAELDEQAAAGGADVILVTV  233 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C----c--EEeccCCcchHHhccCCCCEEEECC
Confidence            345788888887 5766666666 6889999999998888775421 1    0  11111101100  124689888532


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .-        ...+..+.+.|+++|.++....
T Consensus       234 ~~--------~~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         234 VS--------GAAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             Cc--------HHHHHHHHHhcccCCEEEEECC
Confidence            21        1246777899999999887654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=90.10  E-value=8.1  Score=30.61  Aligned_cols=75  Identities=11%  Similarity=-0.015  Sum_probs=49.4

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.++..++...+.....+  .++.++.+|+.+..           .-
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            44678888886654   3344555588999999998776665544443322  35778888988721           11


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|+++.+..
T Consensus        85 ~~id~vi~~ag   95 (254)
T PRK08085         85 GPIDVLINNAG   95 (254)
T ss_pred             CCCCEEEECCC
Confidence            46899998754

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=89.97  E-value=0.97  Score=38.95  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD  176 (231)
                      .++.+||-.|+|. |..+..+++ .|.+ ++.+|.+++.++.+++.-.     +  .+...   +..+    ......+|
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-----~--~v~~~~~~~~~~~v~~~~~~~g~D  256 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-----E--TVDLSKDATLPEQIEQILGEPEVD  256 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-----e--EEecCCcccHHHHHHHHcCCCCCc
Confidence            3457777788865 666666666 6764 6667888888888876321     1  11111   1111    12234689


Q ss_pred             EEEeCCcccc------cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCA------IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++.......      .........++...+++++||.++++...
T Consensus       257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            9985433210      00011124678888999999999987775

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.92  E-value=1.2  Score=39.08  Aligned_cols=108  Identities=19%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----C----CCCCceeEE
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W----CPTELFDLI  178 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~----~~~~~fD~i  178 (231)
                      +.++|-+|-|.|.+...+..  +...+++++++|++++.|++++...... +..+.-.|-.+    .    ..+..||++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            46999999999999888865  4469999999999999999987543211 22222222222    1    123479998


Q ss_pred             EeC---Cccccc--ChH--HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       179 ~~~---~~~~~~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +.-   .-.+-+  ++.  ....++...+..|.|.|.+++.-..++
T Consensus       375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~  420 (482)
T KOG2352|consen  375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN  420 (482)
T ss_pred             EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence            842   112222  222  336789999999999999877655554

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.85  E-value=8.9  Score=30.88  Aligned_cols=74  Identities=20%  Similarity=0.057  Sum_probs=46.4

Q ss_pred             CCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          108 PKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       108 ~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++.+|-.|++.  |   ..+..|++.|.+|+.++.+....+.+.+.....   ....++.+|+.+..           .
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh
Confidence            457899999875  3   246666678999998887743333333322221   23567889988821           1


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+.+|+++.+..+
T Consensus        82 ~g~iD~linnAg~   94 (262)
T PRK07984         82 WPKFDGFVHSIGF   94 (262)
T ss_pred             cCCCCEEEECCcc
Confidence            1468999987643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.83  E-value=3.5  Score=36.04  Aligned_cols=96  Identities=16%  Similarity=0.030  Sum_probs=57.7

Q ss_pred             CCCCcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeE
Q 026903          107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~  177 (231)
                      ....+|+-+|+|.  ++..++    +.|..|+.+|.+++.++..++..      ..+.++.+|..+..     .-..+|.
T Consensus       229 ~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~  300 (453)
T PRK09496        229 KPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA  300 (453)
T ss_pred             CCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence            3457899998854  444443    36889999999999888777653      13668889987721     1246788


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++...     .+...-++..+.+.+.+. .+++...++
T Consensus       301 vi~~~~-----~~~~n~~~~~~~~~~~~~-~ii~~~~~~  333 (453)
T PRK09496        301 FIALTN-----DDEANILSSLLAKRLGAK-KVIALVNRP  333 (453)
T ss_pred             EEECCC-----CcHHHHHHHHHHHHhCCC-eEEEEECCc
Confidence            774221     122222334444555554 454544443

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=89.81  E-value=1.8  Score=36.77  Aligned_cols=92  Identities=26%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-c---CCCCCCCCceeEEEeC
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D---FFTWCPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~fD~i~~~  181 (231)
                      ++.+||-.|+|. |..+..+++ .|.++++++.++.....+.+.+..    +  .++.. +   +....  +.+|+|+..
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga----~--~vi~~~~~~~~~~~~--~~~D~vid~  254 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA----D--SFLVSTDPEKMKAAI--GTMDYIIDT  254 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC----c--EEEcCCCHHHHHhhc--CCCCEEEEC
Confidence            567888899875 677777776 788888888776543322222211    0  11111 1   11111  248888843


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..-        ...+....++|+++|.++.+...
T Consensus       255 ~g~--------~~~~~~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        255 VSA--------VHALGPLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             CCC--------HHHHHHHHHHhcCCcEEEEeCCC
Confidence            221        12467788899999999877653

>PRK07985 oxidoreductase; Provisional

Probab=89.60  E-value=7.5  Score=31.89  Aligned_cols=105  Identities=16%  Similarity=0.084  Sum_probs=60.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC--hHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s--~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      ..++++|-.|++.|   ..+..|++.|.+|+.++.+  .+..+...+.....+  .++.++.+|+.+..           
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~  124 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK  124 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            45578999997654   3455556689999887654  233333333332222  35778899998721           


Q ss_pred             CCCceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-+..|+++.+....       ..+.++.           ..+++.+...|+.+|.+++..
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS  185 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS  185 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence            114578888764321       1222221           245566666777788776543

>cd08293 PTGR2 Prostaglandin reductase

Probab=89.60  E-value=1.2  Score=37.17  Aligned_cols=89  Identities=16%  Similarity=0.064  Sum_probs=57.4

Q ss_pred             CcEEEecC--CCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCCC---CCCCceeEEE
Q 026903          110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTW---CPTELFDLIF  179 (231)
Q Consensus       110 ~~vLDiGc--G~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~---~~~~~fD~i~  179 (231)
                      .+||-.|+  |.|..+..+++ .|. +|++++.+++..+.+++.+..    +  .++..   ++.+.   .....+|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa----~--~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF----D--AAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC----c--EEEECCCCCHHHHHHHHCCCCceEEE
Confidence            68988886  45778888877 787 799999998888877664321    1  12221   11110   1124699998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ....-     .    .+....++|+++|.++...
T Consensus       230 d~~g~-----~----~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         230 DNVGG-----E----ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             ECCCc-----H----HHHHHHHHhccCCEEEEEe
Confidence            53221     1    2467788999999998765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK06125 short chain dehydrogenase; Provisional

Probab=89.55  E-value=8.2  Score=30.73  Aligned_cols=76  Identities=14%  Similarity=0.046  Sum_probs=49.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD  176 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|++++.+++..+...+.+.... ..++.++.+|+.+..       .-+..|
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            34578888897554   2234455688999999998877666554443221 235788889987721       124689


Q ss_pred             EEEeCCc
Q 026903          177 LIFDYTF  183 (231)
Q Consensus       177 ~i~~~~~  183 (231)
                      +++.+..
T Consensus        84 ~lv~~ag   90 (259)
T PRK06125         84 ILVNNAG   90 (259)
T ss_pred             EEEECCC
Confidence            9887643

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.52  E-value=1  Score=38.01  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----------CCCCCCCCc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----------FFTWCPTEL  174 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----------~~~~~~~~~  174 (231)
                      ++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.- .    +  .++..+          +........
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g-~----~--~vi~~~~~~~~~~~~~i~~~~~~~~  249 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG-A----D--ATIDIDELPDPQRRAIVRDITGGRG  249 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC-C----C--eEEcCcccccHHHHHHHHHHhCCCC
Confidence            567888888653 555555565 788 8999999888777665421 1    1  111111          111122346


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+|+....-        ...+....++|+++|+++....
T Consensus       250 ~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         250 ADVVIEASGH--------PAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CcEEEECCCC--------hHHHHHHHHHhccCCEEEEEcC
Confidence            9999853211        1245677889999999986653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.50  E-value=2.4  Score=34.89  Aligned_cols=75  Identities=12%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ..++.||-=|.|.|   ..+..++++|..++..|++++..+.-.+.....+   ++..+.+|+.+..           .-
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            45679999999988   4578888899999999999998877777665543   6889999998832           12


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            579999987543

>PRK10458 DNA cytosine methylase; Provisional

Probab=89.37  E-value=1.6  Score=38.57  Aligned_cols=56  Identities=13%  Similarity=-0.088  Sum_probs=41.9

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      .+++|+.||.|.+..-+-..|. .|.++|+++.+.+.-+.+....   +....+.+|+.+
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~  145 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRD  145 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhh
Confidence            5999999999999999988777 6788999999988888776321   123344455555

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.36  E-value=0.94  Score=38.75  Aligned_cols=105  Identities=12%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~  183 (231)
                      .++.+|+-+|+|. |..+...+. .|.+|+.+|.+++..+.+......     .+.....+..+.. .-..+|+|++...
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~-----~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG-----RIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc-----eeEeccCCHHHHHHHHccCCEEEEccc
Confidence            3557899999984 666555555 788999999998876665544321     1111111111100 0136899996532


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      ..--..+  .-+-++..+.++|+++++-+..++.+
T Consensus       240 ~~g~~~p--~lit~~~l~~mk~g~vIvDva~d~GG  272 (370)
T TIGR00518       240 IPGAKAP--KLVSNSLVAQMKPGAVIVDVAIDQGG  272 (370)
T ss_pred             cCCCCCC--cCcCHHHHhcCCCCCEEEEEecCCCC
Confidence            1100000  00124455678999988766666543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=89.34  E-value=2.4  Score=37.09  Aligned_cols=106  Identities=12%  Similarity=-0.021  Sum_probs=64.8

Q ss_pred             CCcEEEecCCCchHHHHh--cCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC---CC-CCCceeEEE
Q 026903          109 KGRALVPGCGTGYDVVAM--ASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WC-PTELFDLIF  179 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l--~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~---~~-~~~~fD~i~  179 (231)
                      +..++|+|.|.|.-.-.+  .-++  ..++.||.+..+......+.....- ..-.++.. -...   +. ....||+|+
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~-~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH-IGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh-cCchhccccchhcccCCCCcccceeeEE
Confidence            468888888876544333  3333  3799999999999888776644100 01112222 1222   22 234699999


Q ss_pred             eCCcccccCh-HHHHHHHHH-HHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEP-EMRAAWAQK-IKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~-~~~~~~l~~-~~~~L~pgG~l~~~~~~  215 (231)
                      |.+.++++.. ..+....+. +....++|+.++++.-.
T Consensus       280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g  317 (491)
T KOG2539|consen  280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG  317 (491)
T ss_pred             eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence            9999988754 334344444 44667888888887643

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=89.22  E-value=0.94  Score=36.35  Aligned_cols=51  Identities=14%  Similarity=0.062  Sum_probs=34.9

Q ss_pred             HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026903           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE  148 (231)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~  148 (231)
                      +..+...... +..+++|+.||+|..+..+...+..|+.-|+++..+...+.
T Consensus         9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~   60 (260)
T PF02086_consen    9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA   60 (260)
T ss_dssp             HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence            3344443333 56899999999999999998888899999999988877663

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=89.06  E-value=2.5  Score=34.99  Aligned_cols=87  Identities=22%  Similarity=0.133  Sum_probs=50.2

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGT-G-YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .+|.-||+|. | .++..+.+.|.  +|+++|.+++..+.+++.    +.   ......+..+..  ...|+|+..-   
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~---~~~~~~~~~~~~--~~aDvViiav---   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL---GDRVTTSAAEAV--KGADLVILCV---   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC---CceecCCHHHHh--cCCCEEEECC---
Confidence            5789999986 3 44555555663  899999999887776542    11   001111211111  3478887432   


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                        ++.....+++.+...+++|+.++
T Consensus        75 --p~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         75 --PVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             --CHHHHHHHHHHHHhhCCCCCEEE
Confidence              22333455666666777776543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=89.05  E-value=0.93  Score=37.51  Aligned_cols=92  Identities=16%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC---CCCCCceeE
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~---~~~~~~fD~  177 (231)
                      .++.+||-.|+  |.|..+..+++ .|.++++++.+++..+.+++.- .    +  .++..   ++.+   ......+|+
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G-a----~--~vi~~~~~~~~~~v~~~~~~gvd~  214 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG-F----D--AVFNYKTVSLEEALKEAAPDGIDC  214 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C----C--EEEeCCCccHHHHHHHHCCCCcEE
Confidence            35578888874  45777777777 7889999999998888887632 1    1  12221   1111   011246899


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+....         ...+....++|+++|.++....
T Consensus       215 vld~~g---------~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         215 YFDNVG---------GEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             EEECCC---------HHHHHHHHHhhccCCEEEEEcc
Confidence            984322         1246778899999999877643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.99  E-value=0.94  Score=40.97  Aligned_cols=92  Identities=16%  Similarity=0.069  Sum_probs=57.7

Q ss_pred             CcEEEecCCC-chHHHH-hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYDVVA-MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~~~~-l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~  182 (231)
                      .+++-+|||. |+.... |.+.|..++.+|.+++.++.+++.        ....+.+|..+..     .-+.+|.+++. 
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~-  488 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLT-  488 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEE-
Confidence            5888888876 444333 334788999999999998888752        2678999999831     12467866531 


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                          .++++....+-...+...|+..++....
T Consensus       489 ----~~~~~~~~~iv~~~~~~~~~~~iiar~~  516 (558)
T PRK10669        489 ----IPNGYEAGEIVASAREKRPDIEIIARAH  516 (558)
T ss_pred             ----cCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence                2222222223334455677777766543

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=88.97  E-value=1.1  Score=37.52  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=58.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD  176 (231)
                      .++.+||-.|+|. |..+..+++ .|. ++++++.+++..+.+++.-.     +  .++..   +..+    ......+|
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~-----~--~~~~~~~~~~~~~~~~~~~~~~~d  234 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA-----T--RAVNVAKEDLRDVMAELGMTEGFD  234 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-----c--EEecCccccHHHHHHHhcCCCCCC
Confidence            3567777777764 666666666 777 68888888887777665321     1  11111   1111    22334689


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+....-        ...+....++|+++|.++......
T Consensus       235 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~~  266 (341)
T PRK05396        235 VGLEMSGA--------PSAFRQMLDNMNHGGRIAMLGIPP  266 (341)
T ss_pred             EEEECCCC--------HHHHHHHHHHHhcCCEEEEEecCC
Confidence            99853221        234677888999999998876543

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.97  E-value=3.5  Score=33.94  Aligned_cols=90  Identities=16%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+||-.|+|. |..+..+++ .|.++++++.+++..+.+++ ...   . .+.    +.........+|+++....-
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~---~-~~~----~~~~~~~~~~~d~vid~~g~  224 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV---E-TVL----PDEAESEGGGFDVVVEATGS  224 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC---c-EEe----CccccccCCCCCEEEECCCC
Confidence            3457888887653 455555555 78899999999998888876 211   1 111    11111233569999853211


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                              ...+....++|+++|.++...
T Consensus       225 --------~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         225 --------PSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             --------hHHHHHHHHHhhcCCEEEEEc
Confidence                    124567788899999988643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.96  E-value=3.4  Score=33.73  Aligned_cols=94  Identities=19%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-C--------CceEEEEccCCCCCCC
Q 026903          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCPT  172 (231)
Q Consensus       111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~~  172 (231)
                      +|--+|+|.  +..+..++..|.+|+++|.+++.++.++++..       +.+. .        .++.+ ..|...   .
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---~   80 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---L   80 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---h
Confidence            678889985  56666677788899999999999876553221       1110 0        02221 122211   2


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ...|+|+..- ...  .+....+++++.+.++|+..|..
T Consensus        81 ~~aDlVi~av-~e~--~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         81 KDADLVIEAA-TEN--MDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             ccCCeeeecc-ccc--HHHHHHHHHHHHhhCCCCcEEEE
Confidence            4578887321 111  13446888999999999987744

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.92  E-value=2.1  Score=35.14  Aligned_cols=96  Identities=20%  Similarity=0.202  Sum_probs=57.4

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC--------CCC---------CceEEEEccCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--------PNA---------KFVSFLKADFFTWC  170 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~~  170 (231)
                      .+|.-+|+|.  +..+..++..|.+|+.+|.+++.++.+++.....        ...         .++.+ ..|+.+..
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence            4788899985  3445555668899999999999888876653210        000         12222 22222221


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                        ...|+|+.... ..  .+....+++++...++++.+|..
T Consensus        83 --~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         83 --KDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             --cCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence              35688874322 11  24567778888888887776543

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=88.81  E-value=1.1  Score=36.86  Aligned_cols=77  Identities=9%  Similarity=-0.047  Sum_probs=64.0

Q ss_pred             EEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          134 VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       134 ~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      .-+...+...+.++++..      ++.+.++|+.+..   +.+..|.++...+-.++++.....++.++.+-+.+|..++
T Consensus       290 lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi  363 (414)
T COG5379         290 LPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI  363 (414)
T ss_pred             CChhhchhhHHHHHhhhh------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence            446667777888887763      5889999999943   5678999999999999999999999999999999999999


Q ss_pred             EEEccC
Q 026903          211 TLMFPI  216 (231)
Q Consensus       211 ~~~~~~  216 (231)
                      +-+...
T Consensus       364 fRtaae  369 (414)
T COG5379         364 FRTAAE  369 (414)
T ss_pred             Eecccc
Confidence            866543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.78  E-value=1.9  Score=35.38  Aligned_cols=95  Identities=15%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCCC
Q 026903          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCPT  172 (231)
Q Consensus       111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~~  172 (231)
                      +|.-||+|.  +..+..+++.|.+|+.+|.+++.++.+.++....       + ..        .++++ ..+..+..  
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~--   79 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV--   79 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh--
Confidence            678889985  3455566678999999999999998876542110       0 00        01221 12222222  


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ...|+|+..-. .  +.+....++.++.+.++|+.++.+
T Consensus        80 ~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~~~il~~  115 (288)
T PRK09260         80 ADADLVIEAVP-E--KLELKKAVFETADAHAPAECYIAT  115 (288)
T ss_pred             cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence            35788884322 1  113456778888888888876644

>PRK07063 short chain dehydrogenase; Provisional

Probab=88.74  E-value=2.6  Score=33.63  Aligned_cols=77  Identities=18%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+.......++.++.+|+.+...           -
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34578998998665   234555668999999999888777666555431112458889999987210           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|.++.+..
T Consensus        85 g~id~li~~ag   95 (260)
T PRK07063         85 GPLDVLVNNAG   95 (260)
T ss_pred             CCCcEEEECCC
Confidence            46899887654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=88.70  E-value=1.7  Score=36.37  Aligned_cols=106  Identities=16%  Similarity=0.069  Sum_probs=59.5

Q ss_pred             CCCCCcEEEecCCC-chH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .+.+++|--||+|. |.- +..|...|.+|++.+......+.+...    +    ..  ..++.+..  ...|+|+..  
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~----G----~~--v~sl~Eaa--k~ADVV~ll--   78 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKAD----G----FE--VMSVSEAV--RTAQVVQML--   78 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHc----C----CE--ECCHHHHH--hcCCEEEEe--
Confidence            45568999999986 533 333444788998887554443333321    1    22  22333333  346888843  


Q ss_pred             ccccChHHHHHHH-HHHHhhcCCCcEEEEEE-ccCCCCCCCCCCCCC
Q 026903          184 FCAIEPEMRAAWA-QKIKDFLKPDGELITLM-FPISDHVGGPPYKVS  228 (231)
Q Consensus       184 ~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~-~~~~~~~~~~~~~~~  228 (231)
                         +|++....++ ..+...|+||..|++.+ |..-..---||=+|+
T Consensus        79 ---LPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~i~pp~~vd  122 (335)
T PRK13403         79 ---LPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQINPPSYVD  122 (335)
T ss_pred             ---CCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCceeCCCCCe
Confidence               3322334454 56899999999876643 333332233555543

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.52  E-value=13  Score=31.04  Aligned_cols=119  Identities=10%  Similarity=0.040  Sum_probs=75.6

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC----CeEEEEeCChHHHHHHHHHhccCC-----------------
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP-----------------  154 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~~iD~s~~~i~~a~~~~~~~~-----------------  154 (231)
                      ..+..++.+ ......|+.+|||.-.....|...+    ..++=+|+++....+... ....+                 
T Consensus        76 ~~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s  153 (335)
T KOG2918|consen   76 HAVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSILLGLHDEDVVDLS  153 (335)
T ss_pred             HHHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhhhccccccccccC
Confidence            334555554 2233699999999988888887744    367778887776666511 11110                 


Q ss_pred             ----CCCceEEEEccCCCCC-----------CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          155 ----NAKFVSFLKADFFTWC-----------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       155 ----~~~~i~~~~~d~~~~~-----------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                          -.++...+.+|+.+..           ...-.-++++--++.+++++.-..+++.+.+..+..+.+......+
T Consensus       154 ~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~  230 (335)
T KOG2918|consen  154 GTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINP  230 (335)
T ss_pred             cceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCC
Confidence                1125566667766411           0123445556677888999888899999999888887665554443

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.52  E-value=9.5  Score=30.51  Aligned_cols=103  Identities=13%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             CCCCcEEEecCCC-chH----HHHhcCCCCeEEEEeCCh---HHHHHHHHHhccCCCCCceEEEEccCCCCC--------
Q 026903          107 LPKGRALVPGCGT-GYD----VVAMASPERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWC--------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~----~~~l~~~~~~v~~iD~s~---~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  170 (231)
                      ..++.+|-.|+++ +..    +..|++.|.+|+.++.+.   +.++...+...    ..++.++.+|+.+..        
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~   80 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE----GQESLLLPCDVTSDEEITACFET   80 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC----CCceEEEecCCCCHHHHHHHHHH
Confidence            4467899999762 333    445555899998886543   33333333221    135778899998821        


Q ss_pred             ---CCCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026903          171 ---PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ---~~~~fD~i~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~  213 (231)
                         .-+.+|+++.+..+..          .+.+...           .+.+.+...|+++|.++.+.
T Consensus        81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is  147 (257)
T PRK08594         81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT  147 (257)
T ss_pred             HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence               1256899887643321          1212111           23455667777788776554

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=88.50  E-value=1.1  Score=37.90  Aligned_cols=97  Identities=21%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc--CCC----CCCCCceeE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d--~~~----~~~~~~fD~  177 (231)
                      .++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-...    -+.....+  +.+    ... ..+|+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~-~g~d~  257 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD----FINPKDSDKPVSEVIREMTG-GGVDY  257 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc----EeccccccchHHHHHHHHhC-CCCCE
Confidence            4567898888764 555566666 777 7999999999888886532110    01111100  011    112 46899


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      |+....-        ...+....+.|+++ |.++......
T Consensus       258 vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~~  289 (365)
T cd08277         258 SFECTGN--------ADLMNEALESTKLGWGVSVVVGVPP  289 (365)
T ss_pred             EEECCCC--------hHHHHHHHHhcccCCCEEEEEcCCC
Confidence            9843211        13467778889885 9988776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=88.48  E-value=0.92  Score=37.92  Aligned_cols=97  Identities=20%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             CCCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++.+||-.|+| .|..+..+++ .|.+ |++++-+++..+.+++.-..    .-+.....++.+    ......+|+|+
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~v~~~~~~~~~~l~~~~~~~~~d~vl  235 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT----YVVNPFKEDVVKEVADLTDGEGVDVFL  235 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc----EEEcccccCHHHHHHHhcCCCCCCEEE
Confidence            355677777765 3556666666 7775 88898888777776653210    001111111111    22334689998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ....-        ...+..+.+.|+++|.++.....
T Consensus       236 d~~g~--------~~~~~~~~~~l~~~g~~v~~g~~  263 (340)
T TIGR00692       236 EMSGA--------PKALEQGLQAVTPGGRVSLLGLP  263 (340)
T ss_pred             ECCCC--------HHHHHHHHHhhcCCCEEEEEccC
Confidence            54211        13467788999999998776554

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=88.43  E-value=2.5  Score=33.61  Aligned_cols=76  Identities=17%  Similarity=0.056  Sum_probs=50.1

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .+.++++|-.|++.|   .++..+++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+..           .
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456788998887554   2334455589999999999876665554443322  35788999988721           0


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+++|.++.+..
T Consensus        86 ~~~id~vi~~ag   97 (256)
T PRK06124         86 HGRLDILVNNVG   97 (256)
T ss_pred             cCCCCEEEECCC
Confidence            135788887644

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.34  E-value=4.6  Score=33.74  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      +|.-+|||. | .++..|++.|..|+.++.+++.++..++.-...      ....++.+. .|..+.. .+.+|+|+.  
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~Dliii--   77 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL-SDNATCIIL--   77 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH-hCCCCEEEE--
Confidence            578899987 3 456666778889999999888777666531110      011112221 1111111 135788772  


Q ss_pred             cccccChHHHHHHHHHHHh-hcCCCcEEEEEEccC
Q 026903          183 FFCAIEPEMRAAWAQKIKD-FLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~~~~  216 (231)
                         .+++.....+++.+.. .++++..+++..-..
T Consensus        78 ---avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         78 ---AVPTQQLRTICQQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             ---EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence               2455667788888887 888888776654433

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.27  E-value=8.8  Score=32.10  Aligned_cols=80  Identities=16%  Similarity=0.088  Sum_probs=58.0

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      ..++..++--|+-+|   ..+..|+.+|.+|+-.-.+.+..+.+.+.+.......++.++++|+.++.           .
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~  111 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK  111 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence            344568888888776   34667777999999999998777777776665434457999999999832           2


Q ss_pred             CCceeEEEeCCccc
Q 026903          172 TELFDLIFDYTFFC  185 (231)
Q Consensus       172 ~~~fD~i~~~~~~~  185 (231)
                      ....|+.+.+....
T Consensus       112 ~~~ldvLInNAGV~  125 (314)
T KOG1208|consen  112 EGPLDVLINNAGVM  125 (314)
T ss_pred             CCCccEEEeCcccc
Confidence            35789988875443

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=88.27  E-value=0.91  Score=38.53  Aligned_cols=91  Identities=23%  Similarity=0.288  Sum_probs=57.3

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCC----CCCCCceeE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFT----WCPTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~----~~~~~~fD~  177 (231)
                      ++.+||-.|+|. |..+..+++ .|. .++++|.++...+.+++.-.       -.++..+   ..+    .. ...+|+
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~-~~~~d~  257 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREIT-GGGVDY  257 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHh-CCCCcE
Confidence            457888888764 666666666 777 69999999988877765321       1122211   111    12 346899


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+.....        ...+....+.|+++|.++....
T Consensus       258 vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         258 ALDTTGV--------PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             EEECCCC--------cHHHHHHHHHhccCCEEEEeCc
Confidence            9853221        1246778888999999876553

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK06500 short chain dehydrogenase; Provisional

Probab=88.25  E-value=8.9  Score=30.12  Aligned_cols=71  Identities=14%  Similarity=0.042  Sum_probs=45.8

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      +++++|-.|++.|   ..+..+++.|.+|++++.+++.++...+...     .++.++.+|+.+...           .+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAFG   79 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4567888887654   2344455688999999998776655444331     347788888876211           13


Q ss_pred             ceeEEEeCCc
Q 026903          174 LFDLIFDYTF  183 (231)
Q Consensus       174 ~fD~i~~~~~  183 (231)
                      .+|+++.+..
T Consensus        80 ~id~vi~~ag   89 (249)
T PRK06500         80 RLDAVFINAG   89 (249)
T ss_pred             CCCEEEECCC
Confidence            6898887654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=88.12  E-value=9.5  Score=33.32  Aligned_cols=91  Identities=14%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             cEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C--CCCceeEEEeC
Q 026903          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C--PTELFDLIFDY  181 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~--~~~~fD~i~~~  181 (231)
                      +|+-+||  |..+..+++    .|..|+.+|.+++.++.+++..       .+.++.+|..+.   .  .-..+|.|++.
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            5677777  455544443    7889999999999887776522       367888888772   1  12468877743


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .     +.+.....+....+.+.|.-.+++...+
T Consensus        73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~~~  101 (453)
T PRK09496         73 T-----DSDETNMVACQIAKSLFGAPTTIARVRN  101 (453)
T ss_pred             c-----CChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            2     2223334455556666566566555443

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.08  E-value=11  Score=30.36  Aligned_cols=75  Identities=16%  Similarity=0.065  Sum_probs=46.8

Q ss_pred             CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      ..++.+|-.|++.  |   ..+..|++.|.+|+.++.++...+..++.....+   ...++.+|+.+..           
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~   81 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEK   81 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHH
Confidence            3457899999875  4   4456666799999998877544333333222221   1346788988721           


Q ss_pred             CCCceeEEEeCCcc
Q 026903          171 PTELFDLIFDYTFF  184 (231)
Q Consensus       171 ~~~~fD~i~~~~~~  184 (231)
                      .-+..|+++.+...
T Consensus        82 ~~g~iD~lVnnAG~   95 (271)
T PRK06505         82 KWGKLDFVVHAIGF   95 (271)
T ss_pred             HhCCCCEEEECCcc
Confidence            12578999887553

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.01  E-value=3  Score=34.51  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..+.+|+-+|+|. |..+...++ .|.+|+.+|.++...+.+...    +    .++.. .++.+..  ..+|+|+....
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~----G----~~~~~~~~l~~~l--~~aDiVI~t~p  219 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM----G----LSPFHLSELAEEV--GKIDIIFNTIP  219 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C----CeeecHHHHHHHh--CCCCEEEECCC
Confidence            4578999999985 443333333 788999999998766555432    1    22221 1122222  36899996421


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                           ..   -+-+...+.++||++++=..+.+
T Consensus       220 -----~~---~i~~~~l~~~~~g~vIIDla~~p  244 (296)
T PRK08306        220 -----AL---VLTKEVLSKMPPEALIIDLASKP  244 (296)
T ss_pred             -----hh---hhhHHHHHcCCCCcEEEEEccCC
Confidence                 11   12345667889999877666655

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=88.00  E-value=1.9  Score=33.00  Aligned_cols=86  Identities=15%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             CCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--C--CceeEEEeCCcccccC
Q 026903          117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--T--ELFDLIFDYTFFCAIE  188 (231)
Q Consensus       117 cG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~--~~fD~i~~~~~~~~~~  188 (231)
                      |.+|...-.+++    +|+.|+++=-++.-+...          ..+.+.+.|++++..  .  ..||+|++..-...-+
T Consensus         7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~   76 (211)
T COG2910           7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASD   76 (211)
T ss_pred             ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhcCCceEEEeccCCCCC
Confidence            456666555544    999999999887643321          247789999999543  2  3799999865544222


Q ss_pred             -hHHHHHHHHHHHhhcCCCc--EEEEE
Q 026903          189 -PEMRAAWAQKIKDFLKPDG--ELITL  212 (231)
Q Consensus       189 -~~~~~~~l~~~~~~L~pgG--~l~~~  212 (231)
                       .+...+.++.+...|+.-|  +|+++
T Consensus        77 ~~~~~~k~~~~li~~l~~agv~RllVV  103 (211)
T COG2910          77 NDELHSKSIEALIEALKGAGVPRLLVV  103 (211)
T ss_pred             hhHHHHHHHHHHHHHHhhcCCeeEEEE
Confidence             2334556777888887744  35543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=87.92  E-value=3.5  Score=33.86  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC----------CC---------CCceEEEEccCCC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL----------PN---------AKFVSFLKADFFT  168 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~----------~~---------~~~i~~~~~d~~~  168 (231)
                      .+|.-+|+|. | ..+..++..|.+|+.+|.+++.++.+++.....          +.         ..++.+. .|. +
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence            4788899985 3 455666678899999999999998765533221          00         0111111 121 1


Q ss_pred             CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       169 ~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      .  -...|+|+..-. ..  .+....+++++...++|+.+++.
T Consensus        82 ~--~~~aDlVieav~-e~--~~~k~~~~~~l~~~~~~~~il~S  119 (291)
T PRK06035         82 S--LSDADFIVEAVP-EK--LDLKRKVFAELERNVSPETIIAS  119 (291)
T ss_pred             H--hCCCCEEEEcCc-Cc--HHHHHHHHHHHHhhCCCCeEEEE
Confidence            1  134688874321 11  13467788888888888886653

>PRK06940 short chain dehydrogenase; Provisional

Probab=87.87  E-value=12  Score=30.38  Aligned_cols=97  Identities=13%  Similarity=0.030  Sum_probs=56.1

Q ss_pred             cEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------CCCceeE
Q 026903          111 RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTELFDL  177 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~fD~  177 (231)
                      .+|--|+  |..+..+++   .|.+|+.++.++..++...+.....+  .++.++.+|+.+..          ..+.+|+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            4555564  345544443   68899999998876665544443222  35788899988721          1146899


Q ss_pred             EEeCCcccccChH----------HHHHHHHHHHhhcCCCcEEEE
Q 026903          178 IFDYTFFCAIEPE----------MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       178 i~~~~~~~~~~~~----------~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ++.+........+          ....+++.+...++++|.+++
T Consensus        80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~  123 (275)
T PRK06940         80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV  123 (275)
T ss_pred             EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence            9877654321111          112345556666666665443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=87.83  E-value=1.7  Score=36.03  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~  184 (231)
                      ++.+|.-+|.|. |..+..++- .|+.|+.+|+|..-+......+.     .+++...-+..+.. .-...|+++..-.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI  241 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI  241 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence            346888899986 777777776 78899999999888777766553     24666555444421 11368998854322


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      .--  ....-..+++...||||++++
T Consensus       242 pga--kaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         242 PGA--KAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             cCC--CCceehhHHHHHhcCCCcEEE
Confidence            211  111234677889999999876

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.82  E-value=3.1  Score=34.27  Aligned_cols=96  Identities=21%  Similarity=0.064  Sum_probs=52.5

Q ss_pred             cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-CCCCCceEEEEccCCC-CCC-CCceeEEEeCCccc
Q 026903          111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT-WCP-TELFDLIFDYTFFC  185 (231)
Q Consensus       111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~-~~~-~~~fD~i~~~~~~~  185 (231)
                      +|+-+|+|. | .++..|++.|..|+.++. ++.++..++.-.. ........+ ...... ... ...+|+|+..--  
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vilavk--   77 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILAVK--   77 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEEec--
Confidence            688889987 3 355566678889999998 6666655542100 000001110 111111 111 146888874322  


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                         ......+++.+...+.++..++...
T Consensus        78 ---~~~~~~~~~~l~~~~~~~~~ii~~~  102 (305)
T PRK12921         78 ---AYQLDAAIPDLKPLVGEDTVIIPLQ  102 (305)
T ss_pred             ---ccCHHHHHHHHHhhcCCCCEEEEee
Confidence               2234567788888888887666543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.75  E-value=2.5  Score=36.31  Aligned_cols=69  Identities=25%  Similarity=0.157  Sum_probs=48.7

Q ss_pred             CcEEEecCCC-chHHHHh-cCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYDVVAM-ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~~~~l-~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~~  182 (231)
                      ++||-||||. |+.+... ++.+ .+|+..|.+.+..+.+......     +++.++.|+.+...    -..+|+|+...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence            5899999965 5444433 4566 6999999999888887765432     58899999988421    13469988654


Q ss_pred             c
Q 026903          183 F  183 (231)
Q Consensus       183 ~  183 (231)
                      .
T Consensus        77 p   77 (389)
T COG1748          77 P   77 (389)
T ss_pred             C
Confidence            3

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=87.74  E-value=1  Score=38.21  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc--cCCC-C--CCCCceeEE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT-W--CPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~--d~~~-~--~~~~~fD~i  178 (231)
                      .++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-..    .-+.....  ++.+ .  ...+.+|+|
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~----~~i~~~~~~~~~~~~v~~~~~~g~d~v  260 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT----DCVNPKDHDKPIQQVLVEMTDGGVDYT  260 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC----EEEcccccchHHHHHHHHHhCCCCcEE
Confidence            4567899888764 566666666 777 799999999988888653211    00111111  1111 0  112368999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (231)
                      +....  .      ...+....+.|+++ |.++.....
T Consensus       261 id~~g--~------~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         261 FECIG--N------VKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             EECCC--C------hHHHHHHHHhhccCCCeEEEEccC
Confidence            85321  1      13466778889887 988877654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.73  E-value=1.4  Score=32.38  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=24.0

Q ss_pred             EecCCCc--hHHHHhc----CCCCeEEEEeCChHHHHHHHHH
Q 026903          114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL  149 (231)
Q Consensus       114 DiGcG~G--~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~  149 (231)
                      |+|++.|  .....++    .++.+|+++|+++..++..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555443    2567999999999999998888

; PDB: 2PY6_A.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=87.68  E-value=1.2  Score=37.12  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=55.5

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----CCCCCCCCceeEEEe
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----FFTWCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~~~fD~i~~  180 (231)
                      ++.+||-.|+|. |..+..+++ .| .++++++.+++..+.+++.-    . +.+--...+    +........+|+|+.
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g----~-~~~~~~~~~~~~~i~~~~~~~~~dvvld  241 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLG----A-DHVLNASDDVVEEVRELTGGRGADAVID  241 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhC----C-cEEEcCCccHHHHHHHHhCCCCCCEEEE
Confidence            457888888654 444445555 56 68999998888777765421    1 111111111    111222346999985


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...-        ...+....+.|+++|.++.....
T Consensus       242 ~~g~--------~~~~~~~~~~l~~~g~~i~~g~~  268 (340)
T cd05284         242 FVGS--------DETLALAAKLLAKGGRYVIVGYG  268 (340)
T ss_pred             cCCC--------HHHHHHHHHHhhcCCEEEEEcCC
Confidence            3221        13467788899999998876543

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK12744 short chain dehydrogenase; Provisional

Probab=87.64  E-value=12  Score=29.62  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=56.8

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC----hHHHHHHHHHhccCCCCCceEEEEccCCCCC----------
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------  170 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s----~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  170 (231)
                      .++++|-.|++.|   .++..|++.|.+++.++.+    .+..+...+.....  ..++.++.+|+.+..          
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHHHHHH
Confidence            4578998887655   2334444578887777543    22233222222221  135888999998721          


Q ss_pred             -CCCceeEEEeCCccc------ccChHHH-----------HHHHHHHHhhcCCCcEEEE
Q 026903          171 -PTELFDLIFDYTFFC------AIEPEMR-----------AAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       171 -~~~~fD~i~~~~~~~------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~  211 (231)
                       ..+..|+++.+....      ..+.+..           ..+++.+...++++|.+++
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~  143 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT  143 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence             114689998775432      2222221           2345666677777776654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=87.60  E-value=1.4  Score=38.88  Aligned_cols=90  Identities=16%  Similarity=0.001  Sum_probs=55.4

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .+.+++|+-+|+|. |......++ .|.+|+.+|.++.....+...    +    .++  .++.+..  ...|+|++...
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G----~~~--~~leell--~~ADIVI~atG  318 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME----G----YQV--VTLEDVV--ETADIFVTATG  318 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----C----cee--ccHHHHH--hcCCEEEECCC
Confidence            45678999999997 544444443 788999999887654333321    1    121  1222322  35799986532


Q ss_pred             ccccChHHHHHHH-HHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWA-QKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~~~  215 (231)
                      -.+        ++ ......||||++|+-+...
T Consensus       319 t~~--------iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NKD--------IITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             ccc--------ccCHHHHhccCCCcEEEEcCCC
Confidence            111        23 3677889999998766554

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.41  E-value=3.5  Score=34.12  Aligned_cols=90  Identities=18%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+||-.|||. |..+..+++ .|.+++.++.+++..+.+++ ...    +  .++..+  .. +...+|+++.....
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~----~--~~~~~~--~~-~~~~vD~vi~~~~~  235 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LGA----D--WAGDSD--DL-PPEPLDAAIIFAPV  235 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hCC----c--EEeccC--cc-CCCcccEEEEcCCc
Confidence            3456788787764 444444555 78899999998887777744 211    0  111111  11 23468888743111


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                              ...+....+.|+++|.++....
T Consensus       236 --------~~~~~~~~~~l~~~G~~v~~g~  257 (329)
T cd08298         236 --------GALVPAALRAVKKGGRVVLAGI  257 (329)
T ss_pred             --------HHHHHHHHHHhhcCCEEEEEcC
Confidence                    1357788999999999887654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=87.40  E-value=1.7  Score=31.63  Aligned_cols=98  Identities=15%  Similarity=0.139  Sum_probs=55.3

Q ss_pred             EEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEcc-CCCC-CCCCceeEEEeCCcccc
Q 026903          112 ALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKAD-FFTW-CPTELFDLIFDYTFFCA  186 (231)
Q Consensus       112 vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d-~~~~-~~~~~fD~i~~~~~~~~  186 (231)
                      |+-+|+|. | .++..|.+.|..|+.+.-.+ .++..++.--.... ..+..+.... .... .....+|+|+..-=-  
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa--   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA--   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG--
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc--
Confidence            56678876 3 44555556889999999988 56654443211100 0011111111 1111 134579999853211  


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                         .+....++.+...+.+++.+++..-.
T Consensus        78 ---~~~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   78 ---YQLEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             ---GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred             ---cchHHHHHHHhhccCCCcEEEEEeCC
Confidence               23356889999999999887765543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=87.26  E-value=3.2  Score=34.67  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE---c-cCCC----CCCCCce
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---A-DFFT----WCPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~---~-d~~~----~~~~~~f  175 (231)
                      .++.+||-.|+  |.|..+..+++ .|.++++++.+++..+.+++.+..    +  .++.   . +..+    .. ...+
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa----~--~vi~~~~~~~~~~~i~~~~-~~gv  222 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF----D--DAFNYKEEPDLDAALKRYF-PNGI  222 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----c--eeEEcCCcccHHHHHHHhC-CCCc
Confidence            45679998886  45777777777 788999999999888888763321    1  1121   1 2111    11 2468


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|+....         ...+....++|+++|.++....
T Consensus       223 d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         223 DIYFDNVG---------GKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             EEEEECCC---------HHHHHHHHHHhccCcEEEEecc
Confidence            99984321         1246778899999999987654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=87.22  E-value=4  Score=34.49  Aligned_cols=95  Identities=22%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~  184 (231)
                      ++.+||-.|+|. |..+..+++ .|.+++.++.+++....+.+.+..    +. .+...+..... ....+|+++....-
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga----~~-~i~~~~~~~~~~~~~~~D~vid~~g~  254 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA----DD-YLVSSDAAEMQEAADSLDYIIDTVPV  254 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC----cE-EecCCChHHHHHhcCCCcEEEECCCc
Confidence            567888887764 666666776 777888888887765555443321    11 11111100100 01258888843211


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                              ...+..+.++|+++|+++.....
T Consensus       255 --------~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        255 --------FHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             --------hHHHHHHHHHhccCCEEEEECCC
Confidence                    12456678899999998876643

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=87.00  E-value=1.4  Score=37.25  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             CCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCC----CCCCCCceeE
Q 026903          108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~----~~~~~~~fD~  177 (231)
                      ++.+||-.|+| .|..+..+++ .|.. |++++.++...+.+++.- .      ..++..   +..    .......+|+
T Consensus       182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g-~------~~vv~~~~~~~~~~l~~~~~~~~vd~  254 (363)
T cd08279         182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG-A------THTVNASEDDAVEAVRDLTDGRGADY  254 (363)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC-C------eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence            45788888775 3666666666 7775 999999888777765321 1      112211   111    1222346898


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ++....-        ...+....+.|+++|+++....
T Consensus       255 vld~~~~--------~~~~~~~~~~l~~~G~~v~~g~  283 (363)
T cd08279         255 AFEAVGR--------AATIRQALAMTRKGGTAVVVGM  283 (363)
T ss_pred             EEEcCCC--------hHHHHHHHHHhhcCCeEEEEec
Confidence            8843221        1246778889999999876643

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK06128 oxidoreductase; Provisional

Probab=87.00  E-value=8.4  Score=31.60  Aligned_cols=104  Identities=15%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH--HHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI--AIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      +.++++|-.|++.|   .++..|++.|.+|+.+..+..  ..+...+.....+  .++.++.+|+.+...          
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            44578999997554   234445558888887765432  2222222222221  357788999987211          


Q ss_pred             -CCceeEEEeCCcccc-------cChHHH-----------HHHHHHHHhhcCCCcEEEEE
Q 026903          172 -TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~  212 (231)
                       -+..|+++.+.....       ++.+..           ..+++.+...|+++|.++..
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~  190 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT  190 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence             136899988764321       122211           24556666777888876654

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=86.87  E-value=1.1  Score=37.23  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             CCCcEEEe--cCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026903          108 PKGRALVP--GCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (231)
Q Consensus       108 ~~~~vLDi--GcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD  176 (231)
                      ++..+|-+  |+| .|..+..+++ .|.++++++.+++..+.+++.-    .   -.++..   ++.+    ......+|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g----~---~~~i~~~~~~~~~~v~~~~~~~~~d  214 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIG----A---EYVLNSSDPDFLEDLKELIAKLNAT  214 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----C---cEEEECCCccHHHHHHHHhCCCCCc
Confidence            44455554  443 3666677776 7889999999998888887621    1   112221   1111    12234689


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++....     ..    .+....+.|+++|+++.....
T Consensus       215 ~vid~~g-----~~----~~~~~~~~l~~~G~~v~~g~~  244 (324)
T cd08291         215 IFFDAVG-----GG----LTGQILLAMPYGSTLYVYGYL  244 (324)
T ss_pred             EEEECCC-----cH----HHHHHHHhhCCCCEEEEEEec
Confidence            9985322     11    234457788999998876643

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.77  E-value=7.1  Score=32.11  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-------CCCC---------CceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPNA---------KFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~~  171 (231)
                      .+|--||+|.  +..+..++..|..|+..|.+++.++.+.+++..       .+..         .++++ ..|. +.  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~--   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD--   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH--
Confidence            4788999995  455666677899999999999999886654322       1100         12221 2222 11  


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~  213 (231)
                      -...|+|+-. +.+.+  +.+..++..+...+ +|+.++...+
T Consensus        82 ~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         82 FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECC
Confidence            1357888743 23322  56677888888888 7787765533

>PRK07035 short chain dehydrogenase; Provisional

Probab=86.66  E-value=3.9  Score=32.38  Aligned_cols=75  Identities=13%  Similarity=0.015  Sum_probs=50.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.++...+...+.....+  .++.++.+|+.+...           -
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            44578899998876   3445556689999999998877666555443322  347788888877211           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +.+|+++.+..
T Consensus        84 ~~id~li~~ag   94 (252)
T PRK07035         84 GRLDILVNNAA   94 (252)
T ss_pred             CCCCEEEECCC
Confidence            35899887654

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.63  E-value=3.7  Score=32.62  Aligned_cols=76  Identities=18%  Similarity=0.029  Sum_probs=52.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45678999998765   3345556689999999999887766655544332  357788999887211           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            478999876543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.47  E-value=3.9  Score=34.00  Aligned_cols=97  Identities=18%  Similarity=0.070  Sum_probs=52.5

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      ++|+-+|+|.  |.++..|++.|..|+.+..++.  +..+++.... ....+..+....... ......+|+|+..--.+
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~   83 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT   83 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence            6899999996  5667777778888888887652  2222221000 000111111111111 11224689988432211


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                           +...+++.+...+++++.++...
T Consensus        84 -----~~~~~~~~l~~~~~~~~~iv~lq  106 (313)
T PRK06249         84 -----ANALLAPLIPQVAAPDAKVLLLQ  106 (313)
T ss_pred             -----ChHhHHHHHhhhcCCCCEEEEec
Confidence                 12356777788888888776554

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.46  E-value=2.5  Score=35.26  Aligned_cols=93  Identities=20%  Similarity=0.170  Sum_probs=56.8

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC-CCCCCceeEEEeC
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-WCPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~-~~~~~~fD~i~~~  181 (231)
                      ++.+||-.|+|. |..+..+++ .|.+++.++.+++-.+.+++.- .    +  .++..   +... ......+|+++..
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g-~----~--~~i~~~~~~~~~~~~~~~~~d~vi~~  235 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLG-A----H--HYIDTSKEDVAEALQELGGAKLILAT  235 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcC-C----c--EEecCCCccHHHHHHhcCCCCEEEEC
Confidence            457899988654 555566666 7889999999988888775522 1    1  11111   1111 1111358888843


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..    .    ...+....+.|+++|.++.....
T Consensus       236 ~g----~----~~~~~~~~~~l~~~G~~v~~g~~  261 (333)
T cd08296         236 AP----N----AKAISALVGGLAPRGKLLILGAA  261 (333)
T ss_pred             CC----c----hHHHHHHHHHcccCCEEEEEecC
Confidence            11    0    13467788899999998876543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.37  E-value=3.6  Score=34.29  Aligned_cols=98  Identities=17%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCCC-------CCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC-------PTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~-------~~~~f  175 (231)
                      .++..+.-+|+|. |.....-++ .|+ +++|+|+++.-.+.|++--..       +|++- |...+.       -++.+
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT-------e~iNp~d~~~~i~evi~EmTdgGv  263 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT-------EFINPKDLKKPIQEVIIEMTDGGV  263 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc-------eecChhhccccHHHHHHHHhcCCc
Confidence            4557888888886 444444444 665 999999999999999875432       22221 222211       13567


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccCCCC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPISDH  219 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~~~~  219 (231)
                      |.-+  .+..+      ...+++.......| |.-+++..+..++
T Consensus       264 Dysf--Ec~G~------~~~m~~al~s~h~GwG~sv~iGv~~~~~  300 (375)
T KOG0022|consen  264 DYSF--ECIGN------VSTMRAALESCHKGWGKSVVIGVAAAGQ  300 (375)
T ss_pred             eEEE--EecCC------HHHHHHHHHHhhcCCCeEEEEEecCCCc
Confidence            7665  22222      23466677777888 8888877766544

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=86.21  E-value=1.2  Score=37.69  Aligned_cols=95  Identities=15%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC---CCCCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT---WCPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~---~~~~~~f  175 (231)
                      .++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.-..       .++...     +.+   ....+.+
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~v~~~~~~~~  258 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT-------EFVNPKDHDKPVQEVIAEMTGGGV  258 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-------eEEcccccchhHHHHHHHHhCCCC
Confidence            4567899998764 555666666 777 799999999988888653211       111111     111   0112368


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      |+++....-        ...+....+.+++| |.+++.....
T Consensus       259 d~vid~~G~--------~~~~~~~~~~~~~~~g~~v~~g~~~  292 (369)
T cd08301         259 DYSFECTGN--------IDAMISAFECVHDGWGVTVLLGVPH  292 (369)
T ss_pred             CEEEECCCC--------hHHHHHHHHHhhcCCCEEEEECcCC
Confidence            988843211        23456677888996 9988776643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.07  E-value=17  Score=29.50  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             CCCcEEEecCC--C--ch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          108 PKGRALVPGCG--T--GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       108 ~~~~vLDiGcG--~--G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++.+|-.|++  .  |. .+..|++.|.+|+.++.+++..+...+.....+  .. .++.+|+.+..           .
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence            45789999985  2  32 344555689999999988643333333222222  12 56788988831           1


Q ss_pred             CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -+.+|+++.+..+..          .+.++.           ..+.+.+...|+.+|.++.+.
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is  143 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS  143 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence            257899988765321          122222           234456666777778766544

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.03  E-value=15  Score=29.26  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             CCCCcEEEecCC-CchHH----HHhcCCCCeEEEEeCCh--HHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026903          107 LPKGRALVPGCG-TGYDV----VAMASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWC---------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG-~G~~~----~~l~~~~~~v~~iD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------  170 (231)
                      ..++++|-.|+| ++..+    ..|++.|.+|+.++.+.  +.++...+...     .++.++.+|+.+..         
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~~   79 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----EPAPVLELDVTNEEHLASLADRV   79 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----CCCcEEeCCCCCHHHHHHHHHHH
Confidence            345789999984 34444    34455889999988653  43443333221     24678889988731         


Q ss_pred             --CCCceeEEEeCCcccc-------c---ChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026903          171 --PTELFDLIFDYTFFCA-------I---EPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       171 --~~~~fD~i~~~~~~~~-------~---~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                        .-+.+|+++.+..+..       +   +.++.           ..+.+.+...|+++|.++...+
T Consensus        80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~  146 (256)
T PRK07889         80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF  146 (256)
T ss_pred             HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence              1257899988754321       1   11211           1344566677788888776654

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=85.99  E-value=1.7  Score=36.26  Aligned_cols=94  Identities=16%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC----CCCCCCCceeEEEe
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~fD~i~~  180 (231)
                      ++.+||-.|+|. |..+..+++ .| .++++++.++.....+++.-.    ..-+.....+.    ........+|+|+.
T Consensus       166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vld  241 (345)
T cd08286         166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA----THTVNSAKGDAIEQVLELTDGRGVDVVIE  241 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----CceeccccccHHHHHHHHhCCCCCCEEEE
Confidence            456777777653 445555555 77 688999998887777665321    00011111111    11223346999985


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..     ..   ...+..+.+.|+++|.++...
T Consensus       242 ~~-----g~---~~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         242 AV-----GI---PATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             CC-----CC---HHHHHHHHHhccCCcEEEEec
Confidence            32     11   124677789999999987654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK12743 oxidoreductase; Provisional

Probab=85.94  E-value=16  Score=29.07  Aligned_cols=72  Identities=13%  Similarity=-0.018  Sum_probs=43.6

Q ss_pred             CcEEEecCCCc---hHHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CCc
Q 026903          110 GRALVPGCGTG---YDVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL  174 (231)
Q Consensus       110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~~  174 (231)
                      ++||-.|++.|   .++..+++.|.+|+.+.. +....+...+.....+  .++.++.+|+.+...           -+.
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57888887654   223344458888888754 4444444433333322  468899999987321           136


Q ss_pred             eeEEEeCCc
Q 026903          175 FDLIFDYTF  183 (231)
Q Consensus       175 fD~i~~~~~  183 (231)
                      .|.++++..
T Consensus        81 id~li~~ag   89 (256)
T PRK12743         81 IDVLVNNAG   89 (256)
T ss_pred             CCEEEECCC
Confidence            899987654

>PRK06172 short chain dehydrogenase; Provisional

Probab=85.93  E-value=4.4  Score=32.08  Aligned_cols=76  Identities=18%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..+++.|.+|+.++.+++.++...+.....+  .++.++.+|+.+...           -
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            34578899987654   2344455688999999999877665555443322  458899999987210           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +.+|+|+.+...
T Consensus        83 g~id~li~~ag~   94 (253)
T PRK06172         83 GRLDYAFNNAGI   94 (253)
T ss_pred             CCCCEEEECCCC
Confidence            367999877543

>PRK07890 short chain dehydrogenase; Provisional

Probab=85.84  E-value=4.4  Score=32.15  Aligned_cols=75  Identities=16%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      .+++||-.|++.|   .++..|++.|.+|+.++.++...+...+.....+  .++.++..|+.+...           -+
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4578888887654   2344555689999999999877665555443222  357889999987211           14


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      ..|+|+.+...
T Consensus        82 ~~d~vi~~ag~   92 (258)
T PRK07890         82 RVDALVNNAFR   92 (258)
T ss_pred             CccEEEECCcc
Confidence            68999887543

>PRK06484 short chain dehydrogenase; Validated

Probab=85.79  E-value=11  Score=33.54  Aligned_cols=72  Identities=14%  Similarity=0.029  Sum_probs=49.4

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      .++.+|-.|++.|   ..+..|++.|.+|+.++.+...++...+...     .++.++.+|+.+...           -+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREFG   78 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence            4568888888776   4455566689999999998877665544331     246788899887311           14


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      ..|+++.+...
T Consensus        79 ~iD~li~nag~   89 (520)
T PRK06484         79 RIDVLVNNAGV   89 (520)
T ss_pred             CCCEEEECCCc
Confidence            68999877543

>PRK07062 short chain dehydrogenase; Provisional

Probab=85.78  E-value=4.5  Score=32.33  Aligned_cols=78  Identities=14%  Similarity=0.019  Sum_probs=51.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.++.+|-.|++.|   ..+..+++.|.+|+.++.+++.++...+.........++.++.+|+.+..           .-
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            44678999998765   33455556899999999998777665554433211135778889988831           11


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        86 g~id~li~~Ag~   97 (265)
T PRK07062         86 GGVDMLVNNAGQ   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            468998876543

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=85.77  E-value=3.5  Score=34.72  Aligned_cols=98  Identities=13%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD  176 (231)
                      .++..|.-+|||. |..+..-++ .|. +++++|++++-++.|++--..       ++++.    |+.+   ...++..|
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT-------~~vn~~~~~~vv~~i~~~T~gG~d  256 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT-------HFVNPKEVDDVVEAIVELTDGGAD  256 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc-------eeecchhhhhHHHHHHHhcCCCCC
Confidence            4567999999986 666666665 554 899999999999999885432       23332    2222   11123566


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      ..+..  ...      ...++....++.++|..+++..+..++
T Consensus       257 ~~~e~--~G~------~~~~~~al~~~~~~G~~v~iGv~~~~~  291 (366)
T COG1062         257 YAFEC--VGN------VEVMRQALEATHRGGTSVIIGVAGAGQ  291 (366)
T ss_pred             EEEEc--cCC------HHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            66521  111      235677777778899999988877654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.73  E-value=4.2  Score=32.55  Aligned_cols=77  Identities=17%  Similarity=0.059  Sum_probs=53.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      ...++++|-.|++.|   ..+..|++.|.+|+.++.++..++...+.....+  .++.++.+|+.+...           
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345678999998775   3455566689999999998877766655554322  358889999987211           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+.+|+++.+...
T Consensus        85 ~~~id~li~~ag~   97 (265)
T PRK07097         85 VGVIDILVNNAGI   97 (265)
T ss_pred             CCCCCEEEECCCC
Confidence            1468999877554

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.72  E-value=3  Score=33.05  Aligned_cols=63  Identities=11%  Similarity=0.064  Sum_probs=43.2

Q ss_pred             cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHH-HhccCCCCCceEEEEccCCCC---CC--CCceeEEEe
Q 026903          111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADFFTW---CP--TELFDLIFD  180 (231)
Q Consensus       111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~-~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~i~~  180 (231)
                      +++-+|||. | ..+..|.+.|..|+.+|.+++.++.... ..       ..+.+.+|..+.   ..  -..+|++++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            577788875 3 3445555689999999999998777332 22       367888888882   11  236888774

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.67  E-value=3.3  Score=31.92  Aligned_cols=72  Identities=26%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             CCCCcEEEecCC-CchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCG-TGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG-~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .....||-+|.= +|.+...+++...+|+.+|+.|.+-...         .+++.|...  . .++.+.+|+|+..-.+.
T Consensus        43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l---------p~~v~Fr~~--~-~~~~G~~DlivDlTGlG  110 (254)
T COG4017          43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL---------PNNVKFRNL--L-KFIRGEVDLIVDLTGLG  110 (254)
T ss_pred             cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC---------CCCccHhhh--c-CCCCCceeEEEeccccC
Confidence            345799999875 5888888887788999999999764322         234666544  2 23456899999887777


Q ss_pred             ccChH
Q 026903          186 AIEPE  190 (231)
Q Consensus       186 ~~~~~  190 (231)
                      -..|+
T Consensus       111 G~~Pe  115 (254)
T COG4017         111 GIEPE  115 (254)
T ss_pred             CCCHH
Confidence            77665

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=85.57  E-value=2.3  Score=36.42  Aligned_cols=91  Identities=24%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHH-HHHHHHHhccCCCCCceEEEEc-c---CCCCCCCCceeEEEe
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKA-D---FFTWCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~-i~~a~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~fD~i~~  180 (231)
                      ++.+||-.|+|. |..+..+++ .|.++++++.+++. .+.+++.    +. +  .++.. +   +.+..  ..+|+|+.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l----Ga-~--~~i~~~~~~~v~~~~--~~~D~vid  248 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL----GA-D--SFLVTTDSQKMKEAV--GTMDFIID  248 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC----CC-c--EEEcCcCHHHHHHhh--CCCcEEEE
Confidence            567888888865 666677776 78889999887553 4455332    11 1  11111 1   11111  25898884


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...-        ...+....+.++++|.++.....
T Consensus       249 ~~G~--------~~~~~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        249 TVSA--------EHALLPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             CCCc--------HHHHHHHHHhhcCCCEEEEEccC
Confidence            3211        12466778899999999877654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.52  E-value=9.3  Score=31.35  Aligned_cols=95  Identities=16%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~  171 (231)
                      .+|.-||+|.  +..+..++..|..|+..|.+++.++.+.+.....       + ..        .++.+. .+.. .  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-~--   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE-D--   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-H--
Confidence            4788899986  3455566668899999999999988765432211       1 00        112221 2221 1  


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      -...|+|+..- ..  +.+.+..+++.+...++|+.+++.
T Consensus        81 ~~~aD~Vieav-pe--~~~~k~~~~~~l~~~~~~~~ii~s  117 (292)
T PRK07530         81 LADCDLVIEAA-TE--DETVKRKIFAQLCPVLKPEAILAT  117 (292)
T ss_pred             hcCCCEEEEcC-cC--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence            13578887421 11  114456778889999999987753

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=85.52  E-value=3.8  Score=38.34  Aligned_cols=97  Identities=15%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~  171 (231)
                      .+|--||+|+  +..+..++..|..|+.+|.+++.++.+.++....       + .        ..++++- .|. +  .
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~--~  389 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A--G  389 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H--H
Confidence            5899999996  4556666778999999999999998876654321       1 0        0123222 111 1  1


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -...|+|+= .+++.+  +.+.++++++-.+++|+.+|...+
T Consensus       390 ~~~aDlViE-av~E~l--~~K~~vf~~l~~~~~~~~ilasnT  428 (714)
T TIGR02437       390 FDNVDIVVE-AVVENP--KVKAAVLAEVEQHVREDAILASNT  428 (714)
T ss_pred             hcCCCEEEE-cCcccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence            135788873 244444  677899999999999999887644

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=85.49  E-value=2.4  Score=36.93  Aligned_cols=95  Identities=19%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             CcEEEecCCCc--hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CC---------CCceEEEEccCCCCCCCCce
Q 026903          110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PN---------AKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus       110 ~~vLDiGcG~G--~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~---------~~~i~~~~~d~~~~~~~~~f  175 (231)
                      ++|--+|.|.-  ..+..|++.|++|+++|.+++.++..+......   ++         ..++.+. .      .....
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~------~~~~a   76 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-T------TPEPA   76 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-c------ccccC
Confidence            46788888853  334445668999999999999888643211000   00         0011111 0      11246


Q ss_pred             eEEEeCCccc-----ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          176 DLIFDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       176 D~i~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      |+|+..-.-.     ..+-......++.+...|++|.+++.
T Consensus        77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~  117 (415)
T PRK11064         77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL  117 (415)
T ss_pred             CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE
Confidence            7777432211     01114556677888899988876654

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=85.46  E-value=1.6  Score=36.89  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=55.7

Q ss_pred             CCCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+| .|..+..+++ .|.+ +++++.+++..+.+++.- .      ..++..+-.+       ......+|
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~~d  258 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-A------THTVNAAKEDAVAAIREITGGRGVD  258 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-C------ceEecCCcccHHHHHHHHhCCCCCC
Confidence            345677777665 3555555665 6776 999999988887775421 1      1122221111       12234699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+....     ..   ..+..+.++|+++|.++....
T Consensus       259 ~vld~vg-----~~---~~~~~~~~~l~~~G~~v~~g~  288 (367)
T cd08263         259 VVVEALG-----KP---ETFKLALDVVRDGGRAVVVGL  288 (367)
T ss_pred             EEEEeCC-----CH---HHHHHHHHHHhcCCEEEEEcc
Confidence            9985321     11   146778889999999877653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.44  E-value=18  Score=29.25  Aligned_cols=104  Identities=17%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             CCCcEEEecCC-CchH----HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          108 PKGRALVPGCG-TGYD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       108 ~~~~vLDiGcG-~G~~----~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++.+|-.|++ ++..    +..|++.|.+|+.+..++...+.+.+.....+   ...++.+|+.+..           .
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence            45688999975 2333    44555689999888765433333333322222   2456788987721           1


Q ss_pred             CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026903          172 TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      -+..|+++.+..+..          .+.+..           ..+++.+...|+.+|.++....
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss  149 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY  149 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            246899998754321          122211           2444555667777788766553

>PRK08339 short chain dehydrogenase; Provisional

Probab=85.28  E-value=5.5  Score=32.00  Aligned_cols=76  Identities=24%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------CCC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  173 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.++..++...+...... ..++.++.+|+.+..          .-+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            45678898888765   3455666689999999999887766655443211 235888999998831          114


Q ss_pred             ceeEEEeCCc
Q 026903          174 LFDLIFDYTF  183 (231)
Q Consensus       174 ~fD~i~~~~~  183 (231)
                      ..|+++.+..
T Consensus        85 ~iD~lv~nag   94 (263)
T PRK08339         85 EPDIFFFSTG   94 (263)
T ss_pred             CCcEEEECCC
Confidence            6898887654

>PRK06484 short chain dehydrogenase; Validated

Probab=85.20  E-value=16  Score=32.51  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~  173 (231)
                      .++.+|-.|++.|   ..+..|++.|.+|+.++.++..++...+...     .++..+.+|+.+..      .     -+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g  342 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG  342 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4578888888766   3455566689999999998877766554432     24567888888721      0     14


Q ss_pred             ceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+|+++.+....       ..+.+..           ..+++.+...|+.+|.++++.
T Consensus       343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is  400 (520)
T PRK06484        343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG  400 (520)
T ss_pred             CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence            689998765432       1122221           133555566667778776543

>PRK06182 short chain dehydrogenase; Validated

Probab=85.00  E-value=13  Score=29.91  Aligned_cols=69  Identities=19%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CCc
Q 026903          109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TEL  174 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~~  174 (231)
                      ++++|-.|++.|   .++..+++.|.+|++++.+++.++....        .+++++.+|+.+..      .     .+.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~   74 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEGR   74 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            457888886544   2233344588999999998776543321        13778889988821      1     136


Q ss_pred             eeEEEeCCccc
Q 026903          175 FDLIFDYTFFC  185 (231)
Q Consensus       175 fD~i~~~~~~~  185 (231)
                      .|+++.+....
T Consensus        75 id~li~~ag~~   85 (273)
T PRK06182         75 IDVLVNNAGYG   85 (273)
T ss_pred             CCEEEECCCcC
Confidence            89999876543

>PRK06914 short chain dehydrogenase; Provisional

Probab=84.97  E-value=5.8  Score=31.97  Aligned_cols=75  Identities=15%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CCce
Q 026903          109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TELF  175 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~f  175 (231)
                      ++++|-.|++.|   .++..|++.|++|++++.++...+...+.....+...++.++.+|+.+...          -+..
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   82 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI   82 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence            356788886554   233445568999999998877665554433322223468899999988321          1357


Q ss_pred             eEEEeCCc
Q 026903          176 DLIFDYTF  183 (231)
Q Consensus       176 D~i~~~~~  183 (231)
                      |.|+.+..
T Consensus        83 d~vv~~ag   90 (280)
T PRK06914         83 DLLVNNAG   90 (280)
T ss_pred             eEEEECCc
Confidence            88887644

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=84.93  E-value=2.7  Score=33.14  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      ..++.+. .+.+.-|++||.|.|..+..+...|. +...+|.+...+.-.+...+...  .+..+..+|+..
T Consensus        40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            4444443 45668999999999999999998775 78888998888777665544332  345666666554

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=84.90  E-value=3.1  Score=39.02  Aligned_cols=98  Identities=8%  Similarity=0.057  Sum_probs=65.9

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~  171 (231)
                      .+|--||+|+  +..+..++..|..|+.+|.+++.++.+.+++...       + ..        .++++. .|+..   
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~---  411 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG---  411 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence            5899999996  4556666778999999999999998876654321       1 00        123322 12211   


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      -...|+|+= .+++.+  +.+.++++++-+.++|+.+|...+-
T Consensus       412 ~~~aDlViE-Av~E~l--~~K~~vf~~l~~~~~~~~ilasNTS  451 (737)
T TIGR02441       412 FKNADMVIE-AVFEDL--SLKHKVIKEVEAVVPPHCIIASNTS  451 (737)
T ss_pred             hccCCeehh-hccccH--HHHHHHHHHHHhhCCCCcEEEEcCC
Confidence            135787762 344444  6778999999999999998876553

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.88  E-value=4.6  Score=37.83  Aligned_cols=97  Identities=19%  Similarity=0.138  Sum_probs=64.8

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~  171 (231)
                      .+|--||+|+  ...+..++..|..|+.+|.+++.++.+.++....       + .        ..++++. .|+..   
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~---  389 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG---  389 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---
Confidence            5899999998  4556666778999999999999998776543221       1 0        1133322 22211   


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -...|+|+= .+.+.+  +.+.++++++...++|+.+|...+
T Consensus       390 ~~~aDlViE-av~E~l--~~K~~vf~~l~~~~~~~~ilasNT  428 (715)
T PRK11730        390 FERVDVVVE-AVVENP--KVKAAVLAEVEQKVREDTILASNT  428 (715)
T ss_pred             hcCCCEEEe-cccCcH--HHHHHHHHHHHhhCCCCcEEEEcC
Confidence            135788773 234444  677899999999999998876644

>PRK07677 short chain dehydrogenase; Provisional

Probab=84.84  E-value=4.9  Score=31.88  Aligned_cols=71  Identities=14%  Similarity=0.067  Sum_probs=47.3

Q ss_pred             CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCce
Q 026903          110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF  175 (231)
Q Consensus       110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~f  175 (231)
                      +++|-.|++.|   ..+..+++.|.+|+.++.++...+...+.....+  .++.++.+|+.+..           .-+..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            57888888665   2344555689999999998876665554443322  35888999987721           01368


Q ss_pred             eEEEeCC
Q 026903          176 DLIFDYT  182 (231)
Q Consensus       176 D~i~~~~  182 (231)
                      |.++.+.
T Consensus        80 d~lI~~a   86 (252)
T PRK07677         80 DALINNA   86 (252)
T ss_pred             cEEEECC
Confidence            9988764

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=84.81  E-value=5.9  Score=32.98  Aligned_cols=91  Identities=13%  Similarity=0.011  Sum_probs=56.0

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC----CC-----CCCCCceeEE
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FT-----WCPTELFDLI  178 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~-----~~~~~~fD~i  178 (231)
                      ++|+-+|+|.  |+++..|++.|..|+.+-.++. ++..+++-        +.+....-    ..     ......+|+|
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~G--------L~i~~~~~~~~~~~~~~~~~~~~~~~Dlv   71 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKG--------LRIEDEGGNFTTPVVAATDAEALGPADLV   71 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCC--------eEEecCCCccccccccccChhhcCCCCEE
Confidence            4788999997  6778888888855555555454 66666541        22222211    01     1122479999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +..-=     .-+...++..+...+++...+++..-
T Consensus        72 iv~vK-----a~q~~~al~~l~~~~~~~t~vl~lqN  102 (307)
T COG1893          72 IVTVK-----AYQLEEALPSLAPLLGPNTVVLFLQN  102 (307)
T ss_pred             EEEec-----cccHHHHHHHhhhcCCCCcEEEEEeC
Confidence            83211     12446788999999999998776553

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=84.76  E-value=2.9  Score=34.43  Aligned_cols=92  Identities=17%  Similarity=0.154  Sum_probs=57.0

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-C--------CceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~  171 (231)
                      .+|--||+|. | ..+..++..|.+|+++|.+++.++.+++...       ..+. .        .++.+ ..+. +.  
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~--   80 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-EE--   80 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-HH--
Confidence            4688889985 3 5556666788999999999998876654322       1110 0        01111 1121 11  


Q ss_pred             CCceeEEEeCCcccccC--hHHHHHHHHHHHhhcCCCcEEE
Q 026903          172 TELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      -...|+|+.     .++  ++....++.++...++|+.+|+
T Consensus        81 ~~~aD~Vie-----av~e~~~~k~~v~~~l~~~~~~~~il~  116 (295)
T PLN02545         81 LRDADFIIE-----AIVESEDLKKKLFSELDRICKPSAILA  116 (295)
T ss_pred             hCCCCEEEE-----cCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence            134688874     233  4666788888888889988665

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=84.73  E-value=18  Score=28.83  Aligned_cols=111  Identities=20%  Similarity=0.145  Sum_probs=72.4

Q ss_pred             CCCCCcEEEecCCCch-----HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------C----
Q 026903          106 ALPKGRALVPGCGTGY-----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C----  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~-----~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~----  170 (231)
                      .+.++++|-.|-..-+     .+..+.+.|+++...=..++.-+..++..+..+   .-.++++|+.+.      +    
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~---s~~v~~cDV~~d~~i~~~f~~i~   79 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELG---SDLVLPCDVTNDESIDALFATIK   79 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhcc---CCeEEecCCCCHHHHHHHHHHHH
Confidence            3456788888877642     234455588888777777776666666665553   234688888771      1    


Q ss_pred             -CCCceeEEEeCCcccc---------------------cChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          171 -PTELFDLIFDYTFFCA---------------------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       171 -~~~~fD~i~~~~~~~~---------------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                       .=+.+|.++....|..                     ++.-....+.+.+..+|.+||-++..+|-...+
T Consensus        80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r  150 (259)
T COG0623          80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER  150 (259)
T ss_pred             HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee
Confidence             1147888885433321                     111122577888889999999999999977543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=84.51  E-value=6.9  Score=32.45  Aligned_cols=94  Identities=14%  Similarity=0.078  Sum_probs=55.2

Q ss_pred             cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      +|.-+|+|.  +..+..|++.|..|+.+|.++..++..++......      ...++.+. .+..+.  ....|+|+.. 
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~D~vi~~-   78 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEA--LADADLILVA-   78 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHH--HhCCCEEEEe-
Confidence            677888875  34455566688899999999888776665321100      00011111 111111  1356888743 


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                          +++.....++..+...++++.+++..
T Consensus        79 ----v~~~~~~~v~~~l~~~~~~~~~vi~~  104 (325)
T PRK00094         79 ----VPSQALREVLKQLKPLLPPDAPIVWA  104 (325)
T ss_pred             ----CCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence                33345567788888888888776644

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=84.47  E-value=4.4  Score=32.75  Aligned_cols=90  Identities=21%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             CCcEEEecCCCch-------HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeC
Q 026903          109 KGRALVPGCGTGY-------DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (231)
Q Consensus       109 ~~~vLDiGcG~G~-------~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~  181 (231)
                      .++||-+|+|+-.       ...++...+..++-.|+.+-             +++.-..+.+|.....++..+|+|++-
T Consensus        62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~~k~DlIiSD  128 (299)
T PF06460_consen   62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMPPDKFDLIISD  128 (299)
T ss_dssp             T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEESS-EEEEEE-
T ss_pred             CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCCCCcccEEEEe
Confidence            4899999999743       34455557788888888653             223345678898887778899999975


Q ss_pred             Cc--------ccccChH-HHHHHHHHHHhhcCCCcEEEE
Q 026903          182 TF--------FCAIEPE-MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       182 ~~--------~~~~~~~-~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      .-        ....+.+ ...-+..-+.+.|+-||.+.+
T Consensus       129 mYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai  167 (299)
T PF06460_consen  129 MYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI  167 (299)
T ss_dssp             ---TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence            32        1112222 223455667789999999876

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.46  E-value=5.9  Score=37.08  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             CcEEEecCCC--chHHHHhc-CCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCC
Q 026903          110 GRALVPGCGT--GYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWC  170 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~-~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~  170 (231)
                      .+|.-||+|+  ...+..++ ..|..|+.+|.+++.++.+.+++...       + .        ..++++. .|. +. 
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~-  386 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG-  386 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH-
Confidence            5899999998  35555566 67999999999999988876544321       1 0        0133333 122 11 


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       -...|+|+= .+++.+  +.+.++++++-+.++|+.+|...+
T Consensus       387 -~~~aDlViE-av~E~~--~~K~~v~~~le~~~~~~~ilasnT  425 (708)
T PRK11154        387 -FKHADVVIE-AVFEDL--ALKQQMVAEVEQNCAPHTIFASNT  425 (708)
T ss_pred             -hccCCEEee-cccccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence             135788873 234443  677899999999999999887644

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=84.40  E-value=2.3  Score=35.62  Aligned_cols=91  Identities=15%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~  177 (231)
                      ++.+||-.|+|. |..+..+++ .|. +|+.++.+++..+.+.+. ..    +  .++...-.+       .... .+|+
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~----~--~~~~~~~~~~~~~~~~~~~~-~~d~  246 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA----D--VVVNGSDPDAAKRIIKAAGG-GVDA  246 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC----c--EEecCCCccHHHHHHHHhCC-CCcE
Confidence            457888887753 556666666 777 799999988887777542 11    0  122211111       1122 6899


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ++.....        ...+....+.|+++|.++....
T Consensus       247 vid~~g~--------~~~~~~~~~~l~~~g~~v~~g~  275 (350)
T cd08240         247 VIDFVNN--------SATASLAFDILAKGGKLVLVGL  275 (350)
T ss_pred             EEECCCC--------HHHHHHHHHHhhcCCeEEEECC
Confidence            8843221        1347788999999999876543

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=84.26  E-value=10  Score=32.52  Aligned_cols=115  Identities=14%  Similarity=0.081  Sum_probs=63.0

Q ss_pred             CCCcEEEecCCCch----HHHHhcC-----CCCeEEEEeC----ChHHHHHHHHHhccCC--CCCceEEEEc---cCCCC
Q 026903          108 PKGRALVPGCGTGY----DVVAMAS-----PERYVVGLEI----SDIAIKKAEELSSSLP--NAKFVSFLKA---DFFTW  169 (231)
Q Consensus       108 ~~~~vLDiGcG~G~----~~~~l~~-----~~~~v~~iD~----s~~~i~~a~~~~~~~~--~~~~i~~~~~---d~~~~  169 (231)
                      ..-+|+|+|.|.|.    +...|+.     +..++++++.    +...++...+++.+..  +.-..+|...   ++.+.
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            34699999999994    3455554     2238999999    7777766666543321  1112344332   22222


Q ss_pred             C------CCCceeEEEeCCcccccCh------HHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCCC
Q 026903          170 C------PTELFDLIFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK  226 (231)
Q Consensus       170 ~------~~~~fD~i~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~  226 (231)
                      .      ..+..=+|-|...+||+..      ..+..+|+.+ +.|+|.-++ +++..  .+.+.|+|-
T Consensus       190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv-~~E~e--a~~n~~~F~  254 (374)
T PF03514_consen  190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVV-LVEQE--ADHNSPSFL  254 (374)
T ss_pred             CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEE-EEeec--CCCCCCchH
Confidence            1      1233444445566788752      1244566555 477999544 44443  334556653

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK09072 short chain dehydrogenase; Provisional

Probab=84.25  E-value=7.1  Score=31.16  Aligned_cols=74  Identities=11%  Similarity=0.065  Sum_probs=50.6

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CCc
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TEL  174 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~  174 (231)
                      +++++|-.|++.|   ..+..+++.|.+|++++.+++.++...... ..  ..++.++.+|+.+...          -+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence            4568888887654   244555668999999999988776665444 21  2468899999988321          145


Q ss_pred             eeEEEeCCcc
Q 026903          175 FDLIFDYTFF  184 (231)
Q Consensus       175 fD~i~~~~~~  184 (231)
                      .|.++.+...
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            7999887544

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.14  E-value=9.8  Score=31.88  Aligned_cols=101  Identities=19%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             CCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEE-EccCCCCCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .|+++|--+|.| -|..+..+++ .|.+|+++|-+..--+.+-+.+....   -+.+. ..|+.+.. .+..|.++..-.
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~---fv~~~~d~d~~~~~-~~~~dg~~~~v~  255 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV---FVDSTEDPDIMKAI-MKTTDGGIDTVS  255 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce---eEEecCCHHHHHHH-HHhhcCcceeee
Confidence            366666666654 6999999998 89999999999866666655543221   12221 12222211 123444332111


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                        .+    ....+..+..+||++|.++++..+..
T Consensus       256 --~~----a~~~~~~~~~~lk~~Gt~V~vg~p~~  283 (360)
T KOG0023|consen  256 --NL----AEHALEPLLGLLKVNGTLVLVGLPEK  283 (360)
T ss_pred             --ec----cccchHHHHHHhhcCCEEEEEeCcCC
Confidence              01    01235668899999999999988775

>PRK12742 oxidoreductase; Provisional

Probab=83.92  E-value=18  Score=28.10  Aligned_cols=100  Identities=12%  Similarity=0.040  Sum_probs=54.7

Q ss_pred             CCCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCce
Q 026903          107 LPKGRALVPGCGTG--Y-DVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~f  175 (231)
                      +.+++||-.|++.|  . .+..|++.|.+|+.+.. +++..+...+..       .+.++..|+.+..       ..+.+
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~i   76 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVRKSGAL   76 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHHHhCCC
Confidence            34578998887554  2 33445558888887754 344333322221       2456778876621       12458


Q ss_pred             eEEEeCCccccc------ChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFCAI------EPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~~~------~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+++.+......      +.++.           ..+++.+...++.+|.+++..
T Consensus        77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  131 (237)
T PRK12742         77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG  131 (237)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            998877543221      12221           123355666677778776543

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=83.84  E-value=3.7  Score=33.26  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             CCCCcEEE--ecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALV--PGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLD--iGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++..||-  ...|.|....++++ .+.++++.--+.+-.+.|+++-..+.    |....-|+.+    .......|+++
T Consensus       145 kpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~----I~y~~eD~v~~V~kiTngKGVd~vy  220 (336)
T KOG1197|consen  145 KPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHP----IDYSTEDYVDEVKKITNGKGVDAVY  220 (336)
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcce----eeccchhHHHHHHhccCCCCceeee
Confidence            35555554  45567888888887 78899999999999999998876553    4445555544    22345789988


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+-.-         .-++.-..+|||+|.++.....
T Consensus       221 DsvG~---------dt~~~sl~~Lk~~G~mVSfG~a  247 (336)
T KOG1197|consen  221 DSVGK---------DTFAKSLAALKPMGKMVSFGNA  247 (336)
T ss_pred             ccccc---------hhhHHHHHHhccCceEEEeccc
Confidence            54332         2346677899999998765443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.81  E-value=4.8  Score=33.37  Aligned_cols=93  Identities=15%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-CC----------CCceEEEEccCCCCCCCCcee
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-PN----------AKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-~~----------~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      .+|.-||+|.  +..+..++..|..|+++|.+++.++.+++..... +.          ..++.+ ..|..+.  ....|
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--~~~aD   81 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA--VSGAD   81 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH--hccCC
Confidence            4788899985  3455666678889999999999988877632110 00          001111 1121111  13568


Q ss_pred             EEEeCCcccccCh--HHHHHHHHHHHhhcCCCcEEE
Q 026903          177 LIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       177 ~i~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +|+..     +++  +....++..+...++++.+++
T Consensus        82 lVi~a-----v~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         82 LVIEA-----VPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             EEEEe-----ccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence            88742     222  235677888887777766544

>PRK08507 prephenate dehydrogenase; Validated

Probab=83.81  E-value=5.2  Score=32.57  Aligned_cols=83  Identities=25%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             cEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          111 RALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       111 ~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      +|.-||+|.  |.++..+.+.|.  .|+++|.+++.++.+.+.    +.   +.. ..+..+.  . ..|+|+..     
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~---~~~-~~~~~~~--~-~aD~Vila-----   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL---VDE-IVSFEEL--K-KCDVIFLA-----   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC---Ccc-cCCHHHH--h-cCCEEEEe-----
Confidence            566788876  445566666664  799999999887766532    11   101 1121121  1 26887732     


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEE
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      ++++....++..+.. ++++..++
T Consensus        66 vp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         66 IPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             CcHHHHHHHHHHHhc-cCCCCEEE
Confidence            455556677777777 77776443

>PRK09186 flagellin modification protein A; Provisional

Probab=83.80  E-value=6.3  Score=31.20  Aligned_cols=75  Identities=17%  Similarity=0.100  Sum_probs=47.6

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~  173 (231)
                      .+++||-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+........+.++.+|+.+..      .     -+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3568888887554   22444555889999999988777665544422111234677889998721      1     13


Q ss_pred             ceeEEEeCC
Q 026903          174 LFDLIFDYT  182 (231)
Q Consensus       174 ~fD~i~~~~  182 (231)
                      ..|+++.+.
T Consensus        83 ~id~vi~~A   91 (256)
T PRK09186         83 KIDGAVNCA   91 (256)
T ss_pred             CccEEEECC
Confidence            479998765

>PRK05855 short chain dehydrogenase; Validated

Probab=83.78  E-value=16  Score=32.70  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CCc
Q 026903          109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL  174 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~~  174 (231)
                      +.++|-+|+..|   ..+..|++.|.+|+.++.+....+...+.....+  .++.++.+|+.+...           .+.
T Consensus       315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            367888887544   2344455689999999999877666555443332  358889999988321           236


Q ss_pred             eeEEEeCCcc
Q 026903          175 FDLIFDYTFF  184 (231)
Q Consensus       175 fD~i~~~~~~  184 (231)
                      .|+++.+...
T Consensus       393 id~lv~~Ag~  402 (582)
T PRK05855        393 PDIVVNNAGI  402 (582)
T ss_pred             CcEEEECCcc
Confidence            8999987654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=83.73  E-value=0.93  Score=34.41  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=28.7

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHH
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIK  144 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~  144 (231)
                      .+.+.+|.-+|+|. |+....+++ .|.+|+++|.+.....
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence            45578999999986 555555554 8889999999988655

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK10083 putative oxidoreductase; Provisional

Probab=83.70  E-value=3.1  Score=34.64  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEe
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~  180 (231)
                      .++.+||-.|+|. |..+..+++  .|. .++++|.+++..+.+++.-...-    +.....++.....  ...+|+|+.
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~----i~~~~~~~~~~~~~~g~~~d~vid  234 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV----INNAQEPLGEALEEKGIKPTLIID  234 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEE----ecCccccHHHHHhcCCCCCCEEEE
Confidence            3457888899764 556666666  377 58889999988888776422110    1111111111111  113457764


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...-        ...+....++|+++|.++.....
T Consensus       235 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        235 AACH--------PSILEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             CCCC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence            2210        12467788999999999887654

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=83.66  E-value=3.7  Score=34.00  Aligned_cols=96  Identities=14%  Similarity=0.006  Sum_probs=66.9

Q ss_pred             CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcccccChHHHHH
Q 026903          119 TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAA  194 (231)
Q Consensus       119 ~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~~~~~~~~~~~~  194 (231)
                      .|...-++++ .|.+|+|+--+++-++++.+.+.   .+.-|+....|+.+..   .++..|+.|-+     +-    -.
T Consensus       163 VGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lG---fD~~idyk~~d~~~~L~~a~P~GIDvyfeN-----VG----g~  230 (340)
T COG2130         163 VGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELG---FDAGIDYKAEDFAQALKEACPKGIDVYFEN-----VG----GE  230 (340)
T ss_pred             cchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcC---CceeeecCcccHHHHHHHHCCCCeEEEEEc-----CC----ch
Confidence            4888889998 88999999999999999987442   2223555555555511   23579998843     22    23


Q ss_pred             HHHHHHhhcCCCcEEEEEEccCCCCCCCCCCC
Q 026903          195 WAQKIKDFLKPDGELITLMFPISDHVGGPPYK  226 (231)
Q Consensus       195 ~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~  226 (231)
                      .++.+...|++.+++.++.....+....+|+.
T Consensus       231 v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~g  262 (340)
T COG2130         231 VLDAVLPLLNLFARIPVCGAISQYNAPELPPG  262 (340)
T ss_pred             HHHHHHHhhccccceeeeeehhhcCCCCCCCC
Confidence            46778899999999998877665554555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
3lcc_A	235	Structure Of A Sam-Dependent Halide Methyltransfera		7e-65
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		2e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		3e-04

>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From Arabidopsis Thaliana Length = 235

Iteration: 1
 Score =  243 bits (620), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 140/186 (75%), Gaps = 4/186 (2%)
Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62
Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122
Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182
Query: 225 YKVSVS 230
           YKV VS
Sbjct: 183 YKVDVS 188

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           LH     P G + L  GCG G   V +A  +P+  +  ++IS  +++KA E ++     K
Sbjct: 29  LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIK 87
Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRA--AWAQKIKDFLKPDGELITL 212
            V FL+A+ F+  P E  D  FD+ F C +   +++     + +K  LKP G +  +
Sbjct: 88  NVKFLQANIFSL-PFE--DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 89  WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148
           WD G  + II    Q     +   L  GCG GY    ++      VG++IS++ I+K +E
Sbjct: 35  WDSGSRSTIIPFFEQY-VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKE 93
Query: 149 LSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
                P+   +SF+K D  +     E F+ I         E  +RA    +IK  LK DG
Sbjct: 94  RGEG-PD---LSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRA--LNEIKRVLKSDG 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
3lcc_A	235	Putative methyl chloride transferase; halide methy	6e-60
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	2e-33
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	1e-25
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-21
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	4e-20
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-17
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-14
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	2e-12
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-11
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-11
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-10
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-10
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	3e-10
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-10
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	9e-10
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-09
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	5e-09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	8e-09
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-08
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-07
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	4e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	5e-07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	8e-07
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	8e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	1e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	1e-06
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	1e-06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-06
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	2e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-06
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	3e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	3e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	4e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	4e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-06
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	8e-06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	9e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-05
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-05
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	3e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	4e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	4e-05
2b3t_A	276	Protein methyltransferase HEMK; translation termin	8e-05
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	8e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	8e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	9e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	2e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	3e-04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	5e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	9e-04

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score =  187 bits (477), Expect = 6e-60
 Identities = 114/189 (60%), Positives = 139/189 (73%), Gaps = 1/189 (0%)

Query: 44  MGKNREEVENDNVIKSHPRVNKLQQLMHIE-SSGGWEKCWEEGLTPWDIGQPAPIIVHLH 102
           M + ++  +  N     P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL 
Sbjct: 1   MAEEQQNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLV 60

Query: 103 QSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL 162
            + +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+
Sbjct: 61  DTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFV 120

Query: 163 KADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222
           K D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGG
Sbjct: 121 KEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG 180

Query: 223 PPYKVSVSE 231
           PPYKV VS 
Sbjct: 181 PPYKVDVST 189

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252

 Score =  120 bits (301), Expect = 2e-33
 Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 27/211 (12%)

Query: 43  KMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIV-HL 101
           K+  +   +  D        V K  Q++ +E    W++ W      +   Q   ++  HL
Sbjct: 5   KIHHHHHHMSLDMKEHPDAEVQK-NQVLTLE---DWKEKWVTRHISFHQEQGHQLLKKHL 60

Query: 102 HQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA---------EELSS 151
                   G R   P CG   ++   A     VVG+EIS+I I++          EE  +
Sbjct: 61  DTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLA 120

Query: 152 SLPNAKF-------VSFLKADFFTWCPTEL--FDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
            +  AK        +S      F      +  FD I+D     AI P     +A  I   
Sbjct: 121 EIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSL 180

Query: 203 LKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
           L+ + +  +  L +  + H  GPP+ V  +E
Sbjct: 181 LRKEFQYLVAVLSYDPTKH-AGPPFYVPSAE 210

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 98.7 bits (245), Expect = 1e-25
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 17/159 (10%)

Query: 89  WDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAE 147
               +    +  +      +P  R LVP CG   D+  ++    +VVG E+S+ A+++  
Sbjct: 2   SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYF 61

Query: 148 ELSSSLP-----------NAKFVSFLKADFFTWCPTEL--FDLIFDYTFFCAIEPEMRAA 194
                 P            A  +     DFF     ++      +D     A+  +MR  
Sbjct: 62  TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRER 121

Query: 195 WAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSE 231
           + Q ++  +       LITL +  +    GPP+ V  + 
Sbjct: 122 YVQHLEALMPQACSGLLITLEYDQALL-EGPPFSVPQTW 159

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 87.5 bits (217), Expect = 1e-21
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 81  CWEEGL--TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEI 138
             +E      +++ +    ++   +   +  G+ L  GCG G + + +A+    V   + 
Sbjct: 5   IRDENYFTDKYELTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDK 62

Query: 139 SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQK 198
           + ++I   E + S   N   +     D         +D I        +E +        
Sbjct: 63  NAMSIANVERIKSI-ENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIAN 121

Query: 199 IKDFLKPDGELITLMFPISDHVGGPP 224
           ++   KP G  + +    +       
Sbjct: 122 MQRCTKPGGYNLIVAAMDTADYPCTV 147

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 83.8 bits (207), Expect = 4e-20
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 8/138 (5%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLE 137
           W++ + +    +   +P   +V    +  +P+G+ L    G G +   +AS    V  ++
Sbjct: 2   WDERFSQSEYVYG-TEPNDFLVS--VANQIPQGKILCLAEGEGRNACFLASLGYEVTAVD 58

Query: 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWA 196
            S + + KA++L+        ++ ++++   +    + ++ I     FC +   +R    
Sbjct: 59  QSSVGLAKAKQLAQEKGVK--ITTVQSNLADFDIVADAWEGIVS--IFCHLPSSLRQQLY 114

Query: 197 QKIKDFLKPDGELITLMF 214
            K+   LKP G  I   F
Sbjct: 115 PKVYQGLKPGGVFILEGF 132

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 78.1 bits (192), Expect = 2e-17
 Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 8/164 (4%)

Query: 67  QQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVH------LHQSGALPKGRALVPGCGTG 120
           Q    +E+     +C        +                +  +  +   + L  GCG G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 121 YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD 180
            + + ++     V   + ++ +I    E          +S    D       E +D I  
Sbjct: 133 RNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQENYDFIVS 190

Query: 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
              F  +  E   +  + +K+     G  + +    +D V  P 
Sbjct: 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPL 234

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 67.4 bits (164), Expect = 6e-14
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 20/150 (13%)

Query: 78  WEKCW--EEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVV 134
           W++ +       P+D          L +    P+ R LV GCG       +       V 
Sbjct: 10  WDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVT 69

Query: 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRA 193
            ++ S + +   +   + +P    + +   D      P+  FD++ +     A+    R 
Sbjct: 70  SVDYSSVVVAAMQACYAHVPQ---LRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERD 126

Query: 194 AWA-------------QKIKDFLKPDGELI 210
            W               ++   L P G  I
Sbjct: 127 PWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 63.5 bits (154), Expect = 2e-12
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 20/176 (11%)

Query: 71  HIESSGGWEKCWEE-----GLTPWDIGQPAPIIVHLHQSGAL--PKGRALVPGCGTGYDV 123
            I  +  WE+ W +         WD      ++V L +   L  P+   +   CG G   
Sbjct: 12  DINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQT 71

Query: 124 VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFTWCPTELFDL-IFD 180
             ++     V+GL++S  A++ A + +++  N  +  +  L  +      +E+ D  I+ 
Sbjct: 72  KFLSQFFPRVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDANIYM 130

Query: 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---------PISDHVGGPPYKV 227
            T F  I  E R    Q ++  L   G +  +            + +  G  PY++
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYEL 186

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
               +G  L    GTGY    ++     V  L+ S   I +A      L N   V F + 
Sbjct: 43  AGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDN---VEFRQQ 97

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D F W P   +D +F   +   +  +   A+ + ++  + P G +        D      
Sbjct: 98  DLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE-----FVDVTDHER 152

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 7/103 (6%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
              + L  GCG GY   AM +    V   + S     +A                   F 
Sbjct: 43  AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFH 95

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                + +D ++ +     +  +  A   + I   LKP G   
Sbjct: 96  QLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLK 163
             G  L    G G            V  LE+S        K+  E  +        + ++
Sbjct: 82  VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQ 139

Query: 164 ADFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            D   +   + F  +         ++   R      +++ L+P G+ +
Sbjct: 140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 82  WEEGLTPWD-IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISD 140
           W     P++       + + L    +      L  GC  G     +A   + +  +++  
Sbjct: 27  WRLDDNPFERERHTQLLRLSL---SSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMP 83

Query: 141 IAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE----PEMRAAWA 196
            AI +A + +    +   +S+   D   +   ELFDLI        +             
Sbjct: 84  RAIGRACQRTKRWSH---ISWAATDILQFSTAELFDLI---VVAEVLYYLEDMTQMRTAI 137

Query: 197 QKIKDFLKPDGELI 210
             +   L P G L+
Sbjct: 138 DNMVKMLAPGGHLV 151

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
                  L  G GTG     +    PE     +++S+  ++ A+           V +++
Sbjct: 42  DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKYIE 98

Query: 164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214
           AD+  +   E +D++        +E E +    ++    LK  G  I    
Sbjct: 99  ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
               G  L  G GTG     +AS    + GLE +   ++ A +     P+   V+F    
Sbjct: 39  TGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---HPS---VTFHHGT 92

Query: 166 FFTW-CPTELFDLIFD-YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214
                   + +  +   Y+       E+  A    ++  ++  G L+   F
Sbjct: 93  ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV-ALRMAVEDGGGLLMSFF 142

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSS 152
           +     +       R L   CGTG   + +A     VVGL++      +A +KA+E +  
Sbjct: 30  VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 + FL+ D         FD +   ++     + E       K+ + LKP G  I
Sbjct: 90  ------IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 12/119 (10%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSL 153
           I+       L     L   CGTG     +    +    +++S      A  K        
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK- 85

Query: 154 PNAKFVSFLKADFFTWCPTELFDLI--FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                      D         FDLI     +    I+ +    + + + + LK  G  I
Sbjct: 86  -----PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 8/125 (6%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAE 147
             D  + A  +  L +  +      L   CGTG  +  +A     V GLE+S   +  A 
Sbjct: 30  GKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIAR 89

Query: 148 ELSSSLPNAKFVSFLKADFFTWCPTELFDLIF--DYTFFCAIEPEMRAAWAQKIKDFLKP 205
                            D   +     F  +     +           A  ++    + P
Sbjct: 90  R------RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP 143

Query: 206 DGELI 210
           DG ++
Sbjct: 144 DGVVV 148

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
           P        CG   +++A+     P   +VG++    A+  A  L++    A  ++  + 
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177

Query: 165 DFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           D +     E +DL+  +       +        ++    LKP G L+T
Sbjct: 178 DAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSL 153
           I  L +S        L   CGTG  +           GLE+S      A K+  +     
Sbjct: 30  IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPD----- 84

Query: 154 PNAKFVSFLKADFFTWCPTELFDLIF--DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 +  + D   +     F  +     +       E   A      + L+P G ++
Sbjct: 85  -----ATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 12/143 (8%)

Query: 92  GQPAPIIVHL--HQSGALPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEE 148
               P +     + + +      L  G G     +++   + Y   G+EISD+ +KKAE 
Sbjct: 5   IIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN 64

Query: 149 LSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
            S    N   ++  K D     F     E    ++ Y     +          +IK  LK
Sbjct: 65  FSRE--NNFKLNISKGDIRKLPF---KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119

Query: 205 PDGELITLMFPISDHVGGPPYKV 227
           P G          D       K+
Sbjct: 120 PGGLACINFLTTKDERYNKGEKI 142

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTE 173
             G G D   +A   + V   ++ + A+ K  +      + N + +     +   +    
Sbjct: 30  TMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREP 89

Query: 174 LFDLIFDYTFFCAIEPEMRAAWA------QKIKDFLKPDGELITLMFPISDHVGGP 223
           +   IF+  +  + +  +           +KI D L+  G L  +++    H GG 
Sbjct: 90  IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY--GHDGGD 143

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERY-VVGLEIS----DIAIKKAEELSSSLPNAKFVSFL 162
           P  R    GCGTG   + +A  + Y V G+++S    +IA +KA E +        V F 
Sbjct: 33  PGKRIADIGCGTGTATLLLA--DHYEVTGVDLSEEMLEIAQEKAMETNRH------VDFW 84

Query: 163 KADFFTWCPTELFDLI--FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
             D       E  D I     +                    L   G+L+
Sbjct: 85  VQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 53.4 bits (128), Expect = 5e-09
 Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
                +   CG G D   +AS       V G +I D AI    +  + L     V+ +K 
Sbjct: 22  EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81

Query: 165 DF--FTWCPTELFDLI-FDYTFFCAIE------PEMRAAWAQKIKDFLKPDGELITLMFP 215
                          + F+  +  + +      PE       K  + L   G +  +++ 
Sbjct: 82  GHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141

Query: 216 ISDHVGGPPYKVSVSE 231
                 G   K  V E
Sbjct: 142 --GGDTGFEEKEKVLE 155

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 53.1 bits (127), Expect = 8e-09
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 11/105 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
           P+ R L  GCG G D              + S   +K A     + P+A    +      
Sbjct: 48  PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARA---NAPHADVYEWNGKGEL 104

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                  F LI       ++   +             PD   + +
Sbjct: 105 PAGLGAPFGLIVSRRGPTSVILRLPEL--------AAPDAHFLYV 141

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 53.6 bits (128), Expect = 1e-08
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 116 GCGTGYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT 172
           GCG G D++    +      G++I++++I  A   + ++     V F   D +       
Sbjct: 72  GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 131

Query: 173 ELFDLIFD-YTFFCAIEPEMRA-AWAQKIKDFLKPDGELITLMF 214
           + FD+I   ++F  A           + I   L+P G  I  + 
Sbjct: 132 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
             G  L  G GTG     +    R V G+E S      A+E    LP     S  + DF 
Sbjct: 45  SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKE---KLPKE--FSITEGDFL 99

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           ++      D I     F  +  + +     K    L   G+++      +D +    
Sbjct: 100 SFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIV-----FADTIFADQ 151

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKF 158
            +         RAL  G G G     + +        LE     +++A+   + +P  KF
Sbjct: 85  FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKF 144

Query: 159 VSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           +    A   T   P   +DLI        +       + +  +  L P+G + 
Sbjct: 145 I---LASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF- 166
            +G+ L   CG G     +      VVG++IS+  I+KA E + S  +   V F+  D  
Sbjct: 38  KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDAR 95

Query: 167 ---FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              F     + FD +         EP       ++++  LKP G+ I
Sbjct: 96  KLSF---EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 48.2 bits (114), Expect = 4e-07
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 6/140 (4%)

Query: 95  APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSS 151
           A ++  L +       R L  G  +G     M+    P   + G+E +   ++    +  
Sbjct: 64  AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              N   +  +  D              D  +    +PE  A   +  + FL+  G ++ 
Sbjct: 124 DRRN---IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLM 180

Query: 212 LMFPISDHVGGPPYKVSVSE 231
            +   S  V   P +V   E
Sbjct: 181 AIKARSIDVTTEPSEVYKRE 200

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
              G  L  G   G     +      +  +E S+ AI  A+           ++++ + F
Sbjct: 41  FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGR-----LKDGITYIHSRF 95

Query: 167 FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210
                   +D I        +E   +  A   +   D+L   G L 
Sbjct: 96  EDAQLPRRYDNI---VLTHVLEHIDDPVALLKRINDDWLAEGGRLF 138

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF 158
           L Q            GCG G     +        + G++  D  ++KA +    LPN   
Sbjct: 26  LAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---LPN--- 79

Query: 159 VSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214
            +F KAD  TW P +  DL++    F  + P+  A  +Q + D L+  G L   M 
Sbjct: 80  TNFGKADLATWKPAQKADLLYANAVFQWV-PDHLAVLSQ-LMDQLESGGVLAVQMP 133

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 81  CWEEGLTPWDIGQPAPIIVH-----LHQSGALPKG-RALVPGCGTGYDVVAMASPERY-- 132
            ++E +   +I + +          L  +G L +  + L  G G G     +    ++  
Sbjct: 49  LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLV--RKFGV 106

Query: 133 -VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIE-- 188
            +  L I+ +  K+ EE ++    A  ++     F    C    +D I+      A    
Sbjct: 107 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW---SQDAFLHS 163

Query: 189 PEMRAAWAQKIKDFLKPDGELI 210
           P+    + +     LKP G + 
Sbjct: 164 PDKLKVFQE-CARVLKPRGVMA 184

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 108 PKGRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLK 163
            +G  +  GCG G     +   +P+  VV ++ S +A+  +     ++         F+ 
Sbjct: 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 281

Query: 164 ADFFTWCPTELFDLIFDYTFFC--------AIEPEMRAAWAQKIKDFLKPDGEL 209
            +  +      F+ +      C        A+   +        +  LK +GEL
Sbjct: 282 NNALSGVEPFRFNAV-----LCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 330

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175
           GCG G+    +      +  ++I+ IA+K+ +E          V  L +D     P E+ 
Sbjct: 25  GCGNGFYCKYLLEFATKLYCIDINVIALKEVKE------KFDSVITL-SD-----PKEIP 72

Query: 176 DLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSE 231
           D   D+  F     + + +     ++K  LK DG +I + +   +   GPP  + + E
Sbjct: 73  DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDE 130

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
              R L  GCG G  +          +G++I++  IK  E         KF + +K+D  
Sbjct: 41  GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG--------KF-NVVKSDAI 91

Query: 168 TW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            +    P +  D +    F   ++PE            +K    ++
Sbjct: 92  EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
                  AL  G G G     +  P  R V  ++I++  + +A+         +  ++  
Sbjct: 76  NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-EGKRVRNYFC 134

Query: 164 ADFFTWCPTE-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                + P    +D+I+       +  +  A + ++ K  L+P+G ++
Sbjct: 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 182

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 96  PIIVHLHQSGALPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSS 151
             I  L +            GC  G   ++       P   ++G++ S   +++  +  +
Sbjct: 46  TAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA 105

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           +  +   V  L  D           ++        + PE R A   KI + L P+G L+ 
Sbjct: 106 AYHSEIPVEILCNDIRHVEIKN-ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 164

Query: 212 LMFPISDH 219
                 + 
Sbjct: 165 SEKFRFED 172

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
              LP+GR +  G GTG      A P +  +G+E S+   + A +        + V  LK
Sbjct: 43  KCLLPEGRGVEIGVGTGR----FAVPLKIKIGVEPSERMAEIARK--------RGVFVLK 90

Query: 164 ADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFP 215
                        E FD          I    +   A   +    LK  G LI  +  
Sbjct: 91  GTAENLPL---KDESFDFA---LMVTTICFVDDPERALK-EAYRILKKGGYLIVGIVD 141

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 5/140 (3%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSS 151
            A II  L         + L  G   G     +A    +  V  +E +   +++  +  +
Sbjct: 60  AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA 119

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              N   +  +  D              D  +    +P       +  K FLK  G  + 
Sbjct: 120 EREN---IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176

Query: 212 LMFPISDHVGGPPYKVSVSE 231
            +   S  V   P ++   +
Sbjct: 177 AIKARSIDVTKDPKEIFKEQ 196

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 116 GCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170
            CGTG D + +      V  ++ S      A+K+           K+V   +A++ T   
Sbjct: 65  ACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV-IEEANWLTLDK 123

Query: 171 ---PTELFDLI------FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                + FD +      F +      +        + I   ++P G L+
Sbjct: 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 73  ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERY 132
           E    +E  +  G      G        L         + L  G G G   + +   E+Y
Sbjct: 22  EGVKVYEFIF--GENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYIN--EKY 77

Query: 133 ---VVGLEISDIAIKKAEELSSSLPNAKFV--SFLKADFFTWCPTELFDLIFDYTFFCAI 187
                G++I    +  A E  S      F     L  +F    P   FDLI+      A+
Sbjct: 78  GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF----PENNFDLIYSRDAILAL 133

Query: 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS 228
             E +    QK   +LKP G L+     I+D+         
Sbjct: 134 SLENKNKLFQKCYKWLKPTGTLL-----ITDYCATEKENWD 169

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
           L      P    L  GCGTG     +A     V+G + +   I+KA +   + P+   + 
Sbjct: 50  LQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQ---NYPH---LH 103

Query: 161 FLKADFFTWCPTELFDLIF-DYTF-FCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214
           F  AD   +   +  D +F +    +     E  AA A  I   LK  G  +    
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWV---KEPEAAIAS-IHQALKSGGRFVAEFG 155

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 94  PAPIIVHLHQ--SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151
           P  I  H+    S +      +   CG G + +  A     V+ ++I  + I  A   + 
Sbjct: 62  PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAE 121

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG-ELI 210
               A  + F+  DF         D++F    +    P+   A    I+  + PDG E+ 
Sbjct: 122 VYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG--PDYATAETFDIRTMMSPDGFEIF 179

Query: 211 TLMFPISDHVG 221
            L   I++++ 
Sbjct: 180 RLSKKITNNIV 190

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 26/144 (18%)

Query: 81  CWEEGLTPWDIGQPAPIIVH--LHQSGALPKGRALVPGCGTGYDVVAMASPERY---VVG 135
            WE+      +      +    +         R L  GCG G   V +A        V G
Sbjct: 32  YWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLA--TARDVRVTG 89

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIE--- 188
           + IS   + +A   +++   A  V+F  AD     F       FD ++      A+E   
Sbjct: 90  ISISRPQVNQANARATAAGLANRVTFSYADAMDLPF---EDASFDAVW------ALESLH 140

Query: 189 --PEMRAAWAQKIKDFLKPDGELI 210
             P+ R    +++   L+P G + 
Sbjct: 141 HMPD-RGRALREMARVLRPGGTVA 163

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 16/119 (13%)

Query: 100 HLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPN 155
            +     L    +    GCGTG   + +A  +     + G+++    I+   E +     
Sbjct: 37  AVSFINELTDDAKIADIGCGTGGQTLFLA--DYVKGQITGIDLFPDFIEIFNENAVKANC 94

Query: 156 AKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           A  V  +        F     E  DLI+       I  E       +   +LK  G + 
Sbjct: 95  ADRVKGITGSMDNLPF---QNEELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIA 147

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 84  EGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEIS 139
             +     G P   +  L     L +       GCGTG   + +A        V GL+  
Sbjct: 21  SNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLA--GHVTGQVTGLDFL 78

Query: 140 DIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
              I      +        V+ +        F     E  DLI+       I  E R   
Sbjct: 79  SGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF---RNEELDLIWSEGAIYNIGFE-RG-- 132

Query: 196 AQKIKDFLKPDGELI 210
             + + +LK  G L 
Sbjct: 133 LNEWRKYLKKGGYLA 147

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 21/136 (15%)

Query: 100 HLHQSGALPKG-RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS--LP 154
            LH     P G + L  GCG G   V +A   P+  +  ++IS  +++KA E +    + 
Sbjct: 28  LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK 87

Query: 155 NAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGE 208
           N   V FL+A+     F       FD I        +E       A    +K  LKP G 
Sbjct: 88  N---VKFLQANIFSLPF---EDSSFDHI---FVCFVLEHLQSPEEALKS-LKKVLKPGGT 137

Query: 209 LITLMFPISDHVGGPP 224
           +  +          P 
Sbjct: 138 ITVIEGDHGSCYFHPE 153

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 105 GALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
               +   L  GCG G+  +  A    + V+G+++S+  + +A+  ++S      V + +
Sbjct: 41  PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV----VCYEQ 96

Query: 164 ADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                     + ++++   +              +K+   LK  G  I
Sbjct: 97  KAIEDIAIEPDAYNVVL--SSLALHYIASFDDICKKVYINLKSSGSFI 142

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 18/118 (15%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP 154
           I+  L +         L  GCG GY   A A   PE    GL++S +AIK A   +   P
Sbjct: 74  IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA---AKRYP 130

Query: 155 NAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              F     A            D I      C  E E+           +KP G +IT
Sbjct: 131 QVTFCV---ASSHRLPFSDTSMDAIIRIYAPCKAE-ELARV--------VKPGGWVIT 176

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIK 144
             D      II+     G  P    L  G G+G     +      +  +  +E  +  +K
Sbjct: 96  EIDASY---IIMRC---GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK 149

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
           KA +  S   +   V   ++D   +   +++D +          P+      + I   +K
Sbjct: 150 KAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI------PDPWNHVQK-IASMMK 202

Query: 205 PDGELITL 212
           P       
Sbjct: 203 PGSVATFY 210

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 26/179 (14%)

Query: 50  EVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWE--------EGLTPWDIGQPAP----- 96
           + E+   I     +N    L+  +         E        E  +PW+  +        
Sbjct: 49  DFESAKHILDDAEMNHALSLI-RKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRY 107

Query: 97  --IIVHLHQSGALPKG-RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSS 151
             ++ +    G   +G RA+  G G       + S      V  +EI     + + ++  
Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            L     V+ +  D       E FD++       A   E +    + I  ++  +  +I
Sbjct: 168 GLGVDG-VNVITGDETVIDGLE-FDVLMV-----AALAEPKRRVFRNIHRYVDTETRII 219

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNA 156
           ++    + K    +  GCG GY  + +           G++  +  + +A EL   LP  
Sbjct: 14  VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
               FL+ D       + +D+   + F   +         QK+   +K  G++I  
Sbjct: 74  --SEFLEGDATEIELNDKYDIAICHAFLLHM-TTPETM-LQKMIHSVKKGGKIICF 125

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELS 150
              I+  L  +      + L  G  +G  +  ++          G+E S   +++   ++
Sbjct: 62  AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVA 121

Query: 151 SSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              PN   +  L AD       +      D  +    +P+         K FLK +G+++
Sbjct: 122 QRRPN---IFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDML 178

Query: 211 TLMFPISDHVGGPPYKVSVSE 231
            ++   S  V   P ++  +E
Sbjct: 179 LVIKARSIDVTKDPKEIYKTE 199

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKF 158
           ++     +  G  +  G G G   +A+A   +  +  L+ S    + A +  +       
Sbjct: 35  NIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94

Query: 159 VSFLKADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITL 212
           +  ++ D              DLI       ++    ++  A+ + I   LK  G+    
Sbjct: 95  IQIVQGDVHNIPI---EDNYADLI---VSRGSVFFWEDVATAFRE-IYRILKSGGKTY-- 145

Query: 213 MFPISDHVGGPPYKVSVSE 231
              I    G    + S+S 
Sbjct: 146 ---IGGGFGNKELRDSISA 161

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 27/141 (19%)

Query: 100 HLHQSGALPKGRALVP----------GCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE 148
            L  +   P  RA++P          GCG G+           YV+GL++S+  + +A  
Sbjct: 25  GLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARA 84

Query: 149 LSSSLPNAKFVSFLKADF----FTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFL 203
                     +++ +AD         P + FDL +         +        + +   L
Sbjct: 85  AGPDTG----ITYERADLDKLHL---PQDSFDLAYSSLALHYVEDVA---RLFRTVHQAL 134

Query: 204 KPDGELI-TLMFPISDHVGGP 223
            P G  + +   PI      P
Sbjct: 135 SPGGHFVFSTEHPIYMAPARP 155

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 75  SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVV 134
           +   ++ W+ G            I+   +     +   L  GCG GY    ++      V
Sbjct: 28  NQNSQEMWDSGSRST--------IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAV 79

Query: 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPE 190
           G++IS++ I+K +E          +SF+K D     F     E F+ I           E
Sbjct: 80  GVDISEVMIQKGKERGEGPD----LSFIKGDLSSLPF---ENEQFEAIMAINSLEWT-EE 131

Query: 191 MRAAWAQKIKDFLKPDGELI 210
              A  + IK  LK DG   
Sbjct: 132 PLRALNE-IKRVLKSDGYAC 150

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 116 GCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT 172
           G G+G  +   A    +     G+++S +   +A+  +  L  ++ V F+  D   +   
Sbjct: 44  GSGSGEMLCTWA--RDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101

Query: 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
           E  D+               A   + +   LKP G
Sbjct: 102 EKCDVAACVGATWIAGG--FAGAEELLAQSLKPGG 134

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 106 ALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV--SFL 162
             P+G + L  GCG G     ++     V+G ++  I I  A++     P A++V     
Sbjct: 43  MAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQ---DFPEARWVVGDLS 99

Query: 163 KADFFTWCPTELFDLIFD-YTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                       FDLI         +  + R      I   L  DG  +
Sbjct: 100 VDQI----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 23/128 (17%)

Query: 116 GCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLKAD----- 165
           G G G+ +  ++     +  V  +++ +  +  A E      L N   V  LK++     
Sbjct: 45  GTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN---VEVLKSEENKIP 101

Query: 166 FFTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
                P    D I             E      + +K   KP   L  + +   +   GP
Sbjct: 102 L----PDNTVDFI---FMAFTFHELSEPLKFLEE-LKRVAKPFAYLAIIDWKKEERDKGP 153

Query: 224 PYKVSVSE 231
           P +   SE
Sbjct: 154 PPEEVYSE 161

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 24/114 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADF 166
                L  GCG G   +A+A   +     +I+  AIK A+E +  +  +   +  + +D 
Sbjct: 52  KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 167 FTWCPTELFDLI-----------FDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
           +       ++ I             +                  K+ LK +GE+
Sbjct: 112 YENVKDRKYNKIITNPPIRAGKEVLHRII-------EEG-----KELLKDNGEI 153

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 41.7 bits (99), Expect = 8e-05
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF-----VSFLKADFFT 168
           G GTG   +A+AS  P+  ++ ++    A+  A+       NA+      +  L++D+F+
Sbjct: 117 GTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR------NAQHLAIKNIHILQSDWFS 170

Query: 169 WCPTELFDLI 178
               + F +I
Sbjct: 171 ALAGQQFAMI 180

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 42.0 bits (98), Expect = 8e-05
 Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKA-------EELS 150
           L   G+L     L  GCGTG DV   +        V+G+++ D  ++ A        E  
Sbjct: 76  LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135

Query: 151 SSLPNAKFVSFLKADFFTWC-------PTELFDLIFDYTFFCAIE--PEMRAAWAQKIKD 201
              P+   V FLK              P    D++      C         A + + I  
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIV---ISNCVCNLSTNKLALFKE-IHR 191

Query: 202 FLKPDGEL 209
            L+  GEL
Sbjct: 192 VLRDGGEL 199

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175
           GC +G    A+      V G+E    A ++A+E    L +         D       E F
Sbjct: 40  GCSSGALGAAIKENGTRVSGIEAFPEAAEQAKE---KLDHVVLGDIETMDMPY--EEEQF 94

Query: 176 DLIFDYTFFCAIE----PEMRAAWAQKIKDFLKPDGELI 210
           D +    F   +E    P    A  +K+K ++K +G ++
Sbjct: 95  DCV---IFGDVLEHLFDPW---AVIEKVKPYIKQNGVIL 127

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 10/124 (8%)

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEEL 149
            P    + +  +G  P    +  G G+G   + +A+   PE  VV  EI +   K A E 
Sbjct: 78  HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137

Query: 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
                    V+    D +     E  D +          P+            LKP G  
Sbjct: 138 IKWAGFDDRVTIKLKDIYEGIEEENVDHVI------LDLPQPERVVEH-AAKALKPGGFF 190

Query: 210 ITLM 213
           +   
Sbjct: 191 VAYT 194

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLE 137
           W      G            I+           R L  GCG G+ + A+A      VG++
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAI--LGRQPERVLDLGCGEGWLLRALADRGIEAVGVD 81

Query: 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQ 197
                +  A    +   +    S+ +         + +DLI       A+  +       
Sbjct: 82  GDRTLVDAARAAGAGEVHL--ASYAQLAEAKVPVGKDYDLIC---ANFALLHQDIIELLS 136

Query: 198 KIKDFLKPDGELI 210
            ++  L P G L+
Sbjct: 137 AMRTLLVPGGALV 149

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)

Query: 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD- 165
            KG+ +    G G   + +++  +  +VG+EI +     A+   +       +  ++ D 
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108

Query: 166 --FFTWCPTELFDLI------FDYTFFCAIEPEMRAA------------WAQKIKDFLKP 205
                  P E  D++      F                             +     LK 
Sbjct: 109 KKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ 168

Query: 206 DGELITLMFP 215
            G+    +  
Sbjct: 169 GGKA-NFVHR 177

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 13/107 (12%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 93  QPAP---IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL 149
           +P      ++   +   L     L  G  TG  +         VV  +++  A++     
Sbjct: 5   EPGEDTYTLMDALEREGLEMKIVLDLGTSTGV-ITEQLRKRNTVVSTDLNIRALE----- 58

Query: 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWA 196
                + +  + ++AD       E  D++     +     +      
Sbjct: 59  -----SHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD--PIIG 98

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELS 150
           P+     + +     +   +  GCG G   + MA    P   ++G ++S   IK AE + 
Sbjct: 22  PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81

Query: 151 SSLPNA-KFVSFLKADF-------FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
              P+  K VSF  +               +  D+I         + E    + +     
Sbjct: 82  EGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE---KFQRSAYAN 138

Query: 203 LKPDGELI 210
           L+ DG + 
Sbjct: 139 LRKDGTIA 146

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEIS----DIAIKKAEELS 150
           ++  L QS A    R +  GCG G  +  +   S    + G+++S    +IA ++ + L 
Sbjct: 21  VVAALKQSNA---RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR 77

Query: 151 SSLPNAKFVSFLKADF-FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
                 + +  ++    +       +D          ++     A+ + + +F +P   +
Sbjct: 78  LPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137

Query: 210 IT 211
           +T
Sbjct: 138 VT 139

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS 150
           I  P        +     + R L  G G+G  +  ++     V   E  +   K A++  
Sbjct: 74  IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL 133

Query: 151 SSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 K V F   DF      E     F   F    EP     + +K+   L     + 
Sbjct: 134 KKFNLGKNVKFFNVDFKDAEVPEGI---FHAAFVDVREPW---HYLEKVHKSLMEGAPVG 187

Query: 211 TLM 213
            L+
Sbjct: 188 FLL 190

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 38.8 bits (90), Expect = 9e-04
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 16/114 (14%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLK 163
             +   + L  G G G   + +A     VVG+E    ++   ++ L ++   A+      
Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQA--LHS 287

Query: 164 ADFFTWCPTELFDLIFDYTFFC--------AIEPEMRAAWAQKIKDFLKPDGEL 209
                      FD+I               A+  ++  A+       L+P G  
Sbjct: 288 DVDEALTEEARFDII-----VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVF 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.93
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.92
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.91
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.83
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.82
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.82
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.82
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.81
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.81
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.81
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.8
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.8
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.8
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.8
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.79
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.79
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.79
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.79
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.79
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.78
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.78
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.78
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.78
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.78
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.78
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.77
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.77
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.77
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.77
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.76
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.76
3ocj_A	305	Putative exported protein; structural genomics, PS	99.76
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.76
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.76
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.76
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.76
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.76
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.75
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.75
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.75
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.74
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.74
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.74
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.73
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.73
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.73
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.73
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.73
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.72
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.72
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.72
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.72
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.72
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.72
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.72
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.72
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.72
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.72
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.72
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.71
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.71
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.71
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.71
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.71
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.71
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.7
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.7
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.7
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.7
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.69
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.69
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.69
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.69
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.69
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.69
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.69
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.69
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.69
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.68
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.68
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.68
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.68
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.68
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.68
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.68
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.67
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.67
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.67
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.67
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.67
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.67
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.67
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.66
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.66
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.66
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.65
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.65
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.65
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.65
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.65
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.65
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.64
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.64
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.64
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.64
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.64
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.64
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.64
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.64
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.63
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.63
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.63
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.63
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.63
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.63
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.62
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.62
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.62
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.62
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.62
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.62
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.62
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.62
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.61
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.61
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.61
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.61
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.61
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.61
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.61
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.6
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.6
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.6
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.6
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.59
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.59
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.59
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.59
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.59
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.58
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.58
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.58
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.58
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.57
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.57
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.57
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.57
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.57
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.57
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.56
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.56
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.56
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.55
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.55
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.55
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.55
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.55
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.55
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.54
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.54
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.54
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.54
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.54
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.54
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.54
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.54
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.53
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.53
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.53
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.52
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.52
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.51
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.51
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.5
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.49
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.49
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.49
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.49
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.49
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.49
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.49
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.49
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.48
2o07_A	304	Spermidine synthase; structural genomics, structur	99.48
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.48
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.48
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.48
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.48
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.48
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.48
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.47
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.47
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.47
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.47
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.46
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.46
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.46
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.46
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.45
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.45
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.45
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.44
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.44
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.44
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.44
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.43
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.43
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.43
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.42
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.41
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.4
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.38
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.37
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.37
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.35
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.32
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.32
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.32
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.31
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.3
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.3
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.3
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.3
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.3
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.29
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.28
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.28
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.28
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.26
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.25
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.22
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.2
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.2
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.18
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.17
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.14
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.13
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.13
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.11
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.1
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.09
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.07
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.06
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.02
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.01
3khk_A	544	Type I restriction-modification system methylation	99.01
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.98
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.93
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.91
3lkd_A	542	Type I restriction-modification system methyltrans	98.89
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.88
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.88
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.88
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.87
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.83
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.73
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.69
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.66
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.64
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.62
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.6
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.57
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.55
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.5
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.42
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.42
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.32
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.29
3ufb_A	530	Type I restriction-modification system methyltran	98.26
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.23
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.17
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.12
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.1
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.99
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.9
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.75
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.72
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.71
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.47
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.35
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.29
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.25
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.23
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.13
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.85
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.78
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.66
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.63
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.59
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.56
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.55
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.49
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.46
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.45
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.36
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.31
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.27
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.24
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.23
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.22
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.21
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.18
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.09
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.02
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.94
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.88
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.86
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.79
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.78
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	95.75
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.69
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.69
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.65
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.63
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.57
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.54
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.52
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.52
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.45
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.41
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	95.38
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.32
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.32
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.29
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.18
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.15
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.15
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.13
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.12
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.08
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.08
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.05
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.03
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.02
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.01
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.98
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.97
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.95
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.94
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.9
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.89
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.89
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.87
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.87
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.87
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.85
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.8
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.77
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	94.74
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.74
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.72
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.66
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.61
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.56
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.53
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.52
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.51
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.5
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.5
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.4
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.38
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.37
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.35
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.35
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.35
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.34
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.31
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.25
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.24
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.15
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.13
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.11
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.07
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.01
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.97
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	93.96
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.85
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.83
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	93.83
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.77
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.76
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.73
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.72
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.72
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	93.71
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	93.62
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.62
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.57
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.55
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.53
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.5
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.5
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.47
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.47
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.26
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.19
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.02
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.96
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.87
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.76
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.73
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.68
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	92.64
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.59
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.59
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.56
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	92.48
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	92.47
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.36
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.33
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	92.29
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.15
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.12
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	92.04
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	92.02
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	91.98
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	91.97
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	91.94
1spx_A	278	Short-chain reductase family member (5L265); paral	91.9
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.9
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	91.81
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	91.66
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	91.65
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	91.45
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	91.42
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.4
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.27
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.15
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	91.12
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	91.07
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	91.04
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.01
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.96
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.96
3imf_A	257	Short chain dehydrogenase; structural genomics, in	90.85
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	90.8
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.58
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.49
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.42
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	90.31
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	90.28
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	90.28
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.13
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.11
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	90.06
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	89.96
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.94
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	89.91
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	89.78
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	89.72
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	89.51
1lnq_A	336	MTHK channels, potassium channel related protein;	89.45
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.3
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.3
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	89.18
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.15
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	89.11
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.1
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	89.06
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	88.88
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	88.88
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.86
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	88.81
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	88.74
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	88.7
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.68
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	88.41
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.32
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.14
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.14
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	88.08

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.93  E-value=1.3e-25  Score=177.93  Aligned_cols=155  Identities=70%  Similarity=1.306  Sum_probs=139.7

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~  154 (231)
                      .++|++.|.....+|....+.+.+..++.....++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+
T Consensus        33 ~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~  112 (235)
T 3lcc_A           33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSP  112 (235)
T ss_dssp             HHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSG
T ss_pred             HHHHHHHHhcCCCCcccCCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccC
Confidence            56899999998888988888899999998777777899999999999999999999999999999999999999987654


Q ss_pred             CCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCCCCCC
Q 026903          155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (231)
Q Consensus       155 ~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~  229 (231)
                      ...+++|+.+|+.+..+..+||+|++..+++|+++++...+++++.++|+|||+|++..+.......++||..+.
T Consensus       113 ~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  187 (235)
T 3lcc_A          113 KAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDV  187 (235)
T ss_dssp             GGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCH
T ss_pred             CCcceEEEECchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCH
Confidence            456799999999997777799999999999999988889999999999999999999999998888889887653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.92  E-value=2.4e-25  Score=178.33  Aligned_cols=156  Identities=21%  Similarity=0.329  Sum_probs=127.0

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      .++|++.|.....+|....+++.+.+++...  ..++.+|||+|||+|..+..|++.|.+|+|+|+|+.+++.|+++...
T Consensus        33 ~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~  112 (252)
T 2gb4_A           33 LEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL  112 (252)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc
Confidence            4689999998888898888888888777643  23568999999999999999999999999999999999999876531


Q ss_pred             ----------C------CCCCceEEEEccCCCCCCC--CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          153 ----------L------PNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       153 ----------~------~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                                .      ....+++|+++|+.+....  ++||+|++..++++++++.+..+++++.++|||||++++.++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          113 SYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence                      0      0124799999999995432  789999999999999988889999999999999999875544


Q ss_pred             cCC-CCCCCCCCCCCCC
Q 026903          215 PIS-DHVGGPPYKVSVS  230 (231)
Q Consensus       215 ~~~-~~~~~~~~~~~~~  230 (231)
                      ... ....||||.++.+
T Consensus       193 ~~~~~~~~g~~~~~~~~  209 (252)
T 2gb4_A          193 SYDPTKHAGPPFYVPSA  209 (252)
T ss_dssp             ECCTTSCCCSSCCCCHH
T ss_pred             ecCCccCCCCCCCCCHH
Confidence            322 2356889876643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.91  E-value=4.1e-24  Score=165.88  Aligned_cols=142  Identities=20%  Similarity=0.322  Sum_probs=114.0

Q ss_pred             CCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC-----------C
Q 026903           88 PWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP-----------N  155 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~-----------~  155 (231)
                      +|+...+++.+.+++..... ++.+|||+|||+|..+..|++.|.+|+|+|+|+.+++.|+++.....           .
T Consensus         1 ~w~~~~~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~   80 (203)
T 1pjz_A            1 GSHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA   80 (203)
T ss_dssp             --CCSSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE
T ss_pred             CCCcccCCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCccccccccccccc
Confidence            58888999999998887544 56899999999999999999999999999999999999998764310           1


Q ss_pred             CCceEEEEccCCCCCCC--CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC-CCCCCCCCCCCCC
Q 026903          156 AKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPYKVSV  229 (231)
Q Consensus       156 ~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~-~~~~~~~~~~~~~  229 (231)
                      ..+++|+++|+.+....  ++||+|++..+++|++++.+.++++++.++|||||++++..+.. .....||||.++.
T Consensus        81 ~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~  157 (203)
T 1pjz_A           81 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQ  157 (203)
T ss_dssp             CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCH
T ss_pred             CCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCH
Confidence            24699999999996543  68999999999999998888899999999999999844433322 2234678887654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=2.3e-21  Score=155.92  Aligned_cols=118  Identities=18%  Similarity=0.178  Sum_probs=101.9

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      +..++.....++.+|||+|||+|..+..+++    ++.+|+|+|+|+.+++.|++++...+...+++|+++|+.+... +
T Consensus        60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~  138 (261)
T 4gek_A           60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-E  138 (261)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-C
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-c
Confidence            3444444456778999999999999999886    4669999999999999999998877766789999999998543 4


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .||+|++..+++|++++++.++|+++.++|||||+|++.+...
T Consensus       139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            6999999999999999999999999999999999999987654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.83  E-value=1.2e-19  Score=139.49  Aligned_cols=133  Identities=14%  Similarity=0.187  Sum_probs=108.0

Q ss_pred             cccchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           74 SSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      ...+|...|...       .....+.+.+.  ..++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....
T Consensus         7 ~~~~~~~~~~~~-------~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~   77 (199)
T 2xvm_A            7 DENYFTDKYELT-------RTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE   77 (199)
T ss_dssp             CTTHHHHHHTCC-------CCCHHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             chHHHhhhhccc-------cccHHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC
Confidence            346777777443       22445555554  345689999999999999999998889999999999999999987655


Q ss_pred             CCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          154 PNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       154 ~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +. .+++++.+|+.+....++||+|++..+++|+++++...+++++.++|+|||.+++.++..
T Consensus        78 ~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (199)
T 2xvm_A           78 NL-DNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD  139 (199)
T ss_dssp             TC-TTEEEEECCGGGCCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             CC-CCcEEEEcchhhCCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence            43 359999999988444678999999999999988788999999999999999988766544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.82  E-value=1.3e-19  Score=139.86  Aligned_cols=135  Identities=18%  Similarity=0.309  Sum_probs=110.4

Q ss_pred             chhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCC
Q 026903           77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA  156 (231)
Q Consensus        77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~  156 (231)
                      +|++.|......|. ..+...+..++.... ++ +|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+. 
T Consensus         1 ~W~~~y~~~~~~~~-~~~~~~l~~~~~~~~-~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-   76 (202)
T 2kw5_A            1 MWDERFSQSEYVYG-TEPNDFLVSVANQIP-QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-   76 (202)
T ss_dssp             CCCCCCCCCCCCCC-CCCCSSHHHHHHHSC-SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-
T ss_pred             Chhhhhcccchhhc-cCchHHHHHHHHhCC-CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-
Confidence            58888877665554 455666777776543 34 999999999999999999889999999999999999998765432 


Q ss_pred             CceEEEEccCCCC-CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          157 KFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       157 ~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                       ++.++.+|+.+. .+.++||+|++.  +.|++.++...+++++.++|+|||.+++.++....
T Consensus        77 -~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  136 (202)
T 2kw5_A           77 -KITTVQSNLADFDIVADAWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ  136 (202)
T ss_dssp             -CEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred             -ceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence             689999999884 456789999984  45667778899999999999999999999887654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.82  E-value=3.3e-19  Score=144.97  Aligned_cols=119  Identities=15%  Similarity=0.126  Sum_probs=102.1

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ...+.+.+..  .++.+|||+|||+|.++..+++.|.+|+|+|+++.+++.++++....+.  +++++.+|+.+....++
T Consensus       109 ~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~  184 (286)
T 3m70_A          109 HGDVVDAAKI--ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQEN  184 (286)
T ss_dssp             CHHHHHHHHH--SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSC
T ss_pred             HHHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCC
Confidence            4444455543  3678999999999999999999999999999999999999999877654  69999999998555789


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++..+++|++++....+++++.++|+|||++++..+...
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  227 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMST  227 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            9999999999999988889999999999999999777665443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.82  E-value=2.4e-19  Score=139.27  Aligned_cols=140  Identities=16%  Similarity=0.234  Sum_probs=112.0

Q ss_pred             cccchhhhhccCCC--CCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHh
Q 026903           74 SSGGWEKCWEEGLT--PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELS  150 (231)
Q Consensus        74 ~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~  150 (231)
                      ..++|+++|.....  ++........+..++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.
T Consensus         6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~   85 (215)
T 2pxx_A            6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACY   85 (215)
T ss_dssp             CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred             chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhc
Confidence            35789999987652  12222234456666665555678999999999999999998776 8999999999999999987


Q ss_pred             ccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccC-------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE-------------PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       151 ~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ...   ++++++.+|+.+ ..+.++||+|++..+++++.             .+....+++++.++|+|||++++.++..
T Consensus        86 ~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A           86 AHV---PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             TTC---TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccC---CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            642   479999999988 44567899999998887765             3566899999999999999999998765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.81  E-value=9.2e-20  Score=146.14  Aligned_cols=112  Identities=15%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCc
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~  174 (231)
                      ..+.+++......+.+|||+|||+|..+..|++.+.+|+|+|+|+.+++.|+++       ++++++++|+.+ ++++++
T Consensus        27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~s   99 (257)
T 4hg2_A           27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPAS   99 (257)
T ss_dssp             HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCc
Confidence            344444444344457999999999999999999999999999999999877532       469999999998 567789


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++..++||+++   .++++++.++|||||+|++..|...
T Consensus       100 fD~v~~~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          100 VDVAIAAQAMHWFDL---DRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             EEEEEECSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             ccEEEEeeehhHhhH---HHHHHHHHHHcCCCCEEEEEECCCC
Confidence            999999999999864   4689999999999999999887543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.81  E-value=2.3e-19  Score=139.98  Aligned_cols=105  Identities=20%  Similarity=0.280  Sum_probs=94.2

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   .+++++++|+.+..+.++||+|++..+++|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  127 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAELFDLIVVAEVLYYL  127 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCCEEEEEEESCGGGS
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCCccEEEEccHHHhC
Confidence            4579999999999999999998889999999999999999988664   3799999999997677899999999999999


Q ss_pred             Ch-HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          188 EP-EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       188 ~~-~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++ +...++++++.++|+|||.+++.+..
T Consensus       128 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          128 EDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            74 66678999999999999999987643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=4e-19  Score=137.25  Aligned_cols=114  Identities=17%  Similarity=0.142  Sum_probs=98.9

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~  173 (231)
                      ...+..++...   +.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++.      .+++++.+|+.+ ..+.+
T Consensus        31 ~~~l~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  101 (203)
T 3h2b_A           31 RVLIEPWATGV---DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPK  101 (203)
T ss_dssp             HHHHHHHHHHC---CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCC
T ss_pred             HHHHHHHhccC---CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCC
Confidence            44555555533   689999999999999999998889999999999999999874      358999999988 44567


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +||+|++..+++|+++++...+++++.++|+|||.+++..+...
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            99999999999999877888999999999999999999887654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.80  E-value=2.9e-19  Score=146.26  Aligned_cols=124  Identities=12%  Similarity=0.152  Sum_probs=104.3

Q ss_pred             CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCC--CceEEEEccCCCCCC
Q 026903           94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCP  171 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~~  171 (231)
                      .......++.....++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+..  .+++++++|+.+...
T Consensus        68 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             CHHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             ccHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            345566666655555579999999999999999999999999999999999999988765321  469999999999655


Q ss_pred             CCceeEEEeC-CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          172 TELFDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       172 ~~~fD~i~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .++||+|++. .+++++++++...+++++.++|+|||+|++..+.++
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            7899998865 667888888889999999999999999999887665

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.80  E-value=7.1e-19  Score=141.08  Aligned_cols=120  Identities=23%  Similarity=0.273  Sum_probs=103.3

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP  171 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~  171 (231)
                      ......++..... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....   ++++++.+|+.+ +.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~  117 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFP  117 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCC
Confidence            3445666665544 4579999999999999999985 789999999999999999987654   579999999998 455


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .++||+|++..+++|+++++...+++++.++|+|||.+++.++...
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  163 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT  163 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            7899999999999999888899999999999999999999887554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.80  E-value=2.4e-19  Score=141.21  Aligned_cols=136  Identities=24%  Similarity=0.288  Sum_probs=99.1

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~  154 (231)
                      ..+|+.+|......  .......+...    ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+
T Consensus         3 ~~yw~~~~~~~~~~--~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   76 (235)
T 3sm3_A            3 ESYWEKVSGKNIPS--SLDLYPIIHNY----LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPG   76 (235)
T ss_dssp             -----------------CCCCTTHHHH----CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCS
T ss_pred             hhHHHHHhhccCCC--HHHHHHHHHHh----CCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC
Confidence            45777777643221  11112222222    2356899999999999999999999999999999999999999887665


Q ss_pred             C----CCceEEEEccCCC-CCCCCceeEEEeCCcccccC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          155 N----AKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       155 ~----~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .    ..++.++.+|+.+ ..+.++||+|++..+++|++ ++....+++++.++|+|||++++.++..
T Consensus        77 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A           77 LNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             CCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             CccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            4    2368999999998 44567899999999999996 4556789999999999999999998765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.80  E-value=6.8e-19  Score=134.07  Aligned_cols=121  Identities=14%  Similarity=0.098  Sum_probs=95.0

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~  172 (231)
                      ......++.....++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+. +++++++.+....  ..+
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~   87 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVR   87 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhcc
Confidence            4445556665555678999999999999999999988999999999999999999876655 5799999777662  346


Q ss_pred             CceeEEEeCCccccc-------ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 ELFDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++||+|+++..+.+.       .++....+++++.++|||||++++..|+.
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            789999976332221       23566788999999999999999998864

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.79  E-value=3.2e-19  Score=141.56  Aligned_cols=103  Identities=18%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++...     +++++++|+.+..++++||+|++..+++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            4567999999999999999999888999999999999999998743     59999999988766789999999999999


Q ss_pred             cChHHHHHHHHHHH-hhcCCCcEEEEEEccC
Q 026903          187 IEPEMRAAWAQKIK-DFLKPDGELITLMFPI  216 (231)
Q Consensus       187 ~~~~~~~~~l~~~~-~~L~pgG~l~~~~~~~  216 (231)
                      +++.  ..+++++. ++|||||+|++.+...
T Consensus       116 ~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          116 IDDP--VALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             CSSH--HHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             hcCH--HHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            9643  68999999 9999999999987554

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.79  E-value=7.2e-19  Score=142.92  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=100.1

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~f  175 (231)
                      +..++.....++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....++.++++++.+|+.+.  .+.++|
T Consensus        58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f  137 (285)
T 4htf_A           58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV  137 (285)
T ss_dssp             HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred             HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence            445555555556899999999999999999999999999999999999999988777667899999999984  367899


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+|++..+++|+++  ...+++++.++|||||++++..+.
T Consensus       138 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          138 DLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             EEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeC
Confidence            99999999999954  367999999999999999998764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.79  E-value=1.3e-18  Score=137.27  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=96.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++.  +.+++++|+|+.+++.++++....+   +++++.+|+.+....++||+|++..++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l  119 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEEKYDMVVSALSI  119 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCCCceEEEEeCcc
Confidence            35589999999999999999984  7799999999999999999886653   799999999995555899999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|++++....+++++.++|+|||.+++.++...
T Consensus       120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          120 HHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            999888878899999999999999999886653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.79  E-value=5.7e-19  Score=140.34  Aligned_cols=107  Identities=20%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC------CceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~fD~i~~  180 (231)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++...    .+++++++|+.+....      ..||+|++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEEEE
Confidence            4568999999999999999999777999999999999999998732    3699999999983221      24999999


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..+++|+++++...+++++.++|||||+|++.++...
T Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            9999999888889999999999999999999888654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.79  E-value=2.2e-18  Score=134.57  Aligned_cols=108  Identities=14%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCC----ceEEEEccCCCCC-CCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAK----FVSFLKADFFTWC-PTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~----~i~~~~~d~~~~~-~~~~fD~i~  179 (231)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.+++++...++..    +++++.+|+.... +.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            356799999999999999999855  599999999999999999987665543    7999999987633 346899999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +..+++|++++....+++++.++|||||++++...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            99999999888889999999999999998777654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.78  E-value=1.4e-18  Score=134.99  Aligned_cols=115  Identities=17%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ...+..++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++.       ++.++.+|+.+..+.++
T Consensus        31 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~  102 (211)
T 3e23_A           31 SATLTKFLGEL-PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDA  102 (211)
T ss_dssp             CHHHHHHHTTS-CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSC
T ss_pred             hHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCc
Confidence            55666666643 35689999999999999999999899999999999999999986       36788899888667789


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++..+++|+++++...+++++.++|+|||++++......
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  145 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE  145 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence            9999999999999988889999999999999999988765443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.78  E-value=2.3e-18  Score=134.55  Aligned_cols=109  Identities=11%  Similarity=0.192  Sum_probs=93.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCC----ceEEEEccCCCC-CCCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAK----FVSFLKADFFTW-CPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~----~i~~~~~d~~~~-~~~~~fD~i~  179 (231)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.++++....++.+    +++++.+|+... .+.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            456899999999999999999865  599999999999999999886654433    799999999763 3456899999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +..+++|++++...++++++.++|||||.+++....
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  143 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK  143 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence            999999998888889999999999999977766554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.78  E-value=2.7e-18  Score=140.76  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=102.3

Q ss_pred             HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      +..++..... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....++.++++++.+|+.+.  .++|
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~f  138 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV  138 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCc
Confidence            3445555543 4579999999999999999985 7899999999999999999988877777899999999887  6789


Q ss_pred             eEEEeCCccccc-------ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          176 DLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       176 D~i~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+|++..+++|+       +.+....+++++.++|||||++++.++...
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            999999999999       446778999999999999999999887654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.78  E-value=4.8e-18  Score=132.72  Aligned_cols=103  Identities=22%  Similarity=0.205  Sum_probs=92.4

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++..     .+++++.+|+.+....++||+|++..+++|+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFHHL  119 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchhcC
Confidence            56899999999999999999988999999999999999999875     3689999999994433899999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++.....+++++.++|||||.+++.+..
T Consensus       120 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          120 TDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            8877777999999999999999998743

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.78  E-value=4.8e-18  Score=136.75  Aligned_cols=118  Identities=18%  Similarity=0.107  Sum_probs=100.1

Q ss_pred             cHHHHHHHHcCC--CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CC
Q 026903           95 APIIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        95 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~  170 (231)
                      ......++....  .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....++.++++++.+|+.+ +.
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  110 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF  110 (267)
T ss_dssp             HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC
Confidence            344555555543  3568999999999999999999654 9999999999999999998887777789999999988 44


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.++||+|++..+++|++   ...+++++.++|||||++++.+..
T Consensus       111 ~~~~fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CTTCEEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEee
Confidence            567999999999999994   367899999999999999988764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.78  E-value=6.7e-19  Score=137.05  Aligned_cols=115  Identities=17%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~f  175 (231)
                      ...++.....++.+|||+|||+|.++..+++ .+.+++++|+++.+++.++++....+..++++++++|+.+ ..+.++|
T Consensus        33 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  112 (219)
T 3dlc_A           33 AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYA  112 (219)
T ss_dssp             HHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCE
T ss_pred             HHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccc
Confidence            4445554444445999999999999999998 4779999999999999999998877766789999999998 4566799


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|++..+++|++  +...+++++.++|+|||.+++.+.
T Consensus       113 D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          113 DLIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             EEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cEEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEec
Confidence            9999999999994  456799999999999999998763

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.78  E-value=2.5e-18  Score=137.37  Aligned_cols=118  Identities=19%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  172 (231)
                      ...+..++..... ++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.++++....++.++++++.+|+.+....
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            4555666665543 458999999999999999987 47799999999999999999988776667899999999985446


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ++||+|++..+++|++  +..++++++.++|||||+|++.+.
T Consensus       102 ~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          102 EKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             SCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             CCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecC
Confidence            7899999999999985  346889999999999999998764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.77  E-value=1.8e-18  Score=134.73  Aligned_cols=105  Identities=21%  Similarity=0.322  Sum_probs=94.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++.  .   ..+++++.+|+.+..+.++||+|++..+++|+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~--~---~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~  120 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH--G---LDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHV  120 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG--C---CTTEEEEECCTTSCCCSSCEEEEEEESCGGGS
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhc--C---CCCeEEEecccccCCCCCceeEEEEechhhcC
Confidence            457999999999999999999888999999999999999882  1   14699999999998777899999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +++....+++++.++|+|||.+++.++...
T Consensus       121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  150 (218)
T 3ou2_A          121 PDDRFEAFWESVRSAVAPGGVVEFVDVTDH  150 (218)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            987789999999999999999999988663

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=2.9e-18  Score=137.46  Aligned_cols=107  Identities=17%  Similarity=0.145  Sum_probs=92.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++....+. +++.++.+|+.+ ++++++||+|++..+++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            3568999999999999999999888999999999999999998766543 369999999998 45667999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+++  ...+++++.++|||||+|++.++..
T Consensus       115 ~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          115 HFPN--PASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             GCSC--HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             hcCC--HHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            9964  4689999999999999999876543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3.9e-18  Score=139.58  Aligned_cols=117  Identities=19%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhc---CCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCCC-CC
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~---~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~-~~  170 (231)
                      .....+......++.+|||+|||+|..+..++   ..+.+|+|+|+|+.+++.|+++.... +...+++|+++|+.+ ..
T Consensus        24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  103 (299)
T 3g5t_A           24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF  103 (299)
T ss_dssp             HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence            33344444334467899999999999999999   67789999999999999999987665 334689999999998 33


Q ss_pred             CC------CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          171 PT------ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       171 ~~------~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.      ++||+|++..+++|+   +...+++++.++|+|||.|++.++.
T Consensus       104 ~~~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          104 LGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             GCTTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            44      689999999999999   4568999999999999999986664

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.77  E-value=5.1e-18  Score=137.93  Aligned_cols=117  Identities=21%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             HHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903           99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ..++..... ++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++++....+..++++++.+|+.+..  ++||
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD  131 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVD  131 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCS
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCee
Confidence            344444433 457999999999999999984 677999999999999999999887766678999999997754  7899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|++..+++|+++++...+++++.++|||||.+++.++...
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            99999999999877778999999999999999999887653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.77  E-value=6.6e-18  Score=139.09  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=96.9

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+ +.+.++||+|++..+++
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  196 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTM  196 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchh
Confidence            4579999999999999999986 889999999999999999998887777789999999998 44667999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      |++   ...+++++.++|||||++++.++....
T Consensus       197 ~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          197 YVD---LHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             GSC---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             hCC---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            994   678999999999999999998876544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.77  E-value=4.3e-18  Score=136.67  Aligned_cols=111  Identities=17%  Similarity=0.153  Sum_probs=94.6

Q ss_pred             HHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026903           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i  178 (231)
                      .+++.....++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++..      +++++.+|+.+....++||+|
T Consensus        41 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v  114 (263)
T 3pfg_A           41 AALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAV  114 (263)
T ss_dssp             HHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEE
T ss_pred             HHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEE
Confidence            33333333455899999999999999999999999999999999999998763      589999999995557799999


Q ss_pred             EeCC-cccccCh-HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYT-FFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~-~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++.. +++|++. ++...+++++.++|+|||.|++..+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  153 (263)
T 3pfg_A          115 TCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW  153 (263)
T ss_dssp             EECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            9998 9999964 67789999999999999999987553

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.76  E-value=3.7e-18  Score=132.22  Aligned_cols=110  Identities=22%  Similarity=0.240  Sum_probs=94.2

Q ss_pred             CCCCcEEEecCCCchH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.. ...++..+.+|+++|+|+.+++.++++....+  .+++++.+|+.+ +.+.++||+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChH
Confidence            3468999999999998 45555688899999999999999999876543  358899999988 4456789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +|+++++..++++++.++|+|||++++.++....
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  133 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD  133 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence            9998888899999999999999999999887654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.76  E-value=1.7e-18  Score=135.24  Aligned_cols=116  Identities=20%  Similarity=0.212  Sum_probs=98.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.++++....+.. +++++.+|+.+ ..+.++||+|++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEEeeh
Confidence            445799999999999999998854   69999999999999999987665443 69999999988 45567899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~  225 (231)
                      +++|++  +...+++++.++|+|||.+++.++.......++++
T Consensus       115 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~  155 (219)
T 3dh0_A          115 TFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPP  155 (219)
T ss_dssp             CGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCG
T ss_pred             hhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccccccCCch
Confidence            999995  44789999999999999999999887765555544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.76  E-value=7.3e-18  Score=138.41  Aligned_cols=112  Identities=19%  Similarity=0.223  Sum_probs=97.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      ..++.+|||+|||+|..+..++.   ++.+|+++|+++.+++.++++....+..++++++++|+.+...+++||+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            34568999999999999999962   567999999999999999999988777678999999999954348999999999


Q ss_pred             cccccC-hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          183 FFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       183 ~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +++|++ +.....+++++.++|+|||+|++.++...
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP  231 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            999985 45556799999999999999999887654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.76  E-value=1.6e-18  Score=137.33  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=92.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    .+++++.+|+.+ ..+.++||+|++..++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG----PDLSFIKGDLSSLPFENEQFEAIMAINSL  126 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB----TTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc----CCceEEEcchhcCCCCCCCccEEEEcChH
Confidence            34668999999999999999999999999999999999999987532    469999999998 4457799999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|++  +...+++++.++|+|||++++.++.+.
T Consensus       127 ~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A          127 EWTE--EPLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             TSSS--CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             hhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence            9995  446889999999999999999887654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.76  E-value=3.7e-19  Score=143.18  Aligned_cols=142  Identities=16%  Similarity=0.101  Sum_probs=101.4

Q ss_pred             cccchhhhhccCCCCCCCCCCcHH----HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHH
Q 026903           74 SSGGWEKCWEEGLTPWDIGQPAPI----IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEE  148 (231)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~  148 (231)
                      ...+|+.+|...............    +..++.....++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|++
T Consensus        17 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~   96 (263)
T 2a14_A           17 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEK   96 (263)
T ss_dssp             HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHH
Confidence            346888888765543110001112    2222222234567999999999998888877776 79999999999999998


Q ss_pred             HhccCCC----------------------------CCceE-EEEccCCCCC-----CCCceeEEEeCCcccccC--hHHH
Q 026903          149 LSSSLPN----------------------------AKFVS-FLKADFFTWC-----PTELFDLIFDYTFFCAIE--PEMR  192 (231)
Q Consensus       149 ~~~~~~~----------------------------~~~i~-~~~~d~~~~~-----~~~~fD~i~~~~~~~~~~--~~~~  192 (231)
                      ++.....                            ..++. ++++|+.+..     ..++||+|++..+++|+.  .++.
T Consensus        97 ~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~  176 (263)
T 2a14_A           97 WLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY  176 (263)
T ss_dssp             HHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH
T ss_pred             HHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH
Confidence            7644320                            01243 8999998832     246899999999999863  3677


Q ss_pred             HHHHHHHHhhcCCCcEEEEEEcc
Q 026903          193 AAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       193 ~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .++++++.++|||||+|++.+..
T Consensus       177 ~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          177 RAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HHHHHHHHHHcCCCcEEEEEEee
Confidence            88999999999999999998753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.76  E-value=9.4e-18  Score=138.42  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=101.2

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ..++.... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+..++++++.+|+.+..  ++||
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD  157 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVD  157 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCS
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcC
Confidence            44454443 34579999999999999999985 88999999999999999999887766677999999997763  6899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|++..+++|+++++...+++++.++|+|||++++.++...
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            99999999999877888999999999999999999887654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.76  E-value=5.4e-18  Score=134.47  Aligned_cols=108  Identities=15%  Similarity=0.153  Sum_probs=93.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++....+ ..++.++.+|+.+. .+.++||+|++..+++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            468999999999999999998654 99999999999999999876542 24689999998884 3455899999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++++....+++++.++|+|||+|++.++..
T Consensus       158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            9988778899999999999999999987654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.76  E-value=8.1e-18  Score=135.67  Aligned_cols=118  Identities=21%  Similarity=0.273  Sum_probs=99.7

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCc
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~  174 (231)
                      ...++.... .++.+|||+|||+|.++..+++ .+.+|+++|+|+.+++.++++....+..++++++.+|+.+ ++++++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  129 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS  129 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence            344444443 3558999999999999999987 5789999999999999999998877666789999999988 455679


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++..+++|+++  ...+++++.++|||||++++.++...
T Consensus       130 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          130 FDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             EEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             ccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            999999999999954  36899999999999999999887653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.75  E-value=5.9e-18  Score=138.21  Aligned_cols=109  Identities=18%  Similarity=0.199  Sum_probs=95.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++....+..++++++.+|+.+ ++++++||+|++..++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            35589999999999999999985 779999999999999999988766666689999999998 4566799999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|+++  ...+++++.++|||||+|++.+....
T Consensus       161 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          161 LHSPD--KLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             hhcCC--HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            99965  57899999999999999999886543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=9.4e-18  Score=134.06  Aligned_cols=118  Identities=16%  Similarity=0.097  Sum_probs=98.9

Q ss_pred             cHHHHHHHHcC-C-CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CC
Q 026903           95 APIIVHLHQSG-A-LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        95 ~~~~~~~~~~~-~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~  170 (231)
                      ......++... . .++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.++++....++.++++++.+|+.+ +.
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  110 (257)
T 3f4k_A           31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF  110 (257)
T ss_dssp             HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC
Confidence            34455555544 2 3457999999999999999998544 9999999999999999998887777789999999988 44


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.++||+|++..+++|++   ...+++++.++|+|||++++.+..
T Consensus       111 ~~~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          111 QNEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             CTTCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEee
Confidence            567999999999999984   467899999999999999998743

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.75  E-value=3.9e-18  Score=139.00  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=92.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC---CCceEEEEccCCCC----CCCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN---AKFVSFLKADFFTW----CPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~---~~~i~~~~~d~~~~----~~~~~fD~i~  179 (231)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++......   ..++.+..+|+.+.    .+.++||+|+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            3568999999999999999999999999999999999999987633221   13688999998883    4678999999


Q ss_pred             eC-CcccccCh-----HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DY-TFFCAIEP-----EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~-~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |. .+++|+++     +...++++++.++|||||++++....
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            98 89999976     67889999999999999999887643

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.75  E-value=1e-17  Score=132.74  Aligned_cols=116  Identities=18%  Similarity=0.107  Sum_probs=97.3

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      +..++.....++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+.  ++.++++|+.+....++||+
T Consensus        27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~  104 (246)
T 1y8c_A           27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDL  104 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEE
T ss_pred             HHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCceE
Confidence            4444544334668999999999999999999888999999999999999998766542  68999999988544478999


Q ss_pred             EEeCC-cccccC-hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYT-FFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~-~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++.. +++|++ +++...+++++.++|+|||++++....
T Consensus       105 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99998 999984 467889999999999999999886543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.75  E-value=2.2e-17  Score=129.43  Aligned_cols=107  Identities=25%  Similarity=0.321  Sum_probs=92.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+  .+++++.+|+.+ ..+.++||+|++..+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            346899999999999999999988899999999999999999876654  569999999988 44567899999999966


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +...++..++++++.++|+|||.+++.+..
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            666677789999999999999999887654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.75  E-value=1.1e-17  Score=133.42  Aligned_cols=114  Identities=18%  Similarity=0.086  Sum_probs=97.2

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCce
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELF  175 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~f  175 (231)
                      ..++.... .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++....   .+++++.+|+.+. .+.++|
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCe
Confidence            45555543 345899999999999999998864 47999999999999999987654   4699999999883 456789


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+|++..+++|+++++...+++++.++|+|||++++.+..
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9999999999998888899999999999999999998853

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.75  E-value=4.1e-18  Score=127.91  Aligned_cols=110  Identities=24%  Similarity=0.313  Sum_probs=94.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.      ++++++.+|  ...+.++||+|++..+++|
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~v~~~~~d--~~~~~~~~D~v~~~~~l~~   87 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF------DSVITLSDP--KEIPDNSVDFILFANSFHD   87 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC------TTSEEESSG--GGSCTTCEEEEEEESCSTT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhC------CCcEEEeCC--CCCCCCceEEEEEccchhc
Confidence            34579999999999999999997779999999999999999882      468999999  4445678999999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK  226 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~  226 (231)
                      ++  +...+++++.++|+|||++++.++.......++++.
T Consensus        88 ~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~  125 (170)
T 3i9f_A           88 MD--DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLS  125 (170)
T ss_dssp             CS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGG
T ss_pred             cc--CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHh
Confidence            95  456899999999999999999999887666666654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.74  E-value=1.3e-17  Score=132.22  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=93.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+. .+++++.+|+.+ +.++++||+|++..++
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCCCCCcEEEEEECCch
Confidence            34568999999999999999999888999999999999999998765443 369999999988 4456789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|++  +...+++++.++|+|||++++.++..
T Consensus        98 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           98 HHFS--DVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             hhcc--CHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            9995  34689999999999999999987654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.74  E-value=5.6e-18  Score=138.35  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=88.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCC-----------------------------
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN-----------------------------  155 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~-----------------------------  155 (231)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|+++......                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            35689999999999999999984  67999999999999999997654321                             


Q ss_pred             ----------------------------CCceEEEEccCCCCC------CCCceeEEEeCCccccc----ChHHHHHHHH
Q 026903          156 ----------------------------AKFVSFLKADFFTWC------PTELFDLIFDYTFFCAI----EPEMRAAWAQ  197 (231)
Q Consensus       156 ----------------------------~~~i~~~~~d~~~~~------~~~~fD~i~~~~~~~~~----~~~~~~~~l~  197 (231)
                                                  ..+++|+++|+....      ..++||+|+|..+++|+    +++...++++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                        147999999998733      56799999999999777    5568889999


Q ss_pred             HHHhhcCCCcEEEEEE
Q 026903          198 KIKDFLKPDGELITLM  213 (231)
Q Consensus       198 ~~~~~L~pgG~l~~~~  213 (231)
                      ++.++|+|||+|++..
T Consensus       205 ~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          205 RIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHEEEEEEEEEEC
T ss_pred             HHHHHhCCCcEEEEec
Confidence            9999999999998853

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.74  E-value=4.3e-18  Score=134.93  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=90.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~~  184 (231)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++         +.++.+|+.+   +++.++||+|++..++
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISHFV  111 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEESCG
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECCch
Confidence            458999999999999999999888999999999999999865         6788888877   4567899999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|+++++...+++++.++|||||++++....+.
T Consensus       112 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A          112 EHLDPERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             GGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             hhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            999888889999999999999999998876543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.74  E-value=2.1e-17  Score=132.23  Aligned_cols=116  Identities=10%  Similarity=0.009  Sum_probs=89.8

Q ss_pred             HHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCC-CCCCCCc
Q 026903           97 IIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-TWCPTEL  174 (231)
Q Consensus        97 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~  174 (231)
                      ....++..... ++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|+++.....  ....+...+.. .....++
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~~~~~~  110 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPKELAGH  110 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCGGGTTC
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccccccccCCC
Confidence            44555555543 45799999999999999999999999999999999999999876541  11222222220 0112468


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ||+|++..+++|++.++...+++++.++| |||+|++....
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            99999999999998888889999999999 99999887643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.73  E-value=1.3e-17  Score=133.12  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=90.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++..    ..+++++.+|+.+ ..+.++||+|++..+++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  119 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH  119 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence            568999999999999999999887 99999999999999999875    2469999999988 44567999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++  +...+++++.++|+|||+|++....
T Consensus       120 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          120 YIA--SFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             GCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhh--hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            994  4578999999999999999987543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.73  E-value=1.4e-16  Score=121.50  Aligned_cols=120  Identities=19%  Similarity=0.173  Sum_probs=100.1

Q ss_pred             HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCCCCC
Q 026903           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCPTE  173 (231)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~  173 (231)
                      .....++..... ++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+... +++++.+|+.+..+.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            555566665533 55799999999999999999888899999999999999999887665443 4999999999976677


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +||+|++..++++ ..+....+++.+.++|+|||.+++.+...
T Consensus       119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            8999999887765 24667889999999999999999887654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.73  E-value=3.1e-17  Score=133.66  Aligned_cols=110  Identities=21%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-C-CCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~fD~i~~~~  182 (231)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++....+...+++++++|+.+. . +.++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            34668999999999999999888665 99999999999999999987766556799999999983 3 467899999999


Q ss_pred             cccc--cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCA--IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++|  .+.++...+++++.++|+|||+|++....
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9988  45677889999999999999999987754

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.73  E-value=5.5e-17  Score=129.89  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=90.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++..  ....++.++.+|+.+. .+.++||+|++..+++
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA--GVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTT--TSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--ccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            355899999999999999999988999999999999999999872  2235799999999884 4567899999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++  +...+++++.++|+|||.+++. +.
T Consensus       116 ~~~--~~~~~l~~~~~~L~pgG~l~~~-~~  142 (263)
T 2yqz_A          116 LVP--DWPKVLAEAIRVLKPGGALLEG-WD  142 (263)
T ss_dssp             GCT--THHHHHHHHHHHEEEEEEEEEE-EE
T ss_pred             hcC--CHHHHHHHHHHHCCCCcEEEEE-ec
Confidence            995  4568999999999999999887 44

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.73  E-value=6.8e-17  Score=128.74  Aligned_cols=114  Identities=23%  Similarity=0.320  Sum_probs=94.8

Q ss_pred             HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      .+..++.... .++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+.  +++++++|+.+....++|
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCc
Confidence            3455555443 3458999999999999999999999999999999999999998866542  589999999985555789


Q ss_pred             eEEEeC-CcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          176 DLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       176 D~i~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      |+|++. ..+++++.++..++++.+.++|+|||.+++.
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            999987 4566777778899999999999999998764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.73  E-value=6.5e-17  Score=135.91  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=97.7

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~~  182 (231)
                      ...+|||||||+|.++..+++  ++.+++++|+ +.+++.|+++....+..++++|+.+|+.+.   .+ ++||+|++..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence            457999999999999999988  6779999999 999999999988777667899999999985   34 6899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      ++|+++++...++|+++.++|+|||+|++.++..+.
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            999999888889999999999999999998875543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.72  E-value=7.1e-18  Score=135.22  Aligned_cols=141  Identities=15%  Similarity=0.099  Sum_probs=103.6

Q ss_pred             ccchhhhhccCCCCCCCCCC----cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHH
Q 026903           75 SGGWEKCWEEGLTPWDIGQP----APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEEL  149 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~  149 (231)
                      ..+|+.+|......+.....    ...+..++.....++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~   98 (265)
T 2i62_A           19 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKW   98 (265)
T ss_dssp             HHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHH
Confidence            35788888665443210000    0112233333234557999999999999999998887 999999999999999988


Q ss_pred             hccCCC----------------------------CCce-EEEEccCCCCC--CC---CceeEEEeCCcccccCh--HHHH
Q 026903          150 SSSLPN----------------------------AKFV-SFLKADFFTWC--PT---ELFDLIFDYTFFCAIEP--EMRA  193 (231)
Q Consensus       150 ~~~~~~----------------------------~~~i-~~~~~d~~~~~--~~---~~fD~i~~~~~~~~~~~--~~~~  193 (231)
                      ....+.                            ..++ .++.+|+.+..  +.   ++||+|++..+++++++  ++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~  178 (265)
T 2i62_A           99 LKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYR  178 (265)
T ss_dssp             HTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHH
Confidence            755321                            0127 89999998842  34   68999999999996644  4778


Q ss_pred             HHHHHHHhhcCCCcEEEEEEcc
Q 026903          194 AWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       194 ~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+++++.++|+|||+|++.+..
T Consensus       179 ~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          179 TALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEES
T ss_pred             HHHHHHHhhCCCCcEEEEEecC
Confidence            9999999999999999987743

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.72  E-value=1.2e-16  Score=134.47  Aligned_cols=117  Identities=21%  Similarity=0.189  Sum_probs=100.8

Q ss_pred             HHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903          100 HLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       100 ~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      .++..... +..+|||+|||+|.++..+++  ++.+++++|+ +.+++.++++....++.++++|+.+|+.+..+. .||
T Consensus       193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~D  270 (369)
T 3gwz_A          193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GAD  270 (369)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SCS
T ss_pred             HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-Cce
Confidence            34444433 347999999999999999988  5679999999 999999999988777777899999999976655 899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +|++..++|+++++...++++++.++|+|||+|++.++..+.
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999999999999888889999999999999999998876644

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.72  E-value=3.2e-17  Score=132.77  Aligned_cols=102  Identities=23%  Similarity=0.242  Sum_probs=89.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++..+++++.+|+|+|+|+.+++.++++.      +++.++.+|+.+...+++||+|++..+++|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCEEEEcchhhh
Confidence            45689999999999999999998899999999999999999875      358899999998555679999999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++  +...+++++.++|+|||++++..+..
T Consensus       130 ~~--d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          130 VK--EPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             CS--CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             Cc--CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            85  34689999999999999999877654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.72  E-value=5.8e-17  Score=134.53  Aligned_cols=108  Identities=12%  Similarity=0.037  Sum_probs=96.7

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      ..+|||+|||+|..+..+++  ++.+++++|+ +.+++.++++....++.++++|..+|+.+..+. +||+|++..++||
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh~  247 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAVLHD  247 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-SCSEEEEESCGGG
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-CCcEEEEehhhcc
Confidence            37999999999999999987  6679999999 999999999888776667899999999876555 8999999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      ++++...++++++.++|+|||+|++.++..+.
T Consensus       248 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          248 WDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            99888899999999999999999998876544

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=7e-17  Score=123.23  Aligned_cols=109  Identities=20%  Similarity=0.201  Sum_probs=93.4

Q ss_pred             HHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEE
Q 026903          101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF  179 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~  179 (231)
                      ++.....++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++..      ++.++.+|+.+ ..+.++||+|+
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEE
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEE
Confidence            333334466899999999999999999988899999999999999998762      48899999988 44567899999


Q ss_pred             eC-CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +. .+++|++++....+++.+.++|+|||.+++....
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            98 7889998888899999999999999999886644

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.72  E-value=8.7e-17  Score=122.88  Aligned_cols=109  Identities=11%  Similarity=-0.043  Sum_probs=91.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+++....+. ++++++++|+.+.   .+.++||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence            5678999999999999998877665 899999999999999999877665 5799999999884   3367899999988


Q ss_pred             cccccChHHHHHHHHHHHh--hcCCCcEEEEEEccCC
Q 026903          183 FFCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPIS  217 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~~~  217 (231)
                      .+++. .+...++++.+.+  +|+|||++++......
T Consensus       122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            87654 3567789999999  9999999988776544

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.72  E-value=7.5e-17  Score=131.05  Aligned_cols=105  Identities=20%  Similarity=0.260  Sum_probs=91.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.++++....+  .+++|+.+|+.+...+++||+|++..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~fD~v~~~~~   98 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELNDKYDIAICHAF   98 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCcCCCeeEEEECCh
Confidence            35689999999999999999984   5799999999999999999887654  379999999999555679999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++|+++  ...+++++.++|+|||++++.+..
T Consensus        99 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           99 LLHMTT--PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GGGCSS--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhcCCC--HHHHHHHHHHHcCCCCEEEEEecc
Confidence            999954  368999999999999999988765

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.72  E-value=4.8e-17  Score=126.23  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=91.6

Q ss_pred             HHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCcee
Q 026903           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD  176 (231)
                      .+++.....++.+|||+|||+|.++..+   +. +++++|+++.+++.++++.      .++.++.+|+.+ +.++++||
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD   97 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFD   97 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEE
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEE
Confidence            3455554446789999999999999988   66 9999999999999999886      358899999988 44567899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|++..+++|++  +..++++++.++|||||.+++.++...
T Consensus        98 ~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A           98 VVLLFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             EEEEESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEEEcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            999999999996  446899999999999999999887654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.72  E-value=5.1e-17  Score=135.88  Aligned_cols=119  Identities=11%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             HHHHcCCC-C-CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCC
Q 026903          100 HLHQSGAL-P-KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTE  173 (231)
Q Consensus       100 ~~~~~~~~-~-~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  173 (231)
                      .++..... + +.+|||+|||+|.++..+++  ++.+++++|+ +.+++.++++....+..++++++.+|+.+..  ..+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            44444422 3 57999999999999999988  5679999999 8899999998877766678999999999964  556


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      .||+|++..++||++++...++++++.++|+|||+|++.++..+..
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  293 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDD  293 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            7999999999999998888999999999999999999998766544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.72  E-value=4.6e-17  Score=128.51  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=93.9

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      +..++.....++.+|||+|||+|.++..+++.+.+++++|+|+.+++.++++.      +++.++.+|+.+....++||+
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~  103 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSA  103 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEE
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcE
Confidence            33444433345689999999999999999987779999999999999999875      358999999998544678999


Q ss_pred             EEeC-CcccccC-hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          178 IFDY-TFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       178 i~~~-~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+|. .+++|++ +++...+++++.++|+|||.+++.++...
T Consensus       104 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          104 VVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             EEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence            9965 4889885 46788999999999999999998776553

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.72  E-value=8.5e-17  Score=127.29  Aligned_cols=105  Identities=21%  Similarity=0.216  Sum_probs=90.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC-ccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT-FFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~-~~~  185 (231)
                      .++.+|||+|||+|.++..+++. .+++++|+++.+++.|+++....+  .+++++.+|+.+....++||+|++.. +++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            34589999999999999999988 899999999999999999876543  46899999998854457899999986 889


Q ss_pred             cc-ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          186 AI-EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       186 ~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+ +++....+++++.++|+|||.+++...
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            88 557788999999999999999987554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.72  E-value=5.7e-17  Score=124.55  Aligned_cols=119  Identities=17%  Similarity=0.159  Sum_probs=94.8

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCC
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT  172 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~  172 (231)
                      ...++.....++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.|++++...+..++++++++|+.+.  ...
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   91 (197)
T 3eey_A           12 SHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYID   91 (197)
T ss_dssp             HHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCC
T ss_pred             HHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhcc
Confidence            33344433456689999999999999999873   3599999999999999999988876656899999998874  455


Q ss_pred             CceeEEEeCCccc-------ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 ELFDLIFDYTFFC-------AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 ~~fD~i~~~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++||+|++...+.       ...++....+++++.++|+|||++++..|..
T Consensus        92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            7899999876551       1123455679999999999999999988764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.71  E-value=7.8e-17  Score=133.71  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=97.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|..+..+++  ++.+++++|++ .+++.++++....+..++++|+.+|+.+......||+|++..++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            3458999999999999999987  46799999999 99999999887665556799999999984333459999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      +|++++...++++++.++|+|||++++.++.....
T Consensus       243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  277 (335)
T 2r3s_A          243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSD  277 (335)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTT
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Confidence            99998888999999999999999999998876543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.71  E-value=2.4e-17  Score=135.18  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCC-----ceEEEEccCCC---------CCCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFT---------WCPT  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-----~i~~~~~d~~~---------~~~~  172 (231)
                      ++.+|||+|||+|..+..++. .+.+|+|+|+|+.+++.|+++....+...     +++|.+.|+..         ..+.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            357999999999987766655 44699999999999999999875432211     26788888722         2455


Q ss_pred             CceeEEEeCCccccc-ChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ELFDLIFDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++||+|+|..++||+ ++++...+++++.++|||||++++.+..
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            799999999999875 4345679999999999999999887754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=6.7e-17  Score=129.15  Aligned_cols=112  Identities=22%  Similarity=0.267  Sum_probs=94.6

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  172 (231)
                      .....++.... .++.+|||+|||+|.++..+++.  +.+++++|+++.+++.++++.      ++++++.+|+.+..+.
T Consensus        20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~   93 (259)
T 2p35_A           20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKPA   93 (259)
T ss_dssp             HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCCS
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCcc
Confidence            34455666553 34589999999999999999884  889999999999999999872      3689999999985566


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++||+|++..+++|++  +...+++++.++|+|||++++.+..
T Consensus        94 ~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           94 QKADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             SCEEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             CCcCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            7899999999999994  4578999999999999999988754

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.71  E-value=5.5e-17  Score=131.04  Aligned_cols=117  Identities=25%  Similarity=0.369  Sum_probs=96.7

Q ss_pred             HHHHHHHHcC-C-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CC
Q 026903           96 PIIVHLHQSG-A-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        96 ~~~~~~~~~~-~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~  170 (231)
                      ..+..++... . .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++....+. ++++++.+|+.+ +.
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~  101 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPF  101 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCS
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCC
Confidence            3444555443 2 35689999999999999999884  67999999999999999998876654 369999999998 44


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.++||+|++..+++|+++.  ..+++++.++|+|||++++.+..
T Consensus       102 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          102 EDSSFDHIFVCFVLEHLQSP--EEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCeeEEEEechhhhcCCH--HHHHHHHHHHcCCCcEEEEEEcC
Confidence            56799999999999999643  58899999999999999987743

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.71  E-value=3.3e-17  Score=129.60  Aligned_cols=108  Identities=18%  Similarity=0.092  Sum_probs=88.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEe-
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFD-  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~-  180 (231)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++....+  .+++++.+|+.+.   +++++||+|++ 
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            34568999999999999999988555 89999999999999999887654  5799999998874   55679999998 


Q ss_pred             CCcc--cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFF--CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+.+  +.........+++++.++|||||+|++.++.
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            4443  2233356678899999999999999887654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.71  E-value=4.1e-17  Score=129.23  Aligned_cols=114  Identities=19%  Similarity=0.113  Sum_probs=90.2

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCC
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP  171 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~  171 (231)
                      +.+..+......++.+|||||||+|..+..+++. +.++++||+++.+++.|+++....+  .++.++.+|+.+   ..+
T Consensus        48 ~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~  125 (236)
T 3orh_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc
Confidence            4444554444567789999999999999999885 4589999999999999999887654  468889888766   456


Q ss_pred             CCceeEEEeCC-----cccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYT-----FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~-----~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .++||.|+...     ...|+  .+...+++++.++|||||+|++..
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccCCceEEEeeeecccchhhh--cchhhhhhhhhheeCCCCEEEEEe
Confidence            67899998532     23344  577889999999999999998754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.70  E-value=2.8e-17  Score=131.95  Aligned_cols=110  Identities=18%  Similarity=0.152  Sum_probs=91.9

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCce
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~f  175 (231)
                      ...++.... .++.+|||+|||+|.++..+++++.+|+|+|+|+.+++.++++.       +++|+.+|+.+ +.+.++|
T Consensus        23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~~f   95 (261)
T 3ege_A           23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDKSV   95 (261)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTTCB
T ss_pred             HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCCCE
Confidence            344444333 35689999999999999999999999999999999988776543       69999999988 4556799


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+|++..+++|++  +...+++++.++|| ||.+++.++.+.
T Consensus        96 D~v~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~  134 (261)
T 3ege_A           96 DGVISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFDIR  134 (261)
T ss_dssp             SEEEEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred             eEEEEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence            9999999999994  55789999999999 999988888653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.70  E-value=6.3e-17  Score=128.05  Aligned_cols=103  Identities=21%  Similarity=0.328  Sum_probs=90.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++...    .+++++.+|+.+. .+.++||+|++..++
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  117 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLAL  117 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEeccc
Confidence            4568999999999999999998888 999999999999999987754    2599999999883 456789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|++  +...+++++.++|+|||++++....
T Consensus       118 ~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          118 HYVE--DVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccc--hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            9995  4568999999999999999987754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.70  E-value=2.7e-16  Score=123.69  Aligned_cols=118  Identities=18%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             CcHHHHHH-HHcCCCCCCcEEEecCC-CchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--
Q 026903           94 PAPIIVHL-HQSGALPKGRALVPGCG-TGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--  168 (231)
Q Consensus        94 ~~~~~~~~-~~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--  168 (231)
                      +.+....+ +.....++.+|||+||| +|.++..+++. +.+|+++|+++.+++.|+++....+.  +++++++|+..  
T Consensus        40 p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  117 (230)
T 3evz_A           40 TTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIK  117 (230)
T ss_dssp             CCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSST
T ss_pred             CCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhh
Confidence            45544444 44444566899999999 99999999987 78999999999999999999887765  69999999643  


Q ss_pred             CCCCCceeEEEeCCcccccCh-----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          169 WCPTELFDLIFDYTFFCAIEP-----------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       169 ~~~~~~fD~i~~~~~~~~~~~-----------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..++++||+|+++..+++.+.                 +....+++.+.++|+|||++++..
T Consensus       118 ~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (230)
T 3evz_A          118 GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL  179 (230)
T ss_dssp             TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            444578999999877765432                 123789999999999999998754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.70  E-value=3.6e-16  Score=131.12  Aligned_cols=121  Identities=20%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             HHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           97 IIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        97 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ....++..... ++.+|||+|||+|.++..+++  ++.+++++|+ +.+++.++++....+..++++++.+|+.+...+ 
T Consensus       178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-  255 (359)
T 1x19_A          178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-  255 (359)
T ss_dssp             HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-
T ss_pred             hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-
Confidence            34445554433 447999999999999999988  4679999999 999999999987766666799999999985322 


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      .+|+|++..++++++++...++++++.++|+|||+|++.++.....
T Consensus       256 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  301 (359)
T 1x19_A          256 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP  301 (359)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT
T ss_pred             CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC
Confidence            3499999999999998888999999999999999999988766543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=1.1e-16  Score=120.74  Aligned_cols=103  Identities=16%  Similarity=0.063  Sum_probs=87.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++....+..+++ ++.+|..+..+.  ++||+|++..
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            34579999999999999999885  679999999999999999998887766678 888998774443  7899999999


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++++      ..+++.+.++|+|||++++..+..
T Consensus       103 ~~~~------~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A          103 GLTA------PGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             -TTC------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             cccH------HHHHHHHHHhcCCCCEEEEEeecc
Confidence            8877      457899999999999999877643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.70  E-value=2.7e-16  Score=132.50  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             HHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903          100 HLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       100 ~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      .++..... ++.+|||+|||+|.++..+++  ++.+++++|+ +.+++.++++....++.++++|+.+|+.+..+. .||
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D  250 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TAD  250 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEE
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CCC
Confidence            34444333 457999999999999999987  4679999999 999999999987776666899999999885544 499


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|++..++||++++...++++++.++|+|||+|++.++
T Consensus       251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99999999999888778999999999999999999887

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.69  E-value=1.5e-16  Score=132.12  Aligned_cols=118  Identities=17%  Similarity=0.148  Sum_probs=98.7

Q ss_pred             HHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ..++.....++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.++++....+..++++++.+|+.+..+ .+||
T Consensus       158 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D  235 (334)
T 2ip2_A          158 HEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SNGD  235 (334)
T ss_dssp             HHHHHHSCCTTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SSCS
T ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CCCC
Confidence            444444433338999999999999999987  4679999999 99999999987654444679999999998654 6799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +|++..++|+++++...++++++.++|+|||+|++.++....
T Consensus       236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  277 (334)
T 2ip2_A          236 IYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA  277 (334)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             EEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999999999998888889999999999999999999876543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.69  E-value=3.6e-17  Score=132.37  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             CCCCCcEEEecCCCchHH-HHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~-~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..++.+|||||||+|.++ ..+++ .+.+|+|+|+++++++.|+++....+. ++++|+++|+.+.. .++||+|++...
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEECCC
Confidence            345689999999998665 45555 788999999999999999999877666 68999999999853 678999997654


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                         .  ++..++++++.++|||||+|++....
T Consensus       198 ---~--~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          198 ---A--EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             ---C--SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ---c--cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence               2  35578999999999999999987743

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.69  E-value=4e-16  Score=120.84  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=87.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++++++.|+++....+..++++++.+|+.+ ......||+|++...+ 
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-  132 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-  132 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC-
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc-
Confidence            45589999999999999999998889999999999999999998877766689999999998 3334579999987644 


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                        +   .. +++.+.++|+|||++++.....
T Consensus       133 --~---~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          133 --S---QA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             --C---HH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             --c---HH-HHHHHHHhcCCCcEEEEEecCc
Confidence              1   23 8999999999999999877543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.69  E-value=1.4e-16  Score=124.14  Aligned_cols=106  Identities=16%  Similarity=0.102  Sum_probs=86.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|.++..+++  ++.+++|+|+++.+++.|+++....+. ++++++++|+.+.   ++.++||+|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            3467999999999999999987  467999999999999999998876654 5799999999883   456789999988


Q ss_pred             CcccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ....+....      ....+++.+.++|+|||++++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            654432111      12578999999999999998865

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.69  E-value=6.2e-17  Score=126.68  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~~~  181 (231)
                      ++.+|||||||+|..+..+++  ++.+|+|+|+++.+++.|+++....+.. ++.++.+|+.+.    ++.++||.|++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            557999999999999999987  4668999999999999999988766543 699999998873    567899999987


Q ss_pred             CcccccChHHH------HHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPEMR------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~~~------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +...+......      ..+++.+.++|||||+|++.+
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            55443322111      358999999999999999876

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.69  E-value=2.4e-16  Score=126.36  Aligned_cols=111  Identities=20%  Similarity=0.140  Sum_probs=90.3

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCcee
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD  176 (231)
                      +.+++.....++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++...       .++.+|+.+ +.+.++||
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~d~~~~~~~~~~fD  116 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-------NVVEAKAEDLPFPSGAFE  116 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-------CEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC-------CEEECcHHHCCCCCCCEE
Confidence            3444443333668999999999999999999989999999999999999988641       278899888 44567899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|++..++.|+.++ ...+++++.++|+|||.+++..+..
T Consensus       117 ~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          117 AVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             EEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             EEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            99998877776433 6789999999999999999877653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.69  E-value=3.2e-16  Score=126.73  Aligned_cols=106  Identities=16%  Similarity=0.117  Sum_probs=90.7

Q ss_pred             CCcEEEecCCC---chHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------------CC
Q 026903          109 KGRALVPGCGT---GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------------CP  171 (231)
Q Consensus       109 ~~~vLDiGcG~---G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------------~~  171 (231)
                      ..+|||+|||+   |.++..+.+  ++.+|+++|+|+.+++.|+++....   ++++|+.+|+.++            ++
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccCC
Confidence            37999999999   988776655  6789999999999999999987542   4799999999862            22


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..+||+|++..++||++++....+++++.++|+|||+|++.++..+
T Consensus       155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence            2479999999999999877788999999999999999999988763

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.69  E-value=2.3e-16  Score=129.88  Aligned_cols=109  Identities=19%  Similarity=0.179  Sum_probs=90.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCC-----C--CCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTW-----C--PTE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~-----~--~~~  173 (231)
                      ++.+|||+|||+|.++..+++ .+.+++++|+++.+++.++++....+      ...+++++++|+.+.     +  +.+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            567999999999999999986 45699999999999999998765321      123699999999884     3  235


Q ss_pred             ceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +||+|++..++||+  +.++...+++++.++|+|||.+++.++..
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            89999999999997  44677899999999999999999887643

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.69  E-value=1.5e-16  Score=125.61  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|++++...++.++++++.+|+.+..+   .++||+|++..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            568999999999999999998  6789999999999999999999887776789999999988543   57899999765


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..     .....+++.+.++|+|||+|++...
T Consensus       151 ~~-----~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          151 AK-----AQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             TS-----SSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             cH-----HHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            43     2346789999999999999987443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.68  E-value=1.3e-16  Score=135.04  Aligned_cols=108  Identities=22%  Similarity=0.259  Sum_probs=91.2

Q ss_pred             CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccC-----C--CCCceEEEEccCCC-------CC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL-----P--NAKFVSFLKADFFT-------WC  170 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~-----~--~~~~i~~~~~d~~~-------~~  170 (231)
                      ++.+|||+|||+|.++..+++   ++.+|+|+|+|+.+++.|+++....     +  ..++++|+.+|+.+       ++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            567999999999999999987   4669999999999999999876432     1  12479999999988       45


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ++++||+|+++.+++|+++  ...+++++.++|||||+|++.++..+
T Consensus       163 ~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccc
Confidence            5679999999999999854  57899999999999999999876553

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.68  E-value=5.9e-16  Score=119.61  Aligned_cols=114  Identities=11%  Similarity=-0.060  Sum_probs=91.9

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-  171 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-  171 (231)
                      .....++.... .++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.++++....+. ++++++.+|+.+..+ 
T Consensus        27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~  105 (204)
T 3e05_A           27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD  105 (204)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc
Confidence            33344444443 355899999999999999999855  7999999999999999998876655 579999999987443 


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...||+|++..+++     ....+++++.++|+|||++++....
T Consensus       106 ~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          106 LPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             SCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            36899999887765     3357899999999999999987654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.68  E-value=1.7e-16  Score=127.99  Aligned_cols=108  Identities=20%  Similarity=0.261  Sum_probs=85.8

Q ss_pred             CCCcEEEecCCCchH----HHHhcCC------CCeEEEEeCChHHHHHHHHHhccC----------------------C-
Q 026903          108 PKGRALVPGCGTGYD----VVAMASP------ERYVVGLEISDIAIKKAEELSSSL----------------------P-  154 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~----~~~l~~~------~~~v~~iD~s~~~i~~a~~~~~~~----------------------~-  154 (231)
                      ++.+|||+|||+|..    +..+++.      +.+|+|+|+|+.+++.|+++....                      . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            347999999999984    4444431      358999999999999999875210                      0 


Q ss_pred             -------CCCceEEEEccCCCC-CC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          155 -------NAKFVSFLKADFFTW-CP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       155 -------~~~~i~~~~~d~~~~-~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                             +..+|.|.++|+.+. .+ .+.||+|+|.++++|++++.+.++++++.++|+|||+|++ ..+.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l-g~sE  254 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA-GHSE  254 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE-CTTC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE-Eecc
Confidence                   013699999999983 33 4689999999999999999899999999999999999865 4443

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.68  E-value=2.3e-16  Score=128.36  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=83.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCC-----------------------------
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNA-----------------------------  156 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~-----------------------------  156 (231)
                      .++.+|||+|||+|.....++. .+.+|+|+|+|+.+++.|++++......                             
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4668999999999996554544 4679999999999999998865432100                             


Q ss_pred             CceEEEEccCCCC-------CCCCceeEEEeCCcccccCh--HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          157 KFVSFLKADFFTW-------CPTELFDLIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       157 ~~i~~~~~d~~~~-------~~~~~fD~i~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..+.++.+|+.+.       .++++||+|++..+++|+++  ++..++++++.++|||||+|++...
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            0156777888872       22356999999999999654  4788999999999999999998753

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.68  E-value=3.9e-16  Score=121.08  Aligned_cols=109  Identities=20%  Similarity=0.135  Sum_probs=90.3

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCce
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELF  175 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~f  175 (231)
                      ...++... ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++....+.. +++++.+|+.+.. ..++|
T Consensus        66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCc
Confidence            34444444 345689999999999999999998889999999999999999998776544 6999999998843 45689


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+|++..+++|+++        .+.++|+|||+|++..-.
T Consensus       145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence            99999999999864        478999999999886654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.68  E-value=4.8e-16  Score=131.15  Aligned_cols=107  Identities=19%  Similarity=0.176  Sum_probs=93.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...++.  +++++.+|+.+... .++||+|+++..++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchh
Confidence            3568999999999999999999889999999999999999999887653  38999999999544 47999999999988


Q ss_pred             c---cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 A---IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +   ...+....+++.+.++|+|||+++++...
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            7   34477789999999999999999987643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.68  E-value=5.2e-17  Score=127.00  Aligned_cols=102  Identities=19%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++       .++.+..+|+.+.     ....+||+|++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  123 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICAN  123 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEEC
Confidence            3458999999999999999999999999999999999999987       2466788877663     334569999999


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      .+++ .  .+...+++++.++|+|||+|++.++.+..
T Consensus       124 ~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  157 (227)
T 3e8s_A          124 FALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWS  157 (227)
T ss_dssp             SCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred             chhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence            9988 3  34468999999999999999998886643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.67  E-value=1.5e-16  Score=123.00  Aligned_cols=104  Identities=19%  Similarity=0.191  Sum_probs=88.7

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+++....+..+ ++++.+|+.+.. .++||+|++...+
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~  135 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILA  135 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcH
Confidence            34568999999999999999998765 99999999999999999987766544 999999998854 4789999998777


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++     ..+++++.++|+|||++++.++..
T Consensus       136 ~~~-----~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          136 EIL-----LDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             HHH-----HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             HHH-----HHHHHHHHHhcCCCCEEEEEecCc
Confidence            653     678999999999999999876654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.67  E-value=5.6e-17  Score=122.43  Aligned_cols=103  Identities=11%  Similarity=0.072  Sum_probs=86.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|-++..++.  ++.+|+++|+|+.+++.+++++...+...++.+  .|.....++++||+|+...++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence            4468999999999999999976  467999999999999999999988776556666  666665567889999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |++  ++++..+.++.+.|+|||+++...
T Consensus       126 HlL--~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          126 PVL--KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             Hhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence            999  566677779999999999876543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.67  E-value=4.3e-16  Score=120.50  Aligned_cols=147  Identities=14%  Similarity=0.178  Sum_probs=99.8

Q ss_pred             cCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHHcC----CCCCCcEEEecCCCchHHHHhcC--
Q 026903           55 NVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG----ALPKGRALVPGCGTGYDVVAMAS--  128 (231)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~--  128 (231)
                      ....+..+.+.+........  .|..+|......   .........++...    ..++.+|||+|||+|..+..++.  
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~   87 (207)
T 1jsx_A           13 GISLTDHQKNQLIAYVNMLH--KWNKAYNLTSVR---DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR   87 (207)
T ss_dssp             TCCCCHHHHHHHHHHHHHHH--HHC---------------CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHH--HhcccccccccC---CHHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC
Confidence            44566666666666553222  265555433211   11122223333222    22468999999999999999987  


Q ss_pred             CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE
Q 026903          129 PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE  208 (231)
Q Consensus       129 ~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  208 (231)
                      ++.+++++|+++.+++.++++....+.. +++++.+|+.+..+.++||+|++..+ +     ....+++.+.++|+|||.
T Consensus        88 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-~-----~~~~~l~~~~~~L~~gG~  160 (207)
T 1jsx_A           88 PEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-A-----SLNDMVSWCHHLPGEQGR  160 (207)
T ss_dssp             TTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS-S-----SHHHHHHHHTTSEEEEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc-C-----CHHHHHHHHHHhcCCCcE
Confidence            4679999999999999999988776554 39999999999766678999997643 2     235789999999999999


Q ss_pred             EEEEE
Q 026903          209 LITLM  213 (231)
Q Consensus       209 l~~~~  213 (231)
                      +++..
T Consensus       161 l~~~~  165 (207)
T 1jsx_A          161 FYALK  165 (207)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98864

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.67  E-value=5.3e-16  Score=130.05  Aligned_cols=106  Identities=19%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..+++  ++.+++++|+ +.+++.++++....+..++++|+.+|+.+..+. .||+|++..++|
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl~  260 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KADAIILSFVLL  260 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEEEEEEESCGG
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-CccEEEEccccc
Confidence            457999999999999999987  4568999999 999999999987776666899999999885554 499999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++++...++++++.++|+|||+|++.++.
T Consensus       261 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          261 NWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            998888789999999999999999998876

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.67  E-value=6.3e-16  Score=130.25  Aligned_cols=121  Identities=15%  Similarity=0.114  Sum_probs=95.3

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTW  169 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~~  169 (231)
                      ......++..... ++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.++++...+++.+  +++|+.+|+.+.
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~  287 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  287 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc
Confidence            3333445554433 3479999999999999999984  6799999999999999999987765432  588999999997


Q ss_pred             CCCCceeEEEeCCcccc---cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          170 CPTELFDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+.++||+|+++..+++   +......++++.+.++|+|||+++++...
T Consensus       288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            77789999999988875   33345567899999999999999987643

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.67  E-value=3e-16  Score=118.07  Aligned_cols=98  Identities=16%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++.          ..+++++++|+.++.+.++||+|+++..+++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            566899999999999999999988 99999999999987          1468999999999766689999999988876


Q ss_pred             cChH-------HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          187 IEPE-------MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       187 ~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .++.       ....+++++.+.| |||.+++.....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~  126 (170)
T 3q87_B           91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA  126 (170)
T ss_dssp             TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred             CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence            5432       3456788888888 999999877543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.67  E-value=7.6e-16  Score=124.63  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      +..++.....++.+|||+|||+|..+..+++  ++.+|+++|+|+.+++.++++....+.. +++++++|+.+..+.++|
T Consensus        99 ~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~f  177 (276)
T 2b3t_A           99 VEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQF  177 (276)
T ss_dssp             HHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCCE
T ss_pred             HHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccCCc
Confidence            3444443334557999999999999999986  4679999999999999999998766543 699999999986656789


Q ss_pred             eEEEeCCccccc-------------Ch----------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          176 DLIFDYTFFCAI-------------EP----------EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       176 D~i~~~~~~~~~-------------~~----------~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      |+|+++..++..             |.          .....+++.+.++|+|||++++.
T Consensus       178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999998544322             10          35578999999999999999875

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.66  E-value=3.8e-16  Score=125.96  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC-C--CeEEEEeCChH------HHHHHHHHhccCCCCCceEEEEcc-CCC---CCCCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDI------AIKKAEELSSSLPNAKFVSFLKAD-FFT---WCPTE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~iD~s~~------~i~~a~~~~~~~~~~~~i~~~~~d-~~~---~~~~~  173 (231)
                      .++.+|||+|||+|.++..+++. |  .+|+|+|+|+.      +++.++++....+..++++++.+| ...   +++.+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  121 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ  121 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence            45689999999999999999885 3  79999999997      999999998776665689999998 332   33567


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +||+|++..+++|+++..  .+++.+..+++|||++++.++....
T Consensus       122 ~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          122 HFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             CCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred             CEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCC
Confidence            899999999999997543  4777788888889999998887643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.66  E-value=2.9e-16  Score=121.33  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=87.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC---CCCc-eeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC---PTEL-FDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~---~~~~-fD~i~~~  181 (231)
                      ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...+.. ++++++.+|+.+..   +.++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            567999999999999998777664 8999999999999999998877653 57999999988743   2468 9999998


Q ss_pred             CcccccChHHHHHHHHHH--HhhcCCCcEEEEEEccCC
Q 026903          182 TFFCAIEPEMRAAWAQKI--KDFLKPDGELITLMFPIS  217 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~~~  217 (231)
                      ..++ .  .....+++.+  .++|+|||++++.+.+..
T Consensus       133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            7754 2  4556778888  667999999988776654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.66  E-value=4e-16  Score=118.56  Aligned_cols=108  Identities=17%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----CCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~fD~i~~  180 (231)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|+++....+..++++++++|+.+..+     .++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            356899999999999999888765 59999999999999999998776655679999999988322     568999999


Q ss_pred             CCcccccChHHHHHHHHHH--HhhcCCCcEEEEEEccCC
Q 026903          181 YTFFCAIEPEMRAAWAQKI--KDFLKPDGELITLMFPIS  217 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~~~  217 (231)
                      ...++...   ....++.+  .++|+|||++++......
T Consensus       123 ~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          123 DPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             CCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            87755332   23455555  888999999988665543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=3.9e-16  Score=121.70  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~  181 (231)
                      .++.+|||+|||+|.++..+++  ++.+|+|+|+|+.+++.|+++....+. .++.++++|+.+.   ++.++||.|++.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            3457999999999999999987  477999999999999999998876654 4699999999873   566789999876


Q ss_pred             CcccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ....+....      ....+++.+.++|+|||.|++.+
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            543322110      13678999999999999998876

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.65  E-value=1.6e-15  Score=136.19  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=91.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccC-----CCCCceEEEEccCCC-CCCCCceeE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSL-----PNAKFVSFLKADFFT-WCPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~-~~~~~~fD~  177 (231)
                      .++.+|||+|||+|.++..|++.+   .+|+|+|+++.+++.|++++...     ....+++|+++|+.+ +...++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            366899999999999999999976   69999999999999998855421     112479999999999 445579999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |++..+++|++++....+++++.++|+|| .+++.+.
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            99999999999888888999999999999 7766653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.65  E-value=4.1e-16  Score=124.34  Aligned_cols=109  Identities=14%  Similarity=0.101  Sum_probs=87.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCC----CCeEEEEeCChHHHHHHHHHhccC---CCCCc----------------------
Q 026903          108 PKGRALVPGCGTGYDVVAMASP----ERYVVGLEISDIAIKKAEELSSSL---PNAKF----------------------  158 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~~iD~s~~~i~~a~~~~~~~---~~~~~----------------------  158 (231)
                      ++.+|||+|||+|.++..+++.    +.+|+|+|+|+.+++.|+++....   ++..+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4579999999999999999875    568999999999999999887654   22112                      


Q ss_pred             ---eE-------------EEEccCCCCC------CCCceeEEEeCCcccccC-------hHHHHHHHHHHHhhcCCCcEE
Q 026903          159 ---VS-------------FLKADFFTWC------PTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       159 ---i~-------------~~~~d~~~~~------~~~~fD~i~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~l  209 (231)
                         ++             |+++|+.+..      ...+||+|+|+..+.+..       .+....+++++.++|+|||+|
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               66             9999999855      344899999987766543       256678999999999999999


Q ss_pred             EEEEccC
Q 026903          210 ITLMFPI  216 (231)
Q Consensus       210 ~~~~~~~  216 (231)
                      ++.....
T Consensus       211 ~~~~~~~  217 (250)
T 1o9g_A          211 AVTDRSR  217 (250)
T ss_dssp             EEEESSS
T ss_pred             EEeCcch
Confidence            9855543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.65  E-value=7.2e-16  Score=123.63  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~  183 (231)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..+++.++++++++|+.+..   +.++||+|+++..
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            568999999999999999998665 999999999999999999988877778999999999843   3679999999866


Q ss_pred             cccc------------------ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAI------------------EPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~------------------~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +...                  .......+++.+.++|+|||+++++.
T Consensus       129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             C-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            5432                  11345679999999999999998854

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.65  E-value=3.6e-16  Score=126.73  Aligned_cols=106  Identities=14%  Similarity=-0.024  Sum_probs=90.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++.++++++++|+.+....++||+|++....
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            44578999999999999999999776 69999999999999999998887777799999999997667799999986442


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..      ..+++.+.++|+|||++++.++.+.
T Consensus       203 ~~------~~~l~~~~~~LkpgG~l~~~~~~~~  229 (278)
T 2frn_A          203 RT------HEFIPKALSIAKDGAIIHYHNTVPE  229 (278)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             hH------HHHHHHHHHHCCCCeEEEEEEeecc
Confidence            22      4678899999999999999888753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.65  E-value=2.4e-16  Score=118.03  Aligned_cols=104  Identities=18%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----CCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|.++..+++.+..|+++|+++.+++.++++....+.  +++++++|+.+..+     .++||+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            568999999999999999999888899999999999999998876554  68999999887321     24799999987


Q ss_pred             cccccChHHHHHHHHHHH--hhcCCCcEEEEEEccCC
Q 026903          183 FFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPIS  217 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~~  217 (231)
                      +++ -..   ..+++.+.  ++|+|||++++.+....
T Consensus       119 ~~~-~~~---~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          119 PYA-MDL---AALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             CTT-SCT---THHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             CCc-hhH---HHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            765 211   23455555  99999999988776553

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.65  E-value=8.1e-16  Score=128.49  Aligned_cols=113  Identities=14%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             HHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903          101 LHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus       101 ~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      ++..... ++.+|||+|||+|..+..+++  ++.+++++|+ +.++.  +++....+..++++|+.+|+.+..+  +||+
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~~D~  250 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP--HADV  250 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC--CCSE
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC--CCcE
Confidence            4444433 347999999999999999988  5668999999 45544  3333333344679999999987655  8999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      |++..++||++++...++|+++.++|||||+|++.++....
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            99999999999888889999999999999999999876544

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.64  E-value=7.2e-16  Score=128.85  Aligned_cols=104  Identities=21%  Similarity=0.231  Sum_probs=88.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++...+++.++++++++|+.+. .+.++||+|++..+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3568999999999999999999876 999999995 9999999988887777899999999994 556799999998765


Q ss_pred             ccc-ChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          185 CAI-EPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      +++ .......+++.+.++|||||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            444 234567889999999999999863

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.64  E-value=1.2e-15  Score=116.03  Aligned_cols=106  Identities=22%  Similarity=0.158  Sum_probs=90.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++....+...+++++.+|+.+..+. ..||+|++..++
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            3456899999999999999999987899999999999999999887776656799999998873333 589999998877


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++     ..+++.+.++|+|||.+++..+..
T Consensus       111 ~~~-----~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          111 GEL-----QEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             TCH-----HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             HHH-----HHHHHHHHHhcCCCcEEEEEecCc
Confidence            654     678999999999999999877643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.64  E-value=5.2e-16  Score=117.14  Aligned_cols=108  Identities=19%  Similarity=0.110  Sum_probs=87.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~  183 (231)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|+++....++.++++++.+|+.+.  ...+.||+|++...
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            356899999999999999998875 599999999999999999998776666899999999883  22357999999877


Q ss_pred             ccccChHHHHHHHHHHH--hhcCCCcEEEEEEccCC
Q 026903          184 FCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPIS  217 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~~  217 (231)
                      ++.   .....+++.+.  ++|+|||++++......
T Consensus       110 ~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          110 YAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            642   34456677776  99999999988776543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.64  E-value=5.5e-15  Score=123.69  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=98.3

Q ss_pred             HHHHcCCCCC-CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903          100 HLHQSGALPK-GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       100 ~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      .++.....++ .+|+|||||+|.++..+++  ++.+++..|. |.+++.++++.... ..++|+|+.+|+++... ..+|
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~-~~~rv~~~~gD~~~~~~-~~~D  246 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ-EEEQIDFQEGDFFKDPL-PEAD  246 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCCS
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc-ccCceeeecCccccCCC-CCce
Confidence            3444333333 7999999999999999998  6678999998 88999999887644 35789999999998533 3589


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP  223 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  223 (231)
                      +|++..++|+++++...++|++++++|+|||+|++.++..+.+..+|
T Consensus       247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~  293 (353)
T 4a6d_A          247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP  293 (353)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC
T ss_pred             EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC
Confidence            99999999999998889999999999999999999998765544444

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.64  E-value=1.3e-15  Score=127.35  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=89.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++ +++.|+++...+++.++++++.+|+.+...+++||+|++..+++
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            3568999999999999999998765 999999997 78999998887777678999999999854456899999998888


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      |+..+.....+..+.++|+|||.+++
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEE
Confidence            88766666778889999999999874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.64  E-value=3e-16  Score=122.96  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=87.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-------CceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-------ELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-------~~fD~  177 (231)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+..++++++.+|+.+..+.       ++||+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL  143 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence            5679999999999999999984   6799999999999999999998877777899999998773211       68999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |++...     ......+++.+.++|+|||+|++.+....
T Consensus       144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            996553     23456789999999999999988665443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.64  E-value=1.9e-15  Score=118.85  Aligned_cols=108  Identities=19%  Similarity=0.107  Sum_probs=89.1

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCce
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELF  175 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~f  175 (231)
                      ...++.... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+   +++++.+|+.+.. ..++|
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~f  135 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPY  135 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCc
Confidence            344444443 355799999999999999999877899999999999999999987654   6999999998833 35689


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+|++..+++|++.        .+.++|+|||++++...+.
T Consensus       136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECSS
T ss_pred             cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcCC
Confidence            99999999999853        5888999999998876543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.64  E-value=3.6e-16  Score=125.09  Aligned_cols=110  Identities=20%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             HHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEE
Q 026903          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF  179 (231)
Q Consensus       100 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~  179 (231)
                      +.+.....++.+|||+|||+|.++..+++.|.+|+++|+++.+++.++++...++..  ++++.+|+.+..+.++||+|+
T Consensus       112 ~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv  189 (254)
T 2nxc_A          112 KALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLV  189 (254)
T ss_dssp             HHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEE
T ss_pred             HHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEE
Confidence            334333456689999999999999999998889999999999999999998876544  899999988755567899999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++...+     ....++..+.++|+|||++++..+..
T Consensus       190 ~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~  221 (254)
T 2nxc_A          190 ANLYAE-----LHAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             EECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             ECCcHH-----HHHHHHHHHHHHcCCCCEEEEEeecc
Confidence            875543     34678999999999999999876543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.64  E-value=1.5e-15  Score=118.93  Aligned_cols=99  Identities=21%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~  183 (231)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.        ..++.+|+.+   ..++++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            45689999999999999999988889999999999999998754        3688899876   334578999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++|+++.  ..+++++.++|+|||.+++....
T Consensus       103 l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          103 LEHLFDP--WAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             GGGSSCH--HHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             hhhcCCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence            9999643  58999999999999999987644

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.63  E-value=9.4e-16  Score=125.03  Aligned_cols=107  Identities=17%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             CCCcEEEecCCCchHHHHhc----C--CCCe--EEEEeCChHHHHHHHHHhccCCCCCceE--EEEccCCCC-------C
Q 026903          108 PKGRALVPGCGTGYDVVAMA----S--PERY--VVGLEISDIAIKKAEELSSSLPNAKFVS--FLKADFFTW-------C  170 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~----~--~~~~--v~~iD~s~~~i~~a~~~~~~~~~~~~i~--~~~~d~~~~-------~  170 (231)
                      ++.+|||||||+|..+..++    .  ++..  ++++|+|+++++.|+++........++.  +..++..+.       +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            44799999999997665332    2  3444  4999999999999999875432123344  445555442       3


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++++||+|++..+++|++  +..++|+++.++|||||+|++.....
T Consensus       132 ~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             CCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             CCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            467899999999999995  44678999999999999999886554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.63  E-value=1.4e-15  Score=128.35  Aligned_cols=106  Identities=17%  Similarity=0.126  Sum_probs=91.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|+++...+++.++++++.+|+.+...+++||+|++..+.+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            4568999999999999999999887 99999999 999999999988877778999999999855448899999977666


Q ss_pred             ccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 AIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++.. .....+++.+.++|+|||++++..
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            5543 456788999999999999997643

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.63  E-value=1.5e-17  Score=131.77  Aligned_cols=101  Identities=20%  Similarity=0.245  Sum_probs=82.2

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++.++++|+++|+.+..+.++||+|++..++++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence            67899999999999999999999999999999999999999998877656899999999986666799999999888876


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +..  ...+.++.++|+|||.++
T Consensus       158 ~~~--~~~~~~~~~~L~pgG~~i  178 (241)
T 3gdh_A          158 DYA--TAETFDIRTMMSPDGFEI  178 (241)
T ss_dssp             GGG--GSSSBCTTTSCSSCHHHH
T ss_pred             chh--hhHHHHHHhhcCCcceeH
Confidence            432  123444555555555543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.63  E-value=6.4e-16  Score=120.99  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=85.5

Q ss_pred             CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCC----CceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPT----ELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~----~~fD~  177 (231)
                      ++.+|||+|||+|..+..+++   ++.+|+++|+++.+++.|++++...++.++++++.+|+.+.   ...    ++||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            568999999999999999998   36799999999999999999988777667899999998662   221    58999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++....++.  .....++..+ ++|+|||+|++.+..
T Consensus       138 V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          138 VFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             EEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             EEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            9998776665  2334566777 999999999875543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.63  E-value=1.3e-15  Score=117.65  Aligned_cols=106  Identities=9%  Similarity=0.017  Sum_probs=85.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~~  184 (231)
                      ++.+|||+|||+|.++..++..+. +|+++|+++.+++.|+++....+. ++++++++|+.+.  ...++||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            567999999999999998777664 999999999999999999887765 5799999998872  345689999998775


Q ss_pred             cccChHHHHHHHHHHHh--hcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKD--FLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~~~  217 (231)
                      + .  .....+++.+.+  +|+|||++++.+....
T Consensus       133 ~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          133 R-R--GLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             S-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             C-C--CcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            4 2  334566777765  5999999988776554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.63  E-value=3.8e-15  Score=116.97  Aligned_cols=104  Identities=16%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~  179 (231)
                      .|+.+|||+|||+|.++..+++   +..+|+++|+++++++.++++....   .++..+.+|...+    ...+.+|+|+
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~vDvVf  152 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGVDGLY  152 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceEEEEE
Confidence            4668999999999999999997   5569999999999999999987665   3789999988772    3456899998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +..  .+.  ++...++.++.+.|||||.+++......
T Consensus       153 ~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~  186 (233)
T 4df3_A          153 ADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARS  186 (233)
T ss_dssp             ECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             Eec--cCC--hhHHHHHHHHHHhccCCCEEEEEEeccc
Confidence            643  222  4557889999999999999988765443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.62  E-value=9.8e-16  Score=119.92  Aligned_cols=105  Identities=19%  Similarity=0.057  Sum_probs=87.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC------CCceeE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~fD~  177 (231)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+      .++||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            35689999999999999999984   779999999999999999999887777789999999977322      157999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++....     .....+++.+.++|+|||++++.+...
T Consensus       137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            9976553     344678999999999999888765433

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.62  E-value=2.5e-15  Score=125.15  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=86.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+++ +++.|+++...+++.++++++.+|+.+. .+.++||+|++..+.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            4568999999999999999998776 999999997 9999999988877767899999999984 445789999998743


Q ss_pred             ccc-ChHHHHHHHHHHHhhcCCCcEEE
Q 026903          185 CAI-EPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +.+ .......+++.+.++|||||+++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            322 23566789999999999999987

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=1.6e-15  Score=121.74  Aligned_cols=106  Identities=18%  Similarity=0.160  Sum_probs=86.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhcc---CCCCCceEEEEccCCCC--------CCCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTW--------CPTEL  174 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~~~~--------~~~~~  174 (231)
                      ++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++..   +++.++++++++|+.+.        .+.++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            4579999999999999999884  46999999999999999999987   77667899999999986        34678


Q ss_pred             eeEEEeCCccccc----------------ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          175 FDLIFDYTFFCAI----------------EPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       175 fD~i~~~~~~~~~----------------~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ||+|+++..+...                .......+++.+.++|+|||+++++.
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999998554432                11225688999999999999998754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.62  E-value=8.9e-16  Score=119.94  Aligned_cols=95  Identities=26%  Similarity=0.291  Sum_probs=83.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA  186 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~~  186 (231)
                      ++.+|||+|||+|.++..+++.    +++|+++.+++.++++        +++++.+|+.+. .+.++||+|++..+++|
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            3789999999999999999876    9999999999999886        378999998873 44568999999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++  ...+++++.++|+|||.+++.+...
T Consensus       115 ~~~--~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          115 VDD--PERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             SSC--HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccC--HHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            953  4689999999999999999987655

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.62  E-value=3.3e-16  Score=124.50  Aligned_cols=108  Identities=16%  Similarity=0.114  Sum_probs=89.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-------CCcee
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~fD  176 (231)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++++++.|++++...+..++++++.+|..+..+       .++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            3457999999999999999987   3679999999999999999999888777789999999987322       46899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      +|++...     ......+++.+.++|+|||+|++.+....+.
T Consensus       139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~  176 (242)
T 3r3h_A          139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDGK  176 (242)
T ss_dssp             EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSSC
T ss_pred             EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCCc
Confidence            9997654     2344678999999999999999876554443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=2.8e-15  Score=119.45  Aligned_cols=104  Identities=18%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+..    ..++||+|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            5689999999999999999984   67999999999999999999988777778999999987721    1348999997


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ...     ......+++.+.++|+|||+|++.+...
T Consensus       143 d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          143 DAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             CSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             CCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            553     2344678999999999999998866543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.62  E-value=1.4e-15  Score=119.25  Aligned_cols=101  Identities=13%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             CcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCC---CCCCceeEEEeCC
Q 026903          110 GRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW---CPTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~---~~~~~fD~i~~~~  182 (231)
                      .+|||+|||+|..+..+++   ++.+|+++|+++++++.|++++...+.. ++++++.+|..+.   .+.++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            4999999999999999987   3679999999999999999999888777 7899999998773   2257899999765


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...     ....+++.+.++|+|||+|++....
T Consensus       138 ~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          138 SPM-----DLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             CTT-----THHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             cHH-----HHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            432     3456899999999999999885443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.62  E-value=9e-16  Score=120.57  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=83.2

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCC-
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCP-  171 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~-  171 (231)
                      ...+..++.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++.      ++++++++|+.+  +.+ 
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  108 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA------PHADVYEWNGKGELPAGL  108 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCCTTC
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC------CCceEEEcchhhccCCcC
Confidence            44455555544456789999999999999999998889999999999999999882      368999999965  334 


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      .++||+|++..        +...+++++.++|||||+|+
T Consensus       109 ~~~fD~v~~~~--------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          109 GAPFGLIVSRR--------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CCCEEEEEEES--------CCSGGGGGHHHHEEEEEEEE
T ss_pred             CCCEEEEEeCC--------CHHHHHHHHHHHcCCCcEEE
Confidence            67999999862        12356889999999999998

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.61  E-value=4.3e-15  Score=125.01  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      ..+|||||||+|.++..+++  ++.+++++|+ +.+++.+++.       ++++|+.+|++++.+..  |+|++..++|+
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~~--D~v~~~~vlh~  273 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPKG--DAIFIKWICHD  273 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCGGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCCC--CEEEEechhhc
Confidence            47999999999999999988  6779999999 8888766532       47999999999866543  99999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      ++++...++|++++++|+|||+|++.++..+..
T Consensus       274 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  306 (368)
T 3reo_A          274 WSDEHCLKLLKNCYAALPDHGKVIVAEYILPPS  306 (368)
T ss_dssp             BCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            998888899999999999999999999876543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=2.4e-15  Score=116.97  Aligned_cols=109  Identities=21%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CC
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TE  173 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~  173 (231)
                      ..++.... .++.+|||+|||+|..+..+++.+   .+|+++|+++.+++.++++....+. .+++++.+|+....+ .+
T Consensus        67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCCCC
Confidence            34444433 355799999999999999998843   7999999999999999998765443 359999999876444 56


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +||+|++..+++|++        +.+.++|+|||++++.....
T Consensus       146 ~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSS
T ss_pred             CeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCC
Confidence            899999999999985        36889999999998876543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=126.02  Aligned_cols=103  Identities=22%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++++|||||||+|.+++.+++.|+ +|+++|.|+ +++.|++++..+++.++|+++++++.+...+++||+|++...-.
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~  160 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY  160 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence            4678999999999999999999887 899999986 78999999988888889999999999966667899999965544


Q ss_pred             ccCh-HHHHHHHHHHHhhcCCCcEEE
Q 026903          186 AIEP-EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      .+.. .....++....+.|+|||.++
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccchhhhHHHHHHhhCCCCceEC
Confidence            4332 356788888899999999876

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.61  E-value=1.5e-15  Score=120.46  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             CCCcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-C---CCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-P---TELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|..+..++  .++.+|+++|+++.+++.++++....+.. +++++++|+.+.. .   .++||+|++.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence            45799999999999999998  57789999999999999999988766543 5999999988743 1   4689999987


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+      .....+++.+.++|+|||++++..
T Consensus       149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          149 AV------ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             CC------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cc------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            63      234678999999999999998753

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=2.9e-15  Score=113.10  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=85.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+. ++++++.+|+.+..+.++||+|++..+   
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~i~~~~~---  109 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKLEFNKAFIGGT---  109 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGCCCSEEEECSC---
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCCCCcEEEECCc---
Confidence            3557999999999999999999878999999999999999999877654 469999999988655578999999887   


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                         .....+++.+.++  |||.+++....
T Consensus       110 ---~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A          110 ---KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             ---SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             ---ccHHHHHHHHhhC--CCCEEEEEecc
Confidence               2335678888888  99999987754

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.61  E-value=3.5e-15  Score=116.03  Aligned_cols=100  Identities=23%  Similarity=0.200  Sum_probs=77.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.+.+.....   .++.++.+|+.++    ...++||+|++.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            5579999999999999988873  358999999999887666554433   3688999998773    224789999987


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..    .+.....+++++.++|||||+|++...
T Consensus       134 ~~----~~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          134 IA----QKNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             CC----STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cc----ChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            31    123445668999999999999988753

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.61  E-value=1e-14  Score=114.78  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|.++..+++. + .+|+++|+++.+++.++++....   +++.++.+|+.+    ....+.||+|+  
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~--  148 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIY--  148 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEE--
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEE--
Confidence            4579999999999999999884 3 69999999999999999987654   579999999987    33336899999  


Q ss_pred             CcccccC-hHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          182 TFFCAIE-PEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       182 ~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                         ++++ +.....+++++.++|+|||++++.
T Consensus       149 ---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          149 ---EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence               3332 344567899999999999999887

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.60  E-value=3.4e-15  Score=129.48  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=89.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++ +++.|++++..+++.++++++.+|+.+...+++||+|++..+++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            3568999999999999999988654 999999998 89999999888777778999999999854446899999988878


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      |+..+.....+..+.++|+|||++++
T Consensus       236 ~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          236 MLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            87666666778889999999999874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.60  E-value=6.9e-15  Score=116.32  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhcc-----CCCCCceEEEEccCCCC----CCCCcee
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFTW----CPTELFD  176 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~-----~~~~~~i~~~~~d~~~~----~~~~~fD  176 (231)
                      ++.+|||||||+|.++..+++  ++.+|+|+|+++.+++.|++++..     .....++.++++|+.+.    ++.++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            346999999999999999998  467999999999999999887542     11225799999999872    4577999


Q ss_pred             EEEeCCcccccChH-H-----HHHHHHHHHhhcCCCcEEEEEE
Q 026903          177 LIFDYTFFCAIEPE-M-----RAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       177 ~i~~~~~~~~~~~~-~-----~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .|++...-.+.... .     ...+++.+.++|+|||.|++.+
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence            99865443222100 0     1478999999999999998865

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.60  E-value=3.9e-15  Score=124.13  Aligned_cols=117  Identities=19%  Similarity=0.159  Sum_probs=94.0

Q ss_pred             HHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC
Q 026903           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (231)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  172 (231)
                      .....++... ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++....+.  .+.++.+|+.+.. .
T Consensus       183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~-~  259 (343)
T 2pjd_A          183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV-K  259 (343)
T ss_dssp             HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC-C
T ss_pred             HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc-c
Confidence            3444455544 3345799999999999999998844  5899999999999999999876653  3677899988754 5


Q ss_pred             CceeEEEeCCccccc---ChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++||+|+++.++++.   ..+....+++++.++|+|||.++++...
T Consensus       260 ~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          260 GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            689999999998762   3466789999999999999999987653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.60  E-value=7.8e-15  Score=123.26  Aligned_cols=101  Identities=21%  Similarity=0.264  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      ..+|||||||+|..+..+++  ++.+++++|+ +.+++.+++.       ++++|+.+|++++.+..  |+|++..++|+
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~--D~v~~~~vlh~  271 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPSG--DTILMKWILHD  271 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCCC--CEEEehHHhcc
Confidence            47999999999999999988  6779999999 8887766531       47999999999866543  99999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      +++++..++|++++++|+|||+|++.++..+..
T Consensus       272 ~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~  304 (364)
T 3p9c_A          272 WSDQHCATLLKNCYDALPAHGKVVLVQCILPVN  304 (364)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSS
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            998888999999999999999999998866543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.59  E-value=1.2e-14  Score=113.98  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=81.8

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++....   ++++++.+|+.+.    ...++||+|++
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4579999999999999999873   469999999999999999988654   4799999999882    22458999997


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ...    .+.....+++++.++|+|||.+++. +..
T Consensus       150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~  180 (227)
T 1g8a_A          150 DVA----QPTQAKILIDNAEVYLKRGGYGMIA-VKS  180 (227)
T ss_dssp             CCC----STTHHHHHHHHHHHHEEEEEEEEEE-EEG
T ss_pred             CCC----CHhHHHHHHHHHHHhcCCCCEEEEE-Eec
Confidence            654    2234455699999999999999887 443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.59  E-value=1.7e-16  Score=123.08  Aligned_cols=107  Identities=20%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-----CceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-----ELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~fD~i~  179 (231)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.++++....+.  +++++++|+.++.+.     ++||+|+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i~  106 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAERGRPWHAIV  106 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhccCcccEEE
Confidence            45689999999999999999985  56999999999999999998876654  688999999885544     7899999


Q ss_pred             eCCcccc------cChHHH------------------HHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCA------IEPEMR------------------AAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~------~~~~~~------------------~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++..+++      ++++..                  ..+++.+.++|+|||++++..++
T Consensus       107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            9765543      222221                  67889999999999996665554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.59  E-value=1.9e-15  Score=120.46  Aligned_cols=103  Identities=15%  Similarity=0.173  Sum_probs=85.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------CCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~f  175 (231)
                      .++.+|||+|||+|+.+..+++  + +.+|+++|+++++++.|++++...++.++++++.+|..+..+        .++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3557999999999999999987  2 679999999999999999998887776789999999877321        4689


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|++....     .....+++.+.++|+|||+|++...
T Consensus       158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecC
Confidence            999976542     3346789999999999999987553

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.59  E-value=5.6e-15  Score=122.47  Aligned_cols=102  Identities=21%  Similarity=0.211  Sum_probs=86.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..+++.|. +|+++|++ .+++.|+++...+++.++++++.+|+.+. .+.++||+|++..+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence            457999999999999999998776 99999999 58999999988877777899999999984 4447899999986654


Q ss_pred             ccC-hHHHHHHHHHHHhhcCCCcEEE
Q 026903          186 AIE-PEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       186 ~~~-~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      ++. ......++..+.++|+|||+++
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          117 FLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            442 2455678999999999999987

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.59  E-value=2.1e-14  Score=116.44  Aligned_cols=105  Identities=10%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeC-ChHHHHHHHHHh-----ccCCCC----CceEEEEccCCCC---C--
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEI-SDIAIKKAEELS-----SSLPNA----KFVSFLKADFFTW---C--  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~-s~~~i~~a~~~~-----~~~~~~----~~i~~~~~d~~~~---~--  170 (231)
                      .++.+|||+|||+|.++..+++.+. +|+++|+ ++.+++.++++.     ...+..    +++++...++.+.   .  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            4567999999999999999998777 9999999 899999999998     433332    3688887776552   1  


Q ss_pred             --CCCceeEEEeCCcccccChHHHHHHHHHHHhhcC---C--CcEEEEEE
Q 026903          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK---P--DGELITLM  213 (231)
Q Consensus       171 --~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~---p--gG~l~~~~  213 (231)
                        +.++||+|++..+++|.  +....+++.+.++|+   |  ||+++++.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             hccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence              35689999998888875  456789999999999   9  99876643

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.58  E-value=3e-15  Score=119.43  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=82.9

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|..+..++.  ++.+|+++|+++++++.++++....++. +++++++|+.+...    .++||+|++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence            457999999999999999886  5679999999999999999998877654 49999999988432    3689999987


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+.      ....+++.+.++|+|||++++..
T Consensus       159 a~~------~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          159 AVA------PLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             SSC------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CcC------CHHHHHHHHHHHcCCCeEEEEEe
Confidence            642      22578999999999999988754

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.58  E-value=4.8e-15  Score=124.46  Aligned_cols=118  Identities=16%  Similarity=0.122  Sum_probs=89.2

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhc-------cCCC-CCceEEEEc
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLKA  164 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~-------~~~~-~~~i~~~~~  164 (231)
                      ..+..++.... .++.+|||+|||+|..+..++. .+. +++|||+++.+++.|+++..       ..++ ..+++|+++
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            44566666553 4568999999999999999986 455 69999999999999987542       2222 257999999


Q ss_pred             cCCCCC-CC--CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          165 DFFTWC-PT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       165 d~~~~~-~~--~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+.+.. ..  ..||+|+++.+++  . ++....|.++.+.|||||+|++.+.-.
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             cccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCCCcEEEEeeccc
Confidence            999932 22  3699999987653  2 455677889999999999999875433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.58  E-value=2.1e-14  Score=112.96  Aligned_cols=115  Identities=17%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~  179 (231)
                      .++.+|||+|||+|..+..+++   +..+|+++|+++.+++...+.....   .++.++.+|+..+.    ..+.||+|+
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEEE
Confidence            3568999999999999999887   3559999999998875544433332   36999999998732    235899999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCCCCC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~  228 (231)
                      +....    +.....++..+.+.|||||+|++...+...+.+-+|-.|.
T Consensus       152 ~d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~  196 (232)
T 3id6_C          152 VDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIY  196 (232)
T ss_dssp             ECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSST
T ss_pred             ecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHH
Confidence            87554    2333445556667999999999987766544455565554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.58  E-value=1.3e-14  Score=114.48  Aligned_cols=101  Identities=19%  Similarity=0.113  Sum_probs=83.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|+++....+.. +++++.+|.....+. .+||+|++..++
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDVIIVTAGA  168 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCCCCccEEEECCcH
Confidence            455799999999999999999855 79999999999999999988766543 499999998544433 359999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++++.        .+.+.|+|||++++..-..
T Consensus       169 ~~~~~--------~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          169 PKIPE--------PLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             SSCCH--------HHHHTEEEEEEEEEEECSS
T ss_pred             HHHHH--------HHHHhcCCCcEEEEEEecC
Confidence            88853        5788999999998876543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.57  E-value=9.7e-15  Score=123.01  Aligned_cols=101  Identities=18%  Similarity=0.259  Sum_probs=86.1

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +..+|||+|||+|.++..+++  ++.+++++|+ +.+++.+++.       ++++++.+|+.+..+.  ||+|++..++|
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~v~~~~~lh  278 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFASVPQ--GDAMILKAVCH  278 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC--EEEEEEESSGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccCCCC--CCEEEEecccc
Confidence            347999999999999999988  4568999999 8888766541       3699999999885543  99999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      |++++...++|+++.++|+|||+|++.++....
T Consensus       279 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  311 (372)
T 1fp1_D          279 NWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE  311 (372)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            998887789999999999999999998875543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.57  E-value=5.6e-15  Score=122.48  Aligned_cols=107  Identities=15%  Similarity=0.052  Sum_probs=87.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCCC-----CCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCP-----TELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-----~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.|++++..+++.+ +++++++|+.+..+     ..+||+|++.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            45799999999999999999988899999999999999999988766554 59999999988432     4689999986


Q ss_pred             CcccccC--------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          182 TFFCAIE--------PEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       182 ~~~~~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .......        .+....+++.+.++|+|||++++...
T Consensus       233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            5422211        24567899999999999999766553

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.57  E-value=5.6e-15  Score=116.46  Aligned_cols=102  Identities=20%  Similarity=0.263  Sum_probs=86.2

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~  181 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+    .++||+|++.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            5679999999999999999883  679999999999999999998877666679999999988321    4689999986


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....     ....+++.+.++|+|||+|++.++
T Consensus       134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             GGGS-----CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             CCHH-----HHHHHHHHHHHHcCCCeEEEEEcC
Confidence            6543     346789999999999999988654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.57  E-value=6.2e-15  Score=114.36  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|..+.  ...+ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            4579999999999999999884   6799999999999999999887665556799999998763  2345 99999764


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..     .....+++.+.++|+|||+|++.+.
T Consensus       135 ~~-----~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          135 DV-----FNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             TT-----SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             Ch-----hhhHHHHHHHHHhcCCCeEEEEECc
Confidence            32     3346789999999999999987554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.57  E-value=5.5e-15  Score=117.94  Aligned_cols=110  Identities=19%  Similarity=0.088  Sum_probs=90.1

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...++.... .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++...+..++++++.+|+.+..+.+
T Consensus        82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (255)
T 3mb5_A           82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE  161 (255)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred             HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence            344444443 45689999999999999999885   67999999999999999999877766667999999999987778


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +||+|++...       +...+++.+.++|+|||++++...
T Consensus       162 ~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          162 NVDHVILDLP-------QPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             SEEEEEECSS-------CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CcCEEEECCC-------CHHHHHHHHHHHcCCCCEEEEEEC
Confidence            8999997322       224578999999999999988764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.57  E-value=1e-14  Score=120.29  Aligned_cols=111  Identities=22%  Similarity=0.149  Sum_probs=89.1

Q ss_pred             HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CC
Q 026903           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CP  171 (231)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~  171 (231)
                      ....++.... .++.+|||+|||+|.++..+++.+   .+|+++|+++++++.|+++....+.. +++++.+|+.+. ..
T Consensus        63 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~  141 (317)
T 1dl5_A           63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE  141 (317)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG
T ss_pred             HHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcccc
Confidence            3444554443 356899999999999999998843   46999999999999999998776554 499999999884 33


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .++||+|++..+++|++        +.+.++|||||++++..-+.
T Consensus       142 ~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          142 FSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             GCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBG
T ss_pred             CCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCC
Confidence            56899999999999986        45788999999998875433

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.56  E-value=2.9e-15  Score=132.76  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=89.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~~~~  184 (231)
                      .+.+|||||||.|.++..|++.|+.|+|||.++.+|+.|+.+..+.+. .+++|.++++++.   ..+++||+|+|..++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            357999999999999999999999999999999999999998876542 2599999999884   456789999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+++......+..+.+.|+++|..++....
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~  175 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAVILELA  175 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred             hcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence            9997665455566778888888887776643

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.56  E-value=4.4e-15  Score=117.60  Aligned_cols=102  Identities=19%  Similarity=0.108  Sum_probs=84.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-------------
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------------  171 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------------  171 (231)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+             
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            5689999999999999999873   679999999999999999998777666679999999876211             


Q ss_pred             ----C-CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          172 ----T-ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       172 ----~-~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                          . ++||+|++.....     ....+++.+.++|+|||++++...
T Consensus       140 ~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             TTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             cccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEcc
Confidence                2 6899999875533     345789999999999999988653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.56  E-value=1.9e-14  Score=116.93  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce---eEEEeCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF---DLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f---D~i~~~~~  183 (231)
                      ++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++...+++.++++|+++|+.+..+ ++|   |+|+++..
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cccCCCCEEEEcCC
Confidence            4579999999999999999885 789999999999999999999888776679999999998554 478   99999743


Q ss_pred             cc-----------ccChHH------HHHHHHHHH-hhcCCCcEEEEE
Q 026903          184 FC-----------AIEPEM------RAAWAQKIK-DFLKPDGELITL  212 (231)
Q Consensus       184 ~~-----------~~~~~~------~~~~l~~~~-~~L~pgG~l~~~  212 (231)
                      +.           |-+...      ...+++++. +.|+|||.|++.
T Consensus       202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            32           211111      126889999 999999998763

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.56  E-value=1.3e-14  Score=113.78  Aligned_cols=102  Identities=21%  Similarity=0.162  Sum_probs=83.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC-C--CeEEEEeCChHHHHHHHHHhccCCC----CCceEEEEccCCCCC-CCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTWC-PTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~iD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~~-~~~~fD~i  178 (231)
                      .++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.++++....+.    .++++++.+|+.... ..++||+|
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  155 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  155 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence            45689999999999999999873 2  5999999999999999998765432    246999999988743 35689999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++...++++.        +.+.++|||||+|++...+.
T Consensus       156 ~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          156 HVGAAAPVVP--------QALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             EECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred             EECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence            9998887763        57889999999998876543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.56  E-value=4e-14  Score=110.60  Aligned_cols=105  Identities=10%  Similarity=-0.048  Sum_probs=88.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~i~~~~  182 (231)
                      ..++.+|||+|||+|..+..+++.+  .+|+++|+++.+++.|++++..+++.++++++.+|..+..+.+ .||+|+...
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            3456799999999999999999865  4899999999999999999999988888999999998866544 699988643


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .    ..+....++....+.|+++|+|++...
T Consensus        93 ~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           93 M----GGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             E----CHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             C----ChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            3    234456789999999999999988554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.55  E-value=9e-15  Score=114.70  Aligned_cols=102  Identities=25%  Similarity=0.288  Sum_probs=83.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC-------CeEEEEeCChHHHHHHHHHhccCCC----CCceEEEEccCCCC-----
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE-------RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTW-----  169 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~-------~~v~~iD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~-----  169 (231)
                      ..++.+|||+|||+|..+..+++..       .+|+++|+++.+++.|+++....+.    ..+++++.+|+.+.     
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            3456899999999999999998743       4999999999999999998765432    34799999999884     


Q ss_pred             CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...++||+|++...++++        ++.+.++|+|||++++...+
T Consensus       158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence            334689999999988876        36788999999999886543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.55  E-value=3.6e-15  Score=117.19  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=76.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhc--CCCCeEEEEeCC-hHHHHHH---HHHhccCCCCCceEEEEccCCCCCC--CCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEIS-DIAIKKA---EELSSSLPNAKFVSFLKADFFTWCP--TELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s-~~~i~~a---~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~  177 (231)
                      ..++.+|||||||+|.++..++  .++.+|+|+|+| +.+++.|   +++....+. .++.|+.+|+.+...  .+.+|.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~  100 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADS  100 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEE
Confidence            4566899999999999999998  467799999999 6666665   766655543 369999999988621  145666


Q ss_pred             EEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEE
Q 026903          178 IFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       178 i~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      |+++..+.+...   .....+++++.++|||||++++
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            665443322100   0124689999999999999988

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.55  E-value=6.4e-15  Score=116.65  Aligned_cols=103  Identities=13%  Similarity=0.154  Sum_probs=85.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--------CCCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~f  175 (231)
                      .++.+|||+|||+|..+..+++  + +.+++++|+++.+++.|++++...+..++++++.+|..+..        ..++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3557999999999999999987  2 67999999999999999999988777678999999987732        14689


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|++...     ......+++.+.++|+|||++++...
T Consensus       149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99997643     23456789999999999999987553

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.55  E-value=6.2e-14  Score=119.48  Aligned_cols=115  Identities=22%  Similarity=0.138  Sum_probs=87.9

Q ss_pred             HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHH-------HHHhccCCCC-CceEEEEc
Q 026903           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKA-------EELSSSLPNA-KFVSFLKA  164 (231)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a-------~~~~~~~~~~-~~i~~~~~  164 (231)
                      ..+..++..... ++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|       ++++...++. .+++++.+
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            445566665543 5589999999999999999983 3 4899999999999998       8877666542 57999987


Q ss_pred             cCCC-C--C--CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          165 DFFT-W--C--PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       165 d~~~-~--~--~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |... .  +  ...+||+|+++.++. .  ++...+|+++.+.|||||+|++..
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CccccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCCCeEEEEee
Confidence            6543 1  1  236899999876652 2  456678899999999999998863

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.55  E-value=1.7e-14  Score=115.50  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=85.8

Q ss_pred             CcEEEecCCC--chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----C--CCcee-
Q 026903          110 GRALVPGCGT--GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----P--TELFD-  176 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~--~~~fD-  176 (231)
                      ..|||+|||.  +.++..+++   ++.+|+++|.|+.+++.|++++...+ ..+++|+++|+.++.     +  ...|| 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCc
Confidence            6999999997  444444433   67899999999999999999886542 246999999998841     1  23455 


Q ss_pred             ----EEEeCCcccccChHH-HHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          177 ----LIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       177 ----~i~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                          .|+++.++||+++.+ ...+++++.+.|+|||+|++.++..+
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence                588999999998765 47899999999999999999988765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.55  E-value=8.2e-15  Score=115.04  Aligned_cols=104  Identities=20%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----C---Ccee
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----T---ELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~---~~fD  176 (231)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+    .   ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            35689999999999999999983   679999999999999999998877766789999999876321    1   6899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|++....     .....+++.+.++|+|||++++....
T Consensus       148 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          148 VAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            99986542     34467899999999999999886543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.54  E-value=1.1e-14  Score=117.84  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=84.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++.... + .++++++.+|+.+..+.++||+|++  
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~fD~Vi~--  185 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-IGNVRTSRSDIADFISDQMYDAVIA--  185 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-CTTEEEECSCTTTCCCSCCEEEEEE--
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECchhccCcCCCccEEEE--
Confidence            34579999999999999999874   679999999999999999998765 4 3479999999999766778999997  


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                         +++  +...+++.+.++|+|||++++.+..
T Consensus       186 ---~~~--~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          186 ---DIP--DPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             ---CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ---cCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence               232  2246899999999999999987754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.54  E-value=1.2e-14  Score=117.23  Aligned_cols=107  Identities=14%  Similarity=-0.035  Sum_probs=91.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.++..+++.| .+|+++|+++.+++.+++|+..+++.++++++++|..+....+.||.|+.....
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence            4567899999999999999999876 499999999999999999999999888999999999998777899999865332


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      .      ...++..+.++|++||+|.+.++..+.
T Consensus       203 ~------~~~~l~~a~~~lk~gG~ih~~~~~~e~  230 (278)
T 3k6r_A          203 R------THEFIPKALSIAKDGAIIHYHNTVPEK  230 (278)
T ss_dssp             S------GGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             c------HHHHHHHHHHHcCCCCEEEEEeeeccc
Confidence            1      134678888999999999888776543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.54  E-value=1.4e-14  Score=121.05  Aligned_cols=101  Identities=14%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +..+|||+|||+|.++..+++  ++.+++++|+ +.+++.+++.       ++++|+.+|+.+..+  .||+|++..++|
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p--~~D~v~~~~~lh  257 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTSIP--NADAVLLKYILH  257 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCCCC--CccEEEeehhhc
Confidence            347999999999999999987  5679999999 9988877641       359999999988554  399999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCC---CcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKP---DGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~  218 (231)
                      |++++...++++++.++|+|   ||+|++.++....
T Consensus       258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~  293 (352)
T 1fp2_A          258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK  293 (352)
T ss_dssp             GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence            99888778999999999999   9999998876543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.54  E-value=7.6e-14  Score=109.21  Aligned_cols=115  Identities=12%  Similarity=-0.018  Sum_probs=93.0

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  172 (231)
                      ...++.+.. ...++.+|||+|||+|.++..+++.+.  +|+++|+++.+++.|++++..+++.++++++.+|..+...+
T Consensus         9 s~RL~~i~~-~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A            9 SKRLQKVAN-YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             CHHHHHHHT-TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             HHHHHHHHH-hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence            455555444 344568999999999999999999663  89999999999999999999998888999999999996554


Q ss_pred             C-ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          173 E-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 ~-~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      + .||+|+....    ..+....++....+.|+++|+|++...
T Consensus        88 ~~~~D~IviaGm----Gg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           88 ADNIDTITICGM----GGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             GGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ccccCEEEEeCC----chHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            4 7999885433    234556788888999999999988764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.54  E-value=3.2e-14  Score=116.69  Aligned_cols=108  Identities=16%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhcc---CCCCCceEEEEccCCCCC---CCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTWC---PTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~~~~~---~~~~fD~i  178 (231)
                      .++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++..   ....++++++.+|+.+..   +.++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            34579999999999999999984  45999999999999999997631   112357999999998832   46789999


Q ss_pred             EeCCcccccChHHH--HHHHHHHHhhcCCCcEEEEEEc
Q 026903          179 FDYTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       179 ~~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ++....++.+....  ..+++.+.++|+|||++++..-
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99766544332222  5789999999999999988643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.54  E-value=8.2e-15  Score=115.61  Aligned_cols=105  Identities=17%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CC--CceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PT--ELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~--~~fD~  177 (231)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..     ..  ++||+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            4579999999999999999983   56999999999999999998877666567999999976521     12  68999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |++....     .....+++.+.++|+|||+|++.+....
T Consensus       152 V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          152 IFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             EEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            9976542     3456789999999999999988665443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.54  E-value=2.8e-15  Score=128.03  Aligned_cols=111  Identities=18%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceE-EEEccCCC-CCCCCc
Q 026903           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFT-WCPTEL  174 (231)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~  174 (231)
                      ...++..... ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.    ...... |...+... +.+.++
T Consensus        96 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           96 ARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKG----IRVRTDFFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTT----CCEECSCCSHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcC----CCcceeeechhhHhhcccCCCC
Confidence            3444444443 4579999999999999999999999999999999999998762    111111 11222222 233578


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ||+|++..+++|++  +...+++++.++|||||++++...
T Consensus       172 fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          172 ANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99999999999995  567899999999999999988653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.54  E-value=4.1e-14  Score=111.50  Aligned_cols=101  Identities=18%  Similarity=0.221  Sum_probs=81.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+.++....   .+++++.+|+.+..    ..++||+|++
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            4579999999999999999873   469999999999887777766554   46999999998832    3568999998


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...    .++....++.++.++|+|||++++....
T Consensus       154 ~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          154 DVA----QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             CCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cCC----CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            544    3344466788999999999999986554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.53  E-value=7.9e-14  Score=109.98  Aligned_cols=115  Identities=11%  Similarity=0.009  Sum_probs=92.6

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  172 (231)
                      ...++.+... ..++.+|||+|||+|.++..+++.+.  +|+++|+++.+++.|++++..+++.++++++.+|..+...+
T Consensus         9 s~RL~~i~~~-v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A            9 SKRLEKVASY-ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             CHHHHHHHTT-CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             hHHHHHHHHh-CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc
Confidence            4455554443 34568999999999999999999653  89999999999999999999988888899999999996654


Q ss_pred             C-ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          173 E-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 ~-~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      + .||+|++...    ..+....++....+.|+++|+|++...
T Consensus        88 ~~~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           88 KDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             GGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cccccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            4 5999886432    334556788889999999999988653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.53  E-value=1.5e-14  Score=113.64  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=83.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcC-CC-------CeEEEEeCChHHHHHHHHHhccCCC----CCceEEEEccCCCCCCC-C
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS-PE-------RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTWCPT-E  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~-~~-------~~v~~iD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~-~  173 (231)
                      .++.+|||+|||+|..+..+++ .+       .+|+++|+++.+++.++++....+.    ..+++++.+|..+..+. +
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA  162 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCC
Confidence            4568999999999999999987 33       4899999999999999988754320    13699999999885544 6


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +||+|++...+++++        +.+.+.|||||+|++....+
T Consensus       163 ~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          163 PYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGPD  197 (227)
T ss_dssp             SEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESCS
T ss_pred             CccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEecC
Confidence            899999999998874        56889999999998877653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=3.6e-14  Score=114.56  Aligned_cols=105  Identities=16%  Similarity=0.013  Sum_probs=87.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|++++..+++. ++.++.+|+.+....+.||+|++...
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECCc
Confidence            3456899999999999999999853  49999999999999999999877654 58899999998722468999998765


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .      ....++..+.+.|+|||++++.++...
T Consensus       196 ~------~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          196 H------KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             S------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             c------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            4      224578899999999999999988763

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.52  E-value=4.1e-14  Score=119.64  Aligned_cols=111  Identities=11%  Similarity=-0.034  Sum_probs=90.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCCC-----CCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCP-----TELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-----~~~fD~i~  179 (231)
                      .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++..+++.+ +++|+++|+.+..+     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            4568999999999999999998776 89999999999999999998887665 79999999987322     35899999


Q ss_pred             eCCccc-----ccCh--HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          180 DYTFFC-----AIEP--EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       180 ~~~~~~-----~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +.....     +...  ....++++.+.++|+|||+|++.+.+..
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            865442     2221  3456788889999999999999886654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.52  E-value=9.4e-14  Score=111.63  Aligned_cols=95  Identities=29%  Similarity=0.322  Sum_probs=80.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~  183 (231)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|+++.      .++.+..+|+.+ +.+.++||+|++..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            45689999999999999999884  779999999999999999875      357899999987 445678999998665


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..         +++++.++|+|||.+++.+...
T Consensus       158 ~~---------~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          158 PC---------KAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CC---------CHHHHHHHEEEEEEEEEEEECT
T ss_pred             hh---------hHHHHHHhcCCCcEEEEEEcCH
Confidence            32         3788999999999999887654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.52  E-value=4e-14  Score=112.30  Aligned_cols=110  Identities=18%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCcee
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFD  176 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD  176 (231)
                      ..++.... .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|+++....+..+++++..+|+.+.. +...||
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred             HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence            33444433 3568999999999999999988777999999999999999999877766568999999999966 667899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|++...       +...+++.+.++|+|||.+++....
T Consensus       161 ~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          161 AAFVDVR-------EPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             EEEECSS-------CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             EEEECCc-------CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9997322       2235789999999999999887653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.51  E-value=5.7e-14  Score=119.29  Aligned_cols=118  Identities=19%  Similarity=0.055  Sum_probs=93.6

Q ss_pred             HHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----C
Q 026903           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----T  172 (231)
Q Consensus        99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~  172 (231)
                      ..++.....++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|++++..+++.++++|+.+|+.+..+     .
T Consensus       208 ~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~  287 (396)
T 2as0_A          208 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG  287 (396)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhC
Confidence            344444333668999999999999999999765 9999999999999999999887765589999999988432     4


Q ss_pred             CceeEEEeCCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 ELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+||+|++.......+.       .....++..+.++|+|||.|++.+.+.
T Consensus       288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            68999998654332221       455788999999999999998887654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.51  E-value=1.5e-14  Score=115.47  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=73.2

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCC---CceeEE
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPT---ELFDLI  178 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~---~~fD~i  178 (231)
                      ++.+|||+|||+|.++..+++  ++.+|+|+|+++.+++.|+++....++.++++++++|+.+    ..+.   ++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            457999999999999998887  3679999999999999999999877766679999999655    3332   589999


Q ss_pred             EeCCcccccCh-------------HHHHHHHHHHHhhcCCCcEEE
Q 026903          179 FDYTFFCAIEP-------------EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       179 ~~~~~~~~~~~-------------~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +++..+++...             +....++..+.++|||||.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~  189 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE  189 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence            99876654430             011234555566666666543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=4.8e-14  Score=118.00  Aligned_cols=109  Identities=19%  Similarity=0.140  Sum_probs=89.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..++..   ..+++|+|+++.+++.|++++...++. +++|+++|+.+. .+...||+|+++.
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccccCCCCEEEECC
Confidence            35579999999999999999884   379999999999999999999888766 799999999994 3445789999987


Q ss_pred             cccccCh------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 FFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+.....      .....+++.+.++|+|||.+++.+..+
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            6543211      233788999999999999999987654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.51  E-value=7.2e-14  Score=111.07  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccC--------CCCCceEEEEccCCCC----CCCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--------PNAKFVSFLKADFFTW----CPTE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~--------~~~~~i~~~~~d~~~~----~~~~  173 (231)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.+++++...        +. .++.++.+|+.+.    ++.+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence            4579999999999999999984  458999999999999998876543        33 4799999999872    4467


Q ss_pred             ceeEEEeCCcccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+|.|+....-.+....      ....+++.+.++|+|||+|++.+
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            89999854322111000      01478999999999999998854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.50  E-value=1.1e-14  Score=113.57  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=75.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHh----ccCCCCCceEEEEccCCCC-CCCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELS----SSLPNAKFVSFLKADFFTW-CPTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~----~~~~~~~~i~~~~~d~~~~-~~~~~fD~i  178 (231)
                      ..++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.+.+..    ...+ .++++|+++|+.+. .+.+. |.|
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-LPNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-CTTEEEEECCSTTCCSCCCE-EEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-CCceEEEecchhhCCCCCCC-CEE
Confidence            345679999999999999999984  679999999999888643322    2222 24799999999994 33344 666


Q ss_pred             EeCCc---c--cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTF---F--CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~---~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +....   .  +|++  +...+++++.++|||||.+++..
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEe
Confidence            63222   2  1332  22678999999999999998844

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.49  E-value=1.1e-13  Score=114.92  Aligned_cols=102  Identities=10%  Similarity=-0.047  Sum_probs=87.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||+|.++.. ++.+.+|+++|+|+.+++.+++++..+++.++++++++|+.+..  ..||+|++..... 
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~-  269 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF-  269 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT-
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh-
Confidence            3668999999999999999 88666999999999999999999988877668999999999866  7899999754322 


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                           ...+++.+.++|+|||.+++.++...
T Consensus       270 -----~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          270 -----AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             -----GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             -----HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence                 13678999999999999999887764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.49  E-value=6e-14  Score=111.93  Aligned_cols=110  Identities=18%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCCCC-CC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFTW-CP  171 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~-~~  171 (231)
                      ...++.... .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++... + .+++++..+|+.+. .+
T Consensus        85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCC
Confidence            344444443 35689999999999999999884   679999999999999999987654 3 35799999999886 66


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .++||+|++.     ++  +...+++.+.++|+|||.+++....
T Consensus       164 ~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          164 EAAYDGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             TTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCcCEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            6789999973     22  2236799999999999999987754

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.49  E-value=3.4e-13  Score=104.08  Aligned_cols=100  Identities=13%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++....+.  +++++++|+.+..  .+||+|+++..++
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p~~  123 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPPFG  123 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCCCS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCCCc
Confidence            4568999999999999999998765 799999999999999999877654  6999999998853  4899999998887


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +........+++.+.+.+  |+ +++.+
T Consensus       124 ~~~~~~~~~~l~~~~~~l--~~-~~~~~  148 (207)
T 1wy7_A          124 SQRKHADRPFLLKAFEIS--DV-VYSIH  148 (207)
T ss_dssp             SSSTTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred             cccCCchHHHHHHHHHhc--Cc-EEEEE
Confidence            765444467788888888  44 55554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.49  E-value=2.7e-13  Score=104.18  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=75.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++..      +++++++|+.+..  ++||+|+++..++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~~  121 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPFG  121 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC-
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCch
Confidence            3568999999999999999998765 79999999999999999874      5899999998853  6899999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++......++++++.+.+   |.++++.
T Consensus       122 ~~~~~~~~~~l~~~~~~~---g~~~~~~  146 (200)
T 1ne2_A          122 SVVKHSDRAFIDKAFETS---MWIYSIG  146 (200)
T ss_dssp             ------CHHHHHHHHHHE---EEEEEEE
T ss_pred             hccCchhHHHHHHHHHhc---CcEEEEE
Confidence            886544457889999888   4455544

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=9.9e-14  Score=113.56  Aligned_cols=105  Identities=18%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCCcc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~~~~  184 (231)
                      .+|||||||+|..+..+++  ++.+++++|+++.+++.|++++... ..++++++.+|..+.   .+.++||+|++....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            4999999999999999997  5779999999999999999988643 246899999998873   235689999986543


Q ss_pred             cccChHH--HHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEM--RAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +...+..  ...+++.+.++|+|||++++...+
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            3221111  157899999999999999887653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.49  E-value=8.1e-14  Score=116.72  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             CcHHHHHHHHcCCCCCCcEEEecCC------CchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc
Q 026903           94 PAPIIVHLHQSGALPKGRALVPGCG------TGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA  164 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vLDiGcG------~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~  164 (231)
                      .......++.....++.+|||||||      +|..+..+++   ++.+|+|+|+|+++.      .    ..++++|+++
T Consensus       202 y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~----~~~rI~fv~G  271 (419)
T 3sso_A          202 FTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V----DELRIRTIQG  271 (419)
T ss_dssp             CHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G----CBTTEEEEEC
T ss_pred             HHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h----cCCCcEEEEe
Confidence            3456677777665567899999999      6666666665   567999999999862      1    1257999999


Q ss_pred             cCCCC-CC------CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          165 DFFTW-CP------TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       165 d~~~~-~~------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+.+. +.      .++||+|++... +++  .+..++++++.++|||||++++.+...
T Consensus       272 Da~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          272 DQNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             CTTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             cccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            99983 33      478999998754 443  566789999999999999999988763

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.49  E-value=6.4e-14  Score=113.29  Aligned_cols=109  Identities=17%  Similarity=0.068  Sum_probs=88.1

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ..++.... .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++....+..++++++.+|+.+..+.+.
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  181 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD  181 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence            33444333 34579999999999999999874   569999999999999999998777665679999999998766678


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ||+|++..     +  ....+++.+.++|+|||.|++.+.
T Consensus       182 ~D~V~~~~-----~--~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          182 VDALFLDV-----P--DPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             EEEEEECC-----S--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             cCEEEECC-----c--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99999732     1  223678999999999999988764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.49  E-value=6.4e-14  Score=113.62  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccC--C--------CCCceEEEEccCCCCCC-CCce
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSL--P--------NAKFVSFLKADFFTWCP-TELF  175 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~--~--------~~~~i~~~~~d~~~~~~-~~~f  175 (231)
                      ++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|++++ ..  +        ..++++++.+|..+..+ .++|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence            45799999999999999999864 49999999999999999988 33  2        13679999999876321 5689


Q ss_pred             eEEEeCCcccccChHH--HHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+|++....+.-++..  ...+++.+.++|+|||++++..
T Consensus       154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            9999865533222222  2678999999999999998864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.48  E-value=7.4e-14  Score=116.99  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +..+|||+|||+|.++..+++  ++.+++++|+ +.+++.+++    .   .+++++.+|+.+..+  .||+|++..++|
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---~~v~~~~~d~~~~~~--~~D~v~~~~vlh  262 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N---ENLNFVGGDMFKSIP--SADAVLLKWVLH  262 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C---SSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C---CCcEEEeCccCCCCC--CceEEEEccccc
Confidence            347999999999999999988  4568999999 788766553    1   359999999988544  499999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCC---CcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKP---DGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~  218 (231)
                      |++++...++|+++.++|+|   ||+|++.++....
T Consensus       263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~  298 (358)
T 1zg3_A          263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE  298 (358)
T ss_dssp             GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCC
Confidence            99888778999999999999   9999998876543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.48  E-value=1.3e-13  Score=113.01  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhcc--CCC-CCceEEEEccCCCC--CCCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTW--CPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~--~~~-~~~i~~~~~d~~~~--~~~~~fD~i~  179 (231)
                      .++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++..  .+. .++++++.+|..+.  ...++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            34589999999999999999984  36999999999999999998753  112 35799999998773  2356899999


Q ss_pred             eCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +....+..+..  ....+++.+.++|+|||++++...+
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            86543322211  2357899999999999999886533

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.48  E-value=7.4e-14  Score=118.56  Aligned_cols=111  Identities=19%  Similarity=0.044  Sum_probs=90.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCC-CCceEEEEccCCCCCC-----CCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----TELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d~~~~~~-----~~~fD~i~  179 (231)
                      .++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|++++..+++ .++++|+.+|+.+..+     ..+||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            4668999999999999999999864 999999999999999999988776 5579999999988432     46899999


Q ss_pred             eCCcccccC-------hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          180 DYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       180 ~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +.......+       ......++..+.+.|+|||+|++.+.+..
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            865432111       14567889999999999999999886653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.48  E-value=1.4e-13  Score=114.02  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccC--CC-CCceEEEEccCCCC---CCCCceeEEE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW---CPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~--~~-~~~i~~~~~d~~~~---~~~~~fD~i~  179 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.   .+.++||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            4589999999999999999984  469999999999999999987531  12 25799999998773   2346899999


Q ss_pred             eCCcccccChHH--HHHHHHHHHhhcCCCcEEEEE
Q 026903          180 DYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       180 ~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +.........+.  ...+++.+.++|+|||+|++.
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            865422111121  368899999999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.48  E-value=1.7e-13  Score=111.16  Aligned_cols=107  Identities=20%  Similarity=0.150  Sum_probs=84.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC--C-CCceEEEEccCCCCC--CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|++++....  . .++++++.+|..+..  ..++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            4589999999999999999984  4699999999999999999875431  1 357999999988732  2568999998


Q ss_pred             CCcccccChHHH--HHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....++.+....  ..+++.+.++|+|||++++...
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            654333222222  6899999999999999987643

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.48  E-value=1.1e-13  Score=111.72  Aligned_cols=110  Identities=18%  Similarity=0.119  Sum_probs=86.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----CCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~fD~  177 (231)
                      ..++.+|||+|||+|..+..+++  .+ .+|+++|+++.+++.++++....+.. +++++.+|..+...     .+.||+
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCE
Confidence            44668999999999999999987  45 69999999999999999998877654 79999999887432     568999


Q ss_pred             EEeCCccccc---------Ch-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAI---------EP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~---------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++.......         .+       ....++++.+.++|||||+|++.+.+.
T Consensus       160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            9986332211         01       234688999999999999999877654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.48  E-value=7.1e-14  Score=114.92  Aligned_cols=106  Identities=21%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccC--CC-CCceEEEEccCCCCC--CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...  +. .++++++.+|+.+..  ..++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4579999999999999999984  469999999999999999987643  22 357999999988732  3568999998


Q ss_pred             CCcccccChHHH--HHHHHHHHhhcCCCcEEEEEE
Q 026903          181 YTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       181 ~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ....+.-++...  ..+++.+.++|+|||++++..
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            654322112221  688999999999999998754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.48  E-value=2.9e-13  Score=105.80  Aligned_cols=102  Identities=16%  Similarity=0.079  Sum_probs=86.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .++.+|||+|||.|-++..+. .+..|+++|+++.+++.+++++..++  .+..+..+|.....++++||+|++.-++||
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            456899999999999999988 77799999999999999999987765  468899999999767779999999999999


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ++.+.+...+ ++.+.|+++|+++..
T Consensus       181 LE~q~~~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcCCCEEEEc
Confidence            9765555444 888899999977543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.47  E-value=5.9e-14  Score=109.05  Aligned_cols=88  Identities=14%  Similarity=0.059  Sum_probs=74.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||+|||+|.++..++   .+++++|+++.                ++.++.+|+.+ +.+.++||+|++..++|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR---NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            455899999999999999884   68999999987                25688999988 45567899999999997


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +   .+...+++++.++|+|||.+++.++..
T Consensus       127 ~---~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          127 G---TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             S---SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             c---cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            5   345788999999999999999987654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.47  E-value=9e-14  Score=104.10  Aligned_cols=99  Identities=13%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------CCCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~~~  174 (231)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++ +++.           .+++++.+|+.+.         .+.++
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence            45579999999999999999874   47999999999 6432           3689999999884         55678


Q ss_pred             eeEEEeCCcccccChH---H------HHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPE---M------RAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~---~------~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++..++++....   .      ...+++.+.++|+|||.+++..+...
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            9999998887765432   1      16889999999999999998877543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.47  E-value=1.1e-13  Score=114.18  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=83.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccC--CC-CCceEEEEccCCCCC--CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...  +. .++++++.+|+.+..  ..++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4589999999999999999984  569999999999999999987652  12 357999999987732  3568999998


Q ss_pred             CCcccccChHHH--HHHHHHHHhhcCCCcEEEEEEcc
Q 026903          181 YTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       181 ~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ...-..-+....  ..+++.+.++|+|||++++...+
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            653221111211  68899999999999999886543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.47  E-value=1.4e-13  Score=111.31  Aligned_cols=107  Identities=17%  Similarity=0.131  Sum_probs=83.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccC--CC-CCceEEEEccCCCC--CCCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.+++.|++++...  +. .++++++.+|..+.  ...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4589999999999999999984 4 59999999999999999987431  12 35899999998873  23568999998


Q ss_pred             CCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....+..++.  ....+++.+.++|+|||++++...
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            6554322211  125689999999999999988643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.46  E-value=3.4e-13  Score=114.10  Aligned_cols=118  Identities=12%  Similarity=0.006  Sum_probs=90.1

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCce
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~f  175 (231)
                      ...++.....++.+|||+|||+|.++..+++.|..|+++|+|+.+++.+++++..+++..  .+.++|+.+..  ..+.|
T Consensus       204 ~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~f  281 (393)
T 4dmg_A          204 NRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPF  281 (393)
T ss_dssp             HHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCE
T ss_pred             HHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCC
Confidence            344455444457899999999999999999988889999999999999999988776543  46689988732  13349


Q ss_pred             eEEEeCCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          176 DLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       176 D~i~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+|++......-+.       .....+++.+.++|+|||+|++.+.+..
T Consensus       282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            99998754322111       3446789999999999999987776553

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.46  E-value=1.1e-13  Score=116.98  Aligned_cols=115  Identities=23%  Similarity=0.093  Sum_probs=91.8

Q ss_pred             HHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----CCc
Q 026903          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TEL  174 (231)
Q Consensus       100 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~  174 (231)
                      .++...  ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..++..+ ++|+++|+.+..+     ..+
T Consensus       203 ~~~~~~--~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~  279 (382)
T 1wxx_A          203 LYMERF--RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGER  279 (382)
T ss_dssp             HHGGGC--CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCC
T ss_pred             HHHHhc--CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCC
Confidence            344443  66899999999999999999876699999999999999999998876544 9999999988432     468


Q ss_pred             eeEEEeCCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ||+|++.......+.       .....++..+.++|+|||+|++.+.+..
T Consensus       280 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          280 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             eeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            999998654322211       4557789999999999999999886543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.46  E-value=8.3e-14  Score=112.78  Aligned_cols=107  Identities=12%  Similarity=0.010  Sum_probs=79.2

Q ss_pred             cHHHHHHHHcCCC--CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEE-EEccCCCC-
Q 026903           95 APIIVHLHQSGAL--PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSF-LKADFFTW-  169 (231)
Q Consensus        95 ~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~-~~~d~~~~-  169 (231)
                      ...+...+.....  ++.+|||+|||+|.++..+++.|. +|+|+|+++.+++.+.++.      .++.. ...|+... 
T Consensus        70 ~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~  143 (291)
T 3hp7_A           70 GLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAE  143 (291)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCC
T ss_pred             HHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecc
Confidence            3445666665533  457999999999999999988875 9999999999998854422      13322 23344332 


Q ss_pred             ---CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          170 ---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       170 ---~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                         .+..+||+|++..+|+++     ..++.++.++|+|||.+++.
T Consensus       144 ~~~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          144 PVDFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GGGCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred             hhhCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence               233359999998888776     46799999999999999887

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.46  E-value=1.4e-13  Score=113.37  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=84.8

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhcc--CC-C-CCceEEEEccCCCC--CCCCceeEEE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LP-N-AKFVSFLKADFFTW--CPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~--~~-~-~~~i~~~~~d~~~~--~~~~~fD~i~  179 (231)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++..  .+ . .++++++.+|..+.  ...++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            4579999999999999999984  56999999999999999998753  11 1 35799999999873  2356899999


Q ss_pred             eCCcccc---cChHH--HHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCA---IEPEM--RAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~---~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +....+.   -+...  ...+++.+.++|+|||++++...+
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            9765543   11111  368899999999999999886544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.45  E-value=3.5e-13  Score=106.34  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+|||+|||.|-++..++.  +..+|+++|+++.+++.+++++..++.  +..+...|.....+.++||++++.-++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCcchHHHHHHH
Confidence            3468999999999999999987  456999999999999999999988764  378999999997788899999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +|++.+.+...+ ++.+.|+|+|+++..
T Consensus       209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          209 PCLETQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             HHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence            999766555566 899999999987643

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.45  E-value=4.1e-14  Score=111.91  Aligned_cols=96  Identities=11%  Similarity=0.029  Sum_probs=76.4

Q ss_pred             CCCcEEEecCCCchHHHHhcCC------CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCC-Ccee
Q 026903          108 PKGRALVPGCGTGYDVVAMASP------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPT-ELFD  176 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~-~~fD  176 (231)
                      ++.+|||||||+|..+..+++.      +.+|+++|+++++++.|+.      ..++++++++|+.+.    ... .+||
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD  154 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHP  154 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCC
Confidence            4579999999999999998864      6799999999999887762      125799999999884    122 3799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHh-hcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKD-FLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~~  214 (231)
                      +|++...  |.   ....++.++.+ +|||||+|++.++
T Consensus       155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            9997655  32   34568899997 9999999988653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.45  E-value=2e-13  Score=110.28  Aligned_cols=112  Identities=15%  Similarity=0.136  Sum_probs=87.2

Q ss_pred             HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccC-C-CCCceEEEEccCCCC-
Q 026903           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-P-NAKFVSFLKADFFTW-  169 (231)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~-~-~~~~i~~~~~d~~~~-  169 (231)
                      ....++.... .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++.... + +.++++++.+|+.+. 
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            3444554443 35579999999999999999873   679999999999999999987654 2 345799999999884 


Q ss_pred             CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+.++||+|++..     +  +...+++.+.++|+|||++++....
T Consensus       167 ~~~~~~D~v~~~~-----~--~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          167 LPDGSVDRAVLDM-----L--APWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CCTTCEEEEEEES-----S--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             CCCCceeEEEECC-----c--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4567899999732     1  1135789999999999999887643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.44  E-value=2.6e-13  Score=110.25  Aligned_cols=114  Identities=20%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..++..... ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+..++++++.+|+.+...+ 
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-   92 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-   92 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-
Confidence            3445666665543 45799999999999999999988899999999999999999887655445799999999884332 


Q ss_pred             ceeEEEeCCcccccChHHHHHHHH--------------HH--HhhcCCCcEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQ--------------KI--KDFLKPDGELI  210 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~--------------~~--~~~L~pgG~l~  210 (231)
                      .||+|+++..++..+ +....++.              ++  +.+|+|||.++
T Consensus        93 ~fD~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 FFDTCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCSEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hhcEEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            799999976665432 33333332              22  35899999764

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.44  E-value=2.1e-13  Score=111.34  Aligned_cols=107  Identities=16%  Similarity=0.097  Sum_probs=80.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhcc--CCC-CCceEEEEccCCCCC--CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTWC--PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~--~~~-~~~i~~~~~d~~~~~--~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++..  ... .++++++.+|+.+..  ..++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999984  46999999999999999998743  111 357999999987732  3468999998


Q ss_pred             CCcccccCh-H--HHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEP-E--MRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~-~--~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....++..+ .  ....+++.+.++|+|||++++...
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            543221211 1  126789999999999999988643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.44  E-value=2.9e-13  Score=122.35  Aligned_cols=109  Identities=18%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC--CCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~fD~i~~~~  182 (231)
                      .++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++++..+++. ++++++++|+.+..  ..++||+|++..
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            3578999999999999999998776 6999999999999999999888776 58999999998832  346899999865


Q ss_pred             cccc--------cC-hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCA--------IE-PEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~--------~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ....        +. ......++..+.++|+|||+|++.+-+
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3211        11 146678899999999999999977654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.44  E-value=5.2e-13  Score=102.54  Aligned_cols=98  Identities=13%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC----CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------------
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------------  170 (231)
                      .++.+|||+|||+|.++..+++.    +.+|+|+|+++..         .   .++++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~---~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P---IPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C---CTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C---CCCceEEEccccchhhhhhcccccccc
Confidence            34579999999999999999873    4699999999831         1   136899999998743            


Q ss_pred             --------------CCCceeEEEeCCcccccCh---HH------HHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          171 --------------PTELFDLIFDYTFFCAIEP---EM------RAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       171 --------------~~~~fD~i~~~~~~~~~~~---~~------~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                                    +..+||+|++...+++...   +.      ..++++.+.++|+|||.+++..+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                          4568999999877665311   11      1357899999999999999877654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.44  E-value=5.6e-13  Score=109.79  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=85.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~  181 (231)
                      ..++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.+++++...+.. +++++++|+.+.. ..+.||+|++.
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEe
Confidence            44568999999999999999986   2468999999999999999998776543 5999999998843 35689999984


Q ss_pred             Cc------ccccC-------h-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TF------FCAIE-------P-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~------~~~~~-------~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..      +.+.+       +       .....+++.+.++|||||+|++.+.+.
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            22      32211       1       123689999999999999999877554

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.43  E-value=6e-13  Score=112.08  Aligned_cols=104  Identities=14%  Similarity=0.057  Sum_probs=84.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~  181 (231)
                      .++.+|||+| |+|.++..++..+  .+|+++|+++.+++.|+++....++. +++++.+|+.+..+   .++||+|+++
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence            4568999999 9999999998754  59999999999999999998876654 79999999998433   3589999998


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEE-EEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGEL-ITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l-~~~~~~  215 (231)
                      ..++..   ....+++++.++|+|||.+ ++....
T Consensus       249 ~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          249 PPETLE---AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CCSSHH---HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CCCchH---HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            776543   2478999999999999954 444443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.43  E-value=1.2e-12  Score=100.11  Aligned_cols=108  Identities=13%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             HHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----
Q 026903           98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----  171 (231)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----  171 (231)
                      +.++..+.  ..++.+|||+|||+|.++..+++.+.+|+|+|+++..         .   ..+++++++|+.+...    
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~---~~~v~~~~~D~~~~~~~~~~   80 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------E---IAGVRFIRCDIFKETIFDDI   80 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------C---CTTCEEEECCTTSSSHHHHH
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------c---CCCeEEEEccccCHHHHHHH
Confidence            34444443  2356899999999999999999998899999999741         1   1369999999988421    


Q ss_pred             ----C----CceeEEEeCCcccccC---------hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          172 ----T----ELFDLIFDYTFFCAIE---------PEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       172 ----~----~~fD~i~~~~~~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                          .    ++||+|++........         .+....+++.+.++|||||.|++..|...
T Consensus        81 ~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           81 DRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             HHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence                1    3899999975432111         02235788899999999999999887553

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.43  E-value=3.5e-13  Score=111.89  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=79.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC-C--CeEEEEeCChHHHHHHHHHhccC-------C---CCCceEEEEccCCCC---
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDIAIKKAEELSSSL-------P---NAKFVSFLKADFFTW---  169 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~iD~s~~~i~~a~~~~~~~-------~---~~~~i~~~~~d~~~~---  169 (231)
                      ..++.+|||+|||+|.++..+++. |  .+|+++|+++.+++.|+++....       .   ...+++++.+|+.+.   
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            345689999999999999999884 3  69999999999999999987641       1   125799999999884   


Q ss_pred             CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+.+.||+|++.....+       .+++.+.++|+|||+|++....
T Consensus       183 ~~~~~fD~V~~~~~~~~-------~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          183 IKSLTFDAVALDMLNPH-------VTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             -----EEEEEECSSSTT-------TTHHHHGGGEEEEEEEEEEESS
T ss_pred             cCCCCeeEEEECCCCHH-------HHHHHHHHhcCCCcEEEEEeCC
Confidence            24568999998543221       2689999999999999876643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.42  E-value=3e-13  Score=112.70  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC-------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE-------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~-------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~  180 (231)
                      ++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.++...+.  ++.++++|.....+...||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccccCCccEEEE
Confidence            45799999999999999887622       6899999999999999998765543  57899999988666678999999


Q ss_pred             CCcccccChHHH----------------HHHHHHHHhhcCCCcEEEEEE
Q 026903          181 YTFFCAIEPEMR----------------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       181 ~~~~~~~~~~~~----------------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +..+.+++.+..                ..+++.+.+.|+|||+++++.
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            988776654332                268999999999999988876

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.41  E-value=8.4e-13  Score=111.18  Aligned_cols=106  Identities=16%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~  182 (231)
                      ..++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|++++...++.++++|+++|+.+. .+.++||+|+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            34568999999999999999999776  89999999999999999998887767899999999994 4457899999987


Q ss_pred             cccccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          183 FFCAIE------PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       183 ~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+..-.      .+....+++.+.++|  +|.++++.
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~  329 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT  329 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence            654321      123477889999988  55554444

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.40  E-value=1.9e-13  Score=110.36  Aligned_cols=116  Identities=15%  Similarity=0.035  Sum_probs=80.6

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-cCCCCCceEEE--EccCCCCCCCC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFL--KADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~  173 (231)
                      +..+.+... .++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++... ......++.|+  ++|+.+.. ++
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~  147 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PF  147 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CC
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CC
Confidence            444555433 35679999999999999999988 6899999998 4333222110 00111268999  89988854 57


Q ss_pred             ceeEEEeCCcccccCh---HHH--HHHHHHHHhhcCCCc--EEEEEEccCC
Q 026903          174 LFDLIFDYTFFCAIEP---EMR--AAWAQKIKDFLKPDG--ELITLMFPIS  217 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~---~~~--~~~l~~~~~~L~pgG--~l~~~~~~~~  217 (231)
                      +||+|+|..+ ++...   +..  ..+|+.+.++|+|||  .+++..|.+.
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~  197 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY  197 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence            8999999876 33221   111  147899999999999  9998888743

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.38  E-value=3.9e-12  Score=108.66  Aligned_cols=101  Identities=15%  Similarity=0.028  Sum_probs=81.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...+++.  ++|+.+|+.+..+. .||+|++.....
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~fD~Vv~dPPr~  364 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-GFDTVIVDPPRA  364 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-TCSEEEECCCTT
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-CCCEEEEcCCcc
Confidence            345579999999999999999998889999999999999999998776543  89999999996544 899999865543


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+.    ..+++.+. .|+|+|++++.+-
T Consensus       365 g~~----~~~~~~l~-~l~p~givyvsc~  388 (425)
T 2jjq_A          365 GLH----PRLVKRLN-REKPGVIVYVSCN  388 (425)
T ss_dssp             CSC----HHHHHHHH-HHCCSEEEEEESC
T ss_pred             chH----HHHHHHHH-hcCCCcEEEEECC
Confidence            332    23445444 4899999998753

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.37  E-value=3.7e-13  Score=108.13  Aligned_cols=115  Identities=15%  Similarity=0.104  Sum_probs=80.0

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-cCCCCCceEEE--EccCCCCCCCC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFL--KADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~  173 (231)
                      +..+.+... .++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++... ......++.++  ++|+.+.. ++
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~  139 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VE  139 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CC
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CC
Confidence            455555433 35679999999999999999988 7899999998 4322221100 00011268999  99998854 56


Q ss_pred             ceeEEEeCCcccccCh---HHH--HHHHHHHHhhcCCCc--EEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEP---EMR--AAWAQKIKDFLKPDG--ELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~---~~~--~~~l~~~~~~L~pgG--~l~~~~~~~  216 (231)
                      +||+|+|..+ ++...   +..  ..+|+.+.++|+|||  .+++..|.+
T Consensus       140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~  188 (265)
T 2oxt_A          140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP  188 (265)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred             CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence            8999999876 33221   111  137899999999999  999988774

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.37  E-value=9.4e-13  Score=103.77  Aligned_cols=109  Identities=15%  Similarity=0.039  Sum_probs=72.7

Q ss_pred             HHHHHHHHcCCC--CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCC--CCceEEEE-ccCCCC
Q 026903           96 PIIVHLHQSGAL--PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN--AKFVSFLK-ADFFTW  169 (231)
Q Consensus        96 ~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~-~d~~~~  169 (231)
                      ..+...+.....  ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++......  ..++.+.. .++.. 
T Consensus        23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-  101 (232)
T 3opn_A           23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-  101 (232)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-
Confidence            345566665533  357999999999999999999885 999999999999998775432100  00121222 12211 


Q ss_pred             CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                         ..||.+.+..++.++     ..+++++.++|||||.+++..
T Consensus       102 ---~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          102 ---GRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ---CCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE
T ss_pred             ---CCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE
Confidence               124555444444444     468999999999999998864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.35  E-value=1.9e-12  Score=103.85  Aligned_cols=97  Identities=14%  Similarity=0.044  Sum_probs=78.3

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC--C-CCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--P-NAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~--~-~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .+.+|||+|||+|..+..+++.+.+|+++|+++++++.|++++...  . ..++++++.+|..+..  ++||+|++... 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~-  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE-  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC-
Confidence            4579999999999999988875579999999999999998876431  0 1357999999998865  78999997632 


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                         ++   ..+++.+.++|+|||++++..
T Consensus       149 ---dp---~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          149 ---PD---IHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             ---CC---HHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---Ch---HHHHHHHHHhcCCCcEEEEEc
Confidence               12   238999999999999998754

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.32  E-value=4e-12  Score=104.12  Aligned_cols=114  Identities=12%  Similarity=0.074  Sum_probs=78.1

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeC----ChHHHHHHHHHhccCCCCCceEEEEc-cCCCCCC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEI----SDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWCP  171 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~----s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~~  171 (231)
                      +..+..... .++.+|||+|||+|.++..+++. .+|+++|+    ++..++.+.  ....+ .+++.|+++ |+.+.. 
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~-  145 (305)
T 2p41_A           71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP-  145 (305)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC-
T ss_pred             HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC-
Confidence            444455432 34579999999999999999998 58999999    553332110  11111 146999999 888753 


Q ss_pred             CCceeEEEeCCccc---ccChHH-HHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          172 TELFDLIFDYTFFC---AIEPEM-RAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       172 ~~~fD~i~~~~~~~---~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..+||+|+|...++   +..+.. ...+|..+.++|||||.+++..+.+
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            46899999977653   221111 1257888999999999998877765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.32  E-value=4.4e-12  Score=96.84  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC-C----------CeEEEEeCChHHHHHHHHHhccCCCCCceEEE-EccCCCC-----
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP-E----------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTW-----  169 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~~-----  169 (231)
                      .++.+|||+|||+|.++..+++. +          .+|+++|+++..         .   ..+++++ .+|+.+.     
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~---~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P---LEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C---CTTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c---CCCCeEEEeccCCCHHHHHH
Confidence            35689999999999999999873 3          689999999831         0   1358899 8988763     


Q ss_pred             ----CCCCceeEEEeCCcccc----cChH-----HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          170 ----CPTELFDLIFDYTFFCA----IEPE-----MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       170 ----~~~~~fD~i~~~~~~~~----~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                          .+..+||+|++...++.    ..+.     ....+++++.++|+|||.+++..+..
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                23458999999664432    1111     11478999999999999999987754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.32  E-value=1.2e-11  Score=100.99  Aligned_cols=109  Identities=15%  Similarity=0.126  Sum_probs=78.1

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      .....++.... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+. ++++++.+|+.+... ..
T Consensus        29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~~  106 (299)
T 2h1r_A           29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-PK  106 (299)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-CC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-cc
Confidence            34455555433 3557999999999999999999888999999999999999998765443 479999999988543 37


Q ss_pred             eeEEEeCCcccccChHHHHHHH---------------HHHHhhcCCCc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWA---------------QKIKDFLKPDG  207 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l---------------~~~~~~L~pgG  207 (231)
                      ||+|+++..++.. .+....++               +...++++++|
T Consensus       107 ~D~Vv~n~py~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          107 FDVCTANIPYKIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             CSEEEEECCGGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             CCEEEEcCCcccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            9999997665543 33334444               33567788877

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.31  E-value=1.6e-11  Score=105.89  Aligned_cols=111  Identities=13%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIF  179 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~  179 (231)
                      ..++.+|||+|||+|..+..+++  .+ .+|+++|+++..++.+++++...+.. +++++++|+.+..   +.+.||+|+
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCEEE
Confidence            44568999999999999999987  44 69999999999999999998877653 6999999998853   336899999


Q ss_pred             eC------CcccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          180 DY------TFFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       180 ~~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +.      .++.+.++       +       ....+++.+.++|||||+|++.+.+..
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            63      22332221       1       126789999999999999998876554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.30  E-value=4e-12  Score=109.44  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             CCcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCC---------------CCeEEEEeCChHHHHHHHHHhccCCCC
Q 026903           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP---------------ERYVVGLEISDIAIKKAEELSSSLPNA  156 (231)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~~iD~s~~~i~~a~~~~~~~~~~  156 (231)
                      .|......+++.. ..++.+|||+|||+|.++..+++.               +.+++|+|+++.+++.|+.++...+..
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            3455444444433 334579999999999999888752               357999999999999999988766553


Q ss_pred             C-ceEEEEccCCCCCCCCceeEEEeCCcccccChH---------------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          157 K-FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPE---------------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       157 ~-~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~---------------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      . ++.+.++|.........||+|+++..+.+....               ....+++.+.+.|+|||++.++.
T Consensus       235 ~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL  307 (445)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence            2 577899998885555589999999777653221               12478999999999999988765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.30  E-value=1.9e-11  Score=104.83  Aligned_cols=100  Identities=21%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++...++.. +++|+++|+.+..     +.++||+|++..
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDP  364 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence            4579999999999999999998889999999999999999998777654 7999999998843     235799999865


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .....     ..+++.+. .++|++++++.+.
T Consensus       365 Pr~g~-----~~~~~~l~-~~~p~~ivyvsc~  390 (433)
T 1uwv_A          365 ARAGA-----AGVMQQII-KLEPIRIVYVSCN  390 (433)
T ss_dssp             CTTCC-----HHHHHHHH-HHCCSEEEEEESC
T ss_pred             CCccH-----HHHHHHHH-hcCCCeEEEEECC
Confidence            54333     13444444 3789998888663

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.30  E-value=5.5e-12  Score=107.61  Aligned_cols=111  Identities=27%  Similarity=0.449  Sum_probs=84.8

Q ss_pred             CcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC
Q 026903           94 PAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (231)
Q Consensus        94 ~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~  169 (231)
                      |......++..... ++.+|||+|||+|.++..+++   .+.+++|+|+++.+++.|          .+++++++|+.+.
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLW   93 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhc
Confidence            45555555555432 457999999999999999987   457999999999988766          3589999999987


Q ss_pred             CCCCceeEEEeCCcccc----------cChHHH-----------------HHHHHHHHhhcCCCcEEEEEEc
Q 026903          170 CPTELFDLIFDYTFFCA----------IEPEMR-----------------AAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~----------~~~~~~-----------------~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+.+.||+|+++..+..          ++.+.+                 ..+++.+.++|+|||+++++.-
T Consensus        94 ~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A           94 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            66678999999755432          223222                 2679999999999999887653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.30  E-value=1.1e-11  Score=107.29  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=85.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|..+..+++.   +..|+++|+++.+++.+++++.+.+.. ++.++++|..+..  ..+.||.|++..
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence            6789999999999999999872   369999999999999999998876543 6999999998842  356899999732


Q ss_pred             ------cccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 ------FFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ------~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                            ++.+       .++       ....++|+.+.++|||||+|++.+.+.
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                  2221       121       123578999999999999999877544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.30  E-value=7.4e-12  Score=107.65  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=87.7

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-  170 (231)
                      ...+..++.  ..++.+|||+|||+|..+..+++   ....|+++|+++.+++.+++++.+.++.  +.++++|..+.. 
T Consensus        90 s~l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~  165 (464)
T 3m6w_A           90 AQAVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE  165 (464)
T ss_dssp             THHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH
T ss_pred             HHHHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh
Confidence            333444443  44678999999999999999986   2358999999999999999999887654  889999987742 


Q ss_pred             -CCCceeEEEeCCc------ccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          171 -PTELFDLIFDYTF------FCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       171 -~~~~fD~i~~~~~------~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                       ..+.||+|++...      +.+       .++       ....++|+.+.++|||||+|+..+-+
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence             3568999996321      211       111       12378899999999999999886644

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.29  E-value=1.8e-12  Score=97.58  Aligned_cols=88  Identities=15%  Similarity=0.012  Sum_probs=72.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-C---CCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C---PTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~~~fD~i~~~  181 (231)
                      ..++.+|||+|||.              +++|+|+.+++.|+++...     ++++..+|+.+. .   ++++||+|++.
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEEEEC
Confidence            34568999999986              2399999999999988642     389999999883 3   56789999999


Q ss_pred             Cccccc-ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          182 TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       182 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+++|+ ++  ...+++++.++|||||++++.+.
T Consensus        71 ~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           71 LVPGSTTLH--SAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ChhhhcccC--HHHHHHHHHHHCCCCEEEEEEcc
Confidence            999998 43  36799999999999999988543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.28  E-value=1.9e-11  Score=103.19  Aligned_cols=122  Identities=13%  Similarity=0.133  Sum_probs=92.9

Q ss_pred             cHHHHH-HHHcCC-CCCCcEEEecCCCchHHHHhcCCC----------------------------------------Ce
Q 026903           95 APIIVH-LHQSGA-LPKGRALVPGCGTGYDVVAMASPE----------------------------------------RY  132 (231)
Q Consensus        95 ~~~~~~-~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------~~  132 (231)
                      .+.+.. ++.... .++..|||++||+|.+++.++..+                                        .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            333433 444333 345799999999999998886521                                        46


Q ss_pred             EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc-cC-hHHHHHHHHHHHhhcCC--CcE
Q 026903          133 VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLKP--DGE  208 (231)
Q Consensus       133 v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~-~~-~~~~~~~l~~~~~~L~p--gG~  208 (231)
                      |+|+|+++.+++.|++++...++.++++|.++|+.+......||+|+++..+.. +. .+....+.+.+.+.|++  |+.
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            999999999999999999887776789999999999766678999999877642 22 24556777777778877  888


Q ss_pred             EEEEEccC
Q 026903          209 LITLMFPI  216 (231)
Q Consensus       209 l~~~~~~~  216 (231)
                      +++++-..
T Consensus       340 ~~iit~~~  347 (385)
T 3ldu_A          340 YYLITSYE  347 (385)
T ss_dssp             EEEEESCT
T ss_pred             EEEEECCH
Confidence            88876544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.28  E-value=9.7e-12  Score=104.54  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=79.5

Q ss_pred             HHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CC-----
Q 026903          101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT-----  172 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~-----  172 (231)
                      +++.....+.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..+++ ++++|+.+|+.+..   ..     
T Consensus       206 ~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          206 ALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             HHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCT
T ss_pred             HHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccc
Confidence            3333344457899999999999999999777999999999999999999987765 47999999987732   11     


Q ss_pred             ---------CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ---------ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ---------~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                               ..||+|+.......        +...+.+.|+++|.++++...
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEESC
T ss_pred             cccccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEECC
Confidence                     27999996543322        234456666788887766543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.28  E-value=2.4e-11  Score=102.81  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=89.8

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC----------------------------------------CeEEEEe
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE----------------------------------------RYVVGLE  137 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------~~v~~iD  137 (231)
                      ..++.... .++..|||++||+|.+++.++..+                                        .+|+|+|
T Consensus       191 a~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  270 (393)
T 3k0b_A          191 AALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD  270 (393)
T ss_dssp             HHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred             HHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence            33444333 345799999999999988877521                                        3599999


Q ss_pred             CChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc-cC-hHHHHHHHHHHHhhcCC--CcEEEEEE
Q 026903          138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLKP--DGELITLM  213 (231)
Q Consensus       138 ~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~-~~-~~~~~~~l~~~~~~L~p--gG~l~~~~  213 (231)
                      +++.+++.|++++...++.++++|+++|+.+.....+||+|+++..+.. +. .+....+.+.+.+.|++  ||.+++++
T Consensus       271 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          271 IDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             SCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999999999888877789999999999666678999999876532 21 24455667777777766  89888877


Q ss_pred             ccC
Q 026903          214 FPI  216 (231)
Q Consensus       214 ~~~  216 (231)
                      -..
T Consensus       351 ~~~  353 (393)
T 3k0b_A          351 SYE  353 (393)
T ss_dssp             CCT
T ss_pred             CCH
Confidence            543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.28  E-value=4.5e-11  Score=100.76  Aligned_cols=117  Identities=9%  Similarity=0.155  Sum_probs=91.8

Q ss_pred             HHHcCC-CCCCcEEEecCCCchHHHHhcCCC----------------------------------------CeEEEEeCC
Q 026903          101 LHQSGA-LPKGRALVPGCGTGYDVVAMASPE----------------------------------------RYVVGLEIS  139 (231)
Q Consensus       101 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------~~v~~iD~s  139 (231)
                      ++.... .++..+||++||+|.+++.++..+                                        .+++|+|++
T Consensus       186 ll~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid  265 (384)
T 3ldg_A          186 IILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD  265 (384)
T ss_dssp             HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence            444333 355799999999999998877521                                        359999999


Q ss_pred             hHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc-c-ChHHHHHHHHHHHhhcCC--CcEEEEEEcc
Q 026903          140 DIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-I-EPEMRAAWAQKIKDFLKP--DGELITLMFP  215 (231)
Q Consensus       140 ~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~-~-~~~~~~~~l~~~~~~L~p--gG~l~~~~~~  215 (231)
                      +.+++.|++++...++.++++|+++|+.+......||+|+++..+.. + +.+....+.+.+.+.||+  ||.+++++-.
T Consensus       266 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  345 (384)
T 3ldg_A          266 GRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND  345 (384)
T ss_dssp             HHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence            99999999999988887789999999999665668999999877642 2 235667777778888877  9998887754


Q ss_pred             CC
Q 026903          216 IS  217 (231)
Q Consensus       216 ~~  217 (231)
                      .+
T Consensus       346 ~~  347 (384)
T 3ldg_A          346 TD  347 (384)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.26  E-value=2.6e-11  Score=103.88  Aligned_cols=109  Identities=16%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEe
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~  180 (231)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++..++.+++++...+.  ++.++.+|..+.   .+.+.||+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEE
Confidence            345689999999999999999883  36999999999999999999887664  478999999884   34468999996


Q ss_pred             CC------cccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~------~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..      ++.+.++       +       ....+++.+.++|||||+|++.+.+.
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            32      2333221       1       12588999999999999999887544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.25  E-value=2.7e-11  Score=96.18  Aligned_cols=86  Identities=17%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~  172 (231)
                      ......++..... ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++++|+.+.. +.
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence            4555666665543 4579999999999999999998899999999999999999987543   47999999998843 32


Q ss_pred             -CceeEEEeCCcc
Q 026903          173 -ELFDLIFDYTFF  184 (231)
Q Consensus       173 -~~fD~i~~~~~~  184 (231)
                       ..| .|+++..+
T Consensus        93 ~~~~-~vv~nlPy  104 (244)
T 1qam_A           93 NQSY-KIFGNIPY  104 (244)
T ss_dssp             SCCC-EEEEECCG
T ss_pred             CCCe-EEEEeCCc
Confidence             345 45554443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.22  E-value=3.6e-11  Score=103.21  Aligned_cols=118  Identities=17%  Similarity=0.047  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--  170 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--  170 (231)
                      ..+..++.  ..++.+|||+|||+|..+..+++   ....|+++|+++.+++.+++++.+.++. ++.++++|..+..  
T Consensus        95 ~l~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           95 MIVGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPH  171 (456)
T ss_dssp             HHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHH
T ss_pred             HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhh
Confidence            33444443  45678999999999999999987   2358999999999999999999877654 6899999987732  


Q ss_pred             CCCceeEEEeCCc------ccccC-------h-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          171 PTELFDLIFDYTF------FCAIE-------P-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       171 ~~~~fD~i~~~~~------~~~~~-------~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..+.||+|++...      +.+-+       +       .....+|+.+.++|||||+|+.++-+.
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            3468999997532      11110       0       122478999999999999998766443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.20  E-value=1.7e-11  Score=103.36  Aligned_cols=100  Identities=13%  Similarity=-0.022  Sum_probs=82.8

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CC-CeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCCC---CCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWC---PTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~~---~~~~fD~i~~  180 (231)
                      ++.+|||++||+|.+++.+++  .| .+|+++|+++.+++.+++|+..+++.++ ++++.+|+.+..   ..+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            457999999999999999988  45 4899999999999999999998887766 999999987743   2457999997


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .. +. .    ...+++.+.+.|+|||+|++.+
T Consensus       132 DP-~g-~----~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP-FG-T----PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC-SS-C----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-Cc-C----HHHHHHHHHHHhCCCCEEEEEe
Confidence            65 21 1    1357888999999999888776

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.18  E-value=1.5e-10  Score=94.12  Aligned_cols=88  Identities=16%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~  172 (231)
                      ...+..++..... ++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...   ++++++++|+.+. .+.
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~  112 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNK  112 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCccc
Confidence            4556667766543 4579999999999999999998889999999999999999987633   4799999999983 444


Q ss_pred             CceeEEEeCCccc
Q 026903          173 ELFDLIFDYTFFC  185 (231)
Q Consensus       173 ~~fD~i~~~~~~~  185 (231)
                      ..||.|+++..++
T Consensus       113 ~~fD~Iv~NlPy~  125 (295)
T 3gru_A          113 LDFNKVVANLPYQ  125 (295)
T ss_dssp             SCCSEEEEECCGG
T ss_pred             CCccEEEEeCccc
Confidence            5799999876554

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.17  E-value=2.4e-10  Score=87.57  Aligned_cols=111  Identities=14%  Similarity=0.020  Sum_probs=81.0

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCCC--
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW--  169 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~--  169 (231)
                      .+...+++.....+.++|||+||  |+-+..+++. +.+|+.+|.+++..+.|++++...+.  .++|+++.+|+.+.  
T Consensus        17 ~~~~~~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~   94 (202)
T 3cvo_A           17 PPAEAEALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGD   94 (202)
T ss_dssp             CHHHHHHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCG
T ss_pred             CHHHHHHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhc
Confidence            34334444332234579999998  4677777774 68999999999999999999998877  67899999996542  


Q ss_pred             ----------------------C-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          170 ----------------------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       170 ----------------------~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                                            . ..++||+|+.-.-.       +...+..+.+.|+|||+|++-.+
T Consensus        95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A           95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETTG
T ss_pred             ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeCC
Confidence                                  1 12689999965432       22455667799999999976443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.14  E-value=1.7e-11  Score=98.04  Aligned_cols=79  Identities=14%  Similarity=0.064  Sum_probs=64.4

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCCh-------HHHHHHHHHhccCCCCCceEEEEccCCCCC---CC--Cce
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISD-------IAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT--ELF  175 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~-------~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~--~~f  175 (231)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++       .+++.|+++...++..++++++++|+.+..   +.  ++|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            457999999999999999999888999999999       999999887655443346999999998842   22  689


Q ss_pred             eEEEeCCcccc
Q 026903          176 DLIFDYTFFCA  186 (231)
Q Consensus       176 D~i~~~~~~~~  186 (231)
                      |+|++...+.+
T Consensus       163 D~V~~dP~~~~  173 (258)
T 2r6z_A          163 DIVYLDPMYPE  173 (258)
T ss_dssp             SEEEECCCC--
T ss_pred             cEEEECCCCCC
Confidence            99999876655

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.13  E-value=1.3e-10  Score=94.12  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             CCCCcEEEecCCC------chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEE-EEccCCCCCCCCcee
Q 026903          107 LPKGRALVPGCGT------GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSF-LKADFFTWCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~------G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~-~~~d~~~~~~~~~fD  176 (231)
                      .++.+|||+|||+      |.  ..+++   .+.+|+|+|+++.        .      .+++| +++|+.+....++||
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v------~~v~~~i~gD~~~~~~~~~fD  125 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V------SDADSTLIGDCATVHTANKWD  125 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B------CSSSEEEESCGGGCCCSSCEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C------CCCEEEEECccccCCccCccc
Confidence            3457999999954      65  22332   3579999999997        1      24788 999999855457899


Q ss_pred             EEEeCCcccc--------cC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCA--------IE-PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~--------~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+++...+.        .. ......+++.+.++|||||.+++..+..
T Consensus       126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9999754221        11 1344678999999999999999977654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.13  E-value=5e-11  Score=100.32  Aligned_cols=99  Identities=15%  Similarity=-0.022  Sum_probs=79.6

Q ss_pred             CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccC---------------CCCCceEEEEccCCCCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL---------------PNAKFVSFLKADFFTWC  170 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~  170 (231)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..+               ++. +++++++|+.+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            5679999999999999999884  358999999999999999998776               543 3999999987732


Q ss_pred             C--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 P--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .  ...||+|+... +..     ...+++.+.+.|+|||+|++.+
T Consensus       126 ~~~~~~fD~I~lDP-~~~-----~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDP-FGS-----PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECC-SSC-----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-CCC-----HHHHHHHHHHhcCCCCEEEEEe
Confidence            1  35799999543 211     1467888999999999888765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.11  E-value=3.3e-12  Score=101.47  Aligned_cols=114  Identities=14%  Similarity=0.177  Sum_probs=82.3

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CC-
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CP-  171 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-  171 (231)
                      ......++..... ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++...   .++++++++|+.+. .+ 
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~~   91 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCccc
Confidence            3445556655543 457999999999999999999888999999999999988877642   25799999999984 33 


Q ss_pred             CCceeEEEeCCcccccChHHHHHHH--------------HHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWA--------------QKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l--------------~~~~~~L~pgG~l~~~~  213 (231)
                      .++| .|+++..++ .+......++              +.+.++|+|||.|.+..
T Consensus        92 ~~~f-~vv~n~Py~-~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           92 KQRY-KIVGNIPYH-LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SSEE-EEEEECCSS-SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             CCCc-EEEEeCCcc-ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            2578 666654433 2222323332              55889999999876543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.10  E-value=3.8e-10  Score=90.64  Aligned_cols=98  Identities=13%  Similarity=0.031  Sum_probs=74.2

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-  172 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  172 (231)
                      ...+..++.... .++ +|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    .+++++++|+.+.... 
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGG
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhh
Confidence            445666666543 345 999999999999999999989999999999999999998753    4799999999884322 


Q ss_pred             -CceeEEEeCCcccccChHHHHHHHHH
Q 026903          173 -ELFDLIFDYTFFCAIEPEMRAAWAQK  198 (231)
Q Consensus       173 -~~fD~i~~~~~~~~~~~~~~~~~l~~  198 (231)
                       ..+|.|+++..++ ++.+...+++..
T Consensus       108 ~~~~~~iv~NlPy~-iss~il~~ll~~  133 (271)
T 3fut_A          108 VPQGSLLVANLPYH-IATPLVTRLLKT  133 (271)
T ss_dssp             SCTTEEEEEEECSS-CCHHHHHHHHHH
T ss_pred             ccCccEEEecCccc-ccHHHHHHHhcC
Confidence             2688888765544 444444444443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.09  E-value=9.1e-11  Score=99.20  Aligned_cols=75  Identities=24%  Similarity=0.196  Sum_probs=64.8

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC--CCCCceEEEEccCCCCCC---CCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFTWCP---TELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~  182 (231)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|++++...  +. ++++++++|+.+..+   ..+||+|++..
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            4789999999999999999999899999999999999999998765  54 579999999998532   24899999864


Q ss_pred             c
Q 026903          183 F  183 (231)
Q Consensus       183 ~  183 (231)
                      .
T Consensus       172 P  172 (410)
T 3ll7_A          172 A  172 (410)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=7.8e-10  Score=88.16  Aligned_cols=85  Identities=8%  Similarity=0.019  Sum_probs=66.6

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-C-
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-P-  171 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-  171 (231)
                      ...+..++.... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++++|+.+.. + 
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~   91 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSS   91 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHH
Confidence            344555665543 34579999999999999999999899999999999999999988652   47999999999842 2 


Q ss_pred             ---CCceeEEEeCCc
Q 026903          172 ---TELFDLIFDYTF  183 (231)
Q Consensus       172 ---~~~fD~i~~~~~  183 (231)
                         .+.|| |+++..
T Consensus        92 ~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           92 VKTDKPLR-VVGNLP  105 (255)
T ss_dssp             SCCSSCEE-EEEECC
T ss_pred             hccCCCeE-EEecCC
Confidence               34688 555433

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.06  E-value=3.6e-09  Score=86.63  Aligned_cols=108  Identities=10%  Similarity=0.120  Sum_probs=79.4

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----CceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~fD~i  178 (231)
                      ..++.+|||+|||+|..+..+++   ...+|+++|+++..++.+++++.+.++ .+++++.+|+.+....    ..||.|
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCCEE
Confidence            45668999999999999999987   336999999999999999999988765 3699999998875432    479999


Q ss_pred             EeCC------ccccc---------Ch-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYT------FFCAI---------EP-------EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~------~~~~~---------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++..      ++..-         ++       ....++|+.+.++|+ ||+|+..+-+
T Consensus       179 l~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          179 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             EEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            9732      12111         10       112456777777787 8988876543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.02  E-value=1.2e-09  Score=96.81  Aligned_cols=100  Identities=22%  Similarity=0.198  Sum_probs=77.2

Q ss_pred             CcEEEecCCCchHHHHhcC----CCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          110 GRALVPGCGTGYDVVAMAS----PER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~----~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..|||+|||+|-++...++    .+.  +|+++|-|+. ...+++....+++.++|+++++|+++...++++|+|++-+.
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwM  437 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELL  437 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcC
Confidence            5899999999988544443    222  6899999985 55677777777788899999999999777789999999765


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      -..+..+.....+....+.|||||+++
T Consensus       438 G~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          438 GSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             BTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHhcCCCcEEc
Confidence            444433444567777889999999865

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.01  E-value=9.3e-10  Score=96.75  Aligned_cols=121  Identities=15%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             CCcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcC----C----------------CCeEEEEeCChHHHHHHHHHhc
Q 026903           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P----------------ERYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~----~----------------~~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      .|......++... ..++.+|||++||+|.++..+++    .                ...++|+|+++.++..|+.++.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            3444444444332 33457999999999999887764    1                1379999999999999999887


Q ss_pred             cCCCCC----ceEEEEccCCCC--CCCCceeEEEeCCcccccCh------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          152 SLPNAK----FVSFLKADFFTW--CPTELFDLIFDYTFFCAIEP------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       152 ~~~~~~----~i~~~~~d~~~~--~~~~~fD~i~~~~~~~~~~~------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..+...    ++.+.++|....  .....||+|+++..+.....            .....++..+.+.|+|||++.++.
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~  312 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  312 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            665442    267899998772  33468999999876654311            122478999999999999988765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.01  E-value=2.6e-10  Score=100.23  Aligned_cols=122  Identities=22%  Similarity=0.179  Sum_probs=88.0

Q ss_pred             CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCC-----------------CCeEEEEeCChHHHHHHHHHhccCC
Q 026903           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-----------------ERYVVGLEISDIAIKKAEELSSSLP  154 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~iD~s~~~i~~a~~~~~~~~  154 (231)
                      -+|.+....++........+|||++||+|.+...+++.                 ...++|+|+++.++..|+.++..++
T Consensus       228 yTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          228 YTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             eCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            34555555555543333359999999999998776531                 4589999999999999999887776


Q ss_pred             CCCceEEEEccCCC--CCCCCceeEEEeCCcccc-------------------------cChH--HHHHHHHHHHhhcCC
Q 026903          155 NAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA-------------------------IEPE--MRAAWAQKIKDFLKP  205 (231)
Q Consensus       155 ~~~~i~~~~~d~~~--~~~~~~fD~i~~~~~~~~-------------------------~~~~--~~~~~l~~~~~~L~p  205 (231)
                      +..++.+.++|...  ..+...||+|+++..+..                         +++.  .--.+++.+.+.|+|
T Consensus       308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  387 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP  387 (544)
T ss_dssp             CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred             CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence            65555557888766  234568999999876653                         1111  112689999999999


Q ss_pred             CcEEEEEE
Q 026903          206 DGELITLM  213 (231)
Q Consensus       206 gG~l~~~~  213 (231)
                      ||++.++.
T Consensus       388 gGr~aiVl  395 (544)
T 3khk_A          388 TGSMALLL  395 (544)
T ss_dssp             EEEEEEEE
T ss_pred             CceEEEEe
Confidence            99987765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.98  E-value=1.8e-09  Score=97.65  Aligned_cols=118  Identities=12%  Similarity=0.088  Sum_probs=85.8

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--------------------------------------------CCeE
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--------------------------------------------ERYV  133 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------------------------------------------~~~v  133 (231)
                      ..++.... .++..|||++||+|.+++.++..                                            ...+
T Consensus       180 a~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i  259 (703)
T 3v97_A          180 AAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF  259 (703)
T ss_dssp             HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred             HHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE
Confidence            33444333 34579999999999998877641                                            1479


Q ss_pred             EEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---CceeEEEeCCcccc-c-ChHHHHHHHHHHH---hhcCC
Q 026903          134 VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLIFDYTFFCA-I-EPEMRAAWAQKIK---DFLKP  205 (231)
Q Consensus       134 ~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD~i~~~~~~~~-~-~~~~~~~~l~~~~---~~L~p  205 (231)
                      +|+|+++.+++.|++|+...++.+.++|.++|+.+..+.   +.||+|+++..+.. + ..+....+.+.+.   +.+.|
T Consensus       260 ~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~  339 (703)
T 3v97_A          260 YGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFG  339 (703)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999988887899999999885322   38999999977642 2 2234444444444   44568


Q ss_pred             CcEEEEEEccC
Q 026903          206 DGELITLMFPI  216 (231)
Q Consensus       206 gG~l~~~~~~~  216 (231)
                      ||.+++++-.+
T Consensus       340 g~~~~ilt~~~  350 (703)
T 3v97_A          340 GWNLSLFSASP  350 (703)
T ss_dssp             TCEEEEEESCH
T ss_pred             CCeEEEEeCCH
Confidence            99998876433

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.93  E-value=6.1e-09  Score=84.09  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=81.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccC----CCCCceEEEEccCCCCC--CCCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSL----PNAKFVSFLKADFFTWC--PTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~----~~~~~i~~~~~d~~~~~--~~~~fD~  177 (231)
                      ...+++||-||.|.|..+..+++ + ..+|+.+|+++++++.+++.+...    ..+++++++.+|...+.  ..++||+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            34458999999999999999998 3 459999999999999999876431    12468999999999954  3458999


Q ss_pred             EEeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          178 IFDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       178 i~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+.-..-..-+..  .-..+++.+.++|+|||++++..
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            9975331111111  11468899999999999988743

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.91  E-value=3.1e-09  Score=84.46  Aligned_cols=70  Identities=9%  Similarity=0.167  Sum_probs=58.2

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~  169 (231)
                      ...+..++..... ++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++ .    ..+++++++|+.+.
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhC
Confidence            4556666666543 45799999999999999999985 7999999999999999877 2    24799999999984

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.89  E-value=8.7e-09  Score=90.41  Aligned_cols=106  Identities=14%  Similarity=0.042  Sum_probs=81.7

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-----CCeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCC----CCCCceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW----CPTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-----~~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~fD~  177 (231)
                      ++.+|||++||+|.+...+++.     ...++|+|+++.++..|+.++..++.. +++.+.++|....    .....||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            4579999999999998877652     458999999999999999988777654 4688999998874    23568999


Q ss_pred             EEeCCcccc-------------------cChH--HHHHHHHHHHhhcC-CCcEEEEEE
Q 026903          178 IFDYTFFCA-------------------IEPE--MRAAWAQKIKDFLK-PDGELITLM  213 (231)
Q Consensus       178 i~~~~~~~~-------------------~~~~--~~~~~l~~~~~~L~-pgG~l~~~~  213 (231)
                      |+++..+..                   +++.  .--.++..+.+.|+ |||++.++.
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl  358 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL  358 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence            999865431                   1110  01258999999999 999987765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.88  E-value=4e-09  Score=75.68  Aligned_cols=99  Identities=15%  Similarity=0.047  Sum_probs=69.3

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCc-hHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--C
Q 026903           98 IVHLHQSGALPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--E  173 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~  173 (231)
                      +.+++.+...++.+|||+|||.| ..+..|++ .|..|+++|+++.+++                |++.|++++..+  .
T Consensus        25 LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~   88 (153)
T 2k4m_A           25 LAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIYR   88 (153)
T ss_dssp             HHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHHT
T ss_pred             HHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcccccC
Confidence            44444443445689999999999 69999997 9999999999987543                889999996653  4


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      .||+|++....    ++. ...+.++++.  -|.-|++..+..+..
T Consensus        89 ~~DLIYsirPP----~El-~~~i~~lA~~--v~adliI~pL~~E~~  127 (153)
T 2k4m_A           89 GAALIYSIRPP----AEI-HSSLMRVADA--VGARLIIKPLTGEDI  127 (153)
T ss_dssp             TEEEEEEESCC----TTT-HHHHHHHHHH--HTCEEEEECBTTBCC
T ss_pred             CcCEEEEcCCC----HHH-HHHHHHHHHH--cCCCEEEEcCCCCcC
Confidence            89999864432    222 2333444443  366677777766543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.88  E-value=1.5e-09  Score=96.41  Aligned_cols=100  Identities=17%  Similarity=0.083  Sum_probs=75.9

Q ss_pred             CcEEEecCCCchHHHHhcC----CC-----------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---
Q 026903          110 GRALVPGCGTGYDVVAMAS----PE-----------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---  171 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~----~~-----------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---  171 (231)
                      ..|||+|||+|-++...++    .+           .+|+++|-++.++...+.... +++.++|+++++|+++...   
T Consensus       411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccccc
Confidence            5899999999999643322    12           289999999988876665543 5566789999999999433   


Q ss_pred             ---CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          172 ---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       172 ---~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                         .+.+|+|++-..-..+..+.....|..+.+.|||||+++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence               578999999766444444555667888889999999865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.88  E-value=3.2e-09  Score=86.55  Aligned_cols=74  Identities=20%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CC---CceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT---ELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~---~~fD~i  178 (231)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|.|+.+++.|++++..++  ++++++++|+.+..   ..   .+||.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            45689999999999999999984  5799999999999999999987764  57999999987732   11   479999


Q ss_pred             EeCC
Q 026903          179 FDYT  182 (231)
Q Consensus       179 ~~~~  182 (231)
                      ++..
T Consensus       103 l~D~  106 (301)
T 1m6y_A          103 LMDL  106 (301)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.87  E-value=2.1e-09  Score=86.75  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=57.2

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCe----EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERY----VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~----v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~  169 (231)
                      ...+..++.... .++.+|||||||+|.++..|++.+..    |+++|+++.+++.++++.     .++++++++|+.+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            345555665543 35589999999999999999986666    999999999999999884     24799999999884

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=8.4e-10  Score=87.97  Aligned_cols=78  Identities=15%  Similarity=0.058  Sum_probs=60.6

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CCCceEEEEccCCCCCC--CCceeEEE
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NAKFVSFLKADFFTWCP--TELFDLIF  179 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~~~i~~~~~d~~~~~~--~~~fD~i~  179 (231)
                      .+|||+|||+|..+..+++.|.+|+++|.++.++..+++++...       + ...+++++++|..+..+  ...||+|+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~  169 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence            79999999999999999998889999999998766665543211       1 12469999999887332  24799999


Q ss_pred             eCCccccc
Q 026903          180 DYTFFCAI  187 (231)
Q Consensus       180 ~~~~~~~~  187 (231)
                      +...+.+-
T Consensus       170 lDP~y~~~  177 (258)
T 2oyr_A          170 LDPMFPHK  177 (258)
T ss_dssp             ECCCCCCC
T ss_pred             EcCCCCCc
Confidence            98777653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.83  E-value=2.7e-09  Score=84.85  Aligned_cols=84  Identities=11%  Similarity=-0.028  Sum_probs=61.2

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCe--EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERY--VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~--v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  172 (231)
                      ..+..+++... .++.+|||||||+|.++. +.+ +.+  |+++|+++.+++.++++....   ++++++++|+.+....
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHH
Confidence            34455555443 345799999999999999 654 566  999999999999999876542   4799999999884311


Q ss_pred             ------CceeEEEeCCcc
Q 026903          173 ------ELFDLIFDYTFF  184 (231)
Q Consensus       173 ------~~fD~i~~~~~~  184 (231)
                            +..+.|+++..+
T Consensus        83 ~~~~~~~~~~~vvsNlPY  100 (252)
T 1qyr_A           83 ELAEKMGQPLRVFGNLPY  100 (252)
T ss_dssp             HHHHHHTSCEEEEEECCT
T ss_pred             HhhcccCCceEEEECCCC
Confidence                  134677766544

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.73  E-value=1.7e-07  Score=74.40  Aligned_cols=120  Identities=16%  Similarity=0.098  Sum_probs=75.4

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~  170 (231)
                      ...+.++.++..+ ++.+|||+|||+|.++..++.. +. .++++|+...+...... ...  ...++..+..++.. .+
T Consensus        60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~--~g~~ii~~~~~~dv~~l  136 (277)
T 3evf_A           60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQS--LGWNIITFKDKTDIHRL  136 (277)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCB--TTGGGEEEECSCCTTTS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCc--CCCCeEEEeccceehhc
Confidence            3445666666433 4479999999999999988763 43 78888887432000000 000  01144555665433 34


Q ss_pred             CCCceeEEEeCCccc----ccChHHHHHHHHHHHhhcCCC-cEEEEEEccCC
Q 026903          171 PTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD-GELITLMFPIS  217 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~----~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~~  217 (231)
                      +...||+|+|..+.+    ..+......+|+.+.++|+|| |.+++-.|.|.
T Consensus       137 ~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py  188 (277)
T 3evf_A          137 EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY  188 (277)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT
T ss_pred             CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC
Confidence            556899999987665    221111124578889999999 99999888853

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.69  E-value=2.4e-07  Score=77.45  Aligned_cols=107  Identities=15%  Similarity=0.197  Sum_probs=73.8

Q ss_pred             CcEEEecCCCchHHHHhcC-----------------CCCeEEEEeCChHHHHHHHHHhccCC-----------CCCceEE
Q 026903          110 GRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP-----------NAKFVSF  161 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~-----------------~~~~v~~iD~s~~~i~~a~~~~~~~~-----------~~~~i~~  161 (231)
                      .+|+|+|||+|.++..++.                 +..+|..-|+...-....=+.+....           ...+-.|
T Consensus        54 ~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f  133 (374)
T 3b5i_A           54 FTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYF  133 (374)
T ss_dssp             EEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSE
T ss_pred             eEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceE
Confidence            6999999999999988731                 23478888877665544433333210           0001112


Q ss_pred             ---EEccCCC-CCCCCceeEEEeCCcccccCh------------------------------------HHHHHHHHHHHh
Q 026903          162 ---LKADFFT-WCPTELFDLIFDYTFFCAIEP------------------------------------EMRAAWAQKIKD  201 (231)
Q Consensus       162 ---~~~d~~~-~~~~~~fD~i~~~~~~~~~~~------------------------------------~~~~~~l~~~~~  201 (231)
                         +.+.+.. .+|.++||+|+++.++||++.                                    .+...+|+..++
T Consensus       134 ~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~  213 (374)
T 3b5i_A          134 VAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA  213 (374)
T ss_dssp             EEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3333333 668889999999999999861                                    145668999999


Q ss_pred             hcCCCcEEEEEEccC
Q 026903          202 FLKPDGELITLMFPI  216 (231)
Q Consensus       202 ~L~pgG~l~~~~~~~  216 (231)
                      .|+|||++++.....
T Consensus       214 eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          214 EVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HEEEEEEEEEEEEEC
T ss_pred             HhCCCCEEEEEEecC
Confidence            999999998877755

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.66  E-value=1.6e-07  Score=84.77  Aligned_cols=106  Identities=8%  Similarity=0.101  Sum_probs=74.8

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC-----CeEEEEeCChHHHHHH--HHHhccCCCC---CceEEEEccCCCC--CCCCce
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE-----RYVVGLEISDIAIKKA--EELSSSLPNA---KFVSFLKADFFTW--CPTELF  175 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~-----~~v~~iD~s~~~i~~a--~~~~~~~~~~---~~i~~~~~d~~~~--~~~~~f  175 (231)
                      ++.+|||+|||+|.++..+++..     .+++|+|+++.++..|  +.++..+...   ....+...|+..+  .....|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            45799999999999999987632     3799999999999999  5554332111   1235556666652  234689


Q ss_pred             eEEEeCCcccc-c-ChH-------------------------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDYTFFCA-I-EPE-------------------------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~~~~~~-~-~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+|+++..+.. . .+.                         ....+++.+.+.|+|||++.++.
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl  465 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM  465 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999977632 1 111                         12357888999999999988765

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.64  E-value=5.9e-08  Score=80.77  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCC-------CCCceEEEEccCCCCC-----CCCc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP-------NAKFVSFLKADFFTWC-----PTEL  174 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~-------~~~~i~~~~~d~~~~~-----~~~~  174 (231)
                      ++++||-+|.|.|..+..+++ +..+|+.+|+++++++.+++.+....       ..++++++.+|...+.     ....
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            458999999999999999998 44589999999999999999764321       1246899999988743     2357


Q ss_pred             eeEEEeCCccc-------ccCh-HHHHHHHHHHHhhcCCCcEEEEE
Q 026903          175 FDLIFDYTFFC-------AIEP-EMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       175 fD~i~~~~~~~-------~~~~-~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ||+|+.-..-.       .... .....+++.+.++|+|||+++..
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            99999653211       1111 12367889999999999998764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.62  E-value=2.2e-08  Score=79.82  Aligned_cols=104  Identities=19%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             CCCcEEEecCCCchHHHHhcC---------C-----CCeEEEEeCCh---HHHH-----------HHHHHhccC------
Q 026903          108 PKGRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIK-----------KAEELSSSL------  153 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~---------~-----~~~v~~iD~s~---~~i~-----------~a~~~~~~~------  153 (231)
                      ++.+|||+|+|+|+.+..+++         +     ..+++++|..+   +.+.           .+++.....      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            346999999999999877543         2     14899999887   3333           455554331      


Q ss_pred             -------CCCCceEEEEccCCCCCC---C---CceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEE
Q 026903          154 -------PNAKFVSFLKADFFTWCP---T---ELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       154 -------~~~~~i~~~~~d~~~~~~---~---~~fD~i~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~  211 (231)
                             ....+++++.+|+.+..+   .   ..||+|+.-..-..-.++ -...+++.+.++|+|||+|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                   111468899999887322   1   279999974321111111 125789999999999999874

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.60  E-value=2.5e-07  Score=77.46  Aligned_cols=106  Identities=8%  Similarity=0.012  Sum_probs=71.5

Q ss_pred             CCcEEEecCCCchHHHHhcCC-------------------CCeEEEEeCC-----------hHHHHHHHHHhccCCCCCc
Q 026903          109 KGRALVPGCGTGYDVVAMASP-------------------ERYVVGLEIS-----------DIAIKKAEELSSSLPNAKF  158 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~~iD~s-----------~~~i~~a~~~~~~~~~~~~  158 (231)
                      ..+|+|+||++|.++..+...                   ..+|+..|+.           +...+.+++.....   .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~---~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK---IG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC---TT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC---CC
Confidence            469999999999998877531                   2368888887           44444433322110   12


Q ss_pred             eEEEEccCCC----CCCCCceeEEEeCCcccccChH-------------------------------------HHHHHHH
Q 026903          159 VSFLKADFFT----WCPTELFDLIFDYTFFCAIEPE-------------------------------------MRAAWAQ  197 (231)
Q Consensus       159 i~~~~~d~~~----~~~~~~fD~i~~~~~~~~~~~~-------------------------------------~~~~~l~  197 (231)
                      ..|+.+.-..    ++|.+++|+|+++.++||++..                                     +...+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455554333    6788999999999999997421                                     1123477


Q ss_pred             HHHhhcCCCcEEEEEEccCC
Q 026903          198 KIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       198 ~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .-++.|+|||++++......
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~  229 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKE  229 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCC
T ss_pred             HHHHHhccCCeEEEEEecCC
Confidence            77999999999988777553

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.57  E-value=1.2e-07  Score=76.31  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=79.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC-------CCCeEEEEeCChH--------------------------HHHHHHHHhccC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISDI--------------------------AIKKAEELSSSL  153 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~-------~~~~v~~iD~s~~--------------------------~i~~a~~~~~~~  153 (231)
                      ..++.|||+|+..|+.+..++.       .+.+++++|..+.                          .++.+++++.+.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3458999999999999888764       2568999996421                          366788888888


Q ss_pred             CCC-CceEEEEccCCCCC---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          154 PNA-KFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       154 ~~~-~~i~~~~~d~~~~~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ++. ++|+++.+++.+..   +.++||+|+.-.-.+    +....++..+...|+|||++++-++
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            773 78999999998833   246899999654321    3335788999999999999988776

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.55  E-value=2.1e-07  Score=77.30  Aligned_cols=108  Identities=12%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             CcEEEecCCCchHHHHhcCC------------------CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE---ccCCC
Q 026903          110 GRALVPGCGTGYDVVAMASP------------------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT  168 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~------------------~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~  168 (231)
                      .+|+|+||++|.+++.+...                  ..+|+..|+...-....-+.+.......+..|+.   +.+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            69999999999988776542                  2378999998887777766554321001223444   34444


Q ss_pred             -CCCCCceeEEEeCCcccccCh-------------------------------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          169 -WCPTELFDLIFDYTFFCAIEP-------------------------------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       169 -~~~~~~fD~i~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                       ++|.+++|+|+++.++||++.                               .+...+|+.-++.|+|||++++.....
T Consensus       133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr  212 (359)
T 1m6e_X          133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence             678899999999999999743                               134567899999999999998877655


Q ss_pred             C
Q 026903          217 S  217 (231)
Q Consensus       217 ~  217 (231)
                      .
T Consensus       213 ~  213 (359)
T 1m6e_X          213 R  213 (359)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.50  E-value=2.2e-07  Score=73.87  Aligned_cols=118  Identities=17%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc--cCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFTW  169 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~--d~~~~  169 (231)
                      ...+.++.++..+ ++.+|||+|||.|.++..+++ .+. .|+|+|+...+...+.. ...  ...++..+..  |+. .
T Consensus        76 AfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~--~g~~ii~~~~~~dv~-~  151 (282)
T 3gcz_A           76 SAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTT--LGWNLIRFKDKTDVF-N  151 (282)
T ss_dssp             HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCGG-G
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-ccc--CCCceEEeeCCcchh-h
Confidence            3445666666533 457999999999999998875 343 78999997642111110 000  1123333343  332 2


Q ss_pred             CCCCceeEEEeCCccc----ccChHHHHHHHHHHHhhcCCC--cEEEEEEccC
Q 026903          170 CPTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD--GELITLMFPI  216 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~----~~~~~~~~~~l~~~~~~L~pg--G~l~~~~~~~  216 (231)
                      .+...+|+|+|..+..    .++......+|+.+.++|+||  |.+++-.|.+
T Consensus       152 l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          152 MEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred             cCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence            3457899999987766    121111124577788999999  9999988885

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.42  E-value=1.6e-06  Score=69.27  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------CCCceeEEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------PTELFDLIF  179 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~fD~i~  179 (231)
                      ..+++.+||.+||.|..+..+++.+.+|+|+|.++.+++.+++ +..    ++++++++|+.+..      ....+|.|+
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVDGIL   94 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence            3456899999999999999999987799999999999999998 644    47999999998831      124799999


Q ss_pred             e
Q 026903          180 D  180 (231)
Q Consensus       180 ~  180 (231)
                      +
T Consensus        95 ~   95 (285)
T 1wg8_A           95 A   95 (285)
T ss_dssp             E
T ss_pred             e
Confidence            6

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.42  E-value=2.1e-06  Score=71.27  Aligned_cols=99  Identities=15%  Similarity=0.065  Sum_probs=68.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+||++|.++..++++|..|++||+.+-.- .    ...   .++++++++|.+...+ ...||+|+|-.+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~-~----l~~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ-S----LMD---TGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH-H----HHT---TTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh-h----hcc---CCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            34678999999999999999999999999999865211 1    111   2479999999999654 4589999998775


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .   +.....++......+..++.++..-.+
T Consensus       281 ~---p~~~~~l~~~wl~~~~~~~aI~~lKL~  308 (375)
T 4auk_A          281 K---PAKVAALMAQWLVNGWCRETIFNLKLP  308 (375)
T ss_dssp             C---HHHHHHHHHHHHHTTSCSEEEEEEECC
T ss_pred             C---hHHhHHHHHHHHhccccceEEEEEEec
Confidence            3   233344444444444444555544443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.32  E-value=3.5e-06  Score=70.13  Aligned_cols=111  Identities=13%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCC-----CCceEEEEccCCCC--CCCCcee
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPN-----AKFVSFLKADFFTW--CPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~--~~~~~fD  176 (231)
                      ..++.+|||+.+|.|.=+..++..+.  .++++|+++.-++..++++.+.+.     ..++.+...|...+  ...+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            56778999999999999988887544  799999999999999888765432     24688888887773  2456899


Q ss_pred             EEEeCCc-------cc--------ccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTF-------FC--------AIEP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~-------~~--------~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .|++-..       ..        ...+       ..+.++|....++|||||+|+.++=+.
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            9996321       11        1111       123678899999999999998766444

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.29  E-value=1.4e-06  Score=70.92  Aligned_cols=61  Identities=23%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             CCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      .+...+..++.....++..|||++||+|..+..+++.|.+++|+|+++.+++.|++++...
T Consensus       220 ~p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          220 FPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             SCHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3456667777766667789999999999999999999999999999999999999987653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.26  E-value=6.2e-06  Score=72.25  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=81.7

Q ss_pred             CCCcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcC----C-----------CCeEEEEeCChHHHHHHHHHhccCCC
Q 026903           92 GQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P-----------ERYVVGLEISDIAIKKAEELSSSLPN  155 (231)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~----~-----------~~~v~~iD~s~~~i~~a~~~~~~~~~  155 (231)
                      -+|++.+.-+++.. ..++.+|+|.+||+|.+...+.+    .           ...++|+|+++.+...|+-++.-++.
T Consensus       200 yTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~  279 (530)
T 3ufb_A          200 YTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL  279 (530)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence            34566655555443 33457999999999999877653    1           23699999999999999987655543


Q ss_pred             CCceEEEEccCCCC-----CCCCceeEEEeCCcccccCh--------------HHHHHHHHHHHhhcC-------CCcEE
Q 026903          156 AKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAIEP--------------EMRAAWAQKIKDFLK-------PDGEL  209 (231)
Q Consensus       156 ~~~i~~~~~d~~~~-----~~~~~fD~i~~~~~~~~~~~--------------~~~~~~l~~~~~~L~-------pgG~l  209 (231)
                      . ...+..+|....     .....||+|+++..+..-..              +....+++.+.+.||       |||++
T Consensus       280 ~-~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~  358 (530)
T 3ufb_A          280 E-YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA  358 (530)
T ss_dssp             S-CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred             c-cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence            2 245677776652     12347999999877642110              122457788888887       79998


Q ss_pred             EEEE
Q 026903          210 ITLM  213 (231)
Q Consensus       210 ~~~~  213 (231)
                      .++.
T Consensus       359 avVl  362 (530)
T 3ufb_A          359 AVVV  362 (530)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7765

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.23  E-value=9.3e-07  Score=69.28  Aligned_cols=114  Identities=18%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             HHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCc---eEEEEc-cCCC
Q 026903           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKF---VSFLKA-DFFT  168 (231)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~---i~~~~~-d~~~  168 (231)
                      ..+.++.++. ..|+.+|||+||+.|.++..+++.  ...|.|.++....     +..........   +.|.++ |+.+
T Consensus        60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-----~~~P~~~~~~Gv~~i~~~~G~Df~~  134 (269)
T 2px2_A           60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-----HEEPMLMQSYGWNIVTMKSGVDVFY  134 (269)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-----SCCCCCCCSTTGGGEEEECSCCGGG
T ss_pred             HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-----ccCCCcccCCCceEEEeeccCCccC
Confidence            3355555554 335689999999999999999985  2233444332210     00000000012   355557 9987


Q ss_pred             CCCCCceeEEEeCCcccccCh----HHH-HHHHHHHHhhcCCCc-EEEEEEccC
Q 026903          169 WCPTELFDLIFDYTFFCAIEP----EMR-AAWAQKIKDFLKPDG-ELITLMFPI  216 (231)
Q Consensus       169 ~~~~~~fD~i~~~~~~~~~~~----~~~-~~~l~~~~~~L~pgG-~l~~~~~~~  216 (231)
                      .. ...+|+|+|-.... -..    ..+ ..+|..+.+.|+||| .+++-.|.+
T Consensus       135 ~~-~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          135 KP-SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             SC-CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CC-CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            43 34799999976653 211    111 135777779999999 999988875

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.17  E-value=4.6e-06  Score=66.78  Aligned_cols=119  Identities=21%  Similarity=0.177  Sum_probs=72.6

Q ss_pred             cHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCC-CC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc--cCCCC
Q 026903           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFTW  169 (231)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~--d~~~~  169 (231)
                      ...+.++.++. ..++.+|||+||++|.++..+++. +. .|+|+|+.......... ...  ...++.....  |+.. 
T Consensus        67 a~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~di~~-  142 (300)
T 3eld_A           67 AAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKSNVFT-  142 (300)
T ss_dssp             HHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCTTT-
T ss_pred             HHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc--cCCceEEeecCceeee-
Confidence            34455555553 235589999999999999999974 43 78999986532100000 000  0112333332  3332 


Q ss_pred             CCCCceeEEEeCCccc----ccChHHHHHHHHHHHhhcCCC-cEEEEEEccCC
Q 026903          170 CPTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD-GELITLMFPIS  217 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~----~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~~  217 (231)
                      .....+|+|+|..+..    .++......+|..+.+.|+|| |.+++-.|.+.
T Consensus       143 l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y  195 (300)
T 3eld_A          143 MPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY  195 (300)
T ss_dssp             SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT
T ss_pred             cCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc
Confidence            2346899999976665    111111134577788999999 99999888843

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.12  E-value=6.7e-05  Score=58.05  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCCCC
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWCP  171 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~~  171 (231)
                      ..+..+.++.. .++.+|||+||++|.++...+. .+. .|+++|+-..-.+.- ...+.+++ +.++|..+ |++...+
T Consensus        65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~~~  142 (267)
T 3p8z_A           65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYLPP  142 (267)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGCCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeecCC
Confidence            44566666553 3558999999999999997776 554 799999976532100 00112222 35899998 8766544


Q ss_pred             CCceeEEEeCCcccccChH-HH---HHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          172 TELFDLIFDYTFFCAIEPE-MR---AAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~-~~---~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                       .++|.|+|...-..-.+. +.   -++|+.+.+.|++ |-+++-.+.++.
T Consensus       143 -~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          143 -EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             -ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence             679999998665433321 11   3477777899999 788887777754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.10  E-value=3.6e-05  Score=61.42  Aligned_cols=120  Identities=19%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCCC
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC  170 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~  170 (231)
                      ...+..+.++.. .++.+|||+||++|.++..++. .|. .|+|+|+-..--+.-+ ..+.++. .-+.|+.+ |+....
T Consensus        80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l~  157 (321)
T 3lkz_A           80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYRP  157 (321)
T ss_dssp             HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhCC
Confidence            344566666653 3557999999999999997766 555 7999999654210000 0001111 23778887 876655


Q ss_pred             CCCceeEEEeCCcccccChH-H--H-HHHHHHHHhhcCCC-cEEEEEEccCC
Q 026903          171 PTELFDLIFDYTFFCAIEPE-M--R-AAWAQKIKDFLKPD-GELITLMFPIS  217 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~-~--~-~~~l~~~~~~L~pg-G~l~~~~~~~~  217 (231)
                      + ..+|+|+|-..=..-.+. +  + -++|+.+.+.|++| |-+++-.+.+.
T Consensus       158 ~-~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY  208 (321)
T 3lkz_A          158 S-ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY  208 (321)
T ss_dssp             C-CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred             C-CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence            4 679999997662222211 1  1 34777778999999 88888877773

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.99  E-value=1.2e-05  Score=63.97  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=52.5

Q ss_pred             CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      ..|...+..++.....++..|||++||+|..+....+.|.+++|+|+++..++.+++++...
T Consensus       196 ~~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          196 PKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc
Confidence            33455667777766667789999999999999999999999999999999999999998654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.90  E-value=1.9e-05  Score=63.04  Aligned_cols=99  Identities=17%  Similarity=0.016  Sum_probs=75.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i~~~~  182 (231)
                      .+..+||+-+|+|.++..+++.+.+++.+|.+++.++..++++..   ..++++++.|...     ..+..+||+|++-.
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            457899999999999999999778999999999999999998865   2579999999766     12345799999766


Q ss_pred             cccccChHHHHHHHHHHHh--hcCCCcEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKD--FLKPDGELIT  211 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~  211 (231)
                      .+..-  ++..+.++.+.+  .+.|+|++++
T Consensus       168 PYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          168 SYERK--EEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CCCST--THHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCC--cHHHHHHHHHHHhCccCCCeEEEE
Confidence            65532  234455555544  4567776654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.75  E-value=6.3e-05  Score=60.05  Aligned_cols=98  Identities=19%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             CCCcEEEecC------CCchHHH-HhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEe
Q 026903          108 PKGRALVPGC------GTGYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGc------G~G~~~~-~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~  180 (231)
                      .+.+|||+|+      ..|.... .+...|..|+++|+.+-.         .    +.-.++++|........+||+|++
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~---------s----da~~~IqGD~~~~~~~~k~DLVIS  175 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV---------S----DADSTLIGDCATVHTANKWDLIIS  175 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB---------C----SSSEEEESCGGGEEESSCEEEEEE
T ss_pred             CCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc---------c----CCCeEEEccccccccCCCCCEEEe
Confidence            3589999996      5666433 333345699999997742         1    112569999877555678999998


Q ss_pred             CCccc---ccC------hHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          181 YTFFC---AIE------PEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       181 ~~~~~---~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      -....   +.+      ....+.++.-+.+.|+|||.+++-.|..++
T Consensus       176 DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          176 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            64322   111      124467778888999999999998887754

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.72  E-value=0.0011  Score=53.92  Aligned_cols=106  Identities=5%  Similarity=-0.043  Sum_probs=83.4

Q ss_pred             CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCC---------CCCCceeE
Q 026903          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW---------CPTELFDL  177 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~---------~~~~~fD~  177 (231)
                      .-|+++|||.=.....+.. .+.+++=+| .|..++..++.+...+  -..+..++.+|+.+.         +.....-+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence            5799999998877877774 457899999 5999999888876422  135788999999861         11234567


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++..++++++++....+++.+.+.+.||+.|++....+
T Consensus       183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             EEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            888899999999999999999999999999887766554

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.71  E-value=0.00036  Score=57.48  Aligned_cols=107  Identities=11%  Similarity=0.174  Sum_probs=82.2

Q ss_pred             CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC--------------------CCCceEEEEcc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--------------------NAKFVSFLKAD  165 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~--------------------~~~~i~~~~~d  165 (231)
                      +...|+.+|||.......+..  .+..++-+|. |+.++.-++.+...+                    ..++.+++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            447999999999998888876  4557778887 888877666654431                    12578999999


Q ss_pred             CCCC------C----CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          166 FFTW------C----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       166 ~~~~------~----~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +.+.      .    ......++++-.++.+++++...++++.+.+.. |+|.+++.++-.
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~  235 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  235 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence            9882      1    224678999999999999999999999999987 778776666543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.47  E-value=0.0006  Score=55.76  Aligned_cols=78  Identities=17%  Similarity=0.071  Sum_probs=59.0

Q ss_pred             HHHHHcC-CCCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C
Q 026903           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P  171 (231)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~  171 (231)
                      .+.+... ..++..++|..||.|..+..+++.   ..+|+|+|.++.+++.++ ++.    .++++++++++.+..   .
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~----~~Rv~lv~~nF~~l~~~L~  121 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID----DPRFSIIHGPFSALGEYVA  121 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC----CTTEEEEESCGGGHHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc----CCcEEEEeCCHHHHHHHHH
Confidence            3444443 346689999999999999999873   459999999999999984 441    358999999988831   1


Q ss_pred             ----CCceeEEEeC
Q 026903          172 ----TELFDLIFDY  181 (231)
Q Consensus       172 ----~~~fD~i~~~  181 (231)
                          .+++|.|+..
T Consensus       122 ~~g~~~~vDgILfD  135 (347)
T 3tka_A          122 ERDLIGKIDGILLD  135 (347)
T ss_dssp             HTTCTTCEEEEEEE
T ss_pred             hcCCCCcccEEEEC
Confidence                1369998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.35  E-value=0.00042  Score=56.84  Aligned_cols=63  Identities=10%  Similarity=-0.042  Sum_probs=54.6

Q ss_pred             CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC
Q 026903           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~  154 (231)
                      ..|...+..++.....++..|||..||+|..+....+.|.+.+|+|+++..++.+++++....
T Consensus       236 ~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          236 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             cCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            455677778887666778999999999999999999999999999999999999999886543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.29  E-value=0.00044  Score=57.28  Aligned_cols=71  Identities=17%  Similarity=0.101  Sum_probs=56.2

Q ss_pred             cHHHHHHHHcCCC-------CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc
Q 026903           95 APIIVHLHQSGAL-------PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (231)
Q Consensus        95 ~~~~~~~~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d  165 (231)
                      ...+.++++....       ++..|||||.|.|.++..|+..  +.+|+++|+++..+...++.. ..   ++++++.+|
T Consensus        38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l~ii~~D  113 (353)
T 1i4w_A           38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPLQILKRD  113 (353)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSCEEECSC
T ss_pred             HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCEEEEECC
Confidence            4555666655432       2478999999999999999974  569999999999999998876 22   579999999


Q ss_pred             CCCC
Q 026903          166 FFTW  169 (231)
Q Consensus       166 ~~~~  169 (231)
                      +..+
T Consensus       114 ~l~~  117 (353)
T 1i4w_A          114 PYDW  117 (353)
T ss_dssp             TTCH
T ss_pred             ccch
Confidence            9763

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.25  E-value=0.0017  Score=54.36  Aligned_cols=68  Identities=15%  Similarity=-0.058  Sum_probs=55.3

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------CCCceeEEE
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------PTELFDLIF  179 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~fD~i~  179 (231)
                      .+++|+.||.|.++..+.+.|. .+.++|+++.+++..+.+..      +..++.+|+.+..         ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            5899999999999999988888 46799999999999888863      3578888988742         235799999


Q ss_pred             eCCc
Q 026903          180 DYTF  183 (231)
Q Consensus       180 ~~~~  183 (231)
                      ....
T Consensus        77 ggpP   80 (376)
T 3g7u_A           77 GGPP   80 (376)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            7543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.23  E-value=0.00012  Score=74.63  Aligned_cols=101  Identities=16%  Similarity=0.048  Sum_probs=52.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---C----CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---P----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~----~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~  177 (231)
                      .+..+|||||.|+|..+..+.+   .    ...++.+|+|+...+.+++++...    .+.....|..++  +....||+
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence            3457999999999976554432   1    127899999998887777765432    133322233322  23457999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |++..++|..  .+....|.+++++|||||.|++.+
T Consensus      1315 via~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1315 LVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEEECC----------------------CCEEEEEE
T ss_pred             EEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999998754  344667899999999999988765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.13  E-value=0.00065  Score=55.61  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=51.6

Q ss_pred             CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCCh---HHHHHHHHHhccC
Q 026903           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISD---IAIKKAEELSSSL  153 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~---~~i~~a~~~~~~~  153 (231)
                      ..|...+..++.....++..|||..||+|..+......|.+.+|+|+++   ..++.+++++...
T Consensus       226 ~kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          226 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            3456667777776667789999999999999999999999999999999   9999999987543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.85  E-value=0.0015  Score=54.02  Aligned_cols=68  Identities=16%  Similarity=0.047  Sum_probs=55.0

Q ss_pred             CcEEEecCCCchHHHHhcCCC--C-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----CceeEEEeCC
Q 026903          110 GRALVPGCGTGYDVVAMASPE--R-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~--~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~fD~i~~~~  182 (231)
                      .+|+|+.||.|.+.+.+...|  . .|+++|+++.+++..+.+...      ..++.+|+.+....    ..+|+|+...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            589999999999999998877  3 699999999999999998742      34778888885421    1589999765


Q ss_pred             c
Q 026903          183 F  183 (231)
Q Consensus       183 ~  183 (231)
                      .
T Consensus        77 P   77 (343)
T 1g55_A           77 P   77 (343)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.78  E-value=0.011  Score=46.60  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=70.8

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---------CCCeEEEEe-----CCh----------------------HHHHHH---H
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---------PERYVVGLE-----ISD----------------------IAIKKA---E  147 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---------~~~~v~~iD-----~s~----------------------~~i~~a---~  147 (231)
                      .-++.|+|+||-.|..+..++.         ...+++++|     +.+                      +.+...   .
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            3457999999999998877653         235899999     321                      111111   1


Q ss_pred             HHhccCCC-CCceEEEEccCCCC-------CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          148 ELSSSLPN-AKFVSFLKADFFTW-------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       148 ~~~~~~~~-~~~i~~~~~d~~~~-------~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++....+. .++++++.+++.+.       .+..+||+++.-.-.    .+.....+..+...|+|||++++-+|.
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            12223333 37899999999883       234579999965432    133356788999999999999987774

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.66  E-value=0.00072  Score=55.93  Aligned_cols=96  Identities=13%  Similarity=-0.012  Sum_probs=66.2

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCce
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~f  175 (231)
                      ..++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-..       .++...-.+       ......+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-------DIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-------EEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-------eEEcCCCcCHHHHHHHHcCCCCC
Confidence            34568999999886 788888877 777 899999999999988875321       222221111       1223479


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+|+....-        ...++...++|+|+|+++.+....
T Consensus       237 D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~~~  269 (352)
T 3fpc_A          237 DKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNYLG  269 (352)
T ss_dssp             EEEEECSSC--------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             CEEEECCCC--------hHHHHHHHHHHhcCCEEEEecccC
Confidence            999954332        124677889999999998776543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.63  E-value=0.0047  Score=51.17  Aligned_cols=98  Identities=14%  Similarity=0.030  Sum_probs=66.9

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEE-----ccCCC----CCCCC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-----ADFFT----WCPTE  173 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-----~d~~~----~~~~~  173 (231)
                      ..++.+||-+|+|. |..+..+++ .|.+ |+++|.+++..+.+++. ...    -+.+..     .++.+    .....
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----VVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----CEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----cccccccccchHHHHHHHHHHhCCC
Confidence            34568999999876 788888887 7875 99999999999999876 322    122221     11111    12234


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+|+|+....-        ...+....++|+++|++++.....
T Consensus       252 g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G~~~  286 (363)
T 3m6i_A          252 EPAVALECTGV--------ESSIAAAIWAVKFGGKVFVIGVGK  286 (363)
T ss_dssp             CCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECCCCC
T ss_pred             CCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEccCC
Confidence            79999964331        134678889999999998876543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.59  E-value=0.0082  Score=49.42  Aligned_cols=93  Identities=19%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..++.+||-+|+|. |..+..+++ .|.+|+++|.+++..+.+++.-.     +  .++ .+.... . ..+|+|+....
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~v~-~~~~~~-~-~~~D~vid~~g  243 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV-----K--HFY-TDPKQC-K-EELDFIISTIP  243 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC-----S--EEE-SSGGGC-C-SCEEEEEECCC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC-----C--eec-CCHHHH-h-cCCCEEEECCC
Confidence            34568999999976 788888887 88899999999999888876321     1  122 222222 2 27999996433


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      -.        ..+....++|+++|++++.....
T Consensus       244 ~~--------~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          244 TH--------YDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             SC--------CCHHHHHTTEEEEEEEEECCCCC
T ss_pred             cH--------HHHHHHHHHHhcCCEEEEECCCC
Confidence            22        12567889999999998875543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.56  E-value=0.0052  Score=50.35  Aligned_cols=66  Identities=17%  Similarity=-0.066  Sum_probs=52.3

Q ss_pred             CCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCC
Q 026903          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~  182 (231)
                      +.+++|+.||.|.+...+...|. .+.++|+++.+++..+.+....     .   .+|+.+....  ..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence            46999999999999999998888 5788999999999999987532     1   5777764321  2589999754

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.55  E-value=0.0018  Score=53.85  Aligned_cols=95  Identities=14%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCceeE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD~  177 (231)
                      .++.+||.+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-..       .++..+-.+.      ...+.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT-------HVINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC-------EEecCCccCHHHHHHHhcCCCCcE
Confidence            4568999999986 888888887 777 799999999999998765321       1222211110      01237999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+.....        ...++...++|+++|++++.....
T Consensus       262 vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~~~  292 (371)
T 1f8f_A          262 ALESTGS--------PEILKQGVDALGILGKIAVVGAPQ  292 (371)
T ss_dssp             EEECSCC--------HHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEeCCCC
Confidence            9954331        234678899999999998766543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.49  E-value=0.0085  Score=48.46  Aligned_cols=102  Identities=19%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CcEEEecCCCchHHHHhcC------CCC--eEEEEeCCh------------HHHHHHHHHhccC-CCCCceEEEEccCCC
Q 026903          110 GRALVPGCGTGYDVVAMAS------PER--YVVGLEISD------------IAIKKAEELSSSL-PNAKFVSFLKADFFT  168 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------~~~--~v~~iD~s~------------~~i~~a~~~~~~~-~~~~~i~~~~~d~~~  168 (231)
                      -+|||+|-|+|.+......      +..  +++.+|-.+            +..+...+..... ...-.+++..+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            5899999999997654321      233  677777522            1112222222111 111235678888877


Q ss_pred             CC---CCCceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEE
Q 026903          169 WC---PTELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       169 ~~---~~~~fD~i~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      ..   ....||+|+.-.+-..-.|+ =-..+++.++++++|||+|..
T Consensus       178 ~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            32   33479999965432222211 015689999999999998853

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.46  E-value=0.0052  Score=51.63  Aligned_cols=99  Identities=15%  Similarity=0.047  Sum_probs=65.8

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--------CCCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~~~  174 (231)
                      ..++.+||.+|||. |..+..+++ .|. +|+++|.+++.++.+++.    +    .+++...-.+.        .....
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G----FETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T----CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CcEEcCCCcchHHHHHHHHhCCCC
Confidence            34568999999987 888888887 787 899999999988888653    1    12232211111        11236


Q ss_pred             eeEEEeCCcccc---------cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCA---------IEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~---------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+|+....-..         .++   ...++...++|+++|+++++...
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETP---NGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCT---THHHHHHHHHEEEEEEEECCSCC
T ss_pred             CCEEEECCCCcccccccccccccc---HHHHHHHHHHHhcCCEEEEeccc
Confidence            999996543221         111   13477888999999998776543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.45  E-value=0.028  Score=39.74  Aligned_cols=93  Identities=17%  Similarity=0.049  Sum_probs=60.9

Q ss_pred             CcEEEecCCC-chH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--C---CCCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C---PTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~---~~~~fD~i~~~~  182 (231)
                      .+|+-+|||. |.. +..|.+.|..|+++|.+++.++.+++.        .+.++.+|..+.  .   .-..+|+|++..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER--------GVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--------CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            5899999975 433 333344889999999999998877652        267888998772  1   124688887432


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                           +.+.....+....+.+.|+..++.....
T Consensus        80 -----~~~~~n~~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           80 -----PNGYEAGEIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             -----SCHHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred             -----CChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence                 2222233344566677888887765543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.36  E-value=0.0029  Score=52.72  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC---C---CCCC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---W---CPTE  173 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~---~---~~~~  173 (231)
                      ..++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-..       .++..   |+.+   -   ...+
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT-------ATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------EEECTTSSCHHHHHHSTTSSSTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------EEECCCCcCHHHHHHhhhhccCC
Confidence            44668999999876 777888877 788 899999999999988875321       12211   1111   0   1123


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+|+|+....-        ...+..+.++|++||+++++....
T Consensus       253 g~Dvvid~~G~--------~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          253 GVDVVIECAGV--------AETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             CEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             CCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEeccC
Confidence            79999954321        235778889999999998766543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.31  E-value=0.0043  Score=51.67  Aligned_cols=93  Identities=22%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCCCCCCCceeEEEe
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWCPTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~~~fD~i~~  180 (231)
                      ..++.+||-+|+|. |..+..+++ .|.+|+++|.+++.++.+++.-.     +  .++..   +...... ..+|+|+.
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~-~g~Dvvid  263 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-----D--EVVNSRNADEMAAHL-KSFDFILN  263 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-----S--EEEETTCHHHHHTTT-TCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----c--EEeccccHHHHHHhh-cCCCEEEE
Confidence            34568999999985 777888877 88899999999999888876321     1  12221   1111111 47999996


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ...-..        .++...++|+++|+++....
T Consensus       264 ~~g~~~--------~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          264 TVAAPH--------NLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             CCSSCC--------CHHHHHTTEEEEEEEEECCC
T ss_pred             CCCCHH--------HHHHHHHHhccCCEEEEecc
Confidence            543221        25667899999999877654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.27  E-value=0.0026  Score=52.62  Aligned_cols=93  Identities=19%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc------CCC----CCCC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD------FFT----WCPT  172 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~----~~~~  172 (231)
                      ..++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+.+++.-.     +  .++..+      +.+    ... 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~~i~~~~~-  240 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-----D--LVLQISKESPQEIARKVEGQLG-  240 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----S--EEEECSSCCHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-----C--EEEcCcccccchHHHHHHHHhC-
Confidence            34568999999986 788888887 788 89999999998888876321     1  222211      111    111 


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..+|+|+....-        ...+....++|+++|+++.+..
T Consensus       241 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          241 CKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEec
Confidence            469999954321        1246778899999999987654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.24  E-value=0.0015  Score=53.70  Aligned_cols=95  Identities=15%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEE
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i  178 (231)
                      ..++.+||-.|+|. |..+..+++ .|.+|+++|.+++..+.+++.-..       .++...-.+..     ..+.+|+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE-------VAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC-------EEEeCCCcCHHHHHHHhCCCCCEE
Confidence            34568999999986 888888887 888999999999999988764311       12222111110     11368998


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +....-        ...++.+.++|+++|++++....
T Consensus       237 id~~g~--------~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          237 LVTAVS--------PKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             EESSCC--------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EEeCCC--------HHHHHHHHHHhccCCEEEEeCCC
Confidence            854321        23577888999999999876543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.23  E-value=0.0038  Score=52.62  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=61.9

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-..       .++..+-.+       ......+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-------HVIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------EEECTTTSCHHHHHHHHTTTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------EEEcCCCCCHHHHHHHHhCCCCCC
Confidence            4568999999875 777777777 788 999999999999998875321       122211111       12234799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+....-..   .....+++.+.++++++|+++++...
T Consensus       285 ~vid~~g~~~---~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          285 LFLEATGVPQ---LVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             EEEECSSCHH---HHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             EEEECCCCcH---HHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            9995432210   12222333333555999999886553

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.22  E-value=0.0016  Score=54.07  Aligned_cols=94  Identities=16%  Similarity=0.035  Sum_probs=65.3

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~  177 (231)
                      .++.+||-+|+|. |..+..+++ .|.+|+++|.+++.++.+++.-..       .++..+-.+       ......+|+
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~v~~~~~g~g~D~  260 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD-------HGINRLEEDWVERVYALTGDRGADH  260 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC-------EEEcCCcccHHHHHHHHhCCCCceE
Confidence            3568999999876 777777777 888999999999999988764321       222222112       112347999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+....-         ..+....++|+++|.++++....
T Consensus       261 vid~~g~---------~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          261 ILEIAGG---------AGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             EEEETTS---------SCHHHHHHHEEEEEEEEEECCCS
T ss_pred             EEECCCh---------HHHHHHHHHhhcCCEEEEEecCC
Confidence            9965431         13567888999999998876544

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.21  E-value=0.0071  Score=51.16  Aligned_cols=62  Identities=10%  Similarity=0.032  Sum_probs=47.7

Q ss_pred             CCCCcEEEecCCCchHHHHhc-C-CC--CeEEEEeCChHHHHHHHHHhcc--CCCC-CceEEEEccCCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMA-S-PE--RYVVGLEISDIAIKKAEELSSS--LPNA-KFVSFLKADFFT  168 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~-~-~~--~~v~~iD~s~~~i~~a~~~~~~--~~~~-~~i~~~~~d~~~  168 (231)
                      .++..++|+|++.|.++..++ + .+  .+|+++|+++...+..+++...  ++.. +++++++.-+.+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            355899999999999999887 3 22  5899999999999999998876  2223 567766654443

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.18  E-value=0.026  Score=45.96  Aligned_cols=65  Identities=15%  Similarity=0.027  Sum_probs=52.2

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeC
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDY  181 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~  181 (231)
                      ++|||+.||.|.+..-|.+.|. .+.++|+++.+++.-+.+..       -.++.+|+.+....  ..+|+++..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEec
Confidence            4799999999999999988888 56799999999998888763       25678898884322  368998864

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.0049  Score=50.88  Aligned_cols=94  Identities=18%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----CCC-C---CC---C
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----FFT-W---CP---T  172 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~-~---~~---~  172 (231)
                      ..++.+||-+|+|. |..+..+++ .|.+|+++|.+++..+.+++.-.     +  .++..+    +.+ .   ..   .
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA-----D--VTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-----S--EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC-----C--EEEcCcccccHHHHHHHHhccccC
Confidence            34568999999875 777778777 88899999999999988875321     1  122211    111 0   11   2


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..+|+|+.....        ...++...++|+++|+++....
T Consensus       239 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          239 DLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            469999954331        1246778899999999887654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.02  E-value=0.0034  Score=47.21  Aligned_cols=91  Identities=20%  Similarity=0.145  Sum_probs=59.5

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---------CCCCCc
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~~~  174 (231)
                      .++.+||..|+  |.|..+..+++ .|.+|+++|.+++..+.+++.    +. +  ..+  |..+         ......
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~-~--~~~--d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV-E--YVG--DSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC-S--EEE--ETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC-C--EEe--eCCcHHHHHHHHHHhCCCC
Confidence            35689999995  44666666655 788999999999887766542    11 1  112  2221         112246


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+++.+..     .    ..++.+.++|+|+|+++.....
T Consensus       108 ~D~vi~~~g-----~----~~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          108 VDVVLNSLA-----G----EAIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEEEECCC-----T----HHHHHHHHTEEEEEEEEECSCG
T ss_pred             CeEEEECCc-----h----HHHHHHHHHhccCCEEEEEcCC
Confidence            999996542     1    2467888999999998876543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.94  E-value=0.027  Score=47.15  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--------CCCCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~~~  174 (231)
                      ..++.+||-+|+|. |..+..+++ .|. .|+++|.+++.++.+++.-        .+.+...-.+        ......
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG--------a~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC--------CcEEccCCcchHHHHHHHHhCCCC
Confidence            34568999999876 888888887 787 7999999999999887632        1222211111        111236


Q ss_pred             eeEEEeCCccc----------ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFC----------AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~----------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+|+....-.          +..+   ...+....++|+++|++++....
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCEEEECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEeccc
Confidence            99999754321          1111   23577888999999999776543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.88  E-value=0.12  Score=40.66  Aligned_cols=81  Identities=14%  Similarity=-0.009  Sum_probs=54.4

Q ss_pred             CcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ++||-.|+  |..+..++    +.|.+|++++.++........        .+++++.+|+.++. -..+|+|+......
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-CTTCCEEEECCCCB
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-cCCCCEEEECCCcc
Confidence            58999995  76655554    478999999998865544332        24899999998855 56789999776544


Q ss_pred             ccChHHHHHHHHHHHh
Q 026903          186 AIEPEMRAAWAQKIKD  201 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~  201 (231)
                      .........+++.+.+
T Consensus        75 ~~~~~~~~~l~~a~~~   90 (286)
T 3ius_A           75 SGGDPVLAALGDQIAA   90 (286)
T ss_dssp             TTBCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHh
Confidence            3322333444444444

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.86  E-value=0.0029  Score=52.13  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~  177 (231)
                      ++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-..       .++..+-.+       ......+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~-------~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD-------YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS-------EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-------EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            678999999964 777777776 788 999999999988888764311       122211111       112236999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+.....        ...++.+.++|+++|+++.....
T Consensus       240 vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          240 FLEFSGA--------PKALEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             EEECSCC--------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEEccC
Confidence            9964332        23467888999999998776543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.79  E-value=0.0025  Score=52.51  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-C--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE----ccCCC-CCCCCceeEE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK----ADFFT-WCPTELFDLI  178 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~----~d~~~-~~~~~~fD~i  178 (231)
                      ++.+||-+|+|. |..+..+++ .  |.+|+++|.+++.++.+++.-..       .++.    .+... ......+|+|
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~~~~~g~g~D~v  242 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-------YVSEMKDAESLINKLTDGLGASIA  242 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-------EEECHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-------EEeccccchHHHHHhhcCCCccEE
Confidence            778999999975 777777777 5  89999999999999988764311       1221    11111 1122379999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +....-        ...++...++|+++|+++.+...
T Consensus       243 id~~g~--------~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          243 IDLVGT--------EETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             EESSCC--------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EECCCC--------hHHHHHHHHHhhcCCEEEEeCCC
Confidence            964332        12467888999999998876553

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.78  E-value=0.0049  Score=51.49  Aligned_cols=94  Identities=18%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc------CCC----CCCCC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD------FFT----WCPTE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~----~~~~~  173 (231)
                      .++.+||-+|+|. |..+..+++ .| .+|++++.+++.++.+++.-.     +  .++..+      +.+    .....
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-----D--LTLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-----S--EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC-----c--EEEeccccCcchHHHHHHHHhCCC
Confidence            3568999999775 777778877 78 599999999999988875321     1  222221      111    12233


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .+|+|+......        ..+....++|+++|+++.+...
T Consensus       267 g~Dvvid~~g~~--------~~~~~~~~~l~~~G~iv~~G~~  300 (380)
T 1vj0_A          267 GADFILEATGDS--------RALLEGSELLRRGGFYSVAGVA  300 (380)
T ss_dssp             CEEEEEECSSCT--------THHHHHHHHEEEEEEEEECCCC
T ss_pred             CCcEEEECCCCH--------HHHHHHHHHHhcCCEEEEEecC
Confidence            699999643321        2367788999999998876554

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=95.75  E-value=0.17  Score=41.45  Aligned_cols=105  Identities=12%  Similarity=0.130  Sum_probs=73.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCC----------------------CCCceEEE
Q 026903          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLP----------------------NAKFVSFL  162 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~----------------------~~~~i~~~  162 (231)
                      +...|+.+|||.-.....+...   +..++=+|. |+.++.=++.+...+                      -.++.+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            3478999999998777777653   457888888 555554333332100                      13578899


Q ss_pred             EccCCCC-----------CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          163 KADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       163 ~~d~~~~-----------~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+|+.+.           +.....-++++-.++.+++++...++|+.+.+...+ |.+++.+.
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~-~~~i~yE~  230 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER-AMFINYEQ  230 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEE
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC-ceEEEEec
Confidence            9999871           233456788889999999999999999999988755 55545444

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.69  E-value=0.021  Score=45.99  Aligned_cols=68  Identities=13%  Similarity=0.032  Sum_probs=53.8

Q ss_pred             CCcEEEecCCCchHHHHhcCCCCe---EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-----CceeEEEe
Q 026903          109 KGRALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-----ELFDLIFD  180 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~~---v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~fD~i~~  180 (231)
                      +.+++|+.||.|.+...+.+.|.+   |.++|+++.+++..+.+..      ...++.+|+.+....     ..+|+++.
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll~g   89 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLVIG   89 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEEEe
Confidence            469999999999999999888874   5899999999988877753      245788898885321     36899997


Q ss_pred             CC
Q 026903          181 YT  182 (231)
Q Consensus       181 ~~  182 (231)
                      ..
T Consensus        90 gp   91 (295)
T 2qrv_A           90 GS   91 (295)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.69  E-value=0.16  Score=35.51  Aligned_cols=93  Identities=15%  Similarity=-0.010  Sum_probs=57.3

Q ss_pred             CCcEEEecCCC-ch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeC
Q 026903          109 KGRALVPGCGT-GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (231)
Q Consensus       109 ~~~vLDiGcG~-G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~  181 (231)
                      ..+|+-+|||. |. .+..|.+.|..|+++|.+++.++.+++.        .+.++.+|..+..     .-..+|+|+..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            35899999864 32 2333444889999999999988777652        2578889988721     12468988853


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..     +......+....+.+. ...++.....
T Consensus        78 ~~-----~~~~n~~~~~~a~~~~-~~~iia~~~~  105 (141)
T 3llv_A           78 GS-----DDEFNLKILKALRSVS-DVYAIVRVSS  105 (141)
T ss_dssp             CS-----CHHHHHHHHHHHHHHC-CCCEEEEESC
T ss_pred             cC-----CHHHHHHHHHHHHHhC-CceEEEEEcC
Confidence            32     1222333444555555 5556554443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.65  E-value=0.012  Score=47.65  Aligned_cols=87  Identities=17%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .++.+||-.|+|. |..+..+++ .|.+|++++ +++..+.+++.-..       .++ .| .+.. ...+|+|+....-
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~-------~v~-~d-~~~v-~~g~Dvv~d~~g~  209 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVR-------HLY-RE-PSQV-TQKYFAIFDAVNS  209 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEE-------EEE-SS-GGGC-CSCEEEEECC---
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCC-------EEE-cC-HHHh-CCCccEEEECCCc
Confidence            4568999999974 788888887 788999999 99888888774321       122 24 2222 5689999953221


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .         .+....++|+++|+++.+.
T Consensus       210 ~---------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          210 Q---------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------TTGGGEEEEEEEEEEC
T ss_pred             h---------hHHHHHHHhcCCCEEEEEe
Confidence            1         1355789999999988774

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.63  E-value=0.0034  Score=51.53  Aligned_cols=94  Identities=13%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             CCCCcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+|  .|..+..+++ .|.+|+++|.+++.++.+++.-..       ..+...-.+       ......+|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~-------~~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA-------YVIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc-------EEEeCCcccHHHHHHHHhCCCCCc
Confidence            456899999997  4777777777 788999999999988888874311       122221111       12234799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+....-     +.    +....++|+++|+++++....
T Consensus       216 vvid~~g~-----~~----~~~~~~~l~~~G~iv~~G~~~  246 (340)
T 3gms_A          216 AAIDSIGG-----PD----GNELAFSLRPNGHFLTIGLLS  246 (340)
T ss_dssp             EEEESSCH-----HH----HHHHHHTEEEEEEEEECCCTT
T ss_pred             EEEECCCC-----hh----HHHHHHHhcCCCEEEEEeecC
Confidence            99964332     11    233448999999998876543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.57  E-value=0.18  Score=39.46  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=69.9

Q ss_pred             CCCCcEEEecCC--Cc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          107 LPKGRALVPGCG--TG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG--~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      +.++++|-.|++  .|   ..+..|++.|.+|+.++.++...+.+.+.....+ ..++.++.+|+.+...          
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            456789999976  33   3456667799999999988766666555544432 1268999999988321          


Q ss_pred             -CCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026903          172 -TELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~  213 (231)
                       -+.+|+++.+.....          .+.+...           .+++.+...|+++|.++.+.
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence             136899988754332          2223222           35567777888888877655

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.57  E-value=0.0034  Score=52.38  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc--CCCC------CCCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFTW------CPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d--~~~~------~~~~~f  175 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-.     +  .++...  -.+.      ...+.+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV-----N--EFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC-----C--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-----c--EEEccccCchhHHHHHHHhcCCCC
Confidence            3568999999975 788888887 777 89999999999888875321     1  122211  1110      112379


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      |+|+....-        ...++...++|++| |+++++....
T Consensus       265 D~vid~~g~--------~~~~~~~~~~l~~g~G~iv~~G~~~  298 (378)
T 3uko_A          265 DYSFECIGN--------VSVMRAALECCHKGWGTSVIVGVAA  298 (378)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             CEEEECCCC--------HHHHHHHHHHhhccCCEEEEEcccC
Confidence            999954331        23578889999997 9998876543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.54  E-value=0.16  Score=40.13  Aligned_cols=105  Identities=13%  Similarity=0.134  Sum_probs=69.1

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC------------hHHHHHHHHHhccCCCCCceEEEEccCCCCCC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s------------~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~  171 (231)
                      +.++++|--|++.|   ..+..|++.|.+|+.+|.+            .+.++.+.......+  .++.++.+|+.+...
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            45678999998776   3455666799999999987            666665555444332  468999999988321


Q ss_pred             -----------CCceeEEEeCCcccc----cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 -----------TELFDLIFDYTFFCA----IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 -----------~~~fD~i~~~~~~~~----~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                                 -+..|+++.+.....    .+.+..           ..+++.+...|+.+|.++.+.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence                       136899998765432    222322           244566677778888876543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.52  E-value=0.015  Score=47.75  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||..|+  |.|..+..+++ .|.+|++++.+++.++.+++.-.     +  .++...-.+       ......+|
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga-----~--~~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA-----D--ETVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC-----S--EEEETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC-----C--EEEcCCcccHHHHHHHHhCCCCce
Confidence            35689999998  56777777776 88899999999998888875321     1  122211111       11224799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+.... ..        .++.+.++|+++|+++.....
T Consensus       238 ~vi~~~g-~~--------~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          238 KVVDHTG-AL--------YFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             EEEESSC-SS--------SHHHHHHHEEEEEEEEESSCC
T ss_pred             EEEECCC-HH--------HHHHHHHhhccCCEEEEEecC
Confidence            9997654 21        357788999999998775543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.52  E-value=0.0051  Score=50.97  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCCCCCCCceeEEE
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFTWCPTELFDLIF  179 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~~~~~~~fD~i~  179 (231)
                      ..++.+||-+|+|. |..+..+++ .|.+|+++|.+++.++.+++.-.     +  .++..    ++.+... +.+|+|+
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~v~~~~~~~~~~~~~~-~~~D~vi  248 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA-----D--HYIATLEEGDWGEKYF-DTFDLIV  248 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC-----S--EEEEGGGTSCHHHHSC-SCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-----C--EEEcCcCchHHHHHhh-cCCCEEE
Confidence            34568999999865 777777777 78899999999998888876321     1  22222    1111111 4799999


Q ss_pred             eCCcc--cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFF--CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .....  ..        .++.+.++|+++|+++.....
T Consensus       249 d~~g~~~~~--------~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          249 VCASSLTDI--------DFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             ECCSCSTTC--------CTTTGGGGEEEEEEEEECCCC
T ss_pred             ECCCCCcHH--------HHHHHHHHhcCCCEEEEecCC
Confidence            65433  11        245678899999998876543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.45  E-value=0.0086  Score=49.20  Aligned_cols=96  Identities=16%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc--CCC----CCCCCcee
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d--~~~----~~~~~~fD  176 (231)
                      ..++.+||-+|+|. |..+..+++ . +.+|+++|.+++.++.+++.-.     +  .++..+  ..+    ......+|
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-----~--~~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-----D--AAVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-----S--EEEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-----C--EEEcCCCcHHHHHHHHhCCCCCe
Confidence            34568999999976 788888887 4 6799999999999998876431     1  122211  111    11123799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+....-        ...++...++|+++|+++++....
T Consensus       242 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G~~~  273 (345)
T 3jv7_A          242 AVFDFVGA--------QSTIDTAQQVVAVDGHISVVGIHA  273 (345)
T ss_dssp             EEEESSCC--------HHHHHHHHHHEEEEEEEEECSCCT
T ss_pred             EEEECCCC--------HHHHHHHHHHHhcCCEEEEECCCC
Confidence            99954321        235788899999999998876544

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.41  E-value=0.21  Score=39.80  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=69.0

Q ss_pred             CCCCCcEEEecCCCc-----hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---------
Q 026903          106 ALPKGRALVPGCGTG-----YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G-----~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------  171 (231)
                      .+.++++|-.|++.|     ..+..|++.|.+|+.++.++...+.+.+.....   .++.++.+|+.+...         
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHH
Confidence            355689999997633     345666779999999999976655555443332   247899999988210         


Q ss_pred             --CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 --TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 --~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                        -+..|+++.+.....          .+.++.           ..+++.+...|+.+|.++.+.
T Consensus       105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence              147899998765432          222222           245566677778888877654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=95.38  E-value=0.1  Score=40.72  Aligned_cols=102  Identities=15%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+...     .++.++.+|+.+...           -
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            45678999998776   3455566699999999999988777665542     358899999988321           1


Q ss_pred             CceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          173 ELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       173 ~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +..|+++.+.....      .++++.           ..+++.+...|+.+|.++.+.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            37999998754332      233322           234556666777788776543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.32  E-value=0.0049  Score=50.26  Aligned_cols=94  Identities=14%  Similarity=0.046  Sum_probs=64.0

Q ss_pred             CCCCcEEEec-CC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPG-CG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiG-cG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.| +| .|..+..+++ .|.+|++++.+++.++.+++.-..       ..+...-.+       ......+|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW-------ETIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC-------EEEeCCCccHHHHHHHHhCCCCce
Confidence            4568999999 33 4777777777 788999999999999988764311       122222111       12234799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+....-         ..+....++|+++|++++.....
T Consensus       212 vvid~~g~---------~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          212 VVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             EEEESSCG---------GGHHHHHTTEEEEEEEEECCCTT
T ss_pred             EEEECCCh---------HHHHHHHHHhcCCCEEEEEecCC
Confidence            99965442         13567889999999998876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.32  E-value=0.18  Score=37.07  Aligned_cols=93  Identities=14%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             CCcEEEecCCC-chHH-HHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C---CCCceeEEE
Q 026903          109 KGRALVPGCGT-GYDV-VAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C---PTELFDLIF  179 (231)
Q Consensus       109 ~~~vLDiGcG~-G~~~-~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~---~~~~fD~i~  179 (231)
                      +.+|+-+|||. |... ..|.+. |..|+++|.+++.++.+++.        .+.++.+|..+.   .   .-..+|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE--------GRNVISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT--------TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC--------CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence            46899999875 4333 333346 88999999999888776542        145667776651   1   124689888


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....     +......+-...+.+.|++.+++...
T Consensus       111 ~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          111 LAMP-----HHQGNQTALEQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             ECCS-----SHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             EeCC-----ChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            5321     12222233345566677887776543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.29  E-value=0.2  Score=39.18  Aligned_cols=77  Identities=14%  Similarity=0.000  Sum_probs=54.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      ...+++||-.|++.|   .++..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            345678998887765   3345555689999999999988877766554432  468899999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1368999987554

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.18  E-value=0.011  Score=48.32  Aligned_cols=93  Identities=17%  Similarity=0.075  Sum_probs=60.6

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCC------CCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTW------CPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~------~~~~~fD  176 (231)
                      .++.+||..||  |.|..+..+++ .|.+|+++|.+++.++.+++. ..     .. .+.. +..+.      ...+.+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g~-----~~-~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI-GF-----DA-AFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TC-----SE-EEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-CC-----cE-EEecCCHHHHHHHHHHHhCCCCe
Confidence            45689999998  45666666665 888999999999888887442 11     11 1111 10110      0124799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++.+..-         ..++...++|+++|+++++...
T Consensus       217 ~vi~~~g~---------~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          217 CYFDNVGG---------EFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             EEEESSCH---------HHHHHHHTTEEEEEEEEECCCC
T ss_pred             EEEECCCh---------HHHHHHHHHHhcCCEEEEEecc
Confidence            99865441         2367788999999999876543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.15  E-value=0.045  Score=45.10  Aligned_cols=88  Identities=26%  Similarity=0.275  Sum_probs=60.1

Q ss_pred             CcEEEecCCC-chHH-HHhc-C-CCCe-EEEEeCChH---HHHHHHHHhccCCCCCceEEEEccCCC--CCC----CCce
Q 026903          110 GRALVPGCGT-GYDV-VAMA-S-PERY-VVGLEISDI---AIKKAEELSSSLPNAKFVSFLKADFFT--WCP----TELF  175 (231)
Q Consensus       110 ~~vLDiGcG~-G~~~-~~l~-~-~~~~-v~~iD~s~~---~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~----~~~f  175 (231)
                      .+||-+|+|. |..+ ..++ + .|.+ |+++|.+++   ..+.+++.-        .+.+  |..+  ...    .+.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG--------a~~v--~~~~~~~~~i~~~~gg~  243 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD--------ATYV--DSRQTPVEDVPDVYEQM  243 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT--------CEEE--ETTTSCGGGHHHHSCCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC--------Cccc--CCCccCHHHHHHhCCCC
Confidence            7999999865 7888 8888 6 7776 999999988   788886532        1222  2211  100    1379


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+|+....-        ...++.+.++|+++|+++.+...
T Consensus       244 Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          244 DFIYEATGF--------PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             EEEEECSCC--------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CEEEECCCC--------hHHHHHHHHHHhcCCEEEEEeCC
Confidence            999854321        12467888999999998876554

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.15  E-value=0.02  Score=46.91  Aligned_cols=68  Identities=10%  Similarity=-0.076  Sum_probs=52.8

Q ss_pred             CCcEEEecCCCchHHHHhcCCCC---eE-EEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEe
Q 026903          109 KGRALVPGCGTGYDVVAMASPER---YV-VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD  180 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~---~v-~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~  180 (231)
                      ..+++|+.||.|.+...+...|.   .+ .++|+++.+++..+.|....       ++.+|+.+...    ...+|+++.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCCEEEe
Confidence            35999999999999999988773   56 69999999999999887431       56788877432    226899996


Q ss_pred             CCc
Q 026903          181 YTF  183 (231)
Q Consensus       181 ~~~  183 (231)
                      ...
T Consensus        83 gpP   85 (327)
T 3qv2_A           83 SPP   85 (327)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            544

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.13  E-value=0.24  Score=39.06  Aligned_cols=117  Identities=13%  Similarity=-0.020  Sum_probs=73.0

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC-hHHHHHHHHHhccCCCCCceEEEEccCCCCC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  170 (231)
                      +.....++....+.++++|-.|++.|   ..+..|++.|.+|+.++.. .+..+...+.+...+  .++.++.+|+.+..
T Consensus        17 ~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~   94 (271)
T 3v2g_A           17 NLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAE   94 (271)
T ss_dssp             ---CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             ccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHH
Confidence            34445555555677789999998876   3456666799999998765 344554444443332  46889999998832


Q ss_pred             C-----------CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 P-----------TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~-----------~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .           -+..|+++.+.....      .+.++.           ..+++.+...|+++|.++.+.
T Consensus        95 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A           95 AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            1           136899998754322      232222           245666777888888876654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.12  E-value=0.0068  Score=49.60  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=63.0

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|++++.+++.++.+++.-.     +  .++..+-.+       ......+|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-----~--~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA-----E--YLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----S--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----c--EEEeCCCchHHHHHHHHhCCCCce
Confidence            45689999994  34777777777 88899999999998888876321     1  222221122       11234799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+....-         ..++.+.++|+++|+++.+...
T Consensus       220 ~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          220 ASFDSVGK---------DTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             EEEECCGG---------GGHHHHHHHEEEEEEEEECCCT
T ss_pred             EEEECCCh---------HHHHHHHHHhccCCEEEEEcCC
Confidence            99965432         2367788899999999876654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.08  E-value=0.033  Score=45.61  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCce
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~f  175 (231)
                      ..++.+||-.|+|. |..+..+++ .|. .++++|.+++-++.+++.-..       ..+...-.+       ......+
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM-------QTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHGGGCSS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe-------EEEeCCCCCHHHHHHhhcccCCc
Confidence            45668999999976 566666666 676 578999999999988874321       222222111       1123468


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+|+....-        ...++...++|+++|.+++.....
T Consensus       231 d~v~d~~G~--------~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          231 QLILETAGV--------PQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             EEEEECSCS--------HHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             ccccccccc--------cchhhhhhheecCCeEEEEEeccC
Confidence            888854321        234677889999999998765543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.08  E-value=0.08  Score=43.27  Aligned_cols=94  Identities=15%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCCC---CCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFTW---CPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~~---~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|++++.+++.++.+++.+..    +  ..+..    ++.+.   .....+|
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~----~--~~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF----D--DAFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC----S--EEEETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC----c--eEEecCCHHHHHHHHHHHhCCCCc
Confidence            35689999997  45777777776 888999999999888887643321    1  12211    11110   0124699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+....-         ..++...++|+++|+++++...
T Consensus       228 ~vi~~~g~---------~~~~~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          228 IYFENVGG---------KMLDAVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             EEEESSCH---------HHHHHHHTTEEEEEEEEECCCG
T ss_pred             EEEECCCH---------HHHHHHHHHHhcCCEEEEEccc
Confidence            99865431         2467888999999999876554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.05  E-value=0.022  Score=45.86  Aligned_cols=56  Identities=13%  Similarity=0.182  Sum_probs=40.8

Q ss_pred             ceEEEEccCCCC---CCCCceeEEEeCCcccccCh------------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          158 FVSFLKADFFTW---CPTELFDLIFDYTFFCAIEP------------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       158 ~i~~~~~d~~~~---~~~~~fD~i~~~~~~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++.++++|..+.   .++++||+|+++..+.....                  .....+++++.++|+|||.+++..
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            578999999882   35679999999876642210                  112457789999999999987753

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.03  E-value=0.047  Score=44.69  Aligned_cols=98  Identities=13%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEE
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i  178 (231)
                      ..++.+||-+|+|. |..+..+++  .+.+|+++|.+++-++.+++.....    -+.....|..+    ......+|.+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~----~i~~~~~~~~~~v~~~t~g~g~d~~  236 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV----TINSGDVNPVDEIKKITGGLGVQSA  236 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE----EEEC-CCCHHHHHHHHTTSSCEEEE
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE----EEeCCCCCHHHHhhhhcCCCCceEE
Confidence            45678999999987 345555554  4679999999999888887654221    11111122221    1223357777


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +....-        ...+....+.|+++|.+++....
T Consensus       237 ~~~~~~--------~~~~~~~~~~l~~~G~~v~~g~~  265 (348)
T 4eez_A          237 IVCAVA--------RIAFEQAVASLKPMGKMVAVAVP  265 (348)
T ss_dssp             EECCSC--------HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEeccC--------cchhheeheeecCCceEEEEecc
Confidence            643221        23567888999999998876543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.02  E-value=0.0066  Score=50.48  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC----CCCCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT----WCPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~----~~~~~~  174 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-.     +  .++...     +.+    .. .+.
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~i~~~t-~gg  261 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-----T--ECLNPKDYDKPIYEVICEKT-NGG  261 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHT-TSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----c--EEEecccccchHHHHHHHHh-CCC
Confidence            4568999999875 777888877 777 89999999998888875321     1  122211     111    11 237


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (231)
                      +|+|+....-        ...++...++|+++ |+++.+...
T Consensus       262 ~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~~  295 (373)
T 1p0f_A          262 VDYAVECAGR--------IETMMNALQSTYCGSGVTVVLGLA  295 (373)
T ss_dssp             BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             CCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEccC
Confidence            9999954321        23467888999999 998876654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.01  E-value=0.056  Score=44.08  Aligned_cols=96  Identities=10%  Similarity=-0.044  Sum_probs=63.6

Q ss_pred             CCCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCcee
Q 026903          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD  176 (231)
                      ..++.+||-.|+  |.|..+..+++ .|.+|++++.+++.++.+.+.+..    +  ..+...-.+.      ...+.+|
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~----~--~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF----D--GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC----S--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC----C--EEEECCCHHHHHHHHHhcCCCce
Confidence            345689999998  34777777776 888999999999988887433321    1  1222111110      0134799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +++....-         ..+..+.++|+++|+++++....
T Consensus       221 ~vi~~~g~---------~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          221 VFFDNVGG---------EILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             EEEESSCH---------HHHHHHHTTEEEEEEEEECCCGG
T ss_pred             EEEECCCc---------chHHHHHHHHhhCCEEEEEeecc
Confidence            99864331         24778889999999998876544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.98  E-value=0.054  Score=44.36  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=62.1

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|++++.+++..+.+++.-.     +  .++..+ .+       ......+|
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-----~--~v~~~~-~~~~~~v~~~~~~~g~D  229 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA-----D--IVLPLE-EGWAKAVREATGGAGVD  229 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-----S--EEEESS-TTHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----c--EEecCc-hhHHHHHHHHhCCCCce
Confidence            35689999997  34778877777 88899999999998888877421     1  222222 22       12233799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+....-.         .+..+.++|+++|+++++....
T Consensus       230 vvid~~g~~---------~~~~~~~~l~~~G~iv~~G~~~  260 (342)
T 4eye_A          230 MVVDPIGGP---------AFDDAVRTLASEGRLLVVGFAA  260 (342)
T ss_dssp             EEEESCC-----------CHHHHHHTEEEEEEEEEC----
T ss_pred             EEEECCchh---------HHHHHHHhhcCCCEEEEEEccC
Confidence            999654421         3567889999999998876543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.97  E-value=0.025  Score=46.88  Aligned_cols=90  Identities=17%  Similarity=0.217  Sum_probs=61.1

Q ss_pred             CCCcEEEec-CCC-chHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc--cCCC---CCCCCceeEE
Q 026903          108 PKGRALVPG-CGT-GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLI  178 (231)
Q Consensus       108 ~~~~vLDiG-cG~-G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~--d~~~---~~~~~~fD~i  178 (231)
                      ++.+||-.| +|. |..+..+++  .|.+|+++|.+++-++.+++.-.     +  .++..  ++.+   -...+.+|+|
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa-----d--~vi~~~~~~~~~v~~~~~~g~Dvv  243 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA-----H--HVIDHSKPLAAEVAALGLGAPAFV  243 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC-----S--EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC-----C--EEEeCCCCHHHHHHHhcCCCceEE
Confidence            457899998 554 888888887  47799999999998888876321     1  11211  1111   1123479999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +....-        ...+..+.++|+++|+++++
T Consensus       244 id~~g~--------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          244 FSTTHT--------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EECSCH--------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EECCCc--------hhhHHHHHHHhcCCCEEEEE
Confidence            853221        23567888999999999876

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.95  E-value=0.014  Score=47.96  Aligned_cols=66  Identities=17%  Similarity=0.094  Sum_probs=51.7

Q ss_pred             CcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026903          110 GRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~  181 (231)
                      .+++|+.||.|.+...+...|.   .+.++|+++.+++.-+.|...      ..++.+|+.+...    ...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEec
Confidence            4899999999999999987664   578999999999998888743      3467788877432    2358999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.94  E-value=0.16  Score=42.85  Aligned_cols=94  Identities=12%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             CcEEEecCCC-chHHHH-hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYDVVA-MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~~~~-l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~~~  182 (231)
                      .+|+-+|+|. |..... |.+.|..|+++|.+++.++.+++.        .+.++.+|..+.     ..-..+|+|++..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~GDat~~~~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI   76 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence            5789999865 433332 333889999999999999888752        256788999882     1124688887432


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                           +++.....+....+.+.|+..+++-....
T Consensus        77 -----~~~~~n~~i~~~ar~~~p~~~Iiara~~~  105 (413)
T 3l9w_A           77 -----DDPQTNLQLTEMVKEHFPHLQIIARARDV  105 (413)
T ss_dssp             -----SSHHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred             -----CChHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence                 33444556677778888998887766543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.91  E-value=0.17  Score=39.49  Aligned_cols=105  Identities=17%  Similarity=0.069  Sum_probs=67.0

Q ss_pred             CCCCCcEEEecCC--Cc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---------
Q 026903          106 ALPKGRALVPGCG--TG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG--~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------  171 (231)
                      ..++++||-.|++  .|   ..+..|++.|.+|+.++.++...+.+.+.....+   ++.++.+|+.+...         
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHH
Confidence            4556899999975  33   2345556689999999988665555555443332   47889999988221         


Q ss_pred             --CCceeEEEeCCcccc-----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 --TELFDLIFDYTFFCA-----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 --~~~fD~i~~~~~~~~-----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                        -+..|+++.+.....           .+.+..           ..+++.+...|+++|.++.+.
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence              147899998755432           333322           234556666777788776654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.90  E-value=0.49  Score=37.09  Aligned_cols=107  Identities=19%  Similarity=0.070  Sum_probs=68.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC-hHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.++.. .+..+...+.+...+  .++.++.+|+.+...          
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345678999998766   3455666699999998764 555555544443332  468899999988321          


Q ss_pred             -CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026903          172 -TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                       -+..|+++.+.....      ++.++.           ..+++.+...|+.+|.++.+.-
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence             136899998754432      233322           2455677778888888766543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.89  E-value=0.014  Score=47.92  Aligned_cols=92  Identities=17%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CC---C--CCcee
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WC---P--TELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~---~--~~~fD  176 (231)
                      ..++.+||-+|+|. |..+..+++ .|.+|+++|.+++.++.+++.-.     +  .++  |..+  ..   .  .+.+|
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~~~--d~~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA-----D--LVV--NPLKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-----S--EEE--CTTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC-----C--EEe--cCCCccHHHHHHHHhCCCC
Confidence            34568999999864 777777776 78899999999999888875321     1  112  2221  00   0  04699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+.....        ...++...++|+++|+++....
T Consensus       233 ~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          233 AAVVTAVS--------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEEESSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCC--------HHHHHHHHHHhhcCCEEEEecc
Confidence            99864331        1346788899999999887654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.89  E-value=0.0036  Score=51.47  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C---CCCceeEE
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C---PTELFDLI  178 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~---~~~~fD~i  178 (231)
                      ++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++. .     +  .++..+-.+.   .   ....+|+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhcCCCCCEE
Confidence            678999999864 777777777 788 899999999877766543 1     1  1221111110   0   03469999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +....-        ...++...++|+++|+++....
T Consensus       236 id~~g~--------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          236 LEFSGN--------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            954331        2346788899999999887654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.87  E-value=0.33  Score=38.59  Aligned_cols=105  Identities=12%  Similarity=0.070  Sum_probs=67.1

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH-HHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~-~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.++.++. ..+...+.....+  .++.++.+|+.+...          
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            345678999998776   345566669999999998865 3344444333332  468999999988321          


Q ss_pred             -CCceeEEEeCCcccc-------cChHHH-----------HHHHHHHHhhcCCCcEEEEE
Q 026903          172 -TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~  212 (231)
                       -+..|+++.+.....       ++.++.           ..+++.+...|+.+|.++.+
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence             136899998744321       233322           24556677778888877654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.87  E-value=0.0077  Score=50.11  Aligned_cols=94  Identities=12%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCCCC---CCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFTWC---PTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~~~---~~~~f  175 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-.     +  .++...     +.+..   ..+.+
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-----T--DFVNPNDHSEPISQVLSKMTNGGV  263 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----C--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-----c--eEEeccccchhHHHHHHHHhCCCC
Confidence            4568999999875 777778877 787 89999999999888875321     1  122211     11100   11379


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (231)
                      |+|+.....        ...++.+.++|+++ |+++++...
T Consensus       264 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          264 DFSLECVGN--------VGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEcCC
Confidence            999854321        23467888999999 998876543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.87  E-value=0.025  Score=46.51  Aligned_cols=90  Identities=18%  Similarity=0.238  Sum_probs=60.1

Q ss_pred             CCCcEEEe-cCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc--cCCC---CCCCCceeEEE
Q 026903          108 PKGRALVP-GCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLIF  179 (231)
Q Consensus       108 ~~~~vLDi-GcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~--d~~~---~~~~~~fD~i~  179 (231)
                      ++.+||-. |+|. |..+..+++ .|.+|++++.+++.++.+++.-..       .++..  ++.+   -.....+|+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD-------IVLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS-------EEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc-------EEEECCccHHHHHHHhCCCCccEEE
Confidence            56899999 4554 777777777 888999999999999988874311       11211  1111   01234799999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ....-        ...+..+.++|+++|+++..
T Consensus       223 d~~g~--------~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          223 CTFNT--------DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             ESSCH--------HHHHHHHHHHEEEEEEEEES
T ss_pred             ECCCc--------hHHHHHHHHHhccCCEEEEE
Confidence            53221        23567888999999998654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.85  E-value=0.3  Score=38.37  Aligned_cols=77  Identities=14%  Similarity=0.053  Sum_probs=57.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .+.++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            467788898888877   3456667799999999999998877766665543  46888999998821           1


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -++.|+++.+...
T Consensus        84 ~G~iDiLVNNAG~   96 (255)
T 4g81_D           84 GIHVDILINNAGI   96 (255)
T ss_dssp             TCCCCEEEECCCC
T ss_pred             CCCCcEEEECCCC
Confidence            2579999987543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.80  E-value=0.0091  Score=53.89  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=63.1

Q ss_pred             CcEEEecCCCchHHHHhcC------------CC--CeEEEEeC---ChHHHHHHHH-----------HhccCC-------
Q 026903          110 GRALVPGCGTGYDVVAMAS------------PE--RYVVGLEI---SDIAIKKAEE-----------LSSSLP-------  154 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------------~~--~~v~~iD~---s~~~i~~a~~-----------~~~~~~-------  154 (231)
                      -+|+|+|.|+|.+.+.+.+            +.  .+++++|.   +.+.+..+-.           .....+       
T Consensus        60 ~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  139 (689)
T 3pvc_A           60 CIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCH  139 (689)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEE
T ss_pred             eEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCce
Confidence            5999999999998876644            11  47999998   4444443221           111111       


Q ss_pred             ---CC---CceEEEEccCCCCCC------CCceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEE
Q 026903          155 ---NA---KFVSFLKADFFTWCP------TELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       155 ---~~---~~i~~~~~d~~~~~~------~~~fD~i~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~  211 (231)
                         +.   -.+++..+|+.+..+      ...+|.||.-.+-....++ =...++..+.++++|||.+..
T Consensus       140 r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          140 RILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             EEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence               11   256778888877322      3579999975432221111 014678899999999998754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.77  E-value=0.01  Score=49.29  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=62.8

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC-C--CCCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT-W--CPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~-~--~~~~~f  175 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-.     +  .++...     +.+ .  ...+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-----T--ECVNPQDYKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----c--eEecccccchhHHHHHHHHhCCCC
Confidence            3568999999876 777777777 787 89999999998888875321     1  122211     111 0  012379


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (231)
                      |+|+....-        ...++...++|+++ |+++++...
T Consensus       263 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~~  295 (374)
T 2jhf_A          263 DFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVGVP  295 (374)
T ss_dssp             SEEEECSCC--------HHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             cEEEECCCC--------HHHHHHHHHHhhcCCcEEEEeccC
Confidence            999854321        23467888999999 998876543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=94.74  E-value=0.24  Score=38.69  Aligned_cols=106  Identities=13%  Similarity=0.037  Sum_probs=68.1

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEE-eCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~i-D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.+ +.+++..+...+.+...+  .++.++.+|+.+...          
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345678999998776   3455666689999888 777776666655554432  468899999988321          


Q ss_pred             -CCceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 -TELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 -~~~fD~i~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       -+..|+++.+....       ..+.+..           ..+++.+...|+++|.++.+.
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence             13789999875432       1222222           244556666777777776543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.74  E-value=0.0085  Score=49.88  Aligned_cols=93  Identities=16%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCCCC---CCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFTWC---PTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~~~---~~~~f  175 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++.-.     +  .++...     +.+..   ..+.+
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----T--DCLNPRELDKPVQDVITELTAGGV  266 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----c--EEEccccccchHHHHHHHHhCCCc
Confidence            3568999999875 777788877 787 89999999998888875321     1  122111     11100   11379


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (231)
                      |+|+....-        ...++...++|+++ |+++++..
T Consensus       267 Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          267 DYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SEEEESSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cEEEECCCC--------HHHHHHHHHHhhcCCCEEEEECC
Confidence            999854321        23467889999999 99887654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.72  E-value=0.0094  Score=49.52  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC-C--CCCCce
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT-W--CPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~-~--~~~~~f  175 (231)
                      .++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+.+++.-..       .++...     +.+ .  ...+.+
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-------eEeccccccccHHHHHHHHhCCCC
Confidence            4568999999875 777777777 777 899999999999888764321       122211     111 0  012379


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      |+|+....-        ...++...++|+++ |+++++....
T Consensus       262 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~~~  295 (373)
T 2fzw_A          262 DYSFECIGN--------VKVMRAALEACHKGWGVSVVVGVAA  295 (373)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             CEEEECCCc--------HHHHHHHHHhhccCCcEEEEEecCC
Confidence            999854321        23467888999999 9988766543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.66  E-value=0.034  Score=45.10  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             cEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCCCCceeEEEeCCccc
Q 026903          111 RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       111 ~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~fD~i~~~~~~~  185 (231)
                      .||-.|+  |.|..+..+++ .|.+|++++.+++-.+.+++.-..      ..+-..+...  ....+.+|+|+....  
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~~~~~~d~v~d~~g--  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN------RILSRDEFAESRPLEKQLWAGAIDTVG--  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS------EEEEGGGSSCCCSSCCCCEEEEEESSC--
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------EEEecCCHHHHHhhcCCCccEEEECCC--
Confidence            5999997  34888888887 888999999999999988774311      1111111111  112347999885322  


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                         .    ..+....++|+++|+++.+...
T Consensus       221 ---~----~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          221 ---D----KVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             ---H----HHHHHHHHTEEEEEEEEECCCT
T ss_pred             ---c----HHHHHHHHHHhcCCEEEEEecC
Confidence               1    2578889999999999876544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.61  E-value=0.69  Score=31.79  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             CcEEEecCCC-chH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~~~  182 (231)
                      ++|+-+|+|. |.. +..|.+.|..|+.+|.+++.++...+..       .+.++.+|..+.     ..-..+|+|+...
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence            5788888854 322 2334447889999999998776655432       245677776551     1124689988542


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .     .......+..+.+.+.++ .+++..
T Consensus        78 ~-----~~~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           78 G-----KEEVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             S-----CHHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             C-----CchHHHHHHHHHHHcCCC-EEEEEe
Confidence            2     222233455566667775 454443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.56  E-value=0.27  Score=39.40  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=56.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.+++||-.|++.|   .++..|++.|.+|+.++.++..++...+.+...+  .++.++.+|+.+...           -
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            45678999998876   3455666689999999999988887766654432  468999999998321           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            368999987554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.53  E-value=0.47  Score=33.66  Aligned_cols=96  Identities=11%  Similarity=0.044  Sum_probs=59.8

Q ss_pred             CCcEEEecCCCchHHHHhc----CCCCeEEEEeCC-hHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEE
Q 026903          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLI  178 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i  178 (231)
                      ..+|+-+|+|  ..+..++    +.|..|+.+|.+ ++.++...+...     ..+.++.+|..+..     .-..+|+|
T Consensus         3 ~~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence            3578888875  4444443    478899999997 454544443321     23788999987721     12468888


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++..     +++.....+....+.+.|...+++....+
T Consensus        76 i~~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           76 LALS-----DNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EECS-----SCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEec-----CChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            8532     22344456666777777877777655443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.52  E-value=0.12  Score=41.81  Aligned_cols=93  Identities=12%  Similarity=0.059  Sum_probs=61.2

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|+++|.+++.++.+++.-.     +  ..+...-.+       ......+|
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA-----W--QVINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-----C--EEEECCCccHHHHHHHHhCCCCce
Confidence            35689999994  44666666665 78899999999988888876321     1  122211111       11124699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++.+.. .        ..++.+.++|+++|+++.....
T Consensus       212 ~vi~~~g-~--------~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          212 VVYDSVG-R--------DTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             EEEECSC-G--------GGHHHHHHTEEEEEEEEECCCT
T ss_pred             EEEECCc-h--------HHHHHHHHHhcCCCEEEEEecC
Confidence            9996654 1        2367788999999998876543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.51  E-value=0.15  Score=41.29  Aligned_cols=87  Identities=17%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             CcEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          110 GRALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      .+|.-||+|.  +.++..+.+.|.  +|+++|.+++.++.+.+.-    .   +.-...+..+ ..  ...|+|+..   
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G----~---~~~~~~~~~~~~~--~~aDvVila---  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----I---IDEGTTSIAKVED--FSPDFVMLS---  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----S---CSEEESCTTGGGG--GCCSEEEEC---
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC----C---cchhcCCHHHHhh--ccCCEEEEe---
Confidence            6899999886  345666666887  9999999999888776531    1   1112233333 22  357988843   


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                        +++.....+++.+...++++.+++
T Consensus       102 --vp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A          102 --SPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             --SCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             --CCHHHHHHHHHHHhhccCCCcEEE
Confidence              344455677888888899887654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.50  E-value=0.26  Score=39.14  Aligned_cols=102  Identities=14%  Similarity=0.016  Sum_probs=70.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++.+|--|++.|   ..+..|++.|++|+.+|.+++.++.+.+.+.     .++.++.+|+.+...           
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-----GGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            467789999998887   3466667799999999999998887765542     347788999988221           


Q ss_pred             CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEE
Q 026903          172 TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~  212 (231)
                      -++.|+++.+.....      +++++.           ....+.+...|+.+|.++..
T Consensus       101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            147999998754322      333322           34456666788888876654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.50  E-value=0.33  Score=39.20  Aligned_cols=78  Identities=15%  Similarity=0.022  Sum_probs=55.8

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.+++||-.|++.|   .++..|++.|.+|++++.++..++...+.+...+...++.++.+|+.+..           .-
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45578999998776   34555666899999999999888776665543322236899999998821           01


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478999987654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.40  E-value=0.073  Score=43.99  Aligned_cols=90  Identities=19%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             CCcEEEecCCC-chHHHHhcC-CCCeEEEEeCCh---HHHHHHHHHhccCCCCCceEEEEc-cCCCCC--CCCceeEEEe
Q 026903          109 KGRALVPGCGT-GYDVVAMAS-PERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKA-DFFTWC--PTELFDLIFD  180 (231)
Q Consensus       109 ~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~---~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~--~~~~fD~i~~  180 (231)
                      +.+||-+|+|. |..+..+++ .|.+|+++|.++   +..+.+++.-        .+.+.. ++.+..  ....+|+|+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g--------a~~v~~~~~~~~~~~~~~~~d~vid  252 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK--------TNYYNSSNGYDKLKDSVGKFDVIID  252 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT--------CEEEECTTCSHHHHHHHCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC--------CceechHHHHHHHHHhCCCCCEEEE
Confidence            78999999854 566666665 788999999998   7777776532        122211 111100  0146999996


Q ss_pred             CCcccccChHHHHHHH-HHHHhhcCCCcEEEEEEc
Q 026903          181 YTFFCAIEPEMRAAWA-QKIKDFLKPDGELITLMF  214 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~~  214 (231)
                      .....        ..+ +...+.|+++|.++....
T Consensus       253 ~~g~~--------~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          253 ATGAD--------VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCCCC--------THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCCh--------HHHHHHHHHHHhcCCEEEEEec
Confidence            54321        135 778899999999877654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.38  E-value=0.012  Score=48.65  Aligned_cols=93  Identities=15%  Similarity=0.101  Sum_probs=60.9

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|+++|.+++.++.+++.-.     +  ..+..+-.+       ......+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA-----A--AGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-----c--EEEecCChHHHHHHHHHhcCCCce
Confidence            35689999984  44676666666 88899999999998888855321     1  122211111       11224699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++....-.         .+....++|+++|.++++...
T Consensus       234 ~vi~~~G~~---------~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          234 LILDCIGGS---------YWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             EEEESSCGG---------GHHHHHHHEEEEEEEEECCCT
T ss_pred             EEEECCCch---------HHHHHHHhccCCCEEEEEecc
Confidence            999654421         256678899999998876643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.37  E-value=0.14  Score=42.27  Aligned_cols=94  Identities=20%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             CCCCCcEEEec--CCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCcee
Q 026903          106 ALPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiG--cG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD  176 (231)
                      ..++.+||-.|  .|.|..+..+++ .|.+|++++.+++.++.+++.-.     +  .++..+-.+.      .....+|
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga-----~--~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC-----D--RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----S--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC-----c--EEEecCChhHHHHHHHhcCCCCC
Confidence            34568999999  345888888877 78899999999988888876321     1  1222211110      0124699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+....-         ..++.+.++|+++|++++....
T Consensus       234 ~vid~~g~---------~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          234 VVYESVGG---------AMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             EEEECSCT---------HHHHHHHHHEEEEEEEEECCCG
T ss_pred             EEEECCCH---------HHHHHHHHHHhcCCEEEEEeCC
Confidence            99965431         2467888999999998876654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.35  E-value=0.02  Score=47.10  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCC---CC---C---CCCc
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---TW---C---PTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~---~---~~~~  174 (231)
                      .++.+||..|+  |.|..+..+++ .|.+|+++|.+++..+.+++.-    . +  .++  |..   +.   .   ..+.
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g----~-~--~~~--d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIG----G-E--VFI--DFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTT----C-C--EEE--ETTTCSCHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcC----C-c--eEE--ecCccHhHHHHHHHHhCCC
Confidence            45689999998  45777777766 8889999999988877776521    1 1  122  322   11   0   0126


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+|+.....        ...++.+.+.|+++|+++.+...
T Consensus       239 ~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          239 AHGVINVSVS--------EAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             EEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred             CCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeCC
Confidence            9999965432        23578889999999998876543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.35  E-value=0.022  Score=46.93  Aligned_cols=92  Identities=15%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|++++.+++.++.+++.-.     +  ..+..+-.+       ......+|
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-----~--~~~d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA-----H--EVFNHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----S--EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC-----C--EEEeCCCchHHHHHHHHcCCCCcE
Confidence            35689999997  44677776666 88899999999998887765321     1  122211111       11123699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +++....-         ..+....++|+++|+++++..
T Consensus       242 ~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          242 IIIEMLAN---------VNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             EEEESCHH---------HHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCh---------HHHHHHHHhccCCCEEEEEec
Confidence            99865331         235677899999999887653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.35  E-value=0.058  Score=46.50  Aligned_cols=56  Identities=14%  Similarity=-0.045  Sum_probs=45.5

Q ss_pred             CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      .+++|+.||.|.+..-+...|. .|.++|+++.+++.-+.+....   +...++.+|+.+
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~  145 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRD  145 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhh
Confidence            5899999999999999998887 5899999999998888876432   134567788776

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.34  E-value=0.036  Score=45.74  Aligned_cols=93  Identities=19%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-C-CCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W-CPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~fD~i~~~~~  183 (231)
                      ++.+||-+|+|. |..+..+++ .|.+|+++|.+++..+.+++.+..    +.  ++..+-.+ . ...+.+|+|+....
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa----~~--vi~~~~~~~~~~~~~g~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGA----DD--YVIGSDQAKMSELADSLDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCC----SC--EEETTCHHHHHHSTTTEEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCC----ce--eeccccHHHHHHhcCCCCEEEECCC
Confidence            678999999875 677777776 788999999999887777633321    11  12111001 0 01136999996543


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      -..        .++...++|+++|+++....
T Consensus       254 ~~~--------~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          254 VHH--------ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             SCC--------CSHHHHTTEEEEEEEEECSC
T ss_pred             ChH--------HHHHHHHHhccCCEEEEeCC
Confidence            221        14567789999999887654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.31  E-value=0.11  Score=42.89  Aligned_cols=93  Identities=22%  Similarity=0.120  Sum_probs=59.5

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-C-CCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W-CPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~fD~i~~~~~  183 (231)
                      ++.+||-+|+|. |..+..+++ .|.+|++++.+++.++.+.+.+..    +  .++...-.+ . ...+.+|+|+....
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa----~--~v~~~~~~~~~~~~~~~~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA----D--SFLVSRDQEQMQAAAGTLDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC----S--EEEETTCHHHHHHTTTCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC----c--eEEeccCHHHHHHhhCCCCEEEECCC
Confidence            678999999865 667777776 788999999999887777643321    1  122111001 0 01136999996543


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ...        .++...++|+++|+++.+..
T Consensus       261 ~~~--------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          261 AVH--------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             SCC--------CSHHHHHHEEEEEEEEECCC
T ss_pred             cHH--------HHHHHHHHHhcCCEEEEEcc
Confidence            221        13556788999999877654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.25  E-value=0.077  Score=43.50  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCCCCcEEEecCC--CchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCc
Q 026903          106 ALPKGRALVPGCG--TGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG--~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~  174 (231)
                      ..++.+||..|+|  .|..+..+++ . |.+|+++|.+++.++.+++.-.     +  .++...-.+       ....+.
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-----D--YVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----C--EEecCCCccHHHHHHHHhcCCC
Confidence            3456899999998  4566666665 5 8999999999998888865321     1  122211111       111147


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+++....-        ...++...++|+++|+++.....
T Consensus       241 ~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          241 VDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             EEEEEESCCC--------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred             ceEEEECCCC--------HHHHHHHHHHHhcCCEEEEECCC
Confidence            9999965432        13467788999999998876543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.24  E-value=0.01  Score=47.85  Aligned_cols=91  Identities=15%  Similarity=0.092  Sum_probs=60.2

Q ss_pred             CCCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCCCCCCCceeEE
Q 026903          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFTWCPTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~~~~~~~fD~i  178 (231)
                      ..++.+||-.|+  |.|..+..+++ .|.+|++++.+++..+.+++.-.     +  ..+..    ++.+..  ..+|+|
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-----~--~~~~~~~~~~~~~~~--~~~d~v  193 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA-----E--EAATYAEVPERAKAW--GGLDLV  193 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC-----S--EEEEGGGHHHHHHHT--TSEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC-----C--EEEECCcchhHHHHh--cCceEE
Confidence            345689999998  34777777776 78899999999988888765321     1  12221    111111  479999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +. ..-         ..++...++|+++|+++.....
T Consensus       194 id-~g~---------~~~~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          194 LE-VRG---------KEVEESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             EE-CSC---------TTHHHHHTTEEEEEEEEEC---
T ss_pred             EE-CCH---------HHHHHHHHhhccCCEEEEEeCC
Confidence            96 332         1367788999999998876554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.15  E-value=0.01  Score=48.99  Aligned_cols=93  Identities=17%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------CCCceeE
Q 026903          107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------PTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~fD~  177 (231)
                      .++.+||-.|+ | .|..+..+++ .|.+|+++|.+++.++.+++.-..       .++..+-.+..      ....+|+
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~~~~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK-------RGINYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC-------EEEeCCchHHHHHHHHHhCCCceE
Confidence            35689999953 3 4777777777 888999999999999888774311       12222111110      1347999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+....-.         .+....++|+++|.++++...
T Consensus       239 vid~~g~~---------~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          239 ILDMIGAA---------YFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             EEESCCGG---------GHHHHHHTEEEEEEEEECCCT
T ss_pred             EEECCCHH---------HHHHHHHHhccCCEEEEEEec
Confidence            99654421         356788899999998876543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.13  E-value=0.38  Score=38.39  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      +.++++|-.|++.  |   ..+..|++.|.+|+.++.++...+...+.....+   ++.++.+|+.+...          
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            4567899999854  3   2456666799999999999765555444333222   36789999988321          


Q ss_pred             -CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 -TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       -+..|+++.+.....          .+.++.           ..+++.+...|+.+|.++.+.
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence             146899998765432          222222           245566667777888877654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.11  E-value=0.74  Score=36.21  Aligned_cols=79  Identities=11%  Similarity=0.024  Sum_probs=56.0

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEccCCCCCC----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d~~~~~~----------  171 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.+|.+++.++...+.+...+. ..++.++.+|+.+...          
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            355678999998765   34556667999999999999888777665544321 1268899999988321          


Q ss_pred             -CCceeEEEeCCcc
Q 026903          172 -TELFDLIFDYTFF  184 (231)
Q Consensus       172 -~~~fD~i~~~~~~  184 (231)
                       -+..|+++.+...
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             1368999987553

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.07  E-value=0.017  Score=47.21  Aligned_cols=93  Identities=19%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|+++|.+++.++.+++.-.     +  ..+..+-.+       ......+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~-----~--~~~d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC-----H--HTINYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----C--EEEECCCHHHHHHHHHHhCCCCCe
Confidence            35689999995  55777777766 88899999999988888866321     1  122211111       11124699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +++....-         ..++.+.++|+++|+++.....
T Consensus       217 ~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          217 VVYDSIGK---------DTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             EEEECSCT---------TTHHHHHHTEEEEEEEEECCCT
T ss_pred             EEEECCcH---------HHHHHHHHhhccCCEEEEEecC
Confidence            99965432         2367788999999998876554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.01  E-value=0.049  Score=48.97  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=63.9

Q ss_pred             CcEEEecCCCchHHHHhcC------------CC--CeEEEEeC---ChHHHHHHHHH-----------hccCCC------
Q 026903          110 GRALVPGCGTGYDVVAMAS------------PE--RYVVGLEI---SDIAIKKAEEL-----------SSSLPN------  155 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------------~~--~~v~~iD~---s~~~i~~a~~~-----------~~~~~~------  155 (231)
                      -+|||+|.|+|.+.+...+            +.  .+++++|.   +.+.+..+-..           ....+.      
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            5999999999998766643            12  37999998   77666633221           111110      


Q ss_pred             -------CCceEEEEccCCCCCC------CCceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEE
Q 026903          156 -------AKFVSFLKADFFTWCP------TELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       156 -------~~~i~~~~~d~~~~~~------~~~fD~i~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~  211 (231)
                             ...+++..+|+.+..+      ...||+|+.-.+-....|+ =...+++.+.++++|||.+..
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  217 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  217 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence                   1235566777766222      3579999975432222221 014678999999999998764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.97  E-value=0.65  Score=37.02  Aligned_cols=76  Identities=9%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC------------hHHHHHHHHHhccCCCCCceEEEEccCCCCC
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s------------~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  170 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.+|.+            ++.++...+.+...+  .++.++.+|+.+..
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~  102 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFD  102 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHH
Confidence            345678999998876   3456666799999999987            555555544443332  46899999998832


Q ss_pred             C-----------CCceeEEEeCCc
Q 026903          171 P-----------TELFDLIFDYTF  183 (231)
Q Consensus       171 ~-----------~~~fD~i~~~~~  183 (231)
                      .           -+..|+++.+..
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCC
Confidence            1           147899998754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=93.96  E-value=0.64  Score=35.73  Aligned_cols=74  Identities=11%  Similarity=0.032  Sum_probs=53.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCce
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~f  175 (231)
                      ..++++||-.|++.|   ..+..|++.|.+|+.++.++..++...+...     .++.+..+|+.+..       ..+..
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCC
Confidence            445689999988765   3455566689999999999988777666543     35889999988721       12468


Q ss_pred             eEEEeCCcc
Q 026903          176 DLIFDYTFF  184 (231)
Q Consensus       176 D~i~~~~~~  184 (231)
                      |+++.+...
T Consensus        86 d~li~~Ag~   94 (249)
T 3f9i_A           86 DILVCNAGI   94 (249)
T ss_dssp             SEEEECCC-
T ss_pred             CEEEECCCC
Confidence            999987654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.85  E-value=0.54  Score=37.09  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=53.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC----------------hHHHHHHHHHhccCCCCCceEEEEccC
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS----------------DIAIKKAEELSSSLPNAKFVSFLKADF  166 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s----------------~~~i~~a~~~~~~~~~~~~i~~~~~d~  166 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.+|.+                ++.++...+.....+  .++.++.+|+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv   85 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDV   85 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCT
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCC
Confidence            345678999998876   3456666799999999987                555655555444332  4689999999


Q ss_pred             CCCCC-----------CCceeEEEeCCcc
Q 026903          167 FTWCP-----------TELFDLIFDYTFF  184 (231)
Q Consensus       167 ~~~~~-----------~~~fD~i~~~~~~  184 (231)
                      .+...           -+..|+++.+...
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            88211           1368999987543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.83  E-value=0.29  Score=38.08  Aligned_cols=102  Identities=15%  Similarity=0.040  Sum_probs=63.0

Q ss_pred             CCcEEEecCCCc---hHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          109 KGRALVPGCGTG---YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      +++||-.|++.|   .++..|++ .|.+|+.++.++...+...+.+...+  .++.++.+|+.+...           -+
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            467887775543   23444556 78999999999877666555544332  358899999988311           12


Q ss_pred             ceeEEEeCCccccc-----C-hHHH-----------HHHHHHHHhhcCCCcEEEEE
Q 026903          174 LFDLIFDYTFFCAI-----E-PEMR-----------AAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       174 ~fD~i~~~~~~~~~-----~-~~~~-----------~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .+|+|+.+......     + .+..           ..+++.+...++++|.++.+
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~  137 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  137 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence            69999977543211     1 1211           23555666677777776654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=93.83  E-value=0.44  Score=37.97  Aligned_cols=106  Identities=17%  Similarity=0.078  Sum_probs=67.3

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC--hHHHHHHHHHhccCCCCCceEEEEccCCCCCC---------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s--~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------  171 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.++.+  ....+...+.....+  .++.++.+|+.+...         
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            345678999998765   3455566699999999986  334444444433332  468899999988310         


Q ss_pred             --CCceeEEEeCCcccc-------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 --TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 --~~~fD~i~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                        -+..|+++.+.....       ++.++.           ..+++.+...|+.+|.++.+.
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence              146899998755422       222222           245566777888888876643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.77  E-value=0.17  Score=36.25  Aligned_cols=97  Identities=14%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             CCCCcEEEecCCC-chHH-HHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCC--CCceeEEE
Q 026903          107 LPKGRALVPGCGT-GYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP--TELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~-~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~--~~~fD~i~  179 (231)
                      .++.+|+-+|||. |... ..|...|..|+++|.+++.++.+++   ..    .+.++.+|..+   ...  -..+|+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            4557999999865 4333 3333478899999999875543321   11    24566676554   111  23689888


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ....     .......+..+.+.+.+...++.....
T Consensus        90 ~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           90 AFTN-----DDSTNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             ECSS-----CHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             EEeC-----CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            5422     223334445555556666666655443

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.76  E-value=0.29  Score=40.83  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=34.3

Q ss_pred             CcEEEecCCCchHHHHhcC---------CCCeEEEEeCChHHHHHHHHHhcc
Q 026903          110 GRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~---------~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      -.|+|+|.|.|.++..+++         ...+++.||+|+...+.-++.+..
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            4799999999999877764         123899999999998877776644

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.73  E-value=0.45  Score=40.50  Aligned_cols=93  Identities=12%  Similarity=0.036  Sum_probs=62.8

Q ss_pred             CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---------------
Q 026903          107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------------  168 (231)
Q Consensus       107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------------  168 (231)
                      .++.+||-+|+ | .|..+..+++ .|.++++++.+++-++.+++.-..       .++...-.+               
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE-------AIIDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC-------EEEETTTTTCCSEEETTEECHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc-------EEEecCcCcccccccccccchHHH
Confidence            45689999997 4 4788888887 888999999999999988764321       122111110               


Q ss_pred             ---------CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          169 ---------WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       169 ---------~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                               ......+|+|+....-         ..+....++|+++|.++++...
T Consensus       300 ~~~~~~i~~~t~g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~G~~  346 (456)
T 3krt_A          300 KRFGKRIRELTGGEDIDIVFEHPGR---------ETFGASVFVTRKGGTITTCAST  346 (456)
T ss_dssp             HHHHHHHHHHHTSCCEEEEEECSCH---------HHHHHHHHHEEEEEEEEESCCT
T ss_pred             HHHHHHHHHHhCCCCCcEEEEcCCc---------hhHHHHHHHhhCCcEEEEEecC
Confidence                     1123479999853321         3467788899999999876543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.72  E-value=0.84  Score=35.43  Aligned_cols=76  Identities=17%  Similarity=0.027  Sum_probs=52.4

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+..      .     -
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45678898887655   3345556689999999999887766555443322  35889999998831      0     1


Q ss_pred             -CceeEEEeCCcc
Q 026903          173 -ELFDLIFDYTFF  184 (231)
Q Consensus       173 -~~fD~i~~~~~~  184 (231)
                       +..|+++.+...
T Consensus        85 ~g~id~lv~~Ag~   97 (260)
T 2ae2_A           85 HGKLNILVNNAGI   97 (260)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence             578999987653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.72  E-value=0.47  Score=37.65  Aligned_cols=76  Identities=17%  Similarity=0.029  Sum_probs=54.1

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CC-----------C
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CP-----------T  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-----------~  172 (231)
                      .+++||-.|++.|   ..+..|++.|.+|+.++.++...+.+.+.+.... ..++.++.+|+.+. ..           -
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            4568888887765   3445556689999999999988777666554432 24689999999886 21           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999988654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=93.71  E-value=0.37  Score=37.76  Aligned_cols=79  Identities=14%  Similarity=0.037  Sum_probs=53.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCce
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~f  175 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.+|.+++.++...+.+........+.++.+|+.+..       .-+..
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            345678898887765   34555666899999999998877666554433222235788899988721       12468


Q ss_pred             eEEEeCCcc
Q 026903          176 DLIFDYTFF  184 (231)
Q Consensus       176 D~i~~~~~~  184 (231)
                      |+++.+...
T Consensus        87 d~lv~nAg~   95 (267)
T 3t4x_A           87 DILINNLGI   95 (267)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999987543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=93.62  E-value=0.65  Score=36.23  Aligned_cols=78  Identities=15%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+.......++.++.+|+.+...           -
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45678998888765   344555668999999999988776655443221011358899999988311           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +.+|+++.+...
T Consensus        91 g~id~lv~nAg~  102 (267)
T 1iy8_A           91 GRIDGFFNNAGI  102 (267)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            368999987543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.62  E-value=0.35  Score=38.00  Aligned_cols=78  Identities=13%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC------------hHHHHHHHHHhccCCCCCceEEEEccCCCCC
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s------------~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  170 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.+|.+            ++.++...+.....+  .++.++.+|+.+..
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            345678999998766   3456666799999999987            555555444433322  46899999999821


Q ss_pred             C-----------CCceeEEEeCCccc
Q 026903          171 P-----------TELFDLIFDYTFFC  185 (231)
Q Consensus       171 ~-----------~~~fD~i~~~~~~~  185 (231)
                      .           -+..|+++.+....
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            1           13789999876544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.57  E-value=0.53  Score=35.62  Aligned_cols=89  Identities=10%  Similarity=-0.023  Sum_probs=57.2

Q ss_pred             cEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeC
Q 026903          111 RALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~  181 (231)
                      +|+-+|+|  ..+..++    +.|..|+.+|.+++.++...+..       .+.++.+|..+..     .-..+|+|++.
T Consensus         2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            57777864  4444444    48889999999999887655432       2678899988721     12468888853


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .     +++.....+....+.+.|...++...
T Consensus        73 ~-----~~d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           73 T-----PRDEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             C-----SCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             c-----CCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence            2     22334455566666666777666543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.55  E-value=0.79  Score=36.13  Aligned_cols=74  Identities=18%  Similarity=0.034  Sum_probs=53.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.+|.+++..+...+...     .++.++.+|+.+...           
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHH
Confidence            345678999888776   3456666799999999999887776665542     357899999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus       101 ~g~iD~lvnnAg~  113 (277)
T 3gvc_A          101 FGGVDKLVANAGV  113 (277)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1368999987554

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.53  E-value=0.28  Score=40.19  Aligned_cols=94  Identities=13%  Similarity=0.028  Sum_probs=61.9

Q ss_pred             CCCC--CcEEEecC--CCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCC
Q 026903          106 ALPK--GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPT  172 (231)
Q Consensus       106 ~~~~--~~vLDiGc--G~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~  172 (231)
                      ..++  .+||-.|+  |.|..+..+++ .|. +|++++.+++.++.+++.+..    +  ..+...-.+       ... 
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~----~--~~~d~~~~~~~~~~~~~~~-  228 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF----D--AAINYKKDNVAEQLRESCP-  228 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC----S--EEEETTTSCHHHHHHHHCT-
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----c--eEEecCchHHHHHHHHhcC-
Confidence            3456  89999998  34666666666 888 999999999888877653321    1  122211111       111 


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +.+|+++.+..-         ..++.+.++|+++|+++++...
T Consensus       229 ~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          229 AGVDVYFDNVGG---------NISDTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             TCEEEEEESCCH---------HHHHHHHHTEEEEEEEEECCCG
T ss_pred             CCCCEEEECCCH---------HHHHHHHHHhccCcEEEEECCc
Confidence            269999965441         3467888999999999876654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.50  E-value=0.66  Score=36.21  Aligned_cols=106  Identities=11%  Similarity=0.045  Sum_probs=66.3

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCCh---HHHHHHHHHhccCCCCCceEEEEccCCCCCC--------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~---~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------  171 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.++.+.   +.++...+.+...+  .++.++.+|+.+...        
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence            455678999998876   34566677999999987653   34444444443332  468999999988321        


Q ss_pred             ---CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 ---TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ---~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                         -+..|+++.+.....      .+.++.           ..+++.+...|+++|.++.+.
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence               147999998755322      233322           234455566666778776543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.50  E-value=0.71  Score=35.44  Aligned_cols=76  Identities=22%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.++...+...+.....+  .++.++.+|+.+..           ..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34578888887765   3455666689999999999988777666554433  46899999998821           12


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468999987554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.47  E-value=0.095  Score=42.68  Aligned_cols=57  Identities=21%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             CceEEEEccCCC---CCCCCceeEEEeCCcccccC------------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIE------------PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       157 ~~i~~~~~d~~~---~~~~~~fD~i~~~~~~~~~~------------~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+..++++|..+   ..++++||+|++...+....            .......++.+.++|+|||.+++..
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~   84 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF   84 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence            357889999876   34567899999986653221            0245678899999999999987754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.47  E-value=0.78  Score=35.73  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=51.2

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      .++++|-.|++.|   ..+..|++.|.+|+.++.+++..+...+.+.......++.++.+|+.+...           -+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4568888887665   344555668999999999987766554444321112358899999988311           13


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      ..|+++.+...
T Consensus        86 ~id~lv~~Ag~   96 (267)
T 2gdz_A           86 RLDILVNNAGV   96 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            58999987654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.083  Score=42.86  Aligned_cols=95  Identities=13%  Similarity=-0.004  Sum_probs=59.5

Q ss_pred             CCC-cEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc--CCCCCCCCceeEEEeC
Q 026903          108 PKG-RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFTWCPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~-~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d--~~~~~~~~~fD~i~~~  181 (231)
                      ++. +||-.|+  |.|..+..+++ .|.+|++++.+++.++.+++.-...    -+.....+  .........+|+|+..
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~~~~~~d~vid~  223 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE----VLAREDVMAERIRPLDKQRWAAAVDP  223 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE----EEECC---------CCSCCEEEEEEC
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcE----EEecCCcHHHHHHHhcCCcccEEEEC
Confidence            443 8999997  45788888877 7889999999988888887632110    01110110  0111122479999864


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..-.         .+....++|+++|+++++...
T Consensus       224 ~g~~---------~~~~~~~~l~~~G~~v~~G~~  248 (328)
T 1xa0_A          224 VGGR---------TLATVLSRMRYGGAVAVSGLT  248 (328)
T ss_dssp             STTT---------THHHHHHTEEEEEEEEECSCC
T ss_pred             CcHH---------HHHHHHHhhccCCEEEEEeec
Confidence            3321         256788899999998876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.19  E-value=1  Score=34.92  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=52.8

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.+|.+++..+...+...     .++.++.+|+.+...           -
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----PAAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            45678999997765   3455666699999999999887776655542     357899999988321           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        81 g~id~lv~~Ag~   92 (259)
T 4e6p_A           81 GGLDILVNNAAL   92 (259)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999987554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.19  E-value=0.65  Score=36.18  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             CCCCCcEEEecCCC--c--h-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---------
Q 026903          106 ALPKGRALVPGCGT--G--Y-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~--G--~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------  171 (231)
                      .+.++++|--|++.  |  . .+..|++.|++|+.++.+++..+.+.+.....+ ..++.++++|+.+...         
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            46678999999643  3  2 456677799999999999888877776665432 2358899999988311         


Q ss_pred             --CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 --TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 --~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                        -+..|+++.+..+..          .+.++.           ....+.....++.+|.++...
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence              157999987754321          111211           122334456778889887654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.02  E-value=0.57  Score=36.84  Aligned_cols=85  Identities=18%  Similarity=0.178  Sum_probs=54.6

Q ss_pred             cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903          111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (231)
Q Consensus       111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~  188 (231)
                      +|.-||||. | .++..+.+.|.+|+++|.+++.++.+.+.    +...  . ...+..+.   ...|+|+..     ++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~--~-~~~~~~~~---~~~D~vi~a-----v~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVD--E-AGQDLSLL---QTAKIIFLC-----TP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCS--E-EESCGGGG---TTCSEEEEC-----SC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhC----CCCc--c-ccCCHHHh---CCCCEEEEE-----CC
Confidence            577889875 3 33445556788999999999887776532    1111  1 12233333   357988843     44


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEE
Q 026903          189 PEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +.....+++.+...++++..++
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           67 IQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             HHHHHHHHHHHGGGSCTTCEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCEEE
Confidence            5566778888888888887654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.96  E-value=1  Score=35.48  Aligned_cols=105  Identities=17%  Similarity=0.098  Sum_probs=63.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHH-HHHHHHHhccCCCCCceEEEEccCCCCC------C-----
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKADFFTWC------P-----  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~-i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----  171 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.++.. .+...+.+...+  .++.++.+|+.+..      .     
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45678888887665   2344555689999999988643 333333333222  35888999988721      0     


Q ss_pred             CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -+..|+++.+.....      .+.++.           ..+++.+...|+.+|.++.+.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            136899998755432      222222           234466667777778776543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.87  E-value=1.3  Score=35.14  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCC-CCceeEEEeCCc
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP-TELFDLIFDYTF  183 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~-~~~fD~i~~~~~  183 (231)
                      ++|.-+|+|. | .++..|++.|.+|+.+|.+++.++..++...................+   ... -..+|+|+..  
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~--   81 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL--   81 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC--
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE--
Confidence            4789999985 3 344555568889999999998887776542100000000000001111   111 0268988843  


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                         +++.....+++.+...++++..++..
T Consensus        82 ---v~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           82 ---TKAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             ---SCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             ---eccccHHHHHHHHHHhcCCCCEEEEe
Confidence               33445577888888899888866543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.76  E-value=1.7  Score=35.95  Aligned_cols=99  Identities=13%  Similarity=-0.010  Sum_probs=66.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .+.+||.++.+.|.++..++..  .++.+.-|-..-...+.|+..+++.. .+++...  .+. ....||+|+....-  
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~-~~~~~~~v~~~lpk--  110 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD-YPQQPGVVLIKVPK--  110 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC-CCSSCSEEEEECCS--
T ss_pred             CCCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc-cccCCCEEEEEcCC--
Confidence            3468999999999999998764  34555435555556667777776553 3665433  222 23579998843221  


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                       ........|..+...|+||+.+++..-
T Consensus       111 -~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          111 -TLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             -CHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             -CHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence             125667788999999999999987653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.73  E-value=0.11  Score=42.10  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=57.1

Q ss_pred             CCCCCcEEEec-CCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CC-CCCceeEEEe
Q 026903          106 ALPKGRALVPG-CGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC-PTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiG-cG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~fD~i~~  180 (231)
                      ..++.+||-+| +|. |..+..+++ .|.+|++++ +++..+.+++.-..       .++...-.+ .. .-..+|+|+.
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~-------~~i~~~~~~~~~~~~~g~D~v~d  221 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE-------QCINYHEEDFLLAISTPVDAVID  221 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS-------EEEETTTSCHHHHCCSCEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC-------EEEeCCCcchhhhhccCCCEEEE
Confidence            34568999997 554 888888887 888999998 45557777664211       122221111 10 1146999985


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      ...     .+    .+....++|+++|+++..
T Consensus       222 ~~g-----~~----~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          222 LVG-----GD----VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             SSC-----HH----HHHHHGGGEEEEEEEEEC
T ss_pred             CCC-----cH----HHHHHHHhccCCCEEEEe
Confidence            332     11    236788999999998865

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.68  E-value=0.65  Score=36.13  Aligned_cols=76  Identities=18%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      ..+++||-.|++.|   .++..|++.|.+|++++. ++...+...+.+...+  .++.++.+|+.+...           
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            44578888886543   234445558999999998 7766655544443322  358899999988311           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+.+|+++.+...
T Consensus        97 ~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           97 FGGLDFVMSNSGM  109 (274)
T ss_dssp             HSCEEEEECCCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1268999977543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=92.64  E-value=1.9  Score=33.51  Aligned_cols=104  Identities=23%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CCCCcEEEecCCC-chH----HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          107 LPKGRALVPGCGT-GYD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~----~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      +.++++|-.|++. |..    +..|++.|.+|+.++.++...+...+.....+   ...++.+|+.+..           
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   83 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGK   83 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC---CcEEEEccCCCHHHHHHHHHHHHH
Confidence            3457899999762 333    44455589999999988722122222111111   2467889988721           


Q ss_pred             CCCceeEEEeCCcccc-----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCA-----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~-----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-+..|+++.+.....           .+.++.           ..+++.+...++++|.++.+.
T Consensus        84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (265)
T 1qsg_A           84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS  148 (265)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence            1137899998765432           333322           233445556666677776554

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.59  E-value=0.15  Score=44.07  Aligned_cols=90  Identities=16%  Similarity=0.011  Sum_probs=56.4

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..++++|+-+|+|. |......++ .|.+|+++|.++...+.+.+.-        .++  .++.+..  ...|+|+....
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G--------a~~--~~l~e~l--~~aDvVi~atg  338 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG--------FDV--VTVEEAI--GDADIVVTATG  338 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT--------CEE--CCHHHHG--GGCSEEEECSS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CEE--ecHHHHH--hCCCEEEECCC
Confidence            45678999999975 555555544 7889999999998877765431        221  1222222  35899886532


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      -.++-       -....+.|++||+|+.+..
T Consensus       339 t~~~i-------~~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          339 NKDII-------MLEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             SSCSB-------CHHHHHHSCTTCEEEECSS
T ss_pred             CHHHH-------HHHHHHhcCCCcEEEEeCC
Confidence            22210       1245667899998876544

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.59  E-value=0.28  Score=40.01  Aligned_cols=89  Identities=15%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-------CCCCcee
Q 026903          107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~fD  176 (231)
                      .++.+||-+|+ | .|..+..+++ .|.+|+++ .+++.++.+++.-        .+.+. +-.+.       .....+|
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG--------a~~i~-~~~~~~~~~~~~~~~~g~D  218 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG--------ATPID-ASREPEDYAAEHTAGQGFD  218 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT--------SEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC--------CCEec-cCCCHHHHHHHHhcCCCce
Confidence            35689999994 3 4788888877 88899999 8888888887642        11222 22221       1234799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+....-         ..+....++|+++|.++++..
T Consensus       219 ~vid~~g~---------~~~~~~~~~l~~~G~iv~~g~  247 (343)
T 3gaz_A          219 LVYDTLGG---------PVLDASFSAVKRFGHVVSCLG  247 (343)
T ss_dssp             EEEESSCT---------HHHHHHHHHEEEEEEEEESCC
T ss_pred             EEEECCCc---------HHHHHHHHHHhcCCeEEEEcc
Confidence            99964331         246778889999999876543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.58  E-value=1  Score=35.75  Aligned_cols=77  Identities=16%  Similarity=0.009  Sum_probs=51.3

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CCCCceEEEEccCCCCC------C---
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTWC------P---  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~~~~i~~~~~d~~~~~------~---  171 (231)
                      +.+++||-.|++.|   .++..|++.|.+|+.++.++..++...+.+...   ....++.++.+|+.+..      .   
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            44578998887654   234445558999999999987776655544321   01246899999998831      1   


Q ss_pred             --CCceeEEEeCCc
Q 026903          172 --TELFDLIFDYTF  183 (231)
Q Consensus       172 --~~~fD~i~~~~~  183 (231)
                        -+.+|+++.+..
T Consensus        96 ~~~g~id~li~~Ag  109 (303)
T 1yxm_A           96 DTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence              135899998765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.56  E-value=3.1  Score=37.43  Aligned_cols=114  Identities=11%  Similarity=0.101  Sum_probs=74.1

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCC----------CCeEEEEeCChHHHHHHHHHhccCC------------
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP----------ERYVVGLEISDIAIKKAEELSSSLP------------  154 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~----------~~~v~~iD~s~~~i~~a~~~~~~~~------------  154 (231)
                      +.+++... ..+...|+-+|||.-.....|...          +..++=+|. |+.++.=++.+...+            
T Consensus        96 v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~  174 (695)
T 2zwa_A           96 LNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDK  174 (695)
T ss_dssp             HHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSC
T ss_pred             HHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhcccccc
Confidence            34444433 223478999999998888777653          335666666 444444333332110            


Q ss_pred             -C----------CCceEEEEccCCCC-----------C-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          155 -N----------AKFVSFLKADFFTW-----------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       155 -~----------~~~i~~~~~d~~~~-----------~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                       .          .++.+++.+|+.+.           + .....-++++-.++.+++++...++|+.+.+.  ++|.+++
T Consensus       175 ~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~  252 (695)
T 2zwa_A          175 DYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFII  252 (695)
T ss_dssp             SSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEE
T ss_pred             ccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEE
Confidence             0          13688999999882           1 33456678888999999999999999999864  6776666


Q ss_pred             EEc
Q 026903          212 LMF  214 (231)
Q Consensus       212 ~~~  214 (231)
                      .+.
T Consensus       253 ~e~  255 (695)
T 2zwa_A          253 LEQ  255 (695)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=92.48  E-value=2  Score=33.18  Aligned_cols=77  Identities=17%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------
Q 026903          107 LPKGRALVPGCGTG---YDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  170 (231)
                      +.++++|-.|++.|   ..+..|++   .|.+|+.++.+++.++...+.+.......++.++.+|+.+..          
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            34567888887765   34555666   799999999998877665554432111135889999998821          


Q ss_pred             ---CCCcee--EEEeCCc
Q 026903          171 ---PTELFD--LIFDYTF  183 (231)
Q Consensus       171 ---~~~~fD--~i~~~~~  183 (231)
                         ..+.+|  +++.+..
T Consensus        84 ~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HSCCCTTCCEEEEEECCC
T ss_pred             hccccccCCccEEEECCc
Confidence               113577  8877654

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=92.47  E-value=0.42  Score=37.95  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=38.6

Q ss_pred             EEE-EccCCCCCCCCceeEEEeCCc----ccccC---h--HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          160 SFL-KADFFTWCPTELFDLIFDYTF----FCAIE---P--EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       160 ~~~-~~d~~~~~~~~~fD~i~~~~~----~~~~~---~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +++ .+|+..+...+.+|+|++...    .||..   +  ....-+++...++|+|||.+++-.|...
T Consensus       191 t~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga  258 (320)
T 2hwk_A          191 TFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA  258 (320)
T ss_dssp             SEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred             eeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence            344 567766554467999999754    33311   1  1112356677789999999999998775

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=92.36  E-value=0.46  Score=37.30  Aligned_cols=105  Identities=14%  Similarity=0.004  Sum_probs=65.6

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEe-CChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLE-ISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD-~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      ..++++|--|++.|   ..+..|++.|.+|+.++ .++...+...+.....+  .++.++.+|+.+...           
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            44678999998776   34556667899988874 45555555554443332  468899999988321           


Q ss_pred             CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -+..|+++.+.....      .+.+..           ..+++.+...|+.+|.++.+.
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            147999998754332      222222           234566677777888876653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.33  E-value=0.22  Score=42.11  Aligned_cols=43  Identities=16%  Similarity=0.113  Sum_probs=34.8

Q ss_pred             CCcEEEecCCCchHHHHhcC----C---CCeEEEEeCChHHHHHHHHHhc
Q 026903          109 KGRALVPGCGTGYDVVAMAS----P---ERYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~----~---~~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      +..|+|+|.|.|.++..+++    .   -.+++.||+|+...+.-++++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            46999999999998877764    1   2379999999998887777654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=92.29  E-value=0.69  Score=35.82  Aligned_cols=73  Identities=11%  Similarity=0.006  Sum_probs=50.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++..+...+..     ..++.++.+|+.+...           -
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            34578888887665   334555668999999999987666544433     1358889999987311           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        78 g~iD~lv~nAg~   89 (254)
T 1hdc_A           78 GSVDGLVNNAGI   89 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.19  E-value=0.73  Score=37.97  Aligned_cols=96  Identities=10%  Similarity=0.011  Sum_probs=62.4

Q ss_pred             CCcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------CCCCceEEEEccCCCCCCCCceeEEEe
Q 026903          109 KGRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKADFFTWCPTELFDLIFD  180 (231)
Q Consensus       109 ~~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~fD~i~~  180 (231)
                      .++|.-||+|.  +.++..|++.|..|+..|.+++.++..++.....      .+..++.+. .|..+..  ...|+|+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea~--~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKASL--EGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHHH--TTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHHH--hcCCEEEE
Confidence            36899999986  3455666778899999999999888777643211      111122221 2222211  35788874


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .     ++......+++.+...++|+..++..
T Consensus       106 a-----Vp~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A          106 V-----VPSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             C-----CCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             C-----CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            2     45567788899999999998876544

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.15  E-value=0.58  Score=37.77  Aligned_cols=100  Identities=13%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             CCCcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccC-CCCCCCCceeEEEeCCc
Q 026903          108 PKGRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADF-FTWCPTELFDLIFDYTF  183 (231)
Q Consensus       108 ~~~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~-~~~~~~~~fD~i~~~~~  183 (231)
                      ...+|.-+|+|.  +.++..|++.|..|+.+ .+++.++..++.-..... ....+.. ... .+......+|+|+..  
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~D~vila--   93 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLET-QSFDEQVKVSASSDPSAVQGADLVLFC--   93 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEEC-SSCEEEECCEEESCGGGGTTCSEEEEC--
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEc-CCCcEEEeeeeeCCHHHcCCCCEEEEE--
Confidence            347999999996  35566666788899999 888888877664211100 0111100 000 011112468988843  


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                         ++......+++.+...++++..++...-
T Consensus        94 ---vk~~~~~~~l~~l~~~l~~~~~iv~~~n  121 (318)
T 3hwr_A           94 ---VKSTDTQSAALAMKPALAKSALVLSLQN  121 (318)
T ss_dssp             ---CCGGGHHHHHHHHTTTSCTTCEEEEECS
T ss_pred             ---cccccHHHHHHHHHHhcCCCCEEEEeCC
Confidence               2333456788899999999987765543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.12  E-value=0.49  Score=37.08  Aligned_cols=76  Identities=20%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             CCCCCcEEEecCCCch---HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .++++.+|-=|++.|.   .+..|++.|.+|+.+|.+++.++...+.+...+  .++.++++|+.+...           
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3567888998988873   456667799999999999998888777665543  468899999998321           


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -++.|+++.+..
T Consensus        82 ~G~iDiLVNNAG   93 (254)
T 4fn4_A           82 YSRIDVLCNNAG   93 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            157999998754

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=92.04  E-value=1.4  Score=34.29  Aligned_cols=74  Identities=23%  Similarity=0.177  Sum_probs=50.3

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCcee
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD  176 (231)
                      .+.++.+|-=|.+.|   ..+..|++.|.+|+.+|.+..  +.+.+.....+  .++.++.+|+.+.      ...+..|
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD   81 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD   81 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence            467788888888887   346667779999999998743  11222222222  3588899998883      2345799


Q ss_pred             EEEeCCc
Q 026903          177 LIFDYTF  183 (231)
Q Consensus       177 ~i~~~~~  183 (231)
                      +++.+..
T Consensus        82 iLVNNAG   88 (247)
T 4hp8_A           82 ILVNNAG   88 (247)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998754

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.02  E-value=1.2  Score=34.68  Aligned_cols=73  Identities=14%  Similarity=0.053  Sum_probs=50.5

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+...     .++.++.+|+.+...           -
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34568888887665   3445556689999999999877665544332     358899999988311           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        79 g~iD~lvnnAg~   90 (263)
T 2a4k_A           79 GRLHGVAHFAGV   90 (263)
T ss_dssp             SCCCEEEEGGGG
T ss_pred             CCCcEEEECCCC
Confidence            368999987554

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=91.98  E-value=0.34  Score=41.11  Aligned_cols=94  Identities=14%  Similarity=0.033  Sum_probs=61.1

Q ss_pred             CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCC----------------
Q 026903          107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----------------  167 (231)
Q Consensus       107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----------------  167 (231)
                      .++.+||-.|+ | .|..+..+++ .|.++++++.+++.++.+++.-...    -+.....++.                
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDL----VINRAELGITDDIADDPRRVVETGRK  294 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCC----EEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE----EEecccccccccccccccccchhhhH
Confidence            45689999997 3 3777777777 8889999999999988886532110    0111111111                


Q ss_pred             --C----CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          168 --T----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       168 --~----~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                        +    .. ...+|+|+....-         ..++...++|+++|.++.+..
T Consensus       295 ~~~~v~~~~-g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          295 LAKLVVEKA-GREPDIVFEHTGR---------VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHH-SSCCSEEEECSCH---------HHHHHHHHHSCTTCEEEESCC
T ss_pred             HHHHHHHHh-CCCceEEEECCCc---------hHHHHHHHHHhcCCEEEEEec
Confidence              0    11 3469999864331         245777889999999887654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=91.97  E-value=2.8  Score=31.62  Aligned_cols=69  Identities=7%  Similarity=-0.005  Sum_probs=48.3

Q ss_pred             cEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--------CCCceeEEE
Q 026903          111 RALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELFDLIF  179 (231)
Q Consensus       111 ~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~fD~i~  179 (231)
                      +||-.|++.|   ..+..|++.|.+|+.++.+++.++...+..     ..++.++.+|+.+..        ....+|+++
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            6788887765   234555668999999999998877665544     235788999998821        123469998


Q ss_pred             eCCcc
Q 026903          180 DYTFF  184 (231)
Q Consensus       180 ~~~~~  184 (231)
                      .+...
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            77543

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=91.94  E-value=1.2  Score=33.99  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHh-ccCCCCCceEEEEccCCCCCC-----------CCc
Q 026903          110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFTWCP-----------TEL  174 (231)
Q Consensus       110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~~-----------~~~  174 (231)
                      +++|-.|++.|   ..+..|++.|.+|+.++.++..++...+.. ...  ..++.++.+|+.+...           -+.
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY--ADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            57788886654   234445558999999999987776655444 221  2468899999988321           126


Q ss_pred             eeEEEeCCc
Q 026903          175 FDLIFDYTF  183 (231)
Q Consensus       175 fD~i~~~~~  183 (231)
                      +|+++.+..
T Consensus        81 id~li~~Ag   89 (250)
T 2cfc_A           81 IDVLVNNAG   89 (250)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998754

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.90  E-value=0.94  Score=35.44  Aligned_cols=77  Identities=14%  Similarity=0.063  Sum_probs=50.3

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-CCCCCceEEEEccCCCCC------C-----C
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFTWC------P-----T  172 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~~~------~-----~  172 (231)
                      .++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+.. .....++.++.+|+.+..      .     -
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            4567888887655   33445556899999999998877665554411 111246889999998831      0     1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            368999987543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.90  E-value=0.87  Score=35.80  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCCcc
Q 026903          110 GRALVPGCGT-G-YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFF  184 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~i~~~~~~  184 (231)
                      ++|.-||+|. | .++..+++.|.  +|+++|.+++.++.+++.    +...  . ...+..+..  . ..|+|+.    
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~~~--~-~~~~~~~~~--~~~aDvVil----   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID--E-GTTSIAKVE--DFSPDFVML----   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS--E-EESCGGGGG--GTCCSEEEE----
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CCcc--c-ccCCHHHHh--cCCCCEEEE----
Confidence            3688899886 3 33444555776  899999999888776542    1111  1 122332222  2 5788884    


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                       .+++.....++..+...++++.+++.
T Consensus        69 -avp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           69 -SSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             -CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -cCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             24555556778888888888875543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=91.81  E-value=1.4  Score=34.49  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=60.7

Q ss_pred             CCCCcEEEecCC--Cc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          107 LPKGRALVPGCG--TG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG--~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      ..++++|-.|++  .|   ..+..|++.|.+|+.++.++..-+...+.....+   ++.++.+|+.+...          
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   80 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKK   80 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHH
Confidence            345789999976  33   3345556689999999988752222222211111   36788999988210          


Q ss_pred             -CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          172 -TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 -~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       -+..|+++.+.....          .+.+..           ..+++.+...|+++|.++.+.
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence             136899998765322          222322           234455566666678776554

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=91.66  E-value=2.4  Score=33.24  Aligned_cols=74  Identities=15%  Similarity=0.043  Sum_probs=48.8

Q ss_pred             CCCCCcEEEecCC--C--c-hHHHHhcCCCCeEEEEeCCh--HHHHHHHHHhccCCCCCceEEEEccCCCCCC-------
Q 026903          106 ALPKGRALVPGCG--T--G-YDVVAMASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG--~--G-~~~~~l~~~~~~v~~iD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------  171 (231)
                      .+.++++|-.|++  .  | ..+..|++.|.+|+.++.+.  +.++...+   ..   .++.++.+|+.+...       
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~---~~---~~~~~~~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA---EF---NPAAVLPCDVISDQEIKDLFVE   96 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG---GG---CCSEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH---hc---CCceEEEeecCCHHHHHHHHHH
Confidence            3456799999954  3  3 34566677999999999987  33333222   22   247899999988210       


Q ss_pred             ----CCceeEEEeCCccc
Q 026903          172 ----TELFDLIFDYTFFC  185 (231)
Q Consensus       172 ----~~~fD~i~~~~~~~  185 (231)
                          -+..|+++.+....
T Consensus        97 ~~~~~g~id~li~nAg~~  114 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAFA  114 (280)
T ss_dssp             HHHHCSSCCEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCccC
Confidence                14689999876543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=91.65  E-value=0.73  Score=37.28  Aligned_cols=88  Identities=14%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             cHHHHHHHHcCCCCCCcEEEecCCCchHHHHh----cCCCCeEEEEeCChH----HHHHHHHHhccCCCCCceEEEEccC
Q 026903           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDI----AIKKAEELSSSLPNAKFVSFLKADF  166 (231)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l----~~~~~~v~~iD~s~~----~i~~a~~~~~~~~~~~~i~~~~~d~  166 (231)
                      .+.++++.......+++||-.|+ +|..+..+    ++.|.+|++++.++.    .+.......... ...+++++.+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl   88 (351)
T 3ruf_A           11 MSRYEEITQQLIFSPKTWLITGV-AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTE-QWSRFCFIEGDI   88 (351)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHH-HHTTEEEEECCT
T ss_pred             HHHHhhHHhhCCCCCCeEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccc-cCCceEEEEccC
Confidence            34444444443445679998885 45444444    448899999998543    232222211000 003589999999


Q ss_pred             CCCC----CCCceeEEEeCCcc
Q 026903          167 FTWC----PTELFDLIFDYTFF  184 (231)
Q Consensus       167 ~~~~----~~~~fD~i~~~~~~  184 (231)
                      .+..    .-..+|+|+.....
T Consensus        89 ~d~~~~~~~~~~~d~Vih~A~~  110 (351)
T 3ruf_A           89 RDLTTCEQVMKGVDHVLHQAAL  110 (351)
T ss_dssp             TCHHHHHHHTTTCSEEEECCCC
T ss_pred             CCHHHHHHHhcCCCEEEECCcc
Confidence            8821    11368999977654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=91.45  E-value=1.7  Score=34.34  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=52.4

Q ss_pred             CCCcEEEecCCCch---HHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          108 PKGRALVPGCGTGY---DVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       108 ~~~~vLDiGcG~G~---~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      .++++|-.|++.|.   .+..|++.|.   +|+.++.+++.++...+.+.......++.++.+|+.+...          
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            45789999987652   3444555565   9999999998887766654332112468899999988321          


Q ss_pred             -CCceeEEEeCCcc
Q 026903          172 -TELFDLIFDYTFF  184 (231)
Q Consensus       172 -~~~fD~i~~~~~~  184 (231)
                       -+..|+++.+...
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1369999987653

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=91.42  E-value=0.09  Score=42.69  Aligned_cols=92  Identities=16%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             CCC-cEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cC-CC---CCCCCceeEE
Q 026903          108 PKG-RALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DF-FT---WCPTELFDLI  178 (231)
Q Consensus       108 ~~~-~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~-~~---~~~~~~fD~i  178 (231)
                      ++. +||-.|+ | .|..+..+++ .|.+|++++.+++.++.+++.-.     +  .++.. +. .+   ......+|+|
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa-----~--~v~~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA-----S--EVISREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC-----S--EEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----c--EEEECCCchHHHHHHhhcCCccEE
Confidence            443 8999997 3 4777777777 78899999999888888876321     1  11211 11 11   1123469999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +....-         ..+....++|+++|++++....
T Consensus       222 id~~g~---------~~~~~~~~~l~~~G~iv~~G~~  249 (330)
T 1tt7_A          222 VDPVGG---------KQLASLLSKIQYGGSVAVSGLT  249 (330)
T ss_dssp             EESCCT---------HHHHHHHTTEEEEEEEEECCCS
T ss_pred             EECCcH---------HHHHHHHHhhcCCCEEEEEecC
Confidence            854321         1467788999999999876553

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.40  E-value=2.7  Score=35.83  Aligned_cols=97  Identities=19%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-------------CCC-CCceEEEEccCCCCCCCC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-------------LPN-AKFVSFLKADFFTWCPTE  173 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-------------~~~-~~~i~~~~~d~~~~~~~~  173 (231)
                      .+|.-||+|. | ..+..++..|..|+.+|.+++.++.+++....             ... .....+ ..|. +.  -.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~--~~  113 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KE--LS  113 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GG--GT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HH--HC
Confidence            5899999997 3 45666777899999999999988877653210             000 011222 3343 21  13


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..|+|+..-. .  +.+....+++++...++|+.+|+..+
T Consensus       114 ~aDlVIeaVp-e--~~~~k~~v~~~l~~~~~~~~ii~snT  150 (463)
T 1zcj_A          114 TVDLVVEAVF-E--DMNLKKKVFAELSALCKPGAFLCTNT  150 (463)
T ss_dssp             TCSEEEECCC-S--CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             CCCEEEEcCC-C--CHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence            5799885432 2  12345678888999999988775433

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.27  E-value=0.79  Score=35.30  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=55.8

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++++|-.|++.|   .++..|++.|.+|+.+|.+++.++...+.+...+  .++.++.+|+.+...           
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345678999998765   3456666689999999999988877766554432  468899999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        84 ~g~id~li~~Ag~   96 (253)
T 3qiv_A           84 FGGIDYLVNNAAI   96 (253)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1368999987654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.15  E-value=0.76  Score=36.39  Aligned_cols=96  Identities=17%  Similarity=0.127  Sum_probs=59.0

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---------CCC--------CceEEEEccCCCCC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---------PNA--------KFVSFLKADFFTWC  170 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---------~~~--------~~i~~~~~d~~~~~  170 (231)
                      .+|.-||+|. | ..+..++..|.+|+.+|.+++.++.+.+.....         ...        .++.+ ..|..+..
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHHh
Confidence            4788889886 3 344555668999999999999988877652110         000        11222 22322222


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                        ...|+|+..-. .  +.+....+++++...++|+.+++.
T Consensus        84 --~~aDlVi~av~-~--~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           84 --KDADLVIEAVP-E--SLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             --TTCSEEEECCC-S--CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --ccCCEEEEecc-C--cHHHHHHHHHHHHhhCCCCcEEEE
Confidence              35798884322 1  113667788899999999887653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=91.12  E-value=1.1  Score=34.78  Aligned_cols=89  Identities=10%  Similarity=0.045  Sum_probs=56.3

Q ss_pred             CCcEEEecCCC-ch-HHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          109 KGRALVPGCGT-GY-DVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       109 ~~~vLDiGcG~-G~-~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +.+|.-+|||. |. ++..+++.|.. |..+|.+++.++.+.+...       +.+ ..+..+..  ...|+|+..    
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g-------~~~-~~~~~~~~--~~~Dvvi~a----   75 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE-------AEY-TTDLAEVN--PYAKLYIVS----   75 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT-------CEE-ESCGGGSC--SCCSEEEEC----
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC-------Cce-eCCHHHHh--cCCCEEEEe----
Confidence            36899999975 33 33444456776 8999999988877665431       222 23333332  257988843    


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                       +++.....+++.+...+++|..++..
T Consensus        76 -v~~~~~~~v~~~l~~~~~~~~ivv~~  101 (266)
T 3d1l_A           76 -LKDSAFAELLQGIVEGKREEALMVHT  101 (266)
T ss_dssp             -CCHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             -cCHHHHHHHHHHHHhhcCCCcEEEEC
Confidence             34444567778888888888766543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.07  E-value=0.94  Score=35.28  Aligned_cols=75  Identities=11%  Similarity=0.061  Sum_probs=55.6

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45678999998776   3456666799999999999988877766554432  468999999998321           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        87 g~id~lv~nAg   97 (264)
T 3ucx_A           87 GRVDVVINNAF   97 (264)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            47899998753

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=91.04  E-value=1.7  Score=33.88  Aligned_cols=74  Identities=12%  Similarity=-0.096  Sum_probs=49.2

Q ss_pred             CCcEEEecCCCc---hHHHHhcCCCCeEEEE-eCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          109 KGRALVPGCGTG---YDVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~i-D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      +++||-.|++.|   .++..|++.|.+|+.+ +.+.+..+...+.....+  .++.++.+|+.+...           -+
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            467888887665   2345555689988776 677777666655544332  468899999988321           13


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      ..|+++.+...
T Consensus       104 ~id~li~nAg~  114 (272)
T 4e3z_A          104 RLDGLVNNAGI  114 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.01  E-value=0.68  Score=36.65  Aligned_cols=84  Identities=13%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             CcEEEecC-CC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          110 GRALVPGC-GT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       110 ~~vLDiGc-G~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      .+|.-||+ |. | .++..|++.|.+|+++|.+++.++.+.+    .+    +.+  .+..+..  ...|+|+..     
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~----~g----~~~--~~~~~~~--~~aDvVi~a-----   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG----MG----IPL--TDGDGWI--DEADVVVLA-----   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH----TT----CCC--CCSSGGG--GTCSEEEEC-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh----cC----CCc--CCHHHHh--cCCCEEEEc-----
Confidence            48999999 85 3 3455556688899999999988777655    11    111  1222222  357988843     


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEE
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +++.....+++.+...++++..++
T Consensus        75 v~~~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           75 LPDNIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEE
Confidence            444556778888888888887554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.96  E-value=0.22  Score=41.14  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCCCCCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~fD~i~~~  181 (231)
                      .++.+|+-+|+|. |..+..++. .|.+|+++|.+++..+.+.+....     .+..+..+   +.+..  ..+|+|+..
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~DvVI~~  237 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV--AEADLLIGA  237 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH--HTCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH--cCCCEEEEC
Confidence            3458999999964 554444444 788999999999988887765432     12222111   11111  258999865


Q ss_pred             Cccccc-ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ...... .+.   -+.+...+.|+|||+++-+.+.+
T Consensus       238 ~~~~~~~~~~---li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          238 VLVPGRRAPI---LVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             CCCTTSSCCC---CBCHHHHTTSCTTCEEEETTCTT
T ss_pred             CCcCCCCCCe---ecCHHHHhhCCCCCEEEEEecCC
Confidence            432211 000   01234567889999887666654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.96  E-value=0.12  Score=42.88  Aligned_cols=92  Identities=11%  Similarity=-0.022  Sum_probs=59.5

Q ss_pred             CCCCcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCceeE
Q 026903          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD~  177 (231)
                      .++.+||-+|++  .|..+..+++ .|.+|+++. +++-++.+++.-.       -.++...-.+.      ...+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA-------EEVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC-------SEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC-------cEEEECCCchHHHHHHHHccCCccE
Confidence            456899999983  5888888887 888998885 7887887766321       12232221111      11235999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~  214 (231)
                      |+....-        ...+..+.++| +++|+++.+..
T Consensus       235 v~d~~g~--------~~~~~~~~~~l~~~~G~iv~~g~  264 (371)
T 3gqv_A          235 ALDCITN--------VESTTFCFAAIGRAGGHYVSLNP  264 (371)
T ss_dssp             EEESSCS--------HHHHHHHHHHSCTTCEEEEESSC
T ss_pred             EEECCCc--------hHHHHHHHHHhhcCCCEEEEEec
Confidence            9954321        13466777888 69999877653

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=90.85  E-value=0.87  Score=35.32  Aligned_cols=75  Identities=12%  Similarity=0.087  Sum_probs=54.9

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+...           -
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            44578888887765   3455566699999999999998887777665433  468999999988311           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        82 g~id~lv~nAg   92 (257)
T 3imf_A           82 GRIDILINNAA   92 (257)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36899998754

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=90.80  E-value=3.4  Score=31.31  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-CCcee
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-TELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-~~~fD  176 (231)
                      .++++||-.|++.|   .++..|++.|.+|++++.++..++...+..      ..++++.+|+.+..      . -+.+|
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc------cCCCcEEecCCCHHHHHHHHHHcCCCC
Confidence            45678888887554   234445558999999999987665544332      13677789988721      1 23689


Q ss_pred             EEEeCCcc
Q 026903          177 LIFDYTFF  184 (231)
Q Consensus       177 ~i~~~~~~  184 (231)
                      +++.+...
T Consensus        79 ~vi~~Ag~   86 (244)
T 1cyd_A           79 LLVNNAAL   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99987553

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.58  E-value=0.55  Score=44.05  Aligned_cols=68  Identities=13%  Similarity=-0.021  Sum_probs=50.3

Q ss_pred             CCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCC------------C----CC
Q 026903          109 KGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF------------T----WC  170 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~------------~----~~  170 (231)
                      ..+++|+.||.|.++.-|...|.  .+.++|+++.+++.-+.|..      ...++..|+.            +    ..
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhhc
Confidence            35999999999999999988886  57899999999998887763      2445555532            1    11


Q ss_pred             -CCCceeEEEeCC
Q 026903          171 -PTELFDLIFDYT  182 (231)
Q Consensus       171 -~~~~fD~i~~~~  182 (231)
                       ..+.+|+|+...
T Consensus       614 p~~~~vDll~GGp  626 (1002)
T 3swr_A          614 PQKGDVEMLCGGP  626 (1002)
T ss_dssp             CCTTTCSEEEECC
T ss_pred             ccCCCeeEEEEcC
Confidence             234689998653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.49  E-value=0.59  Score=36.26  Aligned_cols=76  Identities=8%  Similarity=-0.171  Sum_probs=55.2

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~  173 (231)
                      ..++++|-.|++.|   ..+..|++.|.+|+.++.++..++...+.+...+  .++.++.+|+.+...          .+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            45678999998876   3455666689999999999887777666554432  468999999988210          14


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      ..|+++.+...
T Consensus        83 ~id~lv~nAg~   93 (252)
T 3h7a_A           83 PLEVTIFNVGA   93 (252)
T ss_dssp             CEEEEEECCCC
T ss_pred             CceEEEECCCc
Confidence            78999987553

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.42  E-value=0.087  Score=43.69  Aligned_cols=92  Identities=16%  Similarity=0.059  Sum_probs=57.0

Q ss_pred             CCCCcEEEec-CC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903          107 LPKGRALVPG-CG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiG-cG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~  179 (231)
                      .++.+||-.| +| .|..+..+++ .|.+|++++ +++..+.+++.-.     +  .++..+-.+    ......+|+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa-----~--~v~~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGA-----D--DVIDYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC-----S--EEEETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCC-----C--EEEECCchHHHHHHhhcCCCCEEE
Confidence            3568999999 44 4788888877 788999998 6766777654311     1  122211111    11124699998


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ....-..       ..+....++|+++|+++.+.
T Consensus       254 d~~g~~~-------~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          254 DNVGGST-------ETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             ESSCTTH-------HHHGGGGBCSSSCCEEEESC
T ss_pred             ECCCChh-------hhhHHHHHhhcCCcEEEEeC
Confidence            6433211       13466778899999987654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=90.31  E-value=1.1  Score=35.31  Aligned_cols=74  Identities=12%  Similarity=0.078  Sum_probs=52.8

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCce
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~f  175 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.++.++...+.+.+..     ..++.++.+|+.+..       .-+..
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~i   87 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGA   87 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence            355678998887765   344555668999999999988776655433     246899999998821       11478


Q ss_pred             eEEEeCCcc
Q 026903          176 DLIFDYTFF  184 (231)
Q Consensus       176 D~i~~~~~~  184 (231)
                      |+++.+...
T Consensus        88 D~lv~nAg~   96 (291)
T 3rd5_A           88 DVLINNAGI   96 (291)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCcC
Confidence            999987554

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=90.28  E-value=1.2  Score=34.37  Aligned_cols=73  Identities=18%  Similarity=0.113  Sum_probs=45.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|--|++.|   ..+..|++.|.+|+.++.+++..+...+..     ..++.++.+|+.+...           -
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45678999998776   345566669999999999887655544332     2358899999988311           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        80 g~id~lv~nAg~   91 (257)
T 3tpc_A           80 GHVHGLVNCAGT   91 (257)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=90.28  E-value=1  Score=35.06  Aligned_cols=79  Identities=13%  Similarity=0.001  Sum_probs=55.3

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.++.+++.++...+.+.......++.++.+|+.+...           
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            455678999998776   345566669999999999998877766655431112348899999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        85 ~g~id~lvnnAg~   97 (265)
T 3lf2_A           85 LGCASILVNNAGQ   97 (265)
T ss_dssp             HCSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1368999987554

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.13  E-value=1.5  Score=32.61  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             cEEEecCCCchHH----HHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026903          111 RALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (231)
Q Consensus       111 ~vLDiGcG~G~~~----~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~  184 (231)
                      +||-.|+ +|..+    ..|++.|.+|++++.++.......         .+++++.+|+.+...  -..+|+|+.....
T Consensus         2 kvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             eEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            6777775 34333    344458999999999987544321         258899999987432  1368999977554


Q ss_pred             cccChHHHHHHHHHHHhhcCCC--cEEEE
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPD--GELIT  211 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pg--G~l~~  211 (231)
                      ..-...........+.+.++..  +.+++
T Consensus        72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~  100 (221)
T 3ew7_A           72 SPDEAEKHVTSLDHLISVLNGTVSPRLLV  100 (221)
T ss_dssp             STTTTTSHHHHHHHHHHHHCSCCSSEEEE
T ss_pred             CccccchHHHHHHHHHHHHHhcCCceEEE
Confidence            3211122223344555555543  45544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.11  E-value=1.6  Score=33.31  Aligned_cols=92  Identities=10%  Similarity=-0.023  Sum_probs=58.5

Q ss_pred             CcEEEecCCC-chH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEeCC
Q 026903          110 GRALVPGCGT-GYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~-G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~~~  182 (231)
                      .+|+-+|+|. |.. +..|.+.|. |+++|.+++.++.+.     .    .+.++.+|..+.     ..-..+|.|++..
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKANVRGARAVIVDL   79 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence            6899999863 322 233334677 999999998776554     1    267899998872     1124688888532


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                           +++.....+....+.+.|+..++.....+
T Consensus        80 -----~~d~~n~~~~~~a~~~~~~~~iia~~~~~  108 (234)
T 2aef_A           80 -----ESDSETIHCILGIRKIDESVRIIAEAERY  108 (234)
T ss_dssp             -----SCHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred             -----CCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence                 22333445566677788887776655443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=90.06  E-value=0.45  Score=40.24  Aligned_cols=89  Identities=16%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .+.+++|+-+|+|. |......++ .|.+|+++|.++.....+...    +    ..  ..++.+..  ...|+|+....
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~----G----~~--v~~Leeal--~~ADIVi~atg  284 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMD----G----FR--LVKLNEVI--RQVDIVITCTG  284 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CE--ECCHHHHT--TTCSEEEECSS
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHc----C----CE--eccHHHHH--hcCCEEEECCC
Confidence            45778999999997 655555554 888999999998654444321    1    11  22333333  25788887422


Q ss_pred             ccc-cChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCA-IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      -.+ +.        .+....||+|++|+-+..
T Consensus       285 t~~lI~--------~e~l~~MK~gailINvgr  308 (435)
T 3gvp_A          285 NKNVVT--------REHLDRMKNSCIVCNMGH  308 (435)
T ss_dssp             CSCSBC--------HHHHHHSCTTEEEEECSS
T ss_pred             CcccCC--------HHHHHhcCCCcEEEEecC
Confidence            222 22        246678899997765543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=89.96  E-value=0.97  Score=35.28  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             CCCCcEEEecC-CCchHHH----HhcCCCCeEEEEeCChHH-HHHHHHHhccCCCCCceEEEEccCCCCC------C---
Q 026903          107 LPKGRALVPGC-GTGYDVV----AMASPERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKADFFTWC------P---  171 (231)
Q Consensus       107 ~~~~~vLDiGc-G~G~~~~----~l~~~~~~v~~iD~s~~~-i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~---  171 (231)
                      +.++++|-.|+ |+|....    .|++.|.+|+.++.++.. ++...+..     ..++.++.+|+.+..      .   
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-----PAKAPLLELDVQNEEHLASLAGRVT   79 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-----SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-----CCCceEEEccCCCHHHHHHHHHHHH
Confidence            34578999998 3444444    445589999999988754 23332221     235778999998821      0   


Q ss_pred             --CC---ceeEEEeCCcccc-----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEEc
Q 026903          172 --TE---LFDLIFDYTFFCA-----------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       172 --~~---~fD~i~~~~~~~~-----------~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~~  214 (231)
                        -+   .+|+++.+.....           .+.++..           .+++.+...|+++|.++.+..
T Consensus        80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss  149 (269)
T 2h7i_A           80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDF  149 (269)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcC
Confidence              12   7999998754322           2223222           345566666777788776653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.94  E-value=0.5  Score=38.57  Aligned_cols=91  Identities=11%  Similarity=-0.006  Sum_probs=56.3

Q ss_pred             CcEEEe-cCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCceeEEE
Q 026903          110 GRALVP-GCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFDLIF  179 (231)
Q Consensus       110 ~~vLDi-GcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD~i~  179 (231)
                      .+||-. |+| .|..+..+++ .|.+|++++.+++.++.+++.-.     +  .++..+-.+..       ....+|+|+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga-----~--~~~~~~~~~~~~~v~~~~~~~g~D~vi  238 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGA-----A--HVLNEKAPDFEATLREVMKAEQPRIFL  238 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTC-----S--EEEETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----C--EEEECCcHHHHHHHHHHhcCCCCcEEE
Confidence            455554 443 3666666666 78899999999998888876421     1  22222212211       113699999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ....-     +    .+..+.++|+++|.++++....
T Consensus       239 d~~g~-----~----~~~~~~~~l~~~G~iv~~G~~~  266 (349)
T 3pi7_A          239 DAVTG-----P----LASAIFNAMPKRARWIIYGRLD  266 (349)
T ss_dssp             ESSCH-----H----HHHHHHHHSCTTCEEEECCCSC
T ss_pred             ECCCC-----h----hHHHHHhhhcCCCEEEEEeccC
Confidence            64332     1    2366788999999998876433

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=89.91  E-value=0.87  Score=35.33  Aligned_cols=77  Identities=12%  Similarity=-0.015  Sum_probs=55.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++++|--|++.|   ..+..|++.|.+|+.+|.+++..+...+.+...+  .++.++.+|+.+...           
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            455678898888776   3455566689999999999988777666554432  468999999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        87 ~g~id~lv~nAg~   99 (256)
T 3gaf_A           87 FGKITVLVNNAGG   99 (256)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1368999987554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=89.78  E-value=2.5  Score=31.93  Aligned_cols=75  Identities=13%  Similarity=-0.040  Sum_probs=51.1

Q ss_pred             CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-cCCCCCceEEEEccCCCC------CCC-----C
Q 026903          109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTW------CPT-----E  173 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~------~~~-----~  173 (231)
                      ++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+. ..  ..++.++.+|+.+.      ...     +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ--GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            357888887665   3445555689999999999887776655442 21  14689999999882      111     3


Q ss_pred             ceeEEEeCCccc
Q 026903          174 LFDLIFDYTFFC  185 (231)
Q Consensus       174 ~fD~i~~~~~~~  185 (231)
                      ..|+++.+....
T Consensus        80 ~id~li~~Ag~~   91 (235)
T 3l77_A           80 DVDVVVANAGLG   91 (235)
T ss_dssp             SCSEEEECCCCC
T ss_pred             CCCEEEECCccc
Confidence            689999876543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=89.72  E-value=3.5  Score=32.34  Aligned_cols=75  Identities=15%  Similarity=0.056  Sum_probs=46.3

Q ss_pred             CCCCcEEEecCCC-chH----HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          107 LPKGRALVPGCGT-GYD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~----~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      +.++++|-.|++. |..    +..|++.|.+|+.++.++..-+...+.....+   ++.++.+|+.+...          
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~   95 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG---SDLVVKCDVSLDEDIKNLKKFLEE   95 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            4567899999762 333    34455589999999988752222222211111   36788999988210          


Q ss_pred             -CCceeEEEeCCcc
Q 026903          172 -TELFDLIFDYTFF  184 (231)
Q Consensus       172 -~~~fD~i~~~~~~  184 (231)
                       -+..|+++.+...
T Consensus        96 ~~g~iD~lv~~Ag~  109 (285)
T 2p91_A           96 NWGSLDIIVHSIAY  109 (285)
T ss_dssp             HTSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1368999987653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=89.51  E-value=1.5  Score=34.67  Aligned_cols=76  Identities=18%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45678999998776   3445566689999999999988877766654432  468899999988311           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            378999987554

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=89.45  E-value=1.8  Score=35.03  Aligned_cols=90  Identities=10%  Similarity=-0.049  Sum_probs=60.4

Q ss_pred             CcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEe
Q 026903          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD  180 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~  180 (231)
                      ++|+-+|+  |..+..+++    .|. |+.+|.+++.++ +++.        .+.++.+|..+..     .-..+|.+++
T Consensus       116 ~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~--------~~~~i~gd~~~~~~L~~a~i~~a~~vi~  183 (336)
T 1lnq_A          116 RHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLRS--------GANFVHGDPTRVSDLEKANVRGARAVIV  183 (336)
T ss_dssp             CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHT--------TCEEEESCTTSHHHHHHTCSTTEEEEEE
T ss_pred             CCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhC--------CcEEEEeCCCCHHHHHhcChhhccEEEE
Confidence            57888887  455555544    677 999999999887 5541        3789999998821     1247888885


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..     +++...-.+....+.+.|+..++.....+
T Consensus       184 ~~-----~~d~~n~~~~~~ar~~~~~~~iiar~~~~  214 (336)
T 1lnq_A          184 DL-----ESDSETIHCILGIRKIDESVRIIAEAERY  214 (336)
T ss_dssp             CC-----SSHHHHHHHHHHHHTTCTTSEEEEECSSG
T ss_pred             cC-----CccHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            32     22344445566677788887776655443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.30  E-value=1.8  Score=33.60  Aligned_cols=77  Identities=16%  Similarity=0.091  Sum_probs=55.8

Q ss_pred             CCCCcEEEecC-CCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          107 LPKGRALVPGC-GTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       107 ~~~~~vLDiGc-G~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      +.++++|-.|+ |.|   .++..|++.|.+|+.++.+++.++...+.+.... ..++.++.+|+.+...           
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            45678999997 555   3456667799999999999988877766654332 2469999999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            1368999987654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.30  E-value=1.7  Score=34.58  Aligned_cols=92  Identities=11%  Similarity=0.013  Sum_probs=55.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhc-CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~-~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~fD~i~~~~  182 (231)
                      .+.+++|+-+|+|. |......+ ..|.+|+++|.+++..+.+.+    .+    +.+.. .++.+..  ...|+|+...
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----~g----~~~~~~~~l~~~l--~~aDvVi~~~  221 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE----MG----MEPFHISKAAQEL--RDVDVCINTI  221 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT----SEEEEGGGHHHHT--TTCSEEEECC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----CC----CeecChhhHHHHh--cCCCEEEECC
Confidence            45678999999875 44433333 378899999999876554432    11    23322 1222222  3689998765


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..+.+..        .....|+||++++-+.+.
T Consensus       222 p~~~i~~--------~~l~~mk~~~~lin~ar~  246 (293)
T 3d4o_A          222 PALVVTA--------NVLAEMPSHTFVIDLASK  246 (293)
T ss_dssp             SSCCBCH--------HHHHHSCTTCEEEECSST
T ss_pred             ChHHhCH--------HHHHhcCCCCEEEEecCC
Confidence            5443432        234578999977655443

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=89.18  E-value=6.2  Score=30.22  Aligned_cols=69  Identities=10%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             cEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCcee
Q 026903          111 RALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELFD  176 (231)
Q Consensus       111 ~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~fD  176 (231)
                      ++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+...     .++.++.+|+.+..           .-+..|
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   76 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWCNID   76 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            5666676554   3455566689999999999887766555442     25889999998721           113789


Q ss_pred             EEEeCCcc
Q 026903          177 LIFDYTFF  184 (231)
Q Consensus       177 ~i~~~~~~  184 (231)
                      +++.+...
T Consensus        77 ~lvnnAg~   84 (248)
T 3asu_A           77 ILVNNAGL   84 (248)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99987543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.15  E-value=1.4  Score=34.65  Aligned_cols=75  Identities=13%  Similarity=-0.004  Sum_probs=53.7

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      .++++|--|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3568999998766   3455666689999999999988877766654433  468999999988321           13


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      ..|+++.+...
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            68999987543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=89.11  E-value=0.44  Score=38.70  Aligned_cols=56  Identities=14%  Similarity=0.215  Sum_probs=40.0

Q ss_pred             ceEEE-EccCCC---CCCCCceeEEEeCCccccc------C---hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          158 FVSFL-KADFFT---WCPTELFDLIFDYTFFCAI------E---PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       158 ~i~~~-~~d~~~---~~~~~~fD~i~~~~~~~~~------~---~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ...++ ++|..+   ..++++||+|++...+..-      .   .+.....+..+.++|+|||.+++..
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~  106 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG  106 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            35677 899877   3456789999987655321      0   1244677888899999999988754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.10  E-value=1.2  Score=34.88  Aligned_cols=74  Identities=8%  Similarity=-0.068  Sum_probs=53.0

Q ss_pred             CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CCc
Q 026903          109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL  174 (231)
Q Consensus       109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~~  174 (231)
                      ++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -+.
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467888888765   3445566689999999999988877766554432  468889999988311           136


Q ss_pred             eeEEEeCCcc
Q 026903          175 FDLIFDYTFF  184 (231)
Q Consensus       175 fD~i~~~~~~  184 (231)
                      .|+++.+...
T Consensus        82 iD~lVnnAG~   91 (264)
T 3tfo_A           82 IDVLVNNAGV   91 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999987543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=89.06  E-value=1.9  Score=33.41  Aligned_cols=75  Identities=19%  Similarity=0.078  Sum_probs=46.6

Q ss_pred             CCCCcEEEecCCC-chH----HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903          107 LPKGRALVPGCGT-GYD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~----~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------  171 (231)
                      +.++++|-.|++. |..    +..|++.|.+|+.++.+++.-+...+.....+   .+.++.+|+.+...          
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            4457899999862 333    34445589999999998752222222222111   36789999988321          


Q ss_pred             -CCceeEEEeCCcc
Q 026903          172 -TELFDLIFDYTFF  184 (231)
Q Consensus       172 -~~~fD~i~~~~~~  184 (231)
                       -+..|+++.+...
T Consensus        83 ~~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           83 AFGGLDYLVHAIAF   96 (261)
T ss_dssp             HHSSEEEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1368999987653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=88.88  E-value=1.4  Score=34.44  Aligned_cols=77  Identities=17%  Similarity=0.047  Sum_probs=51.8

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~  173 (231)
                      .++++|-.|++.|   .++..|++.|.+|++++.++..++...+.+...+...++.++.+|+.+...           -+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4568888887654   234445558999999999988776655544433323468889999988321           13


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                      .+|+|+.+...
T Consensus       111 ~iD~vi~~Ag~  121 (279)
T 1xg5_A          111 GVDICINNAGL  121 (279)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=88.88  E-value=5.4  Score=30.15  Aligned_cols=72  Identities=21%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD  176 (231)
                      +++++||-.|++.|   ..+..|++.|.+|+.++.++..++...+...      .+.++.+|+.+..       .-+.+|
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~id   78 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC------CCCEEEEeCCCHHHHHHHHHHcCCCC
Confidence            45678888887654   2344455689999999999876655443321      3567789988721       123689


Q ss_pred             EEEeCCcc
Q 026903          177 LIFDYTFF  184 (231)
Q Consensus       177 ~i~~~~~~  184 (231)
                      +++.+...
T Consensus        79 ~vi~~Ag~   86 (244)
T 3d3w_A           79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99987543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.86  E-value=1.3  Score=35.33  Aligned_cols=86  Identities=10%  Similarity=0.067  Sum_probs=53.0

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      .+|.-||+|. | ..+..|++.|..|++.|.+++.++.+.+.-        +.....+..+..  ...|+|+..     +
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g--------~~~~~~~~~e~~--~~aDvvi~~-----v   72 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG--------ACGAAASAREFA--GVVDALVIL-----V   72 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT--------CSEEESSSTTTT--TTCSEEEEC-----C
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC--------CccccCCHHHHH--hcCCEEEEE-----C
Confidence            5788999885 3 344555668999999999999887776531        111233444433  346888743     2


Q ss_pred             Ch-HHHHHHH---HHHHhhcCCCcEEE
Q 026903          188 EP-EMRAAWA---QKIKDFLKPDGELI  210 (231)
Q Consensus       188 ~~-~~~~~~l---~~~~~~L~pgG~l~  210 (231)
                      ++ .....++   +.+...+++|..++
T Consensus        73 p~~~~~~~v~~~~~~l~~~l~~g~ivv   99 (303)
T 3g0o_A           73 VNAAQVRQVLFGEDGVAHLMKPGSAVM   99 (303)
T ss_dssp             SSHHHHHHHHC--CCCGGGSCTTCEEE
T ss_pred             CCHHHHHHHHhChhhHHhhCCCCCEEE
Confidence            22 2334444   55667777777554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=88.81  E-value=2.2  Score=29.28  Aligned_cols=90  Identities=9%  Similarity=-0.039  Sum_probs=50.8

Q ss_pred             CCcEEEecCCCchHHHHh----cCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CC--CCceeEEE
Q 026903          109 KGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP--TELFDLIF  179 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l----~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~i~  179 (231)
                      ..+|+-+|+|  ..+..+    .+.|.+|+.+|.+++.++.+++    .    ...++.+|..+.   ..  -..+|+|+
T Consensus         6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            4689999985  444333    3478899999999876543322    1    135667776652   11  24689988


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ......    ......+....+.+.++ .+++..
T Consensus        76 ~~~~~~----~~~~~~~~~~~~~~~~~-~ii~~~  104 (144)
T 2hmt_A           76 VAIGAN----IQASTLTTLLLKELDIP-NIWVKA  104 (144)
T ss_dssp             ECCCSC----HHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             ECCCCc----hHHHHHHHHHHHHcCCC-eEEEEe
Confidence            543321    12222344455556675 555433

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=88.74  E-value=1.8  Score=33.30  Aligned_cols=77  Identities=19%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.+++||-.|++.|   .++..|++.|.+|+.++.++...+...+.+...+  .++.++.+|+.+...           
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345678898887654   2344455589999999999877665554443322  358999999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+.+|+++.+...
T Consensus        88 ~~~id~vi~~Ag~  100 (260)
T 3awd_A           88 EGRVDILVACAGI  100 (260)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1368999987543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=88.70  E-value=3.2  Score=33.89  Aligned_cols=77  Identities=13%  Similarity=-0.006  Sum_probs=51.7

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHH-------HHHHHHHhccCCCCCceEEEEccCCCCCC----
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIA-------IKKAEELSSSLPNAKFVSFLKADFFTWCP----  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~-------i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----  171 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.++.+++.       ++.+.+.+...+  .++.++.+|+.+...    
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            345678999998876   3456677799999999988652       333333333222  468899999988321    


Q ss_pred             -------CCceeEEEeCCcc
Q 026903          172 -------TELFDLIFDYTFF  184 (231)
Q Consensus       172 -------~~~fD~i~~~~~~  184 (231)
                             -+..|+++.+...
T Consensus       120 ~~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence                   1379999987654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=88.41  E-value=1.9  Score=33.65  Aligned_cols=77  Identities=13%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      ...+++||-.|++.|   .++..|++.|.+|++++.++..++...+.+...+  .++.++.+|+.+...           
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            345678998887654   2334445589999999999887766655444332  368999999988210           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+.+|+++.+...
T Consensus       106 ~g~iD~li~~Ag~  118 (272)
T 1yb1_A          106 IGDVSILVNNAGV  118 (272)
T ss_dssp             TCCCSEEEECCCC
T ss_pred             CCCCcEEEECCCc
Confidence            1368999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.32  E-value=1.8  Score=35.13  Aligned_cols=96  Identities=19%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc----CCCCC--ceEEEEccCCCCCCCCceeEEEeC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS----LPNAK--FVSFLKADFFTWCPTELFDLIFDY  181 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~----~~~~~--~i~~~~~d~~~~~~~~~fD~i~~~  181 (231)
                      ++|.-+|+|. | .++..|++.|.+|+.+|.+++.++..++....    .....  ++.....+..+..  ..+|+|+..
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--KDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH--TTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH--hcCCEEEEe
Confidence            5899999986 3 34455556888999999999888777664210    00000  0000111111111  358988854


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      -.     ......+++.+...++++..++..
T Consensus        83 v~-----~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           83 VP-----AIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             SC-----GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CC-----chHHHHHHHHHHHhCCCCCEEEEc
Confidence            32     223356778888889988765443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.14  E-value=0.28  Score=40.63  Aligned_cols=101  Identities=13%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~  183 (231)
                      .++.+|+-+|+|. |..+..++. .|.+|+++|.+++.++.+.+....     .+.....+..+.. .-..+|+|+....
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~-----~~~~~~~~~~~l~~~~~~~DvVi~~~g  238 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG-----RVITLTATEANIKKSVQHADLLIGAVL  238 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT-----SEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc-----eEEEecCCHHHHHHHHhCCCEEEECCC
Confidence            4568999999863 444333333 888999999999887776654321     1211111111100 0025899986543


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....  ....-+.+...+.|++||+++.+..
T Consensus       239 ~~~~--~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          239 VPGA--KAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             ---------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             CCcc--ccchhHHHHHHHhhcCCCEEEEEec
Confidence            2210  0000123567788899998765544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.14  E-value=1.1  Score=35.23  Aligned_cols=77  Identities=17%  Similarity=0.058  Sum_probs=55.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456789999998766   3455666699999999999887776665554432  368899999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus       107 ~g~iD~lvnnAg~  119 (276)
T 3r1i_A          107 LGGIDIAVCNAGI  119 (276)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1368999987554

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=88.08  E-value=2.3  Score=32.96  Aligned_cols=76  Identities=17%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|.+|+.++.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            44578898888765   3345556689999999999887776655544332  358899999988321           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +.+|+++.+...
T Consensus        83 g~id~lv~nAg~   94 (262)
T 1zem_A           83 GKIDFLFNNAGY   94 (262)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	5e-25
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-16
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	8e-10
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	1e-08
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-06
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	5e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	5e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	7e-05
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	7e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	7e-05
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	1e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.003
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.003

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 5e-25
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 21/175 (12%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
           W+  W  G T +   Q   ++  HL        G R   P CG   ++   A     VVG
Sbjct: 13  WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVG 72

Query: 136 LEISDIAIKKAEELSSSLP----------------NAKFVSFLKADFFTWCPTELFD--L 177
           +EIS++ I++     +                   ++  +S      F    T +    +
Sbjct: 73  VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDM 132

Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISDHVGGPPYKVSVSE 231
           I+D     AI P  R  +A  +   L    + +  +         GPP+ V  +E
Sbjct: 133 IWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAE 187

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 72.1 bits (175), Expect = 3e-16
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 14/146 (9%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159
           +      +P  R LVP CG   D+  ++    +VVG E+S+ A+++        P+    
Sbjct: 12  YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQ 71

Query: 160 SFLKADFFTWC-------------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD 206
              K                            +D     A+  +MR  + Q ++  +   
Sbjct: 72  GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131

Query: 207 GE-LITLMFPISDHVGGPPYKVSVSE 231
              L+  +      + GPP+ V  + 
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTW 157

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.6 bits (130), Expect = 8e-10
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 4/134 (2%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
           L  +  +  GR L  GCG G + + +A+    V   + +  ++   E + ++       +
Sbjct: 23  LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQT 82

Query: 161 FLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---PIS 217
            L          E +D I        +E +        ++   KP G  + +     P  
Sbjct: 83  DLVDLNTLTFDGE-YDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF 141

Query: 218 DHVGGPPYKVSVSE 231
               G P+     E
Sbjct: 142 PCTVGFPFAFKEGE 155

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 9/137 (6%)

Query: 95  APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS 152
           A II  L         + L  G   G     +A    +  V  +E +   +++  +  + 
Sbjct: 61  AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWA--QKIKDFLKPDGELI 210
             N   +           P E  +++           +   A    +  K FLK  G  +
Sbjct: 121 RENIIPI-----LGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

Query: 211 TLMFPISDHVGGPPYKV 227
             +   S  V   P ++
Sbjct: 176 IAIKARSIDVTKDPKEI 192

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 86  LTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIA 142
           ++  D      II+     G  P    L  G G+G     +      +  +  +E  +  
Sbjct: 69  ISEIDASY---IIMRC---GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 122

Query: 143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
           +KKA +  S   +   V   ++D   +    + D ++D       +P       QKI   
Sbjct: 123 LKKAMDNLSEFYDIGNVRTSRSDIADF----ISDQMYDAVIADIPDPWN---HVQKIASM 175

Query: 203 LKPDGELI 210
           +KP     
Sbjct: 176 MKPGSVAT 183

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 38/164 (23%)

Query: 78  WEKCWEEGLTPWDIG--------------------QPAPIIVHLHQSGA----------- 106
           W + W   L P                        +P       H               
Sbjct: 59  WLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL 118

Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
            P  + L  G G+G   +A        +G++I  + + +AE   ++  N     FL+   
Sbjct: 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA--NAKRNGVRPRFLEGSL 176

Query: 167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
               P               +  E+ AA A + ++ L P G  +
Sbjct: 177 EAALPF-----GPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
            + R L  G G G+  +A +   +  +G++ +   ++ A   +                 
Sbjct: 16  AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219
              P + FD+I                  +++   LK DG  + +     + 
Sbjct: 76  LPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPED 125

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           I+       L     L   CGTG     +    +    +++S   + +AE    S     
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKP 86

Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            ++                     +    I+ +    + + + + LK  G  I
Sbjct: 87  RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 17/136 (12%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAE 147
           I  P  I + L      P    L  G G+G   + ++     +  V+  E+       A+
Sbjct: 81  ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 140

Query: 148 E----------LSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQ 197
           +          LS        V F+  D       ++  L FD      + P        
Sbjct: 141 KNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIKSLTFDAVALDMLNPH---VTLP 196

Query: 198 KIKDFLKPDGELITLM 213
                LK  G     +
Sbjct: 197 VFYPHLKHGGVCAVYV 212

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 4/124 (3%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159
           L +         L  GCG G D++    +      G++I++++I  A   + ++     V
Sbjct: 17  LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV 76

Query: 160 SFLKADFFTWCP---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
            F   D +        E   +   ++F  A         AQ+        G    +  P 
Sbjct: 77  FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136

Query: 217 SDHV 220
            D +
Sbjct: 137 RDVI 140

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
           P  R L  G G+G  +   A        G+++S +   +A+  +  L  ++ V F+  D 
Sbjct: 33  PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92

Query: 167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
             +   E  D+               A   + +   LKP G ++
Sbjct: 93  AGYVANEKCDVAA--CVGATWIAGGFAGAEELLAQSLKPGGIML 134

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEI----SDIAIKKAEELSSSLPNAKFV- 159
                 R L   CGTG D + +      V  ++        A+K+           K+V 
Sbjct: 53  RQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVI 112

Query: 160 ---SFLKADFFTWCPTELFDLIFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELIT 211
              ++L  D           +I     F  +     +        + I   ++P G L+ 
Sbjct: 113 EEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172

Query: 212 LMF---PISDHVGGPPYK 226
                  I      PP K
Sbjct: 173 DHRNYDYILSTGCAPPGK 190

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSL--------PNAK 157
                +  G G G  V+ +A  +  ++  G+E +DI  K AE +                
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 158 FVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
             +  + DF +      + +    +    A  PE+     ++    +K  G +++ 
Sbjct: 211 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQ-LKERFANMKEGGRIVSS 265

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
               A+  GCGTG   + +A   R V  ++ +  AI   E           V+ ++ D  
Sbjct: 33  KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92

Query: 168 -TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              C     D+         ++  +R    +     LKP G +I
Sbjct: 93  EALCKIPDIDIAVVGGSGGELQEILRIIKDK-----LKPGGRII 131

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 11/126 (8%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAE 147
           +  P      +H+    P  R L  G G+G   +++     P   V+  E      + A 
Sbjct: 79  VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR 138

Query: 148 ELSSSLPNAKF--VSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205
              S            + +D      +EL D   D      + P         +   L  
Sbjct: 139 RNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVDRAVLDMLAPW---EVLDAVSRLLVA 192

Query: 206 DGELIT 211
            G L+ 
Sbjct: 193 GGVLMV 198

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 23/120 (19%), Positives = 31/120 (25%), Gaps = 18/120 (15%)

Query: 108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSL---------PNA 156
                +  G G G  VV  A         G EI D A          L            
Sbjct: 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275

Query: 157 KFVSFLKADFFTWCPTEL----FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                LK  F             D+I    F    + ++      KI    K   ++I+L
Sbjct: 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNNF--LFDEDLNKKVE-KILQTAKVGCKIISL 332

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
              R L  G  +G  V  +A    E  +  +E S    +K  EL     N   +     D
Sbjct: 56  GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPL---LFD 112

Query: 166 FFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225
                         D  +    +           + FLK  GE++ ++   S      P 
Sbjct: 113 ASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE 172

Query: 226 KV 227
           +V
Sbjct: 173 EV 174

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 98  IVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA 156
           +  L Q  AL      L    G G+   A A   + VV  ++++  +K A        + 
Sbjct: 4   LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 63

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
           +               E F ++                   +    LK  G+L+ +    
Sbjct: 64  QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVS--EAYRVLKKGGQLLLVDNSA 121

Query: 217 SDH 219
            ++
Sbjct: 122 PEN 124

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 12/112 (10%)

Query: 87  TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKK 145
           T       A  ++ ++  G +     +  G G G             V   +I   AI+ 
Sbjct: 29  TDASTA--AYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 86

Query: 146 AEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAA 194
           A+       N   V+F+ AD         T + +  F      +    +  A
Sbjct: 87  AKR------NCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKA 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.94
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.9
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.9
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.88
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.86
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.84
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.84
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.84
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.83
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.82
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.81
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.8
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.8
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.79
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.78
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.78
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.78
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.78
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.77
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.77
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.74
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.74
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.72
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.7
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.69
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.68
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.68
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.68
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.66
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.65
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.64
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.64
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.62
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.61
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.6
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.59
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.58
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.57
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.57
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.56
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.53
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.52
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.52
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.52
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.5
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.5
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.49
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.47
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.46
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.46
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.45
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.43
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.41
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.38
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.36
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.36
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.36
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.33
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.32
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.3
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.29
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.28
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.28
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.22
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.22
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.05
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.03
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.01
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.98
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.94
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.93
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.89
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.87
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.87
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.84
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.84
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.82
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.8
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.75
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.55
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.52
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.52
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.43
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.43
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.42
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.28
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.23
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.17
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.13
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.1
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.86
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.71
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.67
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.66
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.53
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.41
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.37
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.17
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.17
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.08
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.07
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.07
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.02
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.01
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.98
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.8
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.78
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.76
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.48
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.41
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.41
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.41
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.26
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.19
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.17
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.07
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.72
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.59
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.51
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.47
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.44
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.39
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.24
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.12
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.01
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.89
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.82
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.79
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.6
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.51
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.51
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.45
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.44
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.27
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	94.27
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.17
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.13
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.07
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.01
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.92
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.89
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.88
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.85
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.76
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.71
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.61
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.58
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.26
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.23
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.71
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.69
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.61
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.37
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.27
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.03
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.93
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.84
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.46
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.34
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.16
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.83
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.71
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.31
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.14
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.0
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.46
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.41
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.41
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.95
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.56
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	88.48
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.37
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.72
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	87.58
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	87.55
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.45
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.42
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.31
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	86.23
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.21
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.87
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.8
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.35
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.12
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	83.98
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	83.78
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.74
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.33
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.3
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	83.17
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	83.04
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	81.85
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	81.82
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	81.45
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.09
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	81.08
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	80.86

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=185.58  Aligned_cols=157  Identities=22%  Similarity=0.340  Sum_probs=133.7

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      .+.|++.|.....+|+...+++.+.+++...  ..++.+|||+|||+|+.+..|++.|.+|+|+|+|+.+++.|+++...
T Consensus        10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhc
Confidence            4789999999999999999999998877653  34568999999999999999999999999999999999999887543


Q ss_pred             CC----------------CCCceEEEEccCCCC--CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          153 LP----------------NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       153 ~~----------------~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..                ...+++++++|+.+.  ...+.||+|++..+++|++++.+..+++.+.++|||||++++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1          90 SYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence            21                124799999999883  456789999999999999999999999999999999999888777


Q ss_pred             cCC-CCCCCCCCCCCCCC
Q 026903          215 PIS-DHVGGPPYKVSVSE  231 (231)
Q Consensus       215 ~~~-~~~~~~~~~~~~~~  231 (231)
                      ..+ ....||||.++.+|
T Consensus       170 ~~~~~~~~gpp~~~~~~e  187 (229)
T d2bzga1         170 SYDPTKHPGPPFYVPHAE  187 (229)
T ss_dssp             ECCTTTCCCSSCCCCHHH
T ss_pred             ccCCCCCCCCCCCCCHHH
Confidence            554 34678999987643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=4.9e-23  Score=157.32  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=103.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ..++++|||+|||+|.++..|+++|.+|+|+|+|+.+++.++++....++ +++.+...|+.+..++++||+|+|..+++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeee
Confidence            34567999999999999999999999999999999999999988876654 36899999999977788999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC---CCCCCCCCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSV  229 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~  229 (231)
                      |++++...++++++.++|+|||++++.++....+   ..+++|..+.
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKE  153 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCT
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCH
Confidence            9998899999999999999999999988765432   3345555543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.90  E-value=7.5e-24  Score=161.18  Aligned_cols=139  Identities=21%  Similarity=0.354  Sum_probs=113.6

Q ss_pred             CCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-----------CCce
Q 026903           92 GQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-----------AKFV  159 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-----------~~~i  159 (231)
                      ...++.++.++..... |+.+|||+|||+|+++..|++.|.+|+|+|+|+.+++.|+++......           ...+
T Consensus         3 ~~~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T d1pjza_           3 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   82 (201)
T ss_dssp             SSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence            3456667777776644 558999999999999999999999999999999999999998755421           2346


Q ss_pred             EEEEccCCCCCC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC-CCCCCCCCCCCC
Q 026903          160 SFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD-HVGGPPYKVSVS  230 (231)
Q Consensus       160 ~~~~~d~~~~~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~~~~~  230 (231)
                      +|+.+|+.+..+  ...||+|++..+++|++++....+++.+.++|||||.+++..+.... ...+|+|.++.+
T Consensus        83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~  156 (201)
T d1pjza_          83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQT  156 (201)
T ss_dssp             EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHH
T ss_pred             ceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHH
Confidence            889999988543  35899999999999999988999999999999999998887776543 356788877654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.3e-22  Score=156.01  Aligned_cols=116  Identities=24%  Similarity=0.286  Sum_probs=99.9

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCcee
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD  176 (231)
                      +..++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....+  .++.++.+|+.+ +.+.++||
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCce
Confidence            345555544566899999999999999999999999999999999999999876654  357889999998 55678999


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+|..+++|+++.+..++++++.++|||||++++....
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999999999998888899999999999999999876643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=5e-22  Score=154.84  Aligned_cols=115  Identities=19%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             HHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCcee
Q 026903           99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD  176 (231)
                      .++++...+ ++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....+. ++++|+++|+.+ +++.++||
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccccc
Confidence            444454444 458999999999999999999999999999999999999998876543 579999999999 45778999


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+|..+++|+++  ..++++++.++|||||+|++.++..
T Consensus        84 ~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          84 IVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             EEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9999999999953  4678999999999999999987654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=1.2e-21  Score=153.16  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=95.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+. +++.|+++|+.+ ++++++||+|+|..++
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccccccceeeeecee
Confidence            44668999999999999999999989999999999999999998776543 469999999998 5577899999999999


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +|+++  ..++++++.++|||||++++.++...
T Consensus        93 ~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~  123 (234)
T d1xxla_          93 HHFSD--VRKAVREVARVLKQDGRFLLVDHYAP  123 (234)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             ecccC--HHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence            99953  56899999999999999999877543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5e-21  Score=150.88  Aligned_cols=115  Identities=23%  Similarity=0.324  Sum_probs=98.3

Q ss_pred             HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      .+..++.... .++.+|||+|||+|..+..|++.|.+|+|+|+|+.+++.|+++....+  .+++++++|+.+...++.|
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~--~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--LKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc--ccchheehhhhhccccccc
Confidence            4555555543 344799999999999999999999999999999999999999987654  3699999999996666799


Q ss_pred             eEEEeC-CcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          176 DLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       176 D~i~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+|+|. .+++|++.++..++|+++.++|||||++++..
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            999996 57888888888999999999999999998754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.3e-21  Score=151.04  Aligned_cols=117  Identities=19%  Similarity=0.138  Sum_probs=101.4

Q ss_pred             HHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           97 IIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        97 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      .+..+.....+ |+.+|||||||+|..+..+++ .+.+|+|+|+|+.+++.|+++....++.++++|+.+|+.+..++++
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            34455555444 568999999999999999987 5789999999999999999999888888899999999999877889


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ||+|+|..+++|++  +..++++++.++|||||++++.+..
T Consensus       101 fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         101 CDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             eeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEecc
Confidence            99999999999995  3467999999999999999987653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.84  E-value=4.9e-21  Score=153.78  Aligned_cols=109  Identities=19%  Similarity=0.202  Sum_probs=97.2

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||||||+|..+..|++ .+.+|+|+|+|+.+++.|+++....++.++++|+++|+.+ ++++++||+|++..+++
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~  146 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL  146 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred             CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhh
Confidence            458999999999999999988 4789999999999999999998887777899999999999 55778999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      |++  +..++++++.++|||||+|++.++....
T Consensus       147 h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         147 HSP--DKLKVFQECARVLKPRGVMAITDPMKED  177 (282)
T ss_dssp             GCS--CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             hcc--CHHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence            996  4467999999999999999998775543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.84  E-value=7.9e-21  Score=149.57  Aligned_cols=115  Identities=18%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      +..++.....++.+|||+|||+|..+..|++.|.+|+|+|+|+.+++.|+++....+  .+++|+++|+.+....++||+
T Consensus        27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~--~~v~~~~~d~~~~~~~~~fD~  104 (246)
T d1y8ca_          27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG--LKPRLACQDISNLNINRKFDL  104 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT--CCCEEECCCGGGCCCSCCEEE
T ss_pred             HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC--ccceeeccchhhhcccccccc
Confidence            445555555666899999999999999999999999999999999999999876654  358999999999766679999


Q ss_pred             EEeC-Cccccc-ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDY-TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~-~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|. .+++|+ +++++.++++.+.++|+|||.+++...
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            9986 567776 567889999999999999999887543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.84  E-value=1.3e-20  Score=146.49  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      +..++.....++.+|||+|||+|..+..+++    ++.+|+|+|+|+.+++.|+++....+...++++..+|..+.. ..
T Consensus        29 i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-~~  107 (225)
T d1im8a_          29 IGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK  107 (225)
T ss_dssp             HHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-CC
T ss_pred             HHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-cc
Confidence            3444444456778999999999999988875    677999999999999999999887766677888988887753 35


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+|+|++..+++|+++++..++++++.++|||||.+++.++..
T Consensus       108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            7999999999999998888999999999999999999987654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-20  Score=144.25  Aligned_cols=109  Identities=16%  Similarity=0.180  Sum_probs=94.1

Q ss_pred             CCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026903          108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~  185 (231)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+++++.|+++....+. .+++|+++|+.+. .+.++||+|++..+++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccccccc
Confidence            34799999999999999987644 4899999999999999998766432 4689999999994 4567999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+++++..++++++.++|+|||.+++.+....
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~  170 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ  170 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence            99988888999999999999999998876443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.82  E-value=5.6e-20  Score=145.22  Aligned_cols=114  Identities=21%  Similarity=0.227  Sum_probs=95.7

Q ss_pred             HHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeE
Q 026903          101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDL  177 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~  177 (231)
                      ++.....++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+++....+...++.|.++|+...  ...++||+
T Consensus        17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~   96 (252)
T d1ri5a_          17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDV   96 (252)
T ss_dssp             HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred             HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceE
Confidence            3344455678999999999999999988664 89999999999999999887766666899999999762  34668999


Q ss_pred             EEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|..++||+  +.+....+++++.++|+|||++++...
T Consensus        97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            9999999997  346778999999999999999987654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.81  E-value=1.1e-19  Score=143.76  Aligned_cols=115  Identities=17%  Similarity=0.073  Sum_probs=96.8

Q ss_pred             HHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCce
Q 026903           99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELF  175 (231)
Q Consensus        99 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~f  175 (231)
                      ..++..... ++.+|||+|||+|+++..|+.+ +.+|+++|+|+.+++.|+++....   ++++|+++|+.++ ++.++|
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCcc
Confidence            445554433 4479999999999999998864 458999999999999999987644   3689999999885 456789


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+|++..+++|+++++..++++++.+.|+|||.+++.+...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            99999999999998888999999999999999999877544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=8.7e-20  Score=142.95  Aligned_cols=109  Identities=21%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             HHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCce
Q 026903           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF  175 (231)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~f  175 (231)
                      .+..++.....++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.|+++...       .++.+|+.+ ++++++|
T Consensus        31 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------~~~~~~~~~l~~~~~~f  103 (246)
T d2avna1          31 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-------NVVEAKAEDLPFPSGAF  103 (246)
T ss_dssp             HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-------CEEECCTTSCCSCTTCE
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc-------ccccccccccccccccc
Confidence            34444554455668999999999999999999999999999999999999987532       367788888 4567899


Q ss_pred             eEEEeC-CcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|+|. .+++|+++.  .++++++.++|||||++++...
T Consensus       104 D~ii~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         104 EAVLALGDVLSYVENK--DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceeeecchhhhhhhH--HHHHHHHHhhcCcCcEEEEEEC
Confidence            999985 578998644  5689999999999999988653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.80  E-value=3.1e-19  Score=141.04  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=99.8

Q ss_pred             HHHHcCCCCC-CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903          100 HLHQSGALPK-GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus       100 ~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      .++......+ ++|||||||+|.++..+++  ++.+++++|+ +++++.++++....+..++++++.+|+++..+ .+||
T Consensus        71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~D  148 (253)
T d1tw3a2          71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKAD  148 (253)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCEE
T ss_pred             HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cchh
Confidence            3344444433 7999999999999999998  5679999998 67899999998888888899999999988654 4699


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +|++..++||++++...++|++++++|||||+|++.++....
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~  190 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH  190 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            999999999999888889999999999999999998876543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.79  E-value=2.2e-19  Score=139.39  Aligned_cols=102  Identities=19%  Similarity=0.175  Sum_probs=89.2

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      ..+.+|||+|||+|.++..+++.|.+|+|+|+|+++++.|+++..     .++.++.+++.+...+++||+|++..+++|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh   93 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH   93 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccceeEe
Confidence            456799999999999999999999999999999999999998753     358999999988766789999999999999


Q ss_pred             cChHHHHHHHHHHH-hhcCCCcEEEEEEcc
Q 026903          187 IEPEMRAAWAQKIK-DFLKPDGELITLMFP  215 (231)
Q Consensus       187 ~~~~~~~~~l~~~~-~~L~pgG~l~~~~~~  215 (231)
                      +++  ..+++.++. ++|+|||.+++....
T Consensus        94 ~~d--~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          94 IDD--PVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             CSS--HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cCC--HHHHHHHHHHHhcCCCceEEEEeCC
Confidence            964  467888887 789999999887643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=1.3e-18  Score=139.15  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=99.6

Q ss_pred             HHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      +..+++...+ ++.+|||||||.|.++..+++ .|.+|+|+|+|++.++.|+++..+.++..++.+...|..++  +++|
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~f  118 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPV  118 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCC
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccch
Confidence            4445555544 568999999999999999987 58899999999999999999998888888888888887665  3689


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |.|++..+++|+..+....+++++.++|||||++++.+.
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence            999999999999988889999999999999999988653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=1e-18  Score=131.74  Aligned_cols=112  Identities=21%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCcee
Q 026903           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD  176 (231)
                      ..++... ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..+++.++++++++|+.+ +.....||
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence            3344433 446689999999999999999998889999999999999999999999888899999999888 44557899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .|++....+++     ..+++.+.+.|||||++++....
T Consensus       103 ~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         103 IAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             EEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECB
T ss_pred             EEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEeec
Confidence            99998776554     46799999999999999887654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=2.8e-18  Score=130.21  Aligned_cols=118  Identities=19%  Similarity=0.146  Sum_probs=97.4

Q ss_pred             HHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCCCCC
Q 026903           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCPTE  173 (231)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~  173 (231)
                      ....-+++.. ..++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++..+++. .++++..+|+.+..+++
T Consensus        39 ~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~  118 (194)
T d1dusa_          39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence            3333445444 345689999999999999999998889999999999999999998877654 46999999999877778


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +||+|+++.++++. .+....+++.+.+.|+|||.+++...
T Consensus       119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            99999998887654 34557899999999999999877543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.78  E-value=1.3e-18  Score=139.40  Aligned_cols=103  Identities=20%  Similarity=0.287  Sum_probs=89.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      .++.+|||+|||+|.++..+++   .+.+|+|+|+|+.+++.|+++....+  .+++|..+|+.+....++||+|+|..+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~~~~f~~~d~~~~~~~~~fD~v~~~~~  103 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELNDKYDIAICHAF  103 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--ccccccccccccccccCCceEEEEehh
Confidence            3457999999999999999987   46799999999999999999987764  368999999998655568999999999


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++|+++  ...+++++.++|||||.+++.+
T Consensus       104 l~~~~d--~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         104 LLHMTT--PETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             GGGCSS--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhcCCC--HHHHHHHHHHHcCcCcEEEEEE
Confidence            999964  3578999999999999998876

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.77  E-value=2.3e-18  Score=136.10  Aligned_cols=115  Identities=19%  Similarity=0.132  Sum_probs=99.7

Q ss_pred             HHHHHcCCCCC-CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           99 VHLHQSGALPK-GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        99 ~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      ..++.....++ .+|||||||+|.++..+++  ++.+++++|+ +++++.++++....+..+++.+..+|..++.+. +|
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~-~~  148 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TA  148 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CE
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccc-cc
Confidence            34444444444 7999999999999999998  5779999998 889999999988888888999999999986654 59


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+|++..++|+++++...++|++++++|||||+|+|.++.
T Consensus       149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            9999999999999988899999999999999999998874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=3.1e-19  Score=140.45  Aligned_cols=111  Identities=21%  Similarity=0.266  Sum_probs=93.0

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~  177 (231)
                      +.+++.....++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.|+++...+++  +++++++|+.+..+.++||+
T Consensus       110 ~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~~~~~fD~  187 (254)
T d2nxca1         110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAALPFGPFDL  187 (254)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHGGGCCEEE
T ss_pred             HHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccccccccccch
Confidence            4445555567889999999999999999999999999999999999999999988775  36789999888666789999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+++...     .....++..+.++|||||+|++.++-
T Consensus       188 V~ani~~-----~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         188 LVANLYA-----ELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhcccc-----ccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            9986544     34467889999999999999987653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.1e-17  Score=134.04  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=99.7

Q ss_pred             HHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (231)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f  175 (231)
                      +..++++..+ ++.+|||||||.|.++..+++ .|.+|+|+++|++.++.++++....++..++++...|...  .+++|
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--~~~~f  127 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--FDEPV  127 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--CCCCC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--ccccc
Confidence            4445555544 568999999999999999986 7889999999999999999999888888889998888753  35789


Q ss_pred             eEEEeCCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |.|++..+++|+.+       +....+++++.++|||||++++.++..
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            99999999999975       457899999999999999999877654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=9.6e-18  Score=134.05  Aligned_cols=115  Identities=21%  Similarity=0.199  Sum_probs=100.1

Q ss_pred             HHHHHcCC-CCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD  176 (231)
                      ..++++.. .++.+|||||||.|..+..+++ .|.+|+|+++|++.++.|+++....++.+++++..+|..+..  ++||
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD  129 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVD  129 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCS
T ss_pred             HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--cccc
Confidence            33444444 3568999999999999999887 788999999999999999999888888889999999987653  6899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .|++...++|+.......+++++.++|+|||++++.++.
T Consensus       130 ~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         130 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            999999999998777789999999999999999987764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=3.4e-18  Score=130.84  Aligned_cols=97  Identities=27%  Similarity=0.281  Sum_probs=83.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~  185 (231)
                      .++.+|||||||+|.++..+.+    ++|+|+|+.+++.|+++        ++.++++|+.+ +.++++||+|+|..+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~~----~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLKI----KIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHTC----CEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccce----EEEEeCChhhccccccc--------ccccccccccccccccccccccccccccc
Confidence            4457999999999999988853    68999999999999874        38899999998 45668999999999999


Q ss_pred             ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+++  ..++++++.++|+|||.+++.+...+
T Consensus       103 h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_         103 FVDD--PERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             GSSC--HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             cccc--cccchhhhhhcCCCCceEEEEecCCc
Confidence            9964  46799999999999999999886553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=4.8e-18  Score=136.78  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             HHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCC---CceEEEEccCCC----C
Q 026903           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA---KFVSFLKADFFT----W  169 (231)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~----~  169 (231)
                      .+.+++..  .++.+|||+|||+|..+..|++.|.+|+|+|+|+.+++.|+++.......   ....+...++..    .
T Consensus        47 ~l~~~l~~--~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T d1xvaa_          47 WLLGLLRQ--HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  124 (292)
T ss_dssp             HHHHHHHH--TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHhhh--cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence            34444443  23579999999999999999999999999999999999999877654322   134556666554    3


Q ss_pred             CCCCceeEEEeC-CcccccCh-----HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          170 CPTELFDLIFDY-TFFCAIEP-----EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       170 ~~~~~fD~i~~~-~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .+.++||+|+|. .+++|+++     ++...+|+++.++|||||+|++..+
T Consensus       125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            345689999986 47888754     4678899999999999999988654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.8e-17  Score=131.82  Aligned_cols=100  Identities=28%  Similarity=0.305  Sum_probs=84.7

Q ss_pred             HcCCCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEE
Q 026903          103 QSGALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF  179 (231)
Q Consensus       103 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~  179 (231)
                      .....++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|+++.      +++.|.++|+.+ ++++++||+|+
T Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~  152 (268)
T d1p91a_          79 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAII  152 (268)
T ss_dssp             HHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             HhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEe
Confidence            333556689999999999999999884  569999999999999998865      368999999999 56778999999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      +..+++|         ++++.++|||||+|++.+..++
T Consensus       153 ~~~~~~~---------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         153 RIYAPCK---------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             EESCCCC---------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             ecCCHHH---------HHHHHHHhCCCcEEEEEeeCCc
Confidence            9888776         3678999999999999886554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-17  Score=131.29  Aligned_cols=143  Identities=17%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             ccchhhhhccCCCCCCCCCCcHHHHHHHH----cCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHH
Q 026903           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQ----SGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEEL  149 (231)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~  149 (231)
                      .+||+.+|......+........+.+.+.    ....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++
T Consensus        14 ~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~   93 (257)
T d2a14a1          14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW   93 (257)
T ss_dssp             HHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence            46788888665443221111112222222    1234557999999999999888887655 799999999999999998


Q ss_pred             hccCCCCC----------------------------ce-EEEEccCCC-----CCCCCceeEEEeCCcccccCh--HHHH
Q 026903          150 SSSLPNAK----------------------------FV-SFLKADFFT-----WCPTELFDLIFDYTFFCAIEP--EMRA  193 (231)
Q Consensus       150 ~~~~~~~~----------------------------~i-~~~~~d~~~-----~~~~~~fD~i~~~~~~~~~~~--~~~~  193 (231)
                      +...+...                            .+ .....+...     +.+.++||+|++..+++|++.  ++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~  173 (257)
T d2a14a1          94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR  173 (257)
T ss_dssp             HHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence            76543211                            01 111122111     445678999999999999864  5778


Q ss_pred             HHHHHHHhhcCCCcEEEEEEccCC
Q 026903          194 AWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       194 ~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .+++++.++|||||++++.++...
T Consensus       174 ~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         174 AALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             HHHHHHHhccCCCcEEEEEEeccc
Confidence            899999999999999999887553

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.1e-17  Score=126.25  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCC
Q 026903           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP  171 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~  171 (231)
                      +.+..+......++++|||||||+|..+..+++.+ .+|+++|+|+.+++.|+++.....  .++.++..++..   ..+
T Consensus        41 ~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~  118 (229)
T d1zx0a1          41 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP  118 (229)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccc
Confidence            44455555445667899999999999999999854 589999999999999999887654  457777777655   456


Q ss_pred             CCceeEEEe-----CCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFD-----YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~-----~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .++||.|+.     ...++|+  .+...+++++.++|||||+|++..
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccccceeecccccccccccc--cCHHHHHHHHHHHcCCCcEEEEEe
Confidence            678999984     3444554  566789999999999999987644

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.1e-16  Score=124.22  Aligned_cols=144  Identities=12%  Similarity=0.056  Sum_probs=100.1

Q ss_pred             cccchhhhhccCCCCCCCC-CCcHH----HHHHHHcCCCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHH
Q 026903           74 SSGGWEKCWEEGLTPWDIG-QPAPI----IVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAE  147 (231)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~  147 (231)
                      ...||+.+|.......... ...+.    +.+.+......+.+|||+|||+|.++...+. .+.+|+++|+|+.+++.++
T Consensus        15 ~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          15 PRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELG   94 (263)
T ss_dssp             HHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHH
Confidence            3478999997654321111 11122    2333333455678999999999988765554 4558999999999999999


Q ss_pred             HHhccCCCCC-----------------------------ceEEEEccCCCC-------CCCCceeEEEeCCcccccCh--
Q 026903          148 ELSSSLPNAK-----------------------------FVSFLKADFFTW-------CPTELFDLIFDYTFFCAIEP--  189 (231)
Q Consensus       148 ~~~~~~~~~~-----------------------------~i~~~~~d~~~~-------~~~~~fD~i~~~~~~~~~~~--  189 (231)
                      +........-                             ......+|+...       ...++||+|++.++++|+++  
T Consensus        95 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~  174 (263)
T d2g72a1          95 RWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL  174 (263)
T ss_dssp             HHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH
T ss_pred             HHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCH
Confidence            8765432110                             123455666551       22457999999999999864  


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          190 EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ++..++++++.++|||||+|++.+....
T Consensus       175 ~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         175 ASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence            4678999999999999999998776543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=2.7e-16  Score=121.90  Aligned_cols=113  Identities=14%  Similarity=0.057  Sum_probs=90.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCC
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~  182 (231)
                      .|+.+|||+|||+|..+..+++  ++..|+|+|+|+.+++.++++....   +++.++.+|...+  .....+|++++..
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~~i~~  149 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeEEeec
Confidence            3568999999999999999998  4469999999999999999987655   4688888888883  2345677766666


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  224 (231)
                      .+++.  ++...++.++.+.|||||.+++.......+..++|
T Consensus       150 ~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~  189 (230)
T d1g8sa_         150 DVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP  189 (230)
T ss_dssp             CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH
T ss_pred             cccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH
Confidence            66665  46678899999999999999998877766655554

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.5e-16  Score=125.94  Aligned_cols=168  Identities=19%  Similarity=0.233  Sum_probs=119.4

Q ss_pred             CCccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHH----HcCCCCCCc
Q 026903           46 KNREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLH----QSGALPKGR  111 (231)
Q Consensus        46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~  111 (231)
                      .+...+. +...+.+..+.+++...+.++..       -.+..||...  ..+ .+..|++..+.++    ......+.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~-~VlIPRpeTE~lv~~~l~~~~~~~~~  111 (274)
T d2b3ta1          33 RGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSP-ATLIPRPDTECLVEQALARLPEQPCR  111 (274)
T ss_dssp             CCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCT-TSCCCCTTHHHHHHHHHHHSCSSCCE
T ss_pred             cCHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEec-cccccccchhhhhhhHhhhhcccccc
Confidence            3334443 45667888888888888764433       2334444431  222 3344555544333    333445579


Q ss_pred             EEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC-
Q 026903          112 ALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE-  188 (231)
Q Consensus       112 vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~-  188 (231)
                      |||+|||+|..+..++.  +..+|+++|+|+.+++.|++|+..+++ .+++|+++|+.+..+..+||+|+|+..+..-. 
T Consensus       112 vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~~~~  190 (274)
T d2b3ta1         112 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYIDEQD  190 (274)
T ss_dssp             EEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTCCEEEEEECCCCBCTTC
T ss_pred             eeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCCceeEEEecchhhhhhh
Confidence            99999999999999987  667999999999999999999988776 46999999999977777999999986543110 


Q ss_pred             -----------h-----------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          189 -----------P-----------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       189 -----------~-----------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                                 |           ....+++....+.|+|||.|++ +++.
T Consensus       191 ~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~  239 (274)
T d2b3ta1         191 PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW  239 (274)
T ss_dssp             HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS
T ss_pred             hcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence                       0           2346788999999999999877 4433

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=3.9e-16  Score=119.78  Aligned_cols=107  Identities=22%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             HHHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCC
Q 026903           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT  172 (231)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~  172 (231)
                      +..+++... .++.+|||+|||+|+.+..+++   +..+|+++|+++++++.|++++...+. .++.++.+|..+ +...
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGG
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccccc
Confidence            445565554 4568999999999999999986   456899999999999999999877654 468899999887 4445


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++||+|++..++++++.        .+.+.|||||+|++..
T Consensus       143 ~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred             cchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence            68999999999999863        3667899999998744

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=4.2e-16  Score=118.57  Aligned_cols=104  Identities=15%  Similarity=0.107  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~  183 (231)
                      ...|||||||+|..+..+|+  ++.+++|+|+++.++..+.++....++ +|+.++++|+..   .++++++|.|++.+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence            35899999999999999998  678999999999999999998887765 479999999887   367789999998877


Q ss_pred             ccccChHH------HHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~~------~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ..|.....      ...+++.+.++|||||.|++.+
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            66643221      1579999999999999998864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=2.3e-16  Score=123.34  Aligned_cols=100  Identities=19%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      ..|+.+|||+|||+|.++..|++   +..+|+++|.++++++.|++++.......++++..+|+.+..++..||.|++. 
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld-  161 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD-  161 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC-
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec-
Confidence            44668999999999999999987   45699999999999999999998876667899999999998778899999853 


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                          ++.  ...+++.+.++|||||+|++.
T Consensus       162 ----~p~--p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         162 ----IPD--PWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             ----CSC--GGGSHHHHHHTEEEEEEEEEE
T ss_pred             ----CCc--hHHHHHHHHHhcCCCceEEEE
Confidence                221  135789999999999999764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-16  Score=124.71  Aligned_cols=106  Identities=20%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             CcEEEecCCCchHHHHhcC------C--CCeEEEEeCChHHHHHHHHHhccCCCCCceEE--EEccCC-------CCCCC
Q 026903          110 GRALVPGCGTGYDVVAMAS------P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFF-------TWCPT  172 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~--~~~d~~-------~~~~~  172 (231)
                      .+|||||||+|.++..+++      .  +..++|+|+|+.+++.++++........++.+  ...++.       ...+.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            4899999999999887764      2  23789999999999999998866543344444  444332       23456


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ++||+|++..+++|+++  ..++++.+.++|+|||.|++..+.+.
T Consensus       122 ~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             CCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             CceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            79999999999999953  46899999999999999998887553

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.2e-16  Score=118.44  Aligned_cols=99  Identities=19%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCC----CCceEEEEccCCC-CCCCCceeEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFT-WCPTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~-~~~~~~fD~i  178 (231)
                      .++.+|||+|||+|+.+..|++   +..+|+++|+++++++.|++++...+.    ..++.+..+|... +....+||+|
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I  154 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  154 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence            4668999999999999988876   456999999999999999998765432    2468999999888 4445689999


Q ss_pred             EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++..++++++.        .+.+.|||||+|++..
T Consensus       155 ~~~~~~~~ip~--------~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         155 HVGAAAPVVPQ--------ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             hhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence            99999988863        3678999999998754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.62  E-value=1.1e-15  Score=117.73  Aligned_cols=103  Identities=19%  Similarity=0.176  Sum_probs=85.5

Q ss_pred             HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCcee
Q 026903           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (231)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD  176 (231)
                      ..+++.. ..++.+|||||||+|+.+..|++.+.+|+++|+++++++.|+++....   .++.++.+|... +...++||
T Consensus        60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHH
Confidence            3445544 345689999999999999999998889999999999999999987654   479999999887 44456899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      .|++..+..+++.        .+.+.|+|||+|++.
T Consensus       137 ~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTLLC--------KPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             HHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence            9999999888863        366889999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.61  E-value=7.7e-16  Score=117.64  Aligned_cols=105  Identities=23%  Similarity=0.177  Sum_probs=82.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCC---CceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT---ELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~---~~fD~i~~  180 (231)
                      .|+.+|||+|||+|..+..+++  ...+|+|+|+|+.+++.++++....   +++.++..|...+ ...   ..+|+|++
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEEEEEe
Confidence            4568999999999999999987  3358999999999999999988765   3799999998883 222   34666553


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                        .+.|.  .+...+++++.++|||||++++..+....
T Consensus       132 --~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  165 (209)
T d1nt2a_         132 --DIAQK--NQIEILKANAEFFLKEKGEVVIMVKARSI  165 (209)
T ss_dssp             --CCCST--THHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             --cccCh--hhHHHHHHHHHHHhccCCeEEEEEEcccc
Confidence              33333  45678899999999999999998775543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.60  E-value=5.2e-15  Score=112.41  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~  183 (231)
                      ...|||||||+|.++..+|+  +...++|+|+++.++..|.++....++ .|+.++.+|+.+   .++..++|.|++.+.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence            35899999999999999998  677999999999999999888776654 479999999887   356779999997665


Q ss_pred             ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -.+.-..      ....+++.+.++|||||.|++.+
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            5443221      12679999999999999998865

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.7e-15  Score=122.35  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~  184 (231)
                      .++++|||+|||+|.+++.+++.|+ +|+++|.++ +++.|++....++..++++++.+++.+. .+..+||+|++....
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            4678999999999999999999886 899999987 5678888888877788999999999994 466799999998777


Q ss_pred             cccCh-HHHHHHHHHHHhhcCCCcEEE
Q 026903          185 CAIEP-EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~~~~~-~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +++.. .....++....++|||||.++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            66543 456778888899999999885

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.2e-15  Score=121.30  Aligned_cols=103  Identities=22%  Similarity=0.236  Sum_probs=86.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~  184 (231)
                      .++++|||+|||+|.++..+++.|+ +|+++|.++. ...++++...++..+++.++++|+.+. .+.++||+|++....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            3568999999999999999999885 8999999986 466677777777778899999999994 456799999998777


Q ss_pred             cccCh-HHHHHHHHHHHhhcCCCcEEE
Q 026903          185 CAIEP-EMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~~~~~-~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +++.. .....++..+.++|+|||.++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            66543 356789999999999999886

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=3e-14  Score=109.81  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=88.0

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEE
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF  179 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~  179 (231)
                      .|+.+|||+|||+|.++..+++   +..+|+++|+++.+++.++++....+   ++..+..|...+    .....+|+|+
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccceEEEE
Confidence            3568999999999999999997   55699999999999999999886653   677888887762    2335789888


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  224 (231)
                      +.  +.+.  ++...+++++.+.|||||.++++.+....+...+|
T Consensus       149 ~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~  189 (227)
T d1g8aa_         149 ED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP  189 (227)
T ss_dssp             EC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH
T ss_pred             EE--cccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH
Confidence            53  3333  45677899999999999999998887765554444

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.2e-15  Score=118.30  Aligned_cols=103  Identities=20%  Similarity=0.221  Sum_probs=84.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~  184 (231)
                      .++++|||+|||+|.+++.+++.|+ +|+++|.++.+.. +++....++..+++.++++|+.+. .+..+||+|++....
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            4678999999999999999999886 8999999998765 455555556667899999999994 456799999998777


Q ss_pred             cccChH-HHHHHHHHHHhhcCCCcEEE
Q 026903          185 CAIEPE-MRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       185 ~~~~~~-~~~~~l~~~~~~L~pgG~l~  210 (231)
                      +++..+ ....++....+.|+|||+++
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEe
Confidence            766543 55677888889999999886

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2e-15  Score=119.23  Aligned_cols=109  Identities=17%  Similarity=0.100  Sum_probs=89.2

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...++... ..|+.+|||+|||+|..+..|++   ++.+|+++|+++++++.|++++...++.+++.+...|+.......
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~  171 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  171 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence            33444444 44679999999999999999987   456999999999999999999998887788999999987777677


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .||.|+.     ++++  ...+++.+.++|||||+|++..
T Consensus       172 ~~D~V~~-----d~p~--p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         172 DVDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             SEEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeEe-----cCCC--HHHHHHHHHhhcCCCCEEEEEe
Confidence            8999873     3432  2467999999999999998754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4e-15  Score=117.01  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=86.6

Q ss_pred             HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccC--CCCCceEEEEccCCC-CC
Q 026903           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~-~~  170 (231)
                      ...++... ..|+.+|||+|||+|..+..|++   +..+|+++|+++++++.|++++...  ...+++.+.++|+.+ .+
T Consensus        85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~  164 (264)
T d1i9ga_          85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  164 (264)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence            44444444 45679999999999999999997   5569999999999999999987653  234689999999988 56


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +++.||.|++     +++++  ..++..+.++|||||.+++..
T Consensus       165 ~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         165 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEe
Confidence            6789999985     34322  357899999999999987644

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.53  E-value=1.9e-14  Score=104.38  Aligned_cols=104  Identities=19%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~  183 (231)
                      ..+.+|||+|||+|.++..++.+|+ +|+++|.++.+++.+++++...+..++++++++|+...  ...++||+|++...
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            4678999999999999999988886 99999999999999999999888888899999998883  34568999997544


Q ss_pred             ccccChHHHHHHHHHHH--hhcCCCcEEEEEE
Q 026903          184 FCAIEPEMRAAWAQKIK--DFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~  213 (231)
                      +..   ......+..+.  +.|+|||.+++.+
T Consensus        93 y~~---~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          93 YAK---ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hcc---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            321   34455666665  4699999987643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=1.3e-14  Score=114.18  Aligned_cols=106  Identities=14%  Similarity=-0.035  Sum_probs=89.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      ..++.+|||+|||+|.+++.+++.| .+|+++|+++.+++.+++++..+++.++++++++|..+....+.||.|++....
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~  184 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  184 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence            4567899999999999999999866 499999999999999999999998888999999999998777899999864322


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                            ....++..+.+.|++||+|.+.++...
T Consensus       185 ------~~~~~l~~a~~~l~~gG~lh~~~~~~~  211 (260)
T d2frna1         185 ------RTHEFIPKALSIAKDGAIIHYHNTVPE  211 (260)
T ss_dssp             ------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             ------chHHHHHHHHhhcCCCCEEEEEecccc
Confidence                  113467888899999999988776544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=2.6e-14  Score=116.10  Aligned_cols=119  Identities=18%  Similarity=0.041  Sum_probs=94.2

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CC
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CP  171 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~  171 (231)
                      ...++.....++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++++..+++.++++|+++|+++.     ..
T Consensus       135 ~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~  214 (324)
T d2as0a2         135 NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK  214 (324)
T ss_dssp             HHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc
Confidence            3444454455678999999999999999998776 89999999999999999999998888899999998872     23


Q ss_pred             CCceeEEEeCCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          172 TELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..+||+|++.........       .....++..+.++|+|||+|++++-+.
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            568999998644322211       234568888899999999998876443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.52  E-value=3e-14  Score=108.82  Aligned_cols=110  Identities=20%  Similarity=0.182  Sum_probs=89.2

Q ss_pred             cHHH-HHHHHcC-CCCCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CC
Q 026903           95 APII-VHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (231)
Q Consensus        95 ~~~~-~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~  170 (231)
                      .|.+ ..+++.. ..++.+|||||||+|+.+..+++. +.+|+++|.++.+++.|++++...+. +++.++++|..+ ..
T Consensus        63 ~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          63 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFP  141 (215)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG
T ss_pred             hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCc
Confidence            4544 4455544 445689999999999999999874 66899999999999999999987764 479999999998 44


Q ss_pred             CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ...+||.|++.....+++.        .+.+.|+|||+|++.-
T Consensus       142 ~~~pfD~Iiv~~a~~~ip~--------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             ccCcceeEEeecccccCCH--------HHHHhcCCCCEEEEEE
Confidence            5678999999999888863        3667899999998743

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.50  E-value=3.1e-14  Score=107.33  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=81.1

Q ss_pred             CCCcEEEecCCCchHHHHhcC--------C--CCeEEEEeCChHHHHHHHHHhccC------------------C-----
Q 026903          108 PKGRALVPGCGTGYDVVAMAS--------P--ERYVVGLEISDIAIKKAEELSSSL------------------P-----  154 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~--------~--~~~v~~iD~s~~~i~~a~~~~~~~------------------~-----  154 (231)
                      ++.+||++|||+|.-...++-        .  ..+++|+|+++.+++.|++.....                  .     
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            346999999999986555431        1  237999999999999997532111                  0     


Q ss_pred             -------CCCceEEEEccCCCC--CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          155 -------NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       155 -------~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                             ....+.+...+....  .+.+.||+|+|.+++.+++++.+.++++.+.++|+|||+|++ ..+.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l-G~sE  173 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA-GHSE  173 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE-CTTC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE-ecCc
Confidence                   011356666766662  345789999999999999999999999999999999998754 5544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.50  E-value=1.4e-13  Score=107.26  Aligned_cols=111  Identities=15%  Similarity=0.231  Sum_probs=89.8

Q ss_pred             HHHHHcCC-CCC-CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903           99 VHLHQSGA-LPK-GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (231)
Q Consensus        99 ~~~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  174 (231)
                      ..+++... .++ .+|||||||+|.++..+++  ++.+++.+|+ |+.++       .....++++++.+|+++..|  .
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~~p--~  139 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFASVP--Q  139 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTCCC--C
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccccc--c
Confidence            33444333 333 7999999999999999988  7779999998 44443       22334689999999998765  3


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      .|++++..++|++++++..++|+++++.|+|||+|++.++..+++
T Consensus       140 ~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~  184 (244)
T d1fp1d2         140 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEE  184 (244)
T ss_dssp             EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSS
T ss_pred             ceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCC
Confidence            599999999999999999999999999999999999999865443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.5e-14  Score=114.90  Aligned_cols=116  Identities=16%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccC-------C-CCCceEEEE
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSL-------P-NAKFVSFLK  163 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~-------~-~~~~i~~~~  163 (231)
                      ...+..+++...+ ++.+|||+|||+|..+..+++ .+ .+++|+|+++.+++.|+++....       + ...+++|++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            4556777777655 458999999999999999886 34 48999999999999998765431       1 124699999


Q ss_pred             ccCCCC-CCCC--ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          164 ADFFTW-CPTE--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       164 ~d~~~~-~~~~--~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|+.+. ..+.  .+|+|+++... |.  ++....|.++.+.|||||++++..
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~~-f~--~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCTT-TC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CcccccccccccCcceEEEEccee-cc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence            999883 2222  35788875543 33  466788999999999999997643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=3.2e-14  Score=105.21  Aligned_cols=113  Identities=18%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             HHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeE
Q 026903          101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDL  177 (231)
Q Consensus       101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~  177 (231)
                      ++......+.+|||+|||+|.++..++.+|.+++++|.++++++.+++++...+...++....+|...   .....+||+
T Consensus        34 ~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          34 YLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             HHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             HhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccce
Confidence            33333445689999999999999999999999999999999999999999887776666555555432   234468999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |++...+..-..+....++.  ...|+|||++++ +++.
T Consensus       114 If~DPPY~~~~~~~l~~l~~--~~ll~~~g~ivi-e~~~  149 (171)
T d1ws6a1         114 AFMAPPYAMDLAALFGELLA--SGLVEAGGLYVL-QHPK  149 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHH--HTCEEEEEEEEE-EEET
T ss_pred             eEEccccccCHHHHHHHHHH--cCCcCCCeEEEE-EecC
Confidence            99876544311122222322  257999998765 4443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.7e-14  Score=112.20  Aligned_cols=108  Identities=15%  Similarity=0.084  Sum_probs=80.8

Q ss_pred             HHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccC----------CCCCceEEEEc
Q 026903           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL----------PNAKFVSFLKA  164 (231)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~----------~~~~~i~~~~~  164 (231)
                      ..++... ..|+.+|||+|||+|.++..|++   +..+|+++|+++++++.|++++...          ...+++++..+
T Consensus        88 ~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~  167 (324)
T d2b25a1          88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  167 (324)
T ss_dssp             HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence            3334333 45679999999999999999997   5569999999999999999987642          23468999999


Q ss_pred             cCCCCC---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          165 DFFTWC---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       165 d~~~~~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |+.+..   +...||.|+..     ++.+  ..++..+.++|||||+|++..
T Consensus       168 di~~~~~~~~~~~fD~V~LD-----~p~P--~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         168 DISGATEDIKSLTFDAVALD-----MLNP--HVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             CTTCCC-------EEEEEEC-----SSST--TTTHHHHGGGEEEEEEEEEEE
T ss_pred             chhhcccccCCCCcceEeec-----CcCH--HHHHHHHHHhccCCCEEEEEe
Confidence            998742   45689999852     2211  246899999999999987643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=9.5e-14  Score=106.71  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=83.4

Q ss_pred             HHHHHcC---CCCCCcEEEecCCCchHHHHhcC----C----CCeEEEEeCChHHHHHHHHHhccCCC----CCceEEEE
Q 026903           99 VHLHQSG---ALPKGRALVPGCGTGYDVVAMAS----P----ERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLK  163 (231)
Q Consensus        99 ~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~----~----~~~v~~iD~s~~~i~~a~~~~~~~~~----~~~i~~~~  163 (231)
                      ..+++..   ..++.+|||||||+|+.+..+++    .    +.+|+++|.++++++.|+++......    ..++.++.
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            4444433   34668999999999999988876    2    24899999999999999887543211    13699999


Q ss_pred             ccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          164 ADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       164 ~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|..+ ..+..+||.|++.....+++.        .+.+.|||||+|++...
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred             cccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEEe
Confidence            99988 445568999999999888863        36789999999987543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=5.7e-14  Score=113.75  Aligned_cols=109  Identities=25%  Similarity=0.111  Sum_probs=87.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEeC
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~~  181 (231)
                      .++++|||++||+|.++..++..+.+|+++|+|+.+++.+++++..+++. +++++++|..+.     ...++||+|++.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            45789999999999999999876679999999999999999999988764 699999998873     234689999986


Q ss_pred             CcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ........       .....++..+.++|+|||.|++.+-+.
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            43222111       234678889999999999998876543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=5.8e-13  Score=104.84  Aligned_cols=160  Identities=13%  Similarity=0.102  Sum_probs=108.2

Q ss_pred             cCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC-----CCCCCcEEEecCCCc
Q 026903           55 NVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG-----ALPKGRALVPGCGTG  120 (231)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~vLDiGcG~G  120 (231)
                      ....+..+..++..++.++..       -.+..||...  ..+ ....|++..+.+++..     ..+..+|+|+|||+|
T Consensus        44 ~~~l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~-~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG  122 (271)
T d1nv8a_          44 DLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEE-GVFVPRPETEELVELALELIRKYGIKTVADIGTGSG  122 (271)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCT-TSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEec-CccCchhhhhhhhhhhhhhhccccccEEEEeeeeee
Confidence            456788888888888764433       2334444432  222 3345565554444422     123468999999999


Q ss_pred             hHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcccc----cC-----
Q 026903          121 YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCA----IE-----  188 (231)
Q Consensus       121 ~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~~----~~-----  188 (231)
                      ..+..+++ +..+|+++|+|+++++.|++|+..++..+++.+..+|+.++.+  .+.||+|+++..+.-    ++     
T Consensus       123 ~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~  202 (271)
T d1nv8a_         123 AIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLF  202 (271)
T ss_dssp             HHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCC
T ss_pred             hhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeee
Confidence            99888877 6679999999999999999999999888889999999998543  368999999854321    11     


Q ss_pred             -hHH--------HHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          189 -PEM--------RAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       189 -~~~--------~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                       |..        ..-+-+-+.+.|+|||.+++ +.+.
T Consensus       203 EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~-Eig~  238 (271)
T d1nv8a_         203 EPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGE  238 (271)
T ss_dssp             SCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCT
T ss_pred             ccccccccccchHHHHHHHHHHhcCCCCEEEE-EECH
Confidence             100        01122224678999998755 4444

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.41  E-value=3.8e-13  Score=108.59  Aligned_cols=111  Identities=12%  Similarity=-0.024  Sum_probs=89.0

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~i  178 (231)
                      ..++.+|||++||+|.+++.++..|. .|+++|+|+.+++.+++++..+++. .+++|+++|+++..     ...+||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            45678999999999999999888776 8999999999999999999888764 57999999998732     34589999


Q ss_pred             EeCCcccc-----cC--hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCA-----IE--PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~-----~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++...-..     ..  ..+..++++.+.++|+|||+|++++.++
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            97533110     00  0345678999999999999999877654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.38  E-value=1.4e-12  Score=101.48  Aligned_cols=100  Identities=16%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      .+|||||||+|.++..+++  ++.+++..|. ++.++.       .+..++++++.+|+++..+  .+|++++..++|++
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~~~p--~aD~~~l~~vLHdw  151 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFTSIP--NADAVLLKYILHNW  151 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTTCCC--CCSEEEEESCGGGS
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------CcccCceEEEecCcccCCC--CCcEEEEEeecccC
Confidence            6899999999999999988  6779999998 444432       2345789999999998654  57999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCC---cEEEEEEccCCCC
Q 026903          188 EPEMRAAWAQKIKDFLKPD---GELITLMFPISDH  219 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pg---G~l~~~~~~~~~~  219 (231)
                      ++++..++|+++++.|+||   |++++.+...++.
T Consensus       152 ~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~  186 (244)
T d1fp2a2         152 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKK  186 (244)
T ss_dssp             CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTT
T ss_pred             ChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCC
Confidence            9999999999999999999   7888888765543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=99.10  Aligned_cols=108  Identities=19%  Similarity=0.178  Sum_probs=88.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-------CCCCcee
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~fD  176 (231)
                      ..+++|||+|||+|+-+..+++   .+.+++.+|.+++..+.|++++...+..++++++.+|..+.       ...++||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            4468999999999999999987   46799999999999999999999888888999999998772       2346899


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (231)
                      +|+...-     .+....++..+.++|+|||++++-..--.+.
T Consensus       138 ~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~  175 (219)
T d2avda1         138 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLWRGK  175 (219)
T ss_dssp             EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSGGGG
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            9996432     2344667888999999999998866544443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.36  E-value=8.4e-13  Score=105.51  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=85.9

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCC-----CCCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC-----PTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~-----~~~~fD~i~~  180 (231)
                      .++.+|||++||+|.+++.++..|++|+++|.|+.+++.|++|+..+++.+ +++|+++|+++..     ....||+|++
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            346799999999999999999999999999999999999999998776654 6999999998843     3468999998


Q ss_pred             CCc-ccccC-------hHHHHHHHHHHHhhcCCCcEEEE-EEccC
Q 026903          181 YTF-FCAIE-------PEMRAAWAQKIKDFLKPDGELIT-LMFPI  216 (231)
Q Consensus       181 ~~~-~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~-~~~~~  216 (231)
                      ... +..-+       ..+...+++.+.++|+|||.+++ .+++.
T Consensus       211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~  255 (309)
T d2igta1         211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI  255 (309)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence            533 21100       13456677888999999997544 44443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=2.2e-12  Score=106.89  Aligned_cols=116  Identities=24%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC--------CCCceEE-E
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--------NAKFVSF-L  162 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~--------~~~~i~~-~  162 (231)
                      .+.+.+++++..+ ++.+|||+|||.|..+..++.  .+.+++|||+++.+++.|+++.....        ....+.+ .
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            4567888888754 558999999999999999987  34589999999999999998765321        0112333 3


Q ss_pred             EccCCCCC----CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          163 KADFFTWC----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       163 ~~d~~~~~----~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .++.....    .-..+|+|+++.. .|.  ++....|.++.+.|||||++++..
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~-~f~--~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNF-LFD--EDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCT-TCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eechhhccccccccccceEEEEecc-cCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence            34444311    1135788887643 333  567889999999999999987753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=6.4e-12  Score=94.05  Aligned_cols=109  Identities=21%  Similarity=0.259  Sum_probs=87.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC------CCCCCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------~~~~~~fD~  177 (231)
                      ..++..+||++||+|..+..+++  ++.+|+|+|.++++++.|++++..++  +++.++++++.+      ....++||.
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~~~~vdg   98 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDG   98 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcCCCCcce
Confidence            45678999999999999999987  56799999999999999999987754  579999999877      223468999


Q ss_pred             EEeCCccc--cc-----ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          178 IFDYTFFC--AI-----EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       178 i~~~~~~~--~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+....+.  .+     ........|....++|+|||.++++.|..
T Consensus        99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            98653331  11     11455788999999999999999988854

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=4.2e-12  Score=95.25  Aligned_cols=74  Identities=20%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             cCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903          104 SGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (231)
Q Consensus       104 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~  182 (231)
                      ...+.+++|||+|||+|.++..++..|. +|+++|+++.+++.|+++..      ++.|+++|+.+..  +.||+|+++.
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~--~~fD~Vi~NP  115 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNP  115 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECC
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcC--CcceEEEeCc
Confidence            3467789999999999999998888775 79999999999999999873      5789999998753  6799999986


Q ss_pred             ccc
Q 026903          183 FFC  185 (231)
Q Consensus       183 ~~~  185 (231)
                      .+.
T Consensus       116 Pfg  118 (197)
T d1ne2a_         116 PFG  118 (197)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            653

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.32  E-value=2.1e-12  Score=96.12  Aligned_cols=105  Identities=16%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIF  179 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~  179 (231)
                      ...+.+|||++||+|.+++.++.+|+ +|+++|.++++++.+++++...+..++++++++|+....     ....||+|+
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence            34678999999999999999999988 799999999999999999887766678999999988732     345899999


Q ss_pred             eCCcccccChHHHHHHHHHHHh--hcCCCcEEEEEE
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~  213 (231)
                      +...+..   ......+..+.+  .|+++|++++.+
T Consensus       119 lDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         119 LDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             ECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            7665432   223456666654  699999876543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=3.7e-12  Score=97.18  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD  176 (231)
                      .++++|||+|||+|+.+..+++   .+.+++++|.+++.++.|++++...++.++|+++.+|..+..       ....||
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            3457999999999999999987   467999999999999999999988888889999999988732       235799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +|+....-..   ......+.+..++|+|||++++-
T Consensus       135 ~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         135 MVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             EEEECSCGGG---HHHHHHHHHHTTCEEEEEEEEES
T ss_pred             eeeecccccc---cccHHHHHHHhCccCCCcEEEEe
Confidence            9996533221   12223466677899999987663

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.29  E-value=9.6e-12  Score=96.74  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=83.2

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      .+|||||||+|.++..+++  ++.+++++|+.+. +       ......+++.+..+|+++..|.  .|+++...++|+.
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~P~--ad~~~l~~vlh~~  152 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSIPK--ADAVFMKWICHDW  152 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCCCC--CSCEECSSSSTTS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccccccCCC--cceEEEEEEeecC
Confidence            6899999999999999998  7789999999553 2       2222346899999999987664  5778889999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (231)
                      ++++...+|++++++|+|||.+++.+.....
T Consensus       153 ~d~~~~~iL~~~~~al~pgg~~li~d~~~~~  183 (243)
T d1kyza2         153 SDEHCLKFLKNCYEALPDNGKVIVAECILPV  183 (243)
T ss_dssp             CHHHHHHHHHHHHHHCCSSSCEEEEECEECS
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence            9999999999999999999999998875443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=1.7e-11  Score=92.56  Aligned_cols=76  Identities=14%  Similarity=0.072  Sum_probs=65.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~  184 (231)
                      .+.+++|||+|||+|.++..++..|. +|+++|+++.+++.+++++...+  .+..++.+|..++.  +.||+|+++..+
T Consensus        44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~~~--~~fD~Vi~nPP~  119 (201)
T d1wy7a1          44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSEFN--SRVDIVIMNPPF  119 (201)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGGCC--CCCSEEEECCCC
T ss_pred             CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhhhC--CcCcEEEEcCcc
Confidence            56788999999999999999888876 89999999999999999987765  45889999987753  579999998765


Q ss_pred             c
Q 026903          185 C  185 (231)
Q Consensus       185 ~  185 (231)
                      .
T Consensus       120 ~  120 (201)
T d1wy7a1         120 G  120 (201)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=7e-12  Score=93.36  Aligned_cols=104  Identities=10%  Similarity=0.043  Sum_probs=82.4

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~  183 (231)
                      ..+.+|||++||+|.+++.++.+|+ +|+.+|.++.+++.+++++..... .++.++.+|+...  .....||+|++...
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPP  120 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP  120 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCc
Confidence            4567999999999999999999888 899999999999999999877654 4689999998873  34568999998766


Q ss_pred             ccccChHHHHHHHHHHHh--hcCCCcEEEEEEc
Q 026903          184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMF  214 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~  214 (231)
                      +..   ......+..+.+  .|+++|++++.+.
T Consensus       121 Y~~---~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         121 FRR---GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             SST---TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccc---chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            543   233455666654  6999998877543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.5e-11  Score=91.90  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCceeEEEe
Q 026903          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFDLIFD  180 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD~i~~  180 (231)
                      .++||+|||+|-.+..++.  ++.+++|+|+++++++.|++++..+++.+++.+++.+.....       ..+.||+|+|
T Consensus        63 ~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivs  142 (250)
T d2h00a1          63 RRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMC  142 (250)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred             ceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEe
Confidence            6999999999999999887  678999999999999999999999988899999887665521       2457999999


Q ss_pred             CCcccc
Q 026903          181 YTFFCA  186 (231)
Q Consensus       181 ~~~~~~  186 (231)
                      +..++.
T Consensus       143 NPPY~~  148 (250)
T d2h00a1         143 NPPFFA  148 (250)
T ss_dssp             CCCCC-
T ss_pred             cCcccc
Confidence            987763

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.22  E-value=8.4e-12  Score=95.79  Aligned_cols=103  Identities=14%  Similarity=0.146  Sum_probs=85.5

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--------CCCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~f  175 (231)
                      ..+++|||+|+++|+-+..+++   .+.+++.+|.+++..+.|++++...+..++++++.++..+..        ..++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            3458999999999999999986   467999999999999999999998888889999999998732        13579


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+||.-.--     .....+++.+.++|+|||++++-..
T Consensus       138 D~iFiDa~k-----~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         138 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             eEEEeccch-----hhhHHHHHHHHhhcCCCcEEEEccC
Confidence            999964322     3446788899999999999877544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.05  E-value=6.5e-10  Score=82.43  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCC----CCCCceeEEEe
Q 026903          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTW----CPTELFDLIFD  180 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~----~~~~~fD~i~~  180 (231)
                      ..+.+|||+.||+|.+++..+++|+ +|+.+|.+..+++..+++++..+... ...+...|..+.    .....||+|++
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            3567999999999999999999998 99999999999999999988776543 466777765552    22347999997


Q ss_pred             CCcccccChHHHHHHHHHHHh--hcCCCcEEEEEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~  213 (231)
                      ...+..   ......+..+..  .|+++|.+++..
T Consensus       122 DPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         122 DPPFHF---NLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             chhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            666543   234566676654  699999876643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.03  E-value=5.8e-10  Score=87.94  Aligned_cols=111  Identities=19%  Similarity=0.138  Sum_probs=82.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCC---------CCCceEEEEccCCCC-CCCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSFLKADFFTW-CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~---------~~~~i~~~~~d~~~~-~~~~~  174 (231)
                      ..++.+||.+|+|.|..+..+++. ..+|+.+|+++++++.|++.+....         ..++++++.+|.... ...++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            445689999999999999998874 3489999999999999998764321         246899999998873 23468


Q ss_pred             eeEEEeCCcccccChHH--HHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          175 FDLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ||+|++-..-..-++..  ...+++.+.+.|+|||++++..-++
T Consensus       150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~  193 (276)
T d1mjfa_         150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV  193 (276)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence            99999754322111111  1578999999999999988755433

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.5e-09  Score=81.74  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=84.4

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~  183 (231)
                      ..++.+|+|+|+|.|.-+..++-  +..+++.+|.+.+-+.+.++.....++ +++++++..+++......||+|+++.+
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fD~V~sRA~  141 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhccccccceehhhhh
Confidence            44568999999999988887774  778999999999999999988777765 379999999999777778999998877


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -.      ...++..+...++++|.+++.-
T Consensus       142 ~~------~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         142 AS------LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             SS------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             cC------HHHHHHHHHHhcCCCcEEEEEC
Confidence            32      2467888999999999987753

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=9.3e-10  Score=88.95  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC-------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEe
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD  180 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~  180 (231)
                      ++.+|||++||+|.++..+..       ...+++|+|+++.++..|+.+.....  ....+..+|.....+...||+|++
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--QKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--CCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--hhhhhhcccccccccccccccccc
Confidence            447999999999999988753       22379999999999999988776543  346788888888767789999999


Q ss_pred             CCcccccChH----------------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          181 YTFFCAIEPE----------------MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       181 ~~~~~~~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +..+......                ....++..+.+.|+|||+++++.
T Consensus       195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~  243 (328)
T d2f8la1         195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  243 (328)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence            9776432211                12357999999999999987654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=1.2e-09  Score=87.43  Aligned_cols=108  Identities=14%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccC----CCCCceEEEEccCCCCC--CCCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL----PNAKFVSFLKADFFTWC--PTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~----~~~~~i~~~~~d~~~~~--~~~~fD~  177 (231)
                      ...+++||.+|+|.|..+..+++  ...+|+.+|+++++++.|++.+...    ...++++++.+|..+..  .+.+||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            34458999999999999999987  3459999999999999999876321    12368999999999942  3468999


Q ss_pred             EEeCCccccc---ChH--HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          178 IFDYTFFCAI---EPE--MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       178 i~~~~~~~~~---~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      |++-..-.+.   ++.  .-..+++.+.+.|+|||++++..
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            9964321111   111  11578999999999999987643

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.93  E-value=2.3e-09  Score=82.43  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CC
Q 026903           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~  172 (231)
                      ...+..+++... .++.+|||||||+|.++..|++.+.+|+++|+++.+++.++++....   ++++++++|+.+.. +.
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc
Confidence            455677777664 35689999999999999999998899999999999999999887654   47999999999943 33


Q ss_pred             CceeEEEeCCcccccCh
Q 026903          173 ELFDLIFDYTFFCAIEP  189 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~  189 (231)
                      .....|++ +..++++.
T Consensus        84 ~~~~~vv~-NLPYnIss   99 (235)
T d1qama_          84 NQSYKIFG-NIPYNIST   99 (235)
T ss_dssp             SCCCEEEE-ECCGGGHH
T ss_pred             cccceeee-eehhhhhH
Confidence            33334444 33344543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=2e-09  Score=85.25  Aligned_cols=108  Identities=16%  Similarity=0.122  Sum_probs=79.9

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~i  178 (231)
                      ...+++||-+|+|.|..+..+++ . ..+|+.+|+++++++.|++.+....   .+++++++.+|..+..  ...+||+|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            34458999999999999999998 3 4589999999999999998654321   2468999999998843  34589999


Q ss_pred             EeCCcccccCh-H--HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEP-E--MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~-~--~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++-..-....+ .  .-..+++.+.+.|+|||++++..
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            97533221111 1  12578999999999999987654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.87  E-value=7.5e-09  Score=81.89  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhcc---CCCCCceEEEEccCCCCC---CCCceeE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTWC---PTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~~~~~---~~~~fD~  177 (231)
                      ...+++||-+|.|.|..+..+++. . .+++.+|+++++++.+++.+..   ....++++++.+|.....   .+++||+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            344589999999999999999983 3 4899999999999999986532   112468999999988832   3458999


Q ss_pred             EEeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+.-..-..-++.  .-..+++.+++.|+|||++++..-+
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9974332111111  1257899999999999998875433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.6e-09  Score=81.60  Aligned_cols=111  Identities=20%  Similarity=0.161  Sum_probs=81.6

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhcc---CCCCCceEEEEccCCCCC--CCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTWC--PTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~~~~~--~~~~fD~i  178 (231)
                      ...+++||-+|.|.|..+..+++.  ..+++.+|+++++++.|++.+..   ....++++++.+|.....  ..++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            344589999999999999999983  45999999999999999987632   112468999999988832  34689999


Q ss_pred             EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ++-..-..-++.  .-..+++.+++.|+|||++++..-++
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence            975332111111  12468999999999999998765444

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.84  E-value=4.9e-09  Score=83.39  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~i  178 (231)
                      ...+++||-+|.|.|..+..+++. . .+|+.+|+++++++.+++.+....   ..++++++.+|..+..  ...+||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            344589999999999999999983 3 599999999999999999765422   2368999999998833  34689999


Q ss_pred             EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      ++-..-..-++.  .-..+++.+.+.|+|||++++-.
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            975432221111  22678999999999999987753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=8.7e-09  Score=80.89  Aligned_cols=108  Identities=18%  Similarity=0.157  Sum_probs=81.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhcc---CCCCCceEEEEccCCCC--CCCCceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTW--CPTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~~~~--~~~~~fD~i  178 (231)
                      ..++++||-+|.|.|..+..+++ ++ .+++.+|+++++++.|++.+..   ...+++++++.+|....  ....+||+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            34558999999999999999998 33 5999999999999999997632   11346899999999883  235689999


Q ss_pred             EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEE
Q 026903          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +.-..-..-++.  .-..+++.+.+.|+|||+++...
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            975332111110  12468999999999999887644

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.3e-08  Score=82.94  Aligned_cols=100  Identities=20%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----CCceeEEEeCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFDYT  182 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~fD~i~~~~  182 (231)
                      ++.+|||+-||.|.+++.|++.+.+|+|+|.++.+++.|+++...++.. ++.|+.++..+...     ...+|+|+...
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~~~~~~~~~~d~vilDP  290 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDP  290 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhhhhhhhhccCceEEeCC
Confidence            4579999999999999999999999999999999999999998887654 79999999888432     35699998432


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .=.-+     .+.++.+.+. +|.-++||++-
T Consensus       291 PR~G~-----~~~~~~l~~~-~~~~ivYVSCn  316 (358)
T d1uwva2         291 ARAGA-----AGVMQQIIKL-EPIRIVYVSCN  316 (358)
T ss_dssp             CTTCC-----HHHHHHHHHH-CCSEEEEEESC
T ss_pred             CCccH-----HHHHHHHHHc-CCCEEEEEeCC
Confidence            22111     2345555553 77778888764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.80  E-value=4.4e-09  Score=79.90  Aligned_cols=110  Identities=27%  Similarity=0.463  Sum_probs=78.6

Q ss_pred             CcHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC
Q 026903           94 PAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (231)
Q Consensus        94 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~  169 (231)
                      |....+.++.... .++.+|||+|||+|.++..+.+   ....++|+|+++..+..          ..+..++.+|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcc
Confidence            3445455555443 3457999999999999888865   44589999999865332          23467888888887


Q ss_pred             CCCCceeEEEeCCcccccC----------h-----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          170 CPTELFDLIFDYTFFCAIE----------P-----------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       170 ~~~~~fD~i~~~~~~~~~~----------~-----------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .....||+|+++..+....          .                 .....++....+.|+|||++.++.
T Consensus        74 ~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~  144 (223)
T d2ih2a1          74 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  144 (223)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence            7778999999986653311          0                 012467888999999999987765

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.75  E-value=7.9e-10  Score=85.54  Aligned_cols=98  Identities=12%  Similarity=0.136  Sum_probs=73.5

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT  172 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~  172 (231)
                      ...+..+++.... ++.+|||||||+|.++..|++.+.+|+++|+++.+++.++++....   ++++++++|+.+. .+.
T Consensus        15 ~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~~~   91 (245)
T d1yuba_          15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTCCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccccc
Confidence            4456677776543 5579999999999999999998899999999999988887665433   5799999999994 344


Q ss_pred             CceeEEEeCCcccccChHHHHHHH
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWA  196 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l  196 (231)
                      ..++.|+++.. +|++.+...+++
T Consensus        92 ~~~~~vv~NLP-Y~Ist~il~~~l  114 (245)
T d1yuba_          92 KQRYKIVGNIP-YHLSTQIIKKVV  114 (245)
T ss_dssp             SSEEEEEEECC-SSSCHHHHHHHH
T ss_pred             ceeeeEeeeee-hhhhHHHHHHHh
Confidence            55666665554 467655544443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=6.8e-08  Score=71.02  Aligned_cols=106  Identities=17%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCceeEEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLIF  179 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD~i~  179 (231)
                      ..+++.++|..||.|..+..+++.+.+|+|+|.++.+++.+++..     ..++.+++.+..+.      ...+.+|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~-----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH-----LPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-----ccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            456789999999999999999998889999999999999998753     24699999988772      2235799998


Q ss_pred             eCCcccc--cCh-----HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          180 DYTFFCA--IEP-----EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       180 ~~~~~~~--~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ....+.-  ++.     ......|......|+|||.+++..|..
T Consensus        91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            7543221  111     234567888999999999999988853

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.2e-07  Score=70.52  Aligned_cols=89  Identities=22%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      ...+..+++.... ++..|||||+|.|.++..|++.+.+|+++|+++.+++..++.+......++++++.+|+.....+.
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~   86 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   86 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence            3455666666544 568999999999999999999889999999999999999998876655578999999999864333


Q ss_pred             ceeEEEeCCcc
Q 026903          174 LFDLIFDYTFF  184 (231)
Q Consensus       174 ~fD~i~~~~~~  184 (231)
                       +..|+++..+
T Consensus        87 -~~~vV~NLPY   96 (278)
T d1zq9a1          87 -FDTCVANLPY   96 (278)
T ss_dssp             -CSEEEEECCG
T ss_pred             -hhhhhcchHH
Confidence             4566655443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=1.3e-07  Score=72.35  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=77.2

Q ss_pred             CCcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEeCC
Q 026903          109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYT  182 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~~~  182 (231)
                      ..+++|+|+|.|.-++.++  .+..+++.+|.+..-+.+.++.....++. ++.+++..+++..    ..+.||+|+++.
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEEhh
Confidence            4799999999998887776  47889999999999999988877666553 6888888777632    235899999987


Q ss_pred             cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (231)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  212 (231)
                      +-.      ...++..+...+++||.+++.
T Consensus       150 va~------l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         150 VAR------LSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             CSC------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhC------HHHHHHHHhhhcccCCEEEEE
Confidence            642      246788899999999988763

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.52  E-value=2.5e-07  Score=76.99  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=88.1

Q ss_pred             CCcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcC----C-----------CCeEEEEeCChHHHHHHHHHhccCCCC
Q 026903           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P-----------ERYVVGLEISDIAIKKAEELSSSLPNA  156 (231)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~----~-----------~~~v~~iD~s~~~i~~a~~~~~~~~~~  156 (231)
                      +|......++... ..++.+|+|.+||+|.+...+.+    .           ...++|+|+++.....|+-++.-++..
T Consensus       146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         146 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            4455555555543 33458999999999999987765    1           125999999999999999877655433


Q ss_pred             -CceEEEEccCCCCCCCCceeEEEeCCcccccCh---------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          157 -KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---------------EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       157 -~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~---------------~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       ....+...|.....+...||+|+++..+.....               ..-..++..+...|++||++.++.
T Consensus       226 ~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~  298 (425)
T d2okca1         226 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL  298 (425)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence             245678888888666778999999877643211               122468999999999999877654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.1e-06  Score=64.26  Aligned_cols=98  Identities=13%  Similarity=0.126  Sum_probs=72.7

Q ss_pred             CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------CCCCc
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~~~  174 (231)
                      .++.+|||+||+.|.++..+.+   ....++++|..+.         ..   .+++.++++|+.+.         .....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~---i~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP---IVGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC---CTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc---cCCceEeecccccchhhhhhhhhccCcc
Confidence            4568999999999999998886   3458999998662         11   24689999999872         13457


Q ss_pred             eeEEEeCCcccccCh---------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          175 FDLIFDYTFFCAIEP---------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       175 fD~i~~~~~~~~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+|++-....--..         +.....+.-+.+.|++||.+++=.|..
T Consensus        89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence            999999766443111         122466777889999999999988864

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.43  E-value=8.2e-07  Score=67.57  Aligned_cols=98  Identities=12%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             CCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCce
Q 026903          107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELF  175 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~f  175 (231)
                      .++.+|||+|++.|.-+..++.      ...+++++|+++........      ..++++++.+|..+.     .....+
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~~~~~  152 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAH  152 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHHhcCC
Confidence            3468999999999987766653      34699999998754322211      125799999998762     223467


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      |+|+.-.. |+ ....... + .+...|++||++++.+-
T Consensus       153 dlIfID~~-H~-~~~v~~~-~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         153 PLIFIDNA-HA-NTFNIMK-W-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             SEEEEESS-CS-SHHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred             CEEEEcCC-cc-hHHHHHH-H-HHhcccCcCCEEEEEcC
Confidence            88776443 32 2223222 3 35689999999988653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=1.1e-07  Score=73.57  Aligned_cols=71  Identities=8%  Similarity=-0.007  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC
Q 026903           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (231)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~  169 (231)
                      ..+..+++... .++..|||||||.|.++..|++.+.+|+++|+++.+++..++....   .++++++.+|+...
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~   79 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhh
Confidence            34455555543 3468999999999999999999999999999999999999875432   25799999999884

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.28  E-value=1.4e-06  Score=66.15  Aligned_cols=119  Identities=14%  Similarity=0.120  Sum_probs=74.0

Q ss_pred             HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (231)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  173 (231)
                      .+..+.++.. .+..+|+|+|||.|.++..++...  ..|.|+++--..-+. ......+. -+-+++...+.....+++
T Consensus        54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~-~ni~~~~~~~dv~~l~~~  131 (257)
T d2p41a1          54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYG-WNLVRLQSGVDVFFIPPE  131 (257)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTT-GGGEEEECSCCTTTSCCC
T ss_pred             HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccc-cccccchhhhhHHhcCCC
Confidence            3555555543 355799999999999999999743  477888773210000 00000111 122455555444445567


Q ss_pred             ceeEEEeCCcccccCh----HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          174 LFDLIFDYTFFCAIEP----EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .+|+|+|-..-..-.+    .--.++|+.+.+.|+|||.+++-.|.+.
T Consensus       132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py  179 (257)
T d2p41a1         132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  179 (257)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence            8999999876442222    1123677888899999999998888765

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.23  E-value=6.8e-07  Score=72.84  Aligned_cols=100  Identities=16%  Similarity=-0.017  Sum_probs=73.8

Q ss_pred             CCCcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCC--------------CceEEEEccCCCCC-
Q 026903          108 PKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNA--------------KFVSFLKADFFTWC-  170 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~--------------~~i~~~~~d~~~~~-  170 (231)
                      .+.+|||..||+|..++..+. .+ ..|+..|+|+.+++.+++|+..++..              ..+.+.+.|+.... 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            457999999999999997654 34 48999999999999999998765432              13556666655422 


Q ss_pred             -CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 -PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 -~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       ....||+|..-. +.  +   ...+|+...+.++.||.|.+..
T Consensus       125 ~~~~~fDvIDiDP-fG--s---~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC-CC--C---cHHHHHHHHHHhccCCEEEEEe
Confidence             345799998543 11  1   1458999999999999998754

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.6e-06  Score=73.83  Aligned_cols=121  Identities=15%  Similarity=0.117  Sum_probs=79.9

Q ss_pred             CCcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcC----CC----------------CeEEEEeCChHHHHHHHHHhc
Q 026903           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----PE----------------RYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~----~~----------------~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      +|...+..++... ..++.+|+|..||+|.+...+.+    ..                ..++|+|+++.+...|+-++.
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            3455554444433 33457999999999999876643    11                258999999999999988776


Q ss_pred             cCCCCCc----eEEEEccCCC--CCCCCceeEEEeCCcccccC------------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          152 SLPNAKF----VSFLKADFFT--WCPTELFDLIFDYTFFCAIE------------PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       152 ~~~~~~~----i~~~~~d~~~--~~~~~~fD~i~~~~~~~~~~------------~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      -++...+    -.+...+...  ......||+|+++..+.--.            ...--.++..+.+.|+|||++.++.
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            5543211    1234444443  22345799999987663210            0122468999999999999987764

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.13  E-value=7.1e-06  Score=65.15  Aligned_cols=108  Identities=14%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~  181 (231)
                      ..++.+|||+.||.|.=+..++.   ....+++.|.++.-+...++++.+.+. .++.+...|.... .....||.|++-
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEc
Confidence            56778999999999998877765   445899999999999999988877665 3577777776653 334679999963


Q ss_pred             C------cccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          182 T------FFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       182 ~------~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .      ++..       ...       ..+.++|....+.|||||+|+.++=
T Consensus       193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            1      2211       111       1336888999999999999887663

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.1e-05  Score=63.24  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCCCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~fD~i~~~  181 (231)
                      ..++.+|||+.+|.|.=+..++.  ....++++|.++.-+...++++.+.+.. ++.....|...  ......||.|++-
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEe
Confidence            45678999999999999888876  3358999999999999999998887754 34444444333  2334679999963


Q ss_pred             ------Ccccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 ------TFFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ------~~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                            .++..       ..+       ..+.++|....+.|||||+|+.++=+
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence                  12211       111       12368899999999999998876633

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.7e-05  Score=59.20  Aligned_cols=108  Identities=9%  Similarity=0.094  Sum_probs=76.3

Q ss_pred             CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----CceeEE
Q 026903          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~fD~i  178 (231)
                      ..++.+|||++||.|.-+..++.   ....++++|+++.-++..++++.+.+.. ++.+...|.....+.    +.||.|
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccceeeEE
Confidence            55678999999999998888775   4568999999999999999999888654 588888888774332    479999


Q ss_pred             EeCCc------cccc---------Ch-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          179 FDYTF------FCAI---------EP-------EMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       179 ~~~~~------~~~~---------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ++-..      +...         ++       ..+..++.... .|+|||.|+.++-+
T Consensus       171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS  228 (293)
T d2b9ea1         171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS  228 (293)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred             eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence            96421      1111         00       11234555555 47999988776643

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.86  E-value=1.4e-05  Score=61.07  Aligned_cols=77  Identities=16%  Similarity=0.050  Sum_probs=60.5

Q ss_pred             CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC--------CCCceEEEEccCCCCC--CCCceeEEE
Q 026903          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP--------NAKFVSFLKADFFTWC--PTELFDLIF  179 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~--------~~~~i~~~~~d~~~~~--~~~~fD~i~  179 (231)
                      .+|||.-||.|..+..++..|.+|+++|.++......++.+.+..        ...+++++++|..++.  ....||+|+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY  169 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence            489999999999999999999999999999988766665443221        1237999999988743  245799999


Q ss_pred             eCCcccc
Q 026903          180 DYTFFCA  186 (231)
Q Consensus       180 ~~~~~~~  186 (231)
                      .-..|.+
T Consensus       170 lDPMFp~  176 (250)
T d2oyra1         170 LDPMFPH  176 (250)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCcc
Confidence            8777654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.73  E-value=5.8e-06  Score=60.02  Aligned_cols=97  Identities=15%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCce
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~f  175 (231)
                      ..++.+||-+|||. |..+..+++ .|. +|+++|.+++-++.+++.-..       +++...-.+       ......+
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-------~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-------DILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-------EEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-------ccccccchhHHHHHHHHhhccCc
Confidence            44668999999997 888888887 675 799999999999999875321       233222122       1223469


Q ss_pred             eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      |+|+....-.        ..++...++++|+|.+++..+...
T Consensus        98 D~vid~~g~~--------~~~~~a~~~~~~~G~iv~~G~~~~  131 (174)
T d1jqba2          98 DRVIMAGGGS--------ETLSQAVKMVKPGGIISNINYHGS  131 (174)
T ss_dssp             EEEEECSSCT--------THHHHHHHHEEEEEEEEECCCCCS
T ss_pred             ceEEEccCCH--------HHHHHHHHHHhcCCEEEEEeecCC
Confidence            9998543321        236778899999999998776543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.71  E-value=0.00013  Score=52.12  Aligned_cols=97  Identities=16%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-C---------CCCC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W---------CPTE  173 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~---------~~~~  173 (231)
                      ..++.+||-+|||. |..+..+++ .|.+|+++|.+++-++.+++....      ..+......+ .         ....
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~------~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------VTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc------EEEeccccccccchhhhhhhccccc
Confidence            45668999999995 777777777 888999999999999999885421      2222111111 0         0134


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+|+|+....-        ...+....++++|+|++++.....
T Consensus        98 g~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          98 LPNVTIDCSGN--------EKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             CCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             CCceeeecCCC--------hHHHHHHHHHHhcCCceEEEecCC
Confidence            68999853321        235777889999999998876544

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.70  E-value=3.4e-05  Score=58.80  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=52.7

Q ss_pred             CCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026903           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      .|...++++++....++..|||..||+|..+....+.|.+.+|+|++++.++.|++++.
T Consensus       197 kP~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            44566788888777888999999999999999999999999999999999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=1.6e-05  Score=57.91  Aligned_cols=95  Identities=18%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----------CCCCC
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----------WCPTE  173 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----------~~~~~  173 (231)
                      .++.+||-+|||. |..+..+++ .|. +|+++|.+++.++.+++.-..       .++...-.+          .....
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-------LTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce-------EEEeccccchHHHHHHHHHhhCCC
Confidence            4568999999985 777778877 786 899999999999999875321       122221111          12234


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+|+|+....-        ...++...++|++||++++.....
T Consensus       100 g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G~~~  134 (182)
T d1vj0a2         100 GADFILEATGD--------SRALLEGSELLRRGGFYSVAGVAV  134 (182)
T ss_dssp             CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCCCS
T ss_pred             CceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEeecC
Confidence            69999854321        123677889999999998877644

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.66  E-value=4.1e-05  Score=60.21  Aligned_cols=63  Identities=10%  Similarity=-0.041  Sum_probs=56.4

Q ss_pred             CCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      ...|...+++++.....++..|||..||+|..+......|.+.+|+|++++.++.|++++...
T Consensus       233 t~kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         233 ARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             SCCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CcCchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            456678888898887788899999999999999999999999999999999999999987654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.53  E-value=9.6e-06  Score=59.95  Aligned_cols=104  Identities=14%  Similarity=0.044  Sum_probs=68.7

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCce
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~f  175 (231)
                      ..++.+||.+|||. |..+..+++ .|. +|+++|.++..++.|++.-..       .++...-.+       ......+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-------IADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-------EEEeCCCcCHHHHHHHHhCCCCc
Confidence            44668999999998 667777776 555 899999999999999875321       222111111       1123479


Q ss_pred             eEEEeCCccc-------ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          176 DLIFDYTFFC-------AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       176 D~i~~~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      |+++......       .+........++.+.++++|||.+.+.....
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            9999643211       1111122457899999999999998887544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.00014  Score=51.99  Aligned_cols=98  Identities=13%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             CCCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC--CCCCCceeEEEe
Q 026903          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT--WCPTELFDLIFD  180 (231)
Q Consensus       106 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~--~~~~~~fD~i~~  180 (231)
                      ..++.+||-+|+| .|..+..+++ .|.+|+++|.+++.++.+++.-..       .++.. +..+  ....+.||+++.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-------HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-------EEeeccchHHHHHhhhcccceEEE
Confidence            4567899999998 4788888876 888999999999999999875421       22322 2222  112357999886


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ...-.+-      ..+....+.|+|+|++++...+.
T Consensus        98 ~~~~~~~------~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          98 CASSLTD------IDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             CCSCSTT------CCTTTGGGGEEEEEEEEECCCCC
T ss_pred             EecCCcc------chHHHHHHHhhccceEEEecccc
Confidence            4222110      01345788999999998876544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.37  E-value=0.00011  Score=56.63  Aligned_cols=61  Identities=16%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             CCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      .|...+++++.....++..|||..||+|..+.+....|.+.+|+|++++.++.|++++...
T Consensus       192 kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4556678888877778899999999999999999999999999999999999999987643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0008  Score=47.93  Aligned_cols=96  Identities=19%  Similarity=0.086  Sum_probs=66.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------CCC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------PTE  173 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~~  173 (231)
                      ..++.+||-+|||. |..+..+++ .|. +|+++|.+++-++.|++.-..       .++..+-.++.         ...
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccccccccccccccccCCC
Confidence            44568999999987 666666666 777 899999999999999875321       22222222210         124


Q ss_pred             ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      .+|+|+....-        ...++...+++++||++++..+..
T Consensus        97 g~Dvvid~~G~--------~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          97 KPEVTIECTGA--------EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             CCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CceEEEeccCC--------chhHHHHHHHhcCCCEEEEEecCC
Confidence            68999853321        235788899999999998877654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00091  Score=47.51  Aligned_cols=96  Identities=21%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCCCCceeEEEeC
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~fD~i~~~  181 (231)
                      ..++.+||-+|||. |..+..+++ .|.+++++|.+++-.+.+++.-..       .++...-.+  ....+.+|+++..
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad-------~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-------EVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-------EEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc-------EEEECchhhHHHHhcCCCceeeee
Confidence            45668999999986 778888887 888899999999988888775421       223222111  2223579999865


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ..-..        .+....+.++++|++++.....
T Consensus       101 ~g~~~--------~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2         101 VAAPH--------NLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             CSSCC--------CHHHHHTTEEEEEEEEECCCC-
T ss_pred             eecch--------hHHHHHHHHhcCCEEEEeccCC
Confidence            33221        2567789999999998876543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.17  E-value=0.0011  Score=46.92  Aligned_cols=94  Identities=16%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------CCCceeE
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------PTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~fD~  177 (231)
                      ..++.+||-+|||. |..+..+++ .|.+|+++|.+++.++.+++.-.       -.++...-.+..      ..+.++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-------SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-------cccccccchhHHHHHHHhhcCCccc
Confidence            45668999999986 777777777 78899999999999999987532       123333222211      1233445


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++...         ...+....+.|+|+|+++++...
T Consensus        98 i~~~~~---------~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          98 LVTAVS---------NSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             EECCSC---------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred             cccccc---------chHHHHHHHHhcCCcEEEEEEec
Confidence            543222         13467788999999999886653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.08  E-value=0.00072  Score=51.26  Aligned_cols=105  Identities=15%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             CCcEEEecCCCchHHHHhcC------CC------------------------------------CeEEEEeCChHHHHHH
Q 026903          109 KGRALVPGCGTGYDVVAMAS------PE------------------------------------RYVVGLEISDIAIKKA  146 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~------~~------------------------------------~~v~~iD~s~~~i~~a  146 (231)
                      +..++|.-||+|.+.+..+.      +|                                    ..++|.|.++++++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            45899999999999876642      11                                    1357888888888888


Q ss_pred             ---HHHhccCCCCCceEEEEccCCCCC------CCCceeEEEeCCcccc-c------ChHHHHHHHHHHHhhcCCCcEEE
Q 026903          147 ---EELSSSLPNAKFVSFLKADFFTWC------PTELFDLIFDYTFFCA-I------EPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       147 ---~~~~~~~~~~~~i~~~~~d~~~~~------~~~~fD~i~~~~~~~~-~------~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                         ++++...++...|++.+.|+++..      +....++|+++..+.. +      ..+....+...+.+.+.....++
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~  210 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  210 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEE
Confidence               457777778888999999998733      2456899999876543 2      23456788888999997666666


Q ss_pred             EEE
Q 026903          211 TLM  213 (231)
Q Consensus       211 ~~~  213 (231)
                      ++.
T Consensus       211 it~  213 (249)
T d1o9ga_         211 VTD  213 (249)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=51.99  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+|++++.+++..+.+++.-.     +  .++...-.+       ......+|
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga-----~--~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA-----H--EVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----S--EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc-----c--cccccccccHHHHhhhhhccCCce
Confidence            46689999996  35778888887 88899999999988888876421     1  223221111       11345799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|+....         ...+....++|+|+|+++.+.
T Consensus       100 ~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         100 IIIEMLA---------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEeeccc---------HHHHHHHHhccCCCCEEEEEe
Confidence            9995422         134677889999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.07  E-value=0.0012  Score=47.11  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCcee
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD  176 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD  176 (231)
                      ..++.+||-+|||. |..+..+++ .|. .++.+|.+++-++.+++.-.       .+++..+-.+.      ..++.+|
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            44568999999986 556666666 555 77889999999999987532       23443333321      1235799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +|+..-.-        ...++...++++|+|++++...+.
T Consensus        99 ~vid~~G~--------~~~~~~~~~~~~~~G~i~~~G~~~  130 (174)
T d1f8fa2          99 FALESTGS--------PEILKQGVDALGILGKIAVVGAPQ  130 (174)
T ss_dssp             EEEECSCC--------HHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             EEEEcCCc--------HHHHHHHHhcccCceEEEEEeecC
Confidence            99843221        235678899999999998876543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.0012  Score=52.03  Aligned_cols=57  Identities=18%  Similarity=0.032  Sum_probs=48.0

Q ss_pred             CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      .+..|||||.|.|.++..|+.. + .+|+++|.++..++..++....    +++.++.+|...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEEEeCchhh
Confidence            3468999999999999999874 3 4899999999999999887642    468999999875

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.01  E-value=0.0018  Score=51.64  Aligned_cols=109  Identities=11%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             CcEEEecCCCchHHHHhcC------------------CCCeEEEEeCChHHHHHHHHHhccCCC-CCc--eEEEEccCCC
Q 026903          110 GRALVPGCGTGYDVVAMAS------------------PERYVVGLEISDIAIKKAEELSSSLPN-AKF--VSFLKADFFT  168 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~------------------~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~--i~~~~~d~~~  168 (231)
                      -+|.|+||.+|.+++.+..                  +-.+|..-|+-..=....=+.+..... ..+  +..+.+.+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            6899999999998865542                  123677777655433333332222111 111  3345567777


Q ss_pred             -CCCCCceeEEEeCCcccccCh-------------------------------HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          169 -WCPTELFDLIFDYTFFCAIEP-------------------------------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       169 -~~~~~~fD~i~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                       .+|..+.+++++..++||++.                               .+...+|+.=++=|+|||++++..+..
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence             788899999999999999742                               133567777778899999999888776


Q ss_pred             CC
Q 026903          217 SD  218 (231)
Q Consensus       217 ~~  218 (231)
                      +.
T Consensus       213 ~~  214 (359)
T d1m6ex_         213 RS  214 (359)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.98  E-value=0.013  Score=45.31  Aligned_cols=104  Identities=4%  Similarity=-0.088  Sum_probs=76.6

Q ss_pred             CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCCC---------CCCCceeE
Q 026903          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW---------CPTELFDL  177 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~---------~~~~~fD~  177 (231)
                      ..|+.+|||.-.-...+.. .+.+++=+|. |++++.-++.+.+.+.  ..+..++..|+.+.         +.....-+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            4667799998777766643 4557888885 7788776666654432  24577888888761         11235567


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +++-.++++++++...++++.+.+...||+.|++...
T Consensus       170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            8888999999999999999999999999998876443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.80  E-value=0.0016  Score=46.57  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--------CCCCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~~~  174 (231)
                      ..++.+||-+|||. |..+..+++ .|. .|+.+|.+++-++.+++.-..       .++...-.+        ......
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-------DCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-------cccCCccchhhhhhhHhhhhcCC
Confidence            34568999999998 888888888 776 799999999999999885321       223221111        112357


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      +|+++....-        ...+....+.+++| |.+++.....
T Consensus        99 ~d~vie~~G~--------~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2          99 VDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             BSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             CcEEEEeccc--------chHHHHHHHHhhcCCeEEEecCCCC
Confidence            9999843221        24578889999996 9998876643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.007  Score=45.86  Aligned_cols=79  Identities=16%  Similarity=0.048  Sum_probs=59.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ++++.+|--|++.|   ..+..|++.|.+|+.++.+++.++.+.+.+...+...++.++++|+.+..           .-
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            56789999999887   34566667999999999999988888776665544457889999999821           12


Q ss_pred             CceeEEEeCCccc
Q 026903          173 ELFDLIFDYTFFC  185 (231)
Q Consensus       173 ~~fD~i~~~~~~~  185 (231)
                      +..|+++.+....
T Consensus        88 g~iD~lVnnAg~~  100 (257)
T d1xg5a_          88 SGVDICINNAGLA  100 (257)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEeccccc
Confidence            5799999875443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.78  E-value=0.003  Score=44.44  Aligned_cols=94  Identities=18%  Similarity=0.149  Sum_probs=61.0

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCceeE
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD~  177 (231)
                      ..++.+||-.|||. |..+..+++ .|.+|+++|.+++-++.+++.-..       .++...-.+.      ...+.+|+
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-------~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-------LVVNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-------EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-------eecccccchhhhhcccccCCCceE
Confidence            45678999999987 566666666 788999999999999998874311       1221111111      01234555


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |++..     .    ...+....++|+|+|.+++....
T Consensus        98 v~~~~-----~----~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          98 VVTAV-----S----KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             EESSC-----C----HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EeecC-----C----HHHHHHHHHHhccCCceEecccc
Confidence            54322     1    23478889999999999886543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.76  E-value=0.0029  Score=44.53  Aligned_cols=87  Identities=17%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++|.=||+|.  +.++..|.+.|++|+++|.+++.++.+++.-.       +.-...+. +..  ...|+|+.     .+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-------~~~~~~~~-~~~--~~~DiIil-----av   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-------VDEAGQDL-SLL--QTAKIIFL-----CT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-------CSEEESCG-GGG--TTCSEEEE-----CS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-------cceeeeec-ccc--cccccccc-----cC
Confidence            3677888884  45566777799999999999998888776421       11111222 222  35788873     24


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                      |++...++++++...++++.+++-
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             cHhhhhhhhhhhhhhcccccceee
Confidence            567778899999999999986653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.73  E-value=0.0026  Score=45.16  Aligned_cols=94  Identities=19%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC------CCCCCceeE
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDL  177 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------~~~~~~fD~  177 (231)
                      .++..||-+|+|. |..+..+++ .| ..++++|.+++-++.+++....       +++..+-..      ......+|+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-------~~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-------HVVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-------EEEETTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-------eeecCcccHHHHHHHhhCCCCceE
Confidence            4668999999987 566666666 45 4899999999999998875421       233322111      112346999


Q ss_pred             EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      |+....-        ...++...+.|+++|+++++.+.
T Consensus       104 vid~~g~--------~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2         104 AMDFVGS--------QATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             EEESSCC--------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred             EEEecCc--------chHHHHHHHHHhCCCEEEEEeCc
Confidence            9854332        23478889999999999987753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.48  E-value=0.0065  Score=42.81  Aligned_cols=96  Identities=17%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             CCCCCcEEEecC-C-CchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-------CCCCc
Q 026903          106 ALPKGRALVPGC-G-TGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGc-G-~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~  174 (231)
                      ..++.+||-+|| | .|..+..+++ .| ..|+++|.+++-++.+++.-..       .++..+-.++       ...+.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-------YVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-------eeeccCCcCHHHHHHHHhhccc
Confidence            445689999997 3 4566666665 55 5999999999999999875321       2333333321       12457


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      ||+|+....-        ...++...++++|||++++..+..
T Consensus        98 ~d~vid~~g~--------~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          98 VDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             EEEEEESCCC--------HHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             chhhhccccc--------chHHHhhhhhcccCCEEEEecccc
Confidence            9999964332        234677889999999998876543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0012  Score=47.14  Aligned_cols=92  Identities=11%  Similarity=0.018  Sum_probs=63.7

Q ss_pred             CCCCcEEEecCCC--chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGCGT--GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~--G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+|.  |..+..+++ .|.+|++++.+++-.+.+++.-..       +++...-.+       ......+|
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~-------~vi~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-------QVINYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe-------EEEECCCCCHHHHHHHHhCCCCeE
Confidence            4568999986664  677888887 788999999999999999875421       233322222       11245799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+....-.         .+......++++|.+++...
T Consensus       100 ~v~d~~g~~---------~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2         100 VVYDSVGRD---------TWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             EEEECSCGG---------GHHHHHHTEEEEEEEEECCC
T ss_pred             EEEeCccHH---------HHHHHHHHHhcCCeeeeccc
Confidence            998644322         25678899999998876443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.41  E-value=0.0038  Score=44.67  Aligned_cols=95  Identities=13%  Similarity=-0.037  Sum_probs=63.9

Q ss_pred             CCCcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeC
Q 026903          108 PKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (231)
Q Consensus       108 ~~~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~  181 (231)
                      ++.+||--|++  .|..+.++++ .|.+|+++--+++-.+.+++.-...     +--...+..+   ....+.+|+|+..
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~-----vi~~~~~~~~~~~~~~~~gvD~vid~  105 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE-----VLAREDVMAERIRPLDKQRWAAAVDP  105 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE-----EEECC---------CCSCCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce-----eeecchhHHHHHHHhhccCcCEEEEc
Confidence            35789999864  4678888887 8999999999999999988754321     1111111111   2234589999964


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      -.-.         .+....++|+|||+++++....
T Consensus       106 vgg~---------~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2         106 VGGR---------TLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             STTT---------THHHHHHTEEEEEEEEECSCCS
T ss_pred             CCch---------hHHHHHHHhCCCceEEEeeccc
Confidence            3322         3678999999999998877654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.41  E-value=0.006  Score=43.00  Aligned_cols=87  Identities=17%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             cEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903          111 RALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (231)
Q Consensus       111 ~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~  186 (231)
                      +|+=+|||.  |.++..|.+.|.  +|+++|.+++.++.+++...       +.-...+... ......|+|+.     .
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------~~~~~~~~~~-~~~~~~dlIil-----a   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------IDEGTTSIAK-VEDFSPDFVML-----S   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------CSEEESCGGG-GGGTCCSEEEE-----C
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------chhhhhhhhh-hhccccccccc-----c
Confidence            588899986  445666666664  89999999999999987531       1111222211 11235788873     2


Q ss_pred             cChHHHHHHHHHHHhhcCCCcEEE
Q 026903          187 IEPEMRAAWAQKIKDFLKPDGELI  210 (231)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~l~  210 (231)
                      .+++....++..+...++++..+.
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             CCchhhhhhhhhhhcccccccccc
Confidence            455666788888999988887654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.26  E-value=0.0011  Score=47.55  Aligned_cols=98  Identities=14%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCC-------CCCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTW-------CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~-------~~~~~  174 (231)
                      ..++..|+-+|||. |..+..+++ .| .+|+++|.+++-++.|++.-...       ++. .+....       .....
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~-------~in~~~~~~~~~~~~~~~~g~G   99 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE-------CISPKDSTKPISEVLSEMTGNN   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE-------EECccccchHHHHHHHHhcccc
Confidence            34568999999986 555666665 66 48999999999999999875432       222 111111       12347


Q ss_pred             eeEEEeCCcccccChHHHHHHHHH-HHhhcCCCcEEEEEEccCCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQK-IKDFLKPDGELITLMFPISD  218 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~~~~~~  218 (231)
                      +|+++....-        ...+.. +..+++++|.++++..+...
T Consensus       100 ~d~vi~~~g~--------~~~~~~a~~~~~~~~G~~v~vG~~~~~  136 (176)
T d1d1ta2         100 VGYTFEVIGH--------LETMIDALASCHMNYGTSVVVGVPPSA  136 (176)
T ss_dssp             CCEEEECSCC--------HHHHHHHHTTSCTTTCEEEECSCCCTT
T ss_pred             ceEEEEeCCc--------hHHHHHHHHHhhcCCeEEEEEEccccc
Confidence            9988843221        112333 44445666999888766543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.19  E-value=0.0017  Score=46.36  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--------CCCCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~~~  174 (231)
                      ..++.+||-+|||. |..+..+++ .|. +|+++|.+++-++.+++.-..       .++...-.+        ......
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~-------~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-------ECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc-------EEEcCCCchhHHHHHHHHhcCCC
Confidence            45668999999987 555666666 564 899999999999999875422       233221111        112346


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEEEccCC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLMFPIS  217 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~  217 (231)
                      +|+++.....        ...+......+ +++|.+++..+...
T Consensus        98 ~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~~  133 (174)
T d1p0fa2          98 VDYAVECAGR--------IETMMNALQSTYCGSGVTVVLGLASP  133 (174)
T ss_dssp             BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             CcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEEEecC
Confidence            8998853322        12345555555 45699888776553

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.17  E-value=0.0045  Score=43.67  Aligned_cols=100  Identities=16%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026903          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF  184 (231)
Q Consensus       108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~  184 (231)
                      ++.+|+-+|+|. |..+...+. .|.+|+.+|.+++.++........     ++++...+-.... .-...|+|+.....
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aali  105 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV  105 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence            568999999997 777777666 899999999999999988776543     2444443322211 11358999976432


Q ss_pred             ccc-ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          185 CAI-EPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      .-- .|.   -+-+++.+.||||.++  ++.+.+
T Consensus       106 pG~~aP~---lIt~~mv~~Mk~GSVI--VDvaid  134 (168)
T d1pjca1         106 PGRRAPI---LVPASLVEQMRTGSVI--VDVAVD  134 (168)
T ss_dssp             TTSSCCC---CBCHHHHTTSCTTCEE--EETTCT
T ss_pred             CCcccCe---eecHHHHhhcCCCcEE--EEeecC
Confidence            211 111   0125688899999965  355553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.07  E-value=0.027  Score=37.70  Aligned_cols=86  Identities=14%  Similarity=0.045  Sum_probs=56.4

Q ss_pred             CcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEe
Q 026903          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~  180 (231)
                      ++|+-+|+|  .++..++    +.|..|+.+|.+++.++.+.+..       .+.++.+|..+.     ..-..+|.+++
T Consensus         1 M~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            367777775  4544444    38899999999999998877643       267899999882     12246888885


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEE
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGEL  209 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  209 (231)
                      .     .+.+....++..+.+.+.+.-++
T Consensus        72 ~-----t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          72 V-----TGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             C-----CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             c-----CCcHHHHHHHHHHHHHcCCceEE
Confidence            2     22233334555666777777544

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.96  E-value=0.029  Score=43.26  Aligned_cols=66  Identities=15%  Similarity=0.021  Sum_probs=51.7

Q ss_pred             CcEEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCC
Q 026903          110 GRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYT  182 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~  182 (231)
                      ++|||+.||.|.+..-+...|.+ +.++|+++.+++..+.+..       -.++.+|+.+....  ...|+++...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhHcccccEEeecc
Confidence            47999999999999888877874 5699999999988888763       24678899885332  3689998653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.72  E-value=0.00045  Score=49.43  Aligned_cols=94  Identities=17%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             CCCCCcEEEecC-CC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC
Q 026903          106 ALPKGRALVPGC-GT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGc-G~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~  181 (231)
                      ..++.+||-.|+ |. |..+..+++ .|.+|++++.+++..+.+++.-..     .+ +-..+... ......+|+|+..
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~-----~~-i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE-----EA-ATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS-----EE-EEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc-----ee-eehhhhhhhhhccccccccccc
Confidence            346689999884 43 677888887 788999999999888888764321     11 11111111 1223579999863


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      ..     +     .+....++|+|+|+++.+...
T Consensus        99 ~G-----~-----~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2          99 RG-----K-----EVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             SC-----T-----THHHHHTTEEEEEEEEEC---
T ss_pred             cc-----h-----hHHHHHHHHhcCCcEEEEeCC
Confidence            21     1     146678899999999876543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.0015  Score=46.82  Aligned_cols=91  Identities=19%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD  176 (231)
                      .++.+||-.|+  |.|..+..+++ .|.+++++.-+++..+.+++...     +  .++...-.+       ......+|
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga-----~--~vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV-----E--YVGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC-----S--EEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc-----c--ccccCCccCHHHHHHHHhCCCCEE
Confidence            34579999773  34777888877 78899999988888887775321     1  223222222       12345799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +|+....-         ..++.+.++|+++|+++.+.
T Consensus        97 ~v~d~~g~---------~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          97 VVLNSLAG---------EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EEEECCCT---------HHHHHHHHTEEEEEEEEECS
T ss_pred             EEEecccc---------hHHHHHHHHhcCCCEEEEEc
Confidence            99964431         23567789999999988754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.047  Score=40.75  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .+.++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            566788888899887   4567777899999999999998888777665543  46899999999932           1


Q ss_pred             CCceeEEEeCCccc
Q 026903          172 TELFDLIFDYTFFC  185 (231)
Q Consensus       172 ~~~fD~i~~~~~~~  185 (231)
                      -+..|+++.+....
T Consensus        82 ~g~idilinnag~~   95 (244)
T d1yb1a_          82 IGDVSILVNNAGVV   95 (244)
T ss_dssp             TCCCSEEEECCCCC
T ss_pred             cCCCceeEeecccc
Confidence            35799988875544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.47  E-value=0.0041  Score=44.53  Aligned_cols=92  Identities=17%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             CCCCcEEEecCCC--chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-------CCCCcee
Q 026903          107 LPKGRALVPGCGT--GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~--G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~fD  176 (231)
                      .++.+||-.|++.  |..+..+++ .|.+|+++.-+++..+.+++.-..       +++..+-.+.       .....+|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~-------~vi~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD-------AAFNYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-------EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh-------hhcccccccHHHHHHHHhhcCCCc
Confidence            4568999888865  677777777 888999999999988888875321       2233222221       1235799


Q ss_pred             EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      +|+..-.         .+.++...++|+++|.++++..
T Consensus       101 ~v~D~vG---------~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         101 CYFDNVG---------GEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             EEEESSC---------HHHHHHHGGGEEEEEEEEECCC
T ss_pred             eeEEecC---------chhhhhhhhhccCCCeEEeecc
Confidence            9995322         2346889999999999988654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.44  E-value=0.0067  Score=43.39  Aligned_cols=45  Identities=27%  Similarity=0.443  Sum_probs=37.4

Q ss_pred             CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhc
Q 026903          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSS  151 (231)
Q Consensus       107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~  151 (231)
                      .++.+|+-+|+|. |..+...+. .|.+|+.+|.++..++..+....
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            3568999999997 777777666 89999999999999988887653

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.39  E-value=0.017  Score=44.96  Aligned_cols=68  Identities=18%  Similarity=-0.037  Sum_probs=52.2

Q ss_pred             CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeC
Q 026903          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDY  181 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~  181 (231)
                      ...+.+|||+.||.|.+...|.+.|. .+.++|+++.+++..+.|....        ..+|+.+....  ..+|+++..
T Consensus         8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1           8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             cCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhhcceeeeeecc
Confidence            34568999999999999999988888 4567999999999999887432        24677664322  368999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.24  E-value=0.011  Score=41.62  Aligned_cols=101  Identities=22%  Similarity=0.184  Sum_probs=66.3

Q ss_pred             HHHcCCCC-CCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCC-C---CCCC
Q 026903          101 LHQSGALP-KGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-T---WCPT  172 (231)
Q Consensus       101 ~~~~~~~~-~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~---~~~~  172 (231)
                      +......+ +..||--|+  |.|..+.++++ .|.+|+++.-+++-.+.+++.-..     .+ +...+.. +   ....
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad-----~v-i~~~~~~~~~~~~~~~   88 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS-----EV-ISREDVYDGTLKALSK   88 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS-----EE-EEHHHHCSSCCCSSCC
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc-----ce-EeccchhchhhhcccC
Confidence            33333333 457888774  44788888888 889999999999888888776432     12 1112221 1   1223


Q ss_pred             CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                      +.+|+|+..-.         ...+....++|+|+|+++++....
T Consensus        89 ~gvd~vid~vg---------g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          89 QQWQGAVDPVG---------GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             CCEEEEEESCC---------THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             CCceEEEecCc---------HHHHHHHHHHhccCceEEEeeccC
Confidence            57999984322         134688999999999998876554

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.13  Score=38.09  Aligned_cols=73  Identities=21%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-------CCCCce
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~f  175 (231)
                      .+.++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+...      .+..+++|+.+.       ..-++.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHHHHhCCc
Confidence            467889999998887   4567777799999999999988877665442      477888999882       122579


Q ss_pred             eEEEeCCcc
Q 026903          176 DLIFDYTFF  184 (231)
Q Consensus       176 D~i~~~~~~  184 (231)
                      |+++.+...
T Consensus        78 DilVnnAg~   86 (244)
T d1pr9a_          78 DLLVNNAAV   86 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999976543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.01  E-value=0.044  Score=41.17  Aligned_cols=106  Identities=18%  Similarity=0.060  Sum_probs=72.8

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEE-eCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~i-D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      ++.++++|--|++.|   ..+..|++.|++|+.+ ..+++.++...+.+...+  .++.++.+|+.+..           
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHH
Confidence            466789998887776   5666777799988875 567777787777776654  46889999998721           


Q ss_pred             CCCceeEEEeCCccccc------ChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCAI------EPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~~------~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-+..|+++.+....+.      +.+..           ..+++.+...|+.+|.+++..
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            12479999987554432      22211           356666777788888766654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.89  E-value=0.051  Score=43.13  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             CcEEEecCCCchHHHHhcC---------CCCeEEEEeCChHHHHHHHHHhcc
Q 026903          110 GRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSS  152 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~~---------~~~~v~~iD~s~~~i~~a~~~~~~  152 (231)
                      ..|+|+|+|.|.++..+++         ....++.+|.|+...+..++.+..
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            5899999999999877754         223689999999988887776654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.12  Score=38.47  Aligned_cols=106  Identities=13%  Similarity=0.021  Sum_probs=69.2

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHh-ccCCCCCceEEEEccCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      .++++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+.+ ...+  .++.++.+|+.+..           
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            456789999998887   356677779999999999988777655443 2222  35888999998821           


Q ss_pred             CCCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCC--CcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKP--DGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~p--gG~l~~~~  213 (231)
                      .-+..|+++.+.....      ++.++.           ..+.+.+...|+.  +|.++...
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence            1147999998754322      233322           3445556666643  45665543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.79  E-value=0.057  Score=37.88  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CcEEEecCCCc--hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEE------EccCCCCCCCCceeEEEeC
Q 026903          110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL------KADFFTWCPTELFDLIFDY  181 (231)
Q Consensus       110 ~~vLDiGcG~G--~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~------~~d~~~~~~~~~fD~i~~~  181 (231)
                      ++|--+|+|.-  .++..|++.|+.|+.+|.+++.++..++.-......+.....      ..|..+..  ..+|+|+..
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--KDADVILIV   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH--TTCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh--cCCCEEEEE
Confidence            57888999873  445556669999999999999888877643111000001111      11111111  358888853


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  211 (231)
                           ++......+++++...|+++..+++
T Consensus        80 -----v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          80 -----VPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             -----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             -----EchhHHHHHHHHhhhccCCCCEEEE
Confidence                 2334557789999999999886643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=0.21  Score=36.89  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-------CCCCce
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~f  175 (231)
                      .+.++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+..      ..+.++.+|+.+.       ..-++.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~i   75 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV   75 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence            356789999998877   346666779999999999988777665544      2477889999882       122579


Q ss_pred             eEEEeCCc
Q 026903          176 DLIFDYTF  183 (231)
Q Consensus       176 D~i~~~~~  183 (231)
                      |+++.+..
T Consensus        76 DilVnnAg   83 (242)
T d1cyda_          76 DLLVNNAA   83 (242)
T ss_dssp             SEEEECCC
T ss_pred             eEEEECCc
Confidence            99997643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.13  Score=38.12  Aligned_cols=73  Identities=15%  Similarity=0.077  Sum_probs=54.1

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ++++.+|--|++.|   ..+..|++.|++|+.+|.+++.++...+.+.     .+..++.+|+.+..           .-
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            45678888888876   4456667799999999999998887766553     24788899998821           12


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        77 g~iDilVnnAg~   88 (243)
T d1q7ba_          77 GEVDILVNNAGI   88 (243)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCcceehhhhhh
Confidence            579999977543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.028  Score=39.94  Aligned_cols=91  Identities=18%  Similarity=0.157  Sum_probs=61.6

Q ss_pred             CcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903          110 GRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (231)
Q Consensus       110 ~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~  183 (231)
                      ..||-.|+.  .|..+.++++ .|.+|+++.-+++..+.+++.-..       .++..+-.+   ......+|.++..  
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad-------~vi~~~~~~~~~~l~~~~~~~vvD~--  103 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS-------RVLPRDEFAESRPLEKQVWAGAIDT--  103 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE-------EEEEGGGSSSCCSSCCCCEEEEEES--
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc-------cccccccHHHHHHHHhhcCCeeEEE--
Confidence            477776643  4677788887 899999999999998888775432       233322222   2334568888632  


Q ss_pred             ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                         +.    ...+....+.|+++|+++.+....
T Consensus       104 ---Vg----g~~~~~~l~~l~~~Griv~~G~~~  129 (177)
T d1o89a2         104 ---VG----DKVLAKVLAQMNYGGCVAACGLAG  129 (177)
T ss_dssp             ---SC----HHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             ---cc----hHHHHHHHHHhccccceEeecccC
Confidence               22    235788999999999998876544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.45  E-value=0.059  Score=37.69  Aligned_cols=95  Identities=14%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             CCCCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CCCC-------CCCCc
Q 026903          106 ALPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFTW-------CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~-------~~~~~  174 (231)
                      ..++.+||-.|||. |..+..+++ .| ..|+++|.+++..+.+++.-..       .++... -.+.       .....
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            45668999999884 455566665 56 4899999999999999875422       222221 1111       12347


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      +|+|+....-        ...++....++++||.+++....
T Consensus        99 ~D~vid~~G~--------~~~~~~~~~~~~~g~~~~~v~~~  131 (176)
T d2fzwa2          99 VDYSFECIGN--------VKVMRAALEACHKGWGVSVVVGV  131 (176)
T ss_dssp             BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CcEeeecCCC--------HHHHHHHHHhhcCCceeEEEEee
Confidence            9999954322        23567788899999877655433

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.44  E-value=0.13  Score=38.78  Aligned_cols=106  Identities=17%  Similarity=0.089  Sum_probs=71.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC-hHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      .+.++++|--|++.|   ..+..|++.|++|+.+|.+ ++.++...+.+...+  .++.++.+|+.+..           
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHH
Confidence            467789999999887   3567777799999999987 555665555554443  46889999998821           


Q ss_pred             CCCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 PTELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .-+..|+++.+.....      .+.+..           ..+++.+...|+.+|.+++..
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            1247899987754332      222222           344666777888888776654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.27  E-value=0.094  Score=34.73  Aligned_cols=90  Identities=10%  Similarity=-0.051  Sum_probs=59.0

Q ss_pred             EEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----CCCCceeEEEeCCcc
Q 026903          112 ALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFF  184 (231)
Q Consensus       112 vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~fD~i~~~~~~  184 (231)
                      |+-+  |.|..+..+++  .+..++.+|.++..++.....        .+.++.+|..+.     ..-..++.+++.   
T Consensus         3 ivI~--G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~---   69 (129)
T d2fy8a1           3 VVIC--GWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVN---   69 (129)
T ss_dssp             EEEE--SCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEEC---
T ss_pred             EEEE--CCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEe---
Confidence            4444  45667766666  566889999999988776542        378999998882     112357777742   


Q ss_pred             cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (231)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (231)
                        .+++...-++....+.+.|...+++....+
T Consensus        70 --~~~d~~n~~~~~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          70 --LESDSETIHCILGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             --CSSHHHHHHHHHHHHHHCSSSCEEEECSSG
T ss_pred             --ccchhhhHHHHHHHHHHCCCceEEEEEcCH
Confidence              223344445566677889998877765544

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.27  E-value=0.28  Score=38.08  Aligned_cols=113  Identities=12%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC--------------------C
Q 026903           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--------------------N  155 (231)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~--------------------~  155 (231)
                      +..++..  .+..-|+-+|||.-.....+..  ++..++=+|. |+.++.=++.+.+.+                    .
T Consensus        88 v~~Fl~~--~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~  164 (328)
T d1rjda_          88 ILEFLVA--NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  164 (328)
T ss_dssp             HHHHHHH--CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHH--CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCC
Confidence            4444433  2345899999999877766654  3335566666 444443222221100                    1


Q ss_pred             CCceEEEEccCCCC----------CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          156 AKFVSFLKADFFTW----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       156 ~~~i~~~~~d~~~~----------~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      .++.+++.+|+.+.          ......-++++-.++.+++++...++++.+.+.... |.+++.+.
T Consensus       165 s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~  232 (328)
T d1rjda_         165 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDP  232 (328)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEE
T ss_pred             CCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEecc
Confidence            24678899998872          122345688888999999999999999999988755 55555554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.17  E-value=0.096  Score=39.28  Aligned_cols=76  Identities=16%  Similarity=0.078  Sum_probs=58.2

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------------  170 (231)
                      .++++++|-.|++.|   ..+..|++.|.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..            
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            467889999999877   4466777799999999999998888877766554  45888999998821            


Q ss_pred             CCCceeEEEeCCc
Q 026903          171 PTELFDLIFDYTF  183 (231)
Q Consensus       171 ~~~~fD~i~~~~~  183 (231)
                      ..+..|+++++..
T Consensus        81 ~~g~idilinnag   93 (258)
T d1ae1a_          81 FDGKLNILVNNAG   93 (258)
T ss_dssp             TTSCCCEEEECCC
T ss_pred             hCCCcEEEecccc
Confidence            1246888887643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.13  E-value=0.065  Score=35.68  Aligned_cols=88  Identities=10%  Similarity=-0.002  Sum_probs=51.2

Q ss_pred             cEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C--CCceeEEEeC
Q 026903          111 RALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P--TELFDLIFDY  181 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~--~~~fD~i~~~  181 (231)
                      +++-+|+|  .++..++    +.|..|+.+|.+++.++.++...        ...+.+|..+..   .  -..+|.+++.
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~--------~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA--------THAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC--------SEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC--------CcceeeecccchhhhccCCccccEEEEE
Confidence            45556665  5544444    48999999999999988775322        356778887732   1  1357776632


Q ss_pred             CcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                           ++.+.....+......+.+...+++..
T Consensus        72 -----~~~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          72 -----IGANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             -----CCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             -----cCchHHhHHHHHHHHHHcCCCcEEeec
Confidence                 222222333444444455666666543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.07  E-value=0.1  Score=39.11  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             CCCCcEEEecCCCch---HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ++++.+|--|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..           .-
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            567899999988773   566777799999999999999998887776554  46889999998821           11


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        81 g~iDilVnnaG   91 (260)
T d1zema1          81 GKIDFLFNNAG   91 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCeehhhhc
Confidence            47999987643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.01  E-value=0.094  Score=36.69  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=58.8

Q ss_pred             CCCCCcEEEecCCCc-hHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCC-------CCCCc
Q 026903          106 ALPKGRALVPGCGTG-YDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTW-------CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G-~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~-------~~~~~  174 (231)
                      ..++.+||-+|+|.+ ..+..+++ .+ .+|+++|.+++-.+.+++....       ..+. .+-.+.       ...+.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-------ECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-------eEEecCCchhHHHHHHHHHhcCC
Confidence            445689999999753 34444444 55 5999999999999999886432       2222 122221       12357


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI  216 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~  216 (231)
                      +|+|+......        ..+......++++ |.+++..+.+
T Consensus        99 ~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~~~~  133 (176)
T d2jhfa2          99 VDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVGVPP  133 (176)
T ss_dssp             BSEEEECSCCH--------HHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             CCEEEecCCch--------hHHHHHHHHHhcCCcceEEecCCC
Confidence            99999644432        2345566777776 5555554444

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.011  Score=46.14  Aligned_cols=69  Identities=16%  Similarity=0.035  Sum_probs=51.5

Q ss_pred             CCcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026903          109 KGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~  181 (231)
                      +.+|+|+.||.|.+...|...|.   .+.++|+++.+++..+.+..      ...++.+|+.+...    ...+|+++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence            46899999999999888866564   36799999999998888763      24567777776332    2368999865


Q ss_pred             Cc
Q 026903          182 TF  183 (231)
Q Consensus       182 ~~  183 (231)
                      ..
T Consensus        76 pP   77 (343)
T d1g55a_          76 PP   77 (343)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.92  E-value=0.11  Score=39.06  Aligned_cols=75  Identities=20%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++.+.+.+...   .++.++.+|+.+..           .
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            456789999998877   335566679999999999999888877766543   35888999998821           1


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+..|+++.+..
T Consensus        80 ~g~iD~lVnnAG   91 (268)
T d2bgka1          80 HGKLDIMFGNVG   91 (268)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCcceeccccc
Confidence            147899997654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.89  E-value=0.15  Score=37.99  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=58.7

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .+.++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..           .
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            456788899998877   3466677799999999999999888877776543  46889999999821           1


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        85 ~g~iDilvnnag~   97 (251)
T d2c07a1          85 HKNVDILVNNAGI   97 (251)
T ss_dssp             CSCCCEEEECCCC
T ss_pred             cCCceeeeecccc
Confidence            2589999887543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.1  Score=39.01  Aligned_cols=77  Identities=17%  Similarity=0.100  Sum_probs=58.5

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .++++++|--|++.|   ..+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+...           
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            567889998888776   3456677799999999999998888877666543  468899999998311           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        86 ~g~iDilvnnAG~   98 (255)
T d1fmca_          86 LGKVDILVNNAGG   98 (255)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEeeeCCcC
Confidence            1479999987543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.88  E-value=0.19  Score=37.41  Aligned_cols=71  Identities=20%  Similarity=0.125  Sum_probs=52.3

Q ss_pred             cEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCcee
Q 026903          111 RALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELFD  176 (231)
Q Consensus       111 ~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~fD  176 (231)
                      .+|--|++.|   ..+..|++.|.+|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .-++.|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            3477787766   3455666799999999999999888777665543  46889999999821           125799


Q ss_pred             EEEeCCc
Q 026903          177 LIFDYTF  183 (231)
Q Consensus       177 ~i~~~~~  183 (231)
                      +++.+..
T Consensus        81 ilVnnAG   87 (255)
T d1gega_          81 VIVNNAG   87 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9997643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.18  Score=34.34  Aligned_cols=97  Identities=9%  Similarity=-0.024  Sum_probs=59.9

Q ss_pred             CcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEe
Q 026903          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD  180 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~  180 (231)
                      .+|+-+|+|  ..+..++    +.|..++.+|.+++......+....    ..+.++.+|..+..     .-+..|.+++
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEE
Confidence            367777775  4444443    4788999999998755443333322    24889999998821     1246788774


Q ss_pred             CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (231)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (231)
                      ..     +.+...-++....+.+.|...+++....+.
T Consensus        78 ~~-----~~d~~n~~~~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          78 LS-----DNDADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             CS-----SCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             cc-----ccHHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence            32     223334455566677788887777655443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.76  E-value=0.096  Score=39.28  Aligned_cols=77  Identities=16%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++...+.........++.++.+|+.+...           -
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            45678999998887   356777789999999999999888776655433223468899999988321           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57999998653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.71  E-value=0.12  Score=38.70  Aligned_cols=76  Identities=17%  Similarity=0.017  Sum_probs=58.0

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------------  170 (231)
                      .+.++++|--|++.|   ..+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..            
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            567889999998877   3466777799999999999999888777665543  46888999998721            


Q ss_pred             CCCceeEEEeCCc
Q 026903          171 PTELFDLIFDYTF  183 (231)
Q Consensus       171 ~~~~fD~i~~~~~  183 (231)
                      .....|+++.+..
T Consensus        83 ~~~~idilvnnAG   95 (259)
T d2ae2a_          83 FHGKLNILVNNAG   95 (259)
T ss_dssp             TTTCCCEEEECCC
T ss_pred             hCCCceEEEECCc
Confidence            1236899998754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.61  E-value=0.099  Score=39.24  Aligned_cols=78  Identities=13%  Similarity=-0.038  Sum_probs=59.3

Q ss_pred             CCCCCCcEEEecCCCch---HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------C
Q 026903          105 GALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------P  171 (231)
Q Consensus       105 ~~~~~~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~  171 (231)
                      +.++++++|--|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+....  .++.++.+|+.+..          .
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHH
Confidence            35678899999988873   566777799999999999998888777665543  36899999998721          0


Q ss_pred             --CCceeEEEeCCcc
Q 026903          172 --TELFDLIFDYTFF  184 (231)
Q Consensus       172 --~~~fD~i~~~~~~  184 (231)
                        .+..|+++.+...
T Consensus        82 ~~~g~idilvnnAG~   96 (259)
T d1xq1a_          82 MFGGKLDILINNLGA   96 (259)
T ss_dssp             HHTTCCSEEEEECCC
T ss_pred             HhCCCcccccccccc
Confidence              2568999987543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.58  E-value=0.28  Score=36.16  Aligned_cols=102  Identities=16%  Similarity=0.088  Sum_probs=68.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++++|-.|++.|   ..+..|++.|++|+.++.+.+.++...+..     ..++.++++|+.+...           -
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            56789999999876   345666679999999999998776554433     2468899999988221           1


Q ss_pred             CceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          173 ELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       173 ~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +..|+++.+....+      ++.++.           ..+.+.+...++.++.+++..
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~s  135 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG  135 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecc
Confidence            57999988754332      222221           244556667778887766543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.16  Score=37.89  Aligned_cols=79  Identities=14%  Similarity=0.010  Sum_probs=57.6

Q ss_pred             CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCC
Q 026903          108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (231)
Q Consensus       108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~  173 (231)
                      .++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++.+.+.+.......++.++.+|+.+..           .-+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4578888898776   34556667999999999999988887776654322347889999998832           114


Q ss_pred             ceeEEEeCCcccc
Q 026903          174 LFDLIFDYTFFCA  186 (231)
Q Consensus       174 ~fD~i~~~~~~~~  186 (231)
                      ..|+++.+.....
T Consensus        82 ~iDilVnnAg~~~   94 (254)
T d2gdza1          82 RLDILVNNAGVNN   94 (254)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CcCeecccccccc
Confidence            7999998765544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.23  E-value=0.32  Score=36.15  Aligned_cols=72  Identities=11%  Similarity=-0.035  Sum_probs=53.2

Q ss_pred             CcEEEecCCCch---HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCce
Q 026903          110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF  175 (231)
Q Consensus       110 ~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~f  175 (231)
                      +.+|--|++.|.   .+..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .-++.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            456777877663   456666799999999999998888777665543  46889999998832           12579


Q ss_pred             eEEEeCCc
Q 026903          176 DLIFDYTF  183 (231)
Q Consensus       176 D~i~~~~~  183 (231)
                      |+++.+..
T Consensus        81 DilVnnAG   88 (257)
T d2rhca1          81 DVLVNNAG   88 (257)
T ss_dssp             SEEEECCC
T ss_pred             CEEEeccc
Confidence            99997643

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.71  E-value=0.17  Score=38.13  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEccCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d~~~~~-----------~  171 (231)
                      ++++++|--|++.|   ..+..|++.|.+|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            55788999998877   44567777999999999999999888877665432 246899999998822           1


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            147899997743

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.28  Score=36.24  Aligned_cols=105  Identities=23%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-----------C
Q 026903          107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----------C  170 (231)
Q Consensus       107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----------~  170 (231)
                      +.++++|--|++.  |   ..+..|++.|++|+.++.+++..+.+.+.....+   +..+...|..+.           .
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC---CcceeecccchHHHHHHHHHHhhh
Confidence            5678999998865  5   3667788899999999999887777766555443   345666666551           1


Q ss_pred             CCCceeEEEeCCcccc---cC--------hH-----------HHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          171 PTELFDLIFDYTFFCA---IE--------PE-----------MRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       171 ~~~~fD~i~~~~~~~~---~~--------~~-----------~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ..+..|.++.+.....   ++        .+           ......+.+...+++++.+++..-
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss  145 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  145 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence            2357888887643321   10        00           113445556667788887666543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.61  E-value=0.42  Score=33.59  Aligned_cols=90  Identities=11%  Similarity=-0.041  Sum_probs=57.2

Q ss_pred             CcEEEec--CCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------CCCCceeEEE
Q 026903          110 GRALVPG--CGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLIF  179 (231)
Q Consensus       110 ~~vLDiG--cG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~fD~i~  179 (231)
                      ..||-.|  .|.|..+.++++ .|. .|+++.-+++......+....      -.++...-.+.      ..+..+|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga------d~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF------DAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC------SEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc------eEEeeccchhHHHHHHHHhccCceEEE
Confidence            6799877  456899999998 776 677778777665554443321      12333322221      1235799999


Q ss_pred             eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ....         ...+....++|+++|+++.+..
T Consensus       106 D~vG---------g~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         106 DNVG---------GDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             ESSC---------HHHHHHHHTTEEEEEEEEEC--
T ss_pred             ecCC---------chhHHHHhhhccccccEEEecc
Confidence            5332         1346789999999999987654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.37  E-value=0.21  Score=37.67  Aligned_cols=77  Identities=12%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEccCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d~~~~~-----------~  171 (231)
                      +.++++|--|++.|   ..+..|++.|.+|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            45788999998887   34667777999999999999988887776655432 246899999998832           1


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+..|+++.+..
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            147899998743

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.27  E-value=0.23  Score=36.86  Aligned_cols=75  Identities=12%  Similarity=-0.017  Sum_probs=56.7

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      +.++.+|--|++.|   ..+..|++.|++|+.+|.+++.++.+.+.....   .++.++.+|+.+...           -
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            56788888888776   345666779999999999999888877766432   468999999998221           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        81 G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            579999877543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.03  E-value=0.24  Score=37.06  Aligned_cols=77  Identities=14%  Similarity=0.079  Sum_probs=57.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEccCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d~~~~~-----------~  171 (231)
                      +.++.+|--|++.|   ..+..|++.|.+|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            45678888888876   34566677999999999999998887776654432 246899999998821           1


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            147999987743

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.93  E-value=0.18  Score=40.27  Aligned_cols=46  Identities=11%  Similarity=0.123  Sum_probs=38.3

Q ss_pred             CCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccC
Q 026903          108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSL  153 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~  153 (231)
                      ++..++|+|+-.|..+..++.    .+.+|+++|+++...+..+++...+
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            447999999999998877664    3458999999999999999887654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.31  Score=36.51  Aligned_cols=103  Identities=14%  Similarity=0.032  Sum_probs=68.9

Q ss_pred             CCcE-EEecCCCch---HHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          109 KGRA-LVPGCGTGY---DVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       109 ~~~v-LDiGcG~G~---~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +++| |-=|++.|.   .+..|++. |.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..           .-
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4566 555665552   23455554 7899999999999888877766543  46889999998822           12


Q ss_pred             CceeEEEeCCcccccC------hHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          173 ELFDLIFDYTFFCAIE------PEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       173 ~~fD~i~~~~~~~~~~------~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      +..|+++.+..+.+..      +++.           ..+.+.+...|+++|.++.+.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            5799999886543211      1111           245677778889999877644

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.32  Score=36.07  Aligned_cols=72  Identities=17%  Similarity=0.048  Sum_probs=54.2

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .+.++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+..      .++.++.+|+.+...           
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            356789999998877   345666779999999999998887776554      247889999988211           


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+..|+++.+..
T Consensus        77 ~g~iDilVnnAG   88 (250)
T d1ydea1          77 FGRLDCVVNNAG   88 (250)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEeccc
Confidence            147999998754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.46  E-value=0.33  Score=35.85  Aligned_cols=74  Identities=20%  Similarity=0.099  Sum_probs=55.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      .++++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+...     .++.++.+|+.+...           
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            456789999998887   4566777799999999999988877766553     358889999988321           


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        78 ~g~idilinnAG~   90 (244)
T d1nffa_          78 FGGLHVLVNNAGI   90 (244)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCeEEEECCcc
Confidence            1478999877543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.34  E-value=0.11  Score=36.97  Aligned_cols=75  Identities=12%  Similarity=-0.060  Sum_probs=52.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEE
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLI  178 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i  178 (231)
                      .+++++||-.|++.|   ..+..+++.|.+|+.++.+++.++...+.+...   .++.+...|+.+..    .-+..|++
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhcCcCee
Confidence            677899999998776   345566679999999999998887776655432   13456667766511    12468999


Q ss_pred             EeCCc
Q 026903          179 FDYTF  183 (231)
Q Consensus       179 ~~~~~  183 (231)
                      +++..
T Consensus        97 in~Ag  101 (191)
T d1luaa1          97 FTAGA  101 (191)
T ss_dssp             EECCC
T ss_pred             eecCc
Confidence            98744

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.16  E-value=0.33  Score=35.81  Aligned_cols=70  Identities=17%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      ++++++|--|++.|   ..+..|++.|++|+.+|.+++.++.+.+..       +..++.+|+.+...           -
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~   75 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHL   75 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence            56788999998887   345666679999999999998887766543       36788999988211           1


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        76 g~iDilVnnAG   86 (242)
T d1ulsa_          76 GRLDGVVHYAG   86 (242)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCceEEEECCc
Confidence            47999887643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.83  E-value=0.015  Score=40.33  Aligned_cols=96  Identities=11%  Similarity=-0.011  Sum_probs=54.3

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      ++|+-+|+|. | .++..|++.|+.|+.++.+++..+...    .......................+|+|+..-     
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v-----   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPDFLATSDLLLVTL-----   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHHHHHTCSEEEECS-----
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc----cccCCccccccccccchhhhhcccceEEEee-----
Confidence            4789999987 3 556666778999999998764211100    0000000000000001111113689988532     


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      ...+...+++.+...+.++..++...-
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             cccchHHHHHhhccccCcccEEeeccC
Confidence            223446778999999999988776543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.71  E-value=0.38  Score=35.72  Aligned_cols=73  Identities=11%  Similarity=0.000  Sum_probs=54.6

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+...     .++.++++|+.+..           .
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CceEEEEcccCCHHHHHHHHHHHHHH
Confidence            356789999999887   4566777799999999999987776554432     46889999998821           1


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -++.|+++.+..
T Consensus        77 ~g~iDilVnnAg   88 (254)
T d1hdca_          77 FGSVDGLVNNAG   88 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCccEEEecCc
Confidence            147998887644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.31  E-value=0.3  Score=36.90  Aligned_cols=77  Identities=17%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++++++|--|++.|   ..+..|++.|++|+.+|.++..++...+.+.... ..++.++.+|+.+..           .
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            567789999998887   5566677799999999999988776655432211 135788999998821           1


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      .+..|+++.+..
T Consensus       101 ~g~iDilvnnAg  112 (294)
T d1w6ua_         101 AGHPNIVINNAA  112 (294)
T ss_dssp             TCSCSEEEECCC
T ss_pred             ccccchhhhhhh
Confidence            257899987754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.57  Score=35.60  Aligned_cols=78  Identities=15%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             CCCCCcEEEecCCCch---HHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CCCCceEEEEccCCCCC---------
Q 026903          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTWC---------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~~~~i~~~~~d~~~~~---------  170 (231)
                      .++++.+|--|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...   ....++.++.+|+.+..         
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            3567899999988873   35566679999999999998887766544321   12246889999999832         


Q ss_pred             --CCCceeEEEeCCc
Q 026903          171 --PTELFDLIFDYTF  183 (231)
Q Consensus       171 --~~~~fD~i~~~~~  183 (231)
                        .-+..|+++.+..
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              1247999998754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.00  E-value=0.42  Score=35.45  Aligned_cols=73  Identities=15%  Similarity=0.076  Sum_probs=55.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      ++++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+.+.     .++.++.+|+.+...           -
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG-----PAACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            56788999998877   4466677799999999999988877666552     358889999988221           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        78 g~iDilVnnAg~   89 (256)
T d1k2wa_          78 GSIDILVNNAAL   89 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCccEEEeeccc
Confidence            479999987543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=1.7  Score=33.09  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=43.5

Q ss_pred             CcEEEecCCCchHHHHhc----CCCCeEEEEeCC----hHHHHHHHHHhccCCCCCceEEEEccCCCCC------CCCce
Q 026903          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC------PTELF  175 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s----~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~f  175 (231)
                      ++||-.| |+|..+..++    +.|..|+++|..    ........+..     .+++.++++|+.+..      ....+
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-----GKHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-----TSCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-----CCCCEEEEeecCCHHHHHHHHhccCC
Confidence            3677776 5776665554    488999999852    22222222211     136899999999822      23468


Q ss_pred             eEEEeCCccc
Q 026903          176 DLIFDYTFFC  185 (231)
Q Consensus       176 D~i~~~~~~~  185 (231)
                      |+|+......
T Consensus        75 d~ViHlAa~~   84 (338)
T d1udca_          75 DTVIHFAGLK   84 (338)
T ss_dssp             SEEEECCSCC
T ss_pred             CEEEECCCcc
Confidence            9999765443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.46  E-value=0.61  Score=32.08  Aligned_cols=94  Identities=11%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             CCCCCcEEEecCCCch-HHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--------CCCCc
Q 026903          106 ALPKGRALVPGCGTGY-DVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------CPTEL  174 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G~-~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~~~  174 (231)
                      ..++.+|+-+|||.+. .+..+++ .+. .|+++|.+++-++.+++.-..       +++...-.+.        .....
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd-------~~in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT-------DFVNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc-------EEEcCCCcchhHHHHHHhhccCC
Confidence            4456899999999844 3444444 444 899999999999999875321       2333221111        11346


Q ss_pred             eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEc
Q 026903          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (231)
Q Consensus       175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (231)
                      +|+|+....-        ...+......++++ |++++..+
T Consensus        99 ~d~vid~~G~--------~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          99 VDFSLECVGN--------VGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             cceeeeecCC--------HHHHHHHHHHhhCCCcceeEEEe
Confidence            9999854332        12345566666665 55544444

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.41  E-value=0.66  Score=34.72  Aligned_cols=72  Identities=17%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ++++++|--|++.|   ..+..|++.|.+|+.+|.+++.++...+...     .++.++.+|+.+..           .-
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----DNVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeeEEecccccHHHHHHHHHHHHHHh
Confidence            56788999998776   3456666799999999999988876655442     35889999998821           11


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      +..|+++.+..
T Consensus        78 g~idilvnnAG   88 (276)
T d1bdba_          78 GKIDTLIPNAG   88 (276)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCccccccccc
Confidence            47899987654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.41  E-value=0.23  Score=35.11  Aligned_cols=91  Identities=12%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             CCCCcEEEecCC---CchHHHHhcC-CCCeEEEEeCC----hHHHHHHHHHhccCCCCCceEEEEc---cCCCCC-----
Q 026903          107 LPKGRALVPGCG---TGYDVVAMAS-PERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKA---DFFTWC-----  170 (231)
Q Consensus       107 ~~~~~vLDiGcG---~G~~~~~l~~-~~~~v~~iD~s----~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~-----  170 (231)
                      .++..||-+.+|   .|..+..+++ .|.+|+++--+    ++..+.+++.-.     +  .++..   +..+..     
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa-----d--~vi~~~~~~~~~~~~~v~~   99 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA-----T--QVITEDQNNSREFGPTIKE   99 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC-----S--EEEEHHHHHCGGGHHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc-----c--EEEeccccchhHHHHHHHH
Confidence            345677777333   3677777777 78888887433    333444444321     1  22222   222211     


Q ss_pred             ----CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          171 ----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 ----~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                          ....+|+|+..     +..+    .+....++|+|+|+++++.
T Consensus       100 ~~~~~g~~vdvv~D~-----vg~~----~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         100 WIKQSGGEAKLALNC-----VGGK----SSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHTCCEEEEEES-----SCHH----HHHHHHHTSCTTCEEEECC
T ss_pred             HHhhccCCceEEEEC-----CCcc----hhhhhhhhhcCCcEEEEEC
Confidence                13468999843     2222    3566789999999987654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.95  E-value=0.17  Score=37.75  Aligned_cols=54  Identities=15%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             EEEEccCCC---CCCCCceeEEEeCCcccc--------cC-hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          160 SFLKADFFT---WCPTELFDLIFDYTFFCA--------IE-PEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       160 ~~~~~d~~~---~~~~~~fD~i~~~~~~~~--------~~-~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .|+.+|..+   -.+++++|+|++...+.-        .+ .+.....+.++.++|+|+|.+++..
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            467778777   457789999998765421        01 1344677889999999999988754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.56  E-value=0.55  Score=34.73  Aligned_cols=103  Identities=17%  Similarity=0.076  Sum_probs=68.0

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      .++++++|--|++.|   ..+..|++.|.+|+.+|.+++.++...+...     .+..++.+|+.+..           .
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            356788998898776   4456667799999999999988887766553     35778899998821           1


Q ss_pred             CCceeEEEeCCcccc------cChHHH-----------HHHHHHHHhhcC-CCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCA------IEPEMR-----------AAWAQKIKDFLK-PDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~------~~~~~~-----------~~~l~~~~~~L~-pgG~l~~~~  213 (231)
                      -+..|+++.+.....      ++.++.           ..+.+.+...|+ .+|.++.+.
T Consensus        78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence            157899998754322      222222           234455555664 467766543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.48  E-value=0.8  Score=33.29  Aligned_cols=66  Identities=11%  Similarity=0.018  Sum_probs=46.6

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEE
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLI  178 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i  178 (231)
                      ++++++|--|++.|   ..+..|++.|++|+.+|.+++.++..           ...++.+|+.+..     .-+..|++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-----------~~~~~~~Dv~~~~~~~~~~~g~iD~l   70 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----------GHRYVVCDLRKDLDLLFEKVKEVDIL   70 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----------CSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-----------CCcEEEcchHHHHHHHHHHhCCCcEE
Confidence            46789999998876   33556667999999999998765432           1356778887621     12579998


Q ss_pred             EeCCc
Q 026903          179 FDYTF  183 (231)
Q Consensus       179 ~~~~~  183 (231)
                      +.+..
T Consensus        71 VnnAG   75 (234)
T d1o5ia_          71 VLNAG   75 (234)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            87643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.26  Score=35.01  Aligned_cols=98  Identities=13%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------CCC--------------CceEEEEccC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------PNA--------------KFVSFLKADF  166 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~~~--------------~~i~~~~~d~  166 (231)
                      ++|--+|+|. | ..+..++..|+.|+.+|.+++.++.+.++....       +..              .++.+. .|+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-chh
Confidence            4888999987 3 445666679999999999999998887654321       110              012221 122


Q ss_pred             CCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       167 ~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .+..  ...|+|+-. +.+.+  +.+.++++++.+.++++.+|...+
T Consensus        84 ~~a~--~~ad~ViEa-v~E~l--~~K~~v~~~l~~~~~~~~ilasnT  125 (192)
T d1f0ya2          84 ASVV--HSTDLVVEA-IVENL--KVKNELFKRLDKFAAEHTIFASNT  125 (192)
T ss_dssp             HHHT--TSCSEEEEC-CCSCH--HHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             Hhhh--cccceehhh-cccch--hHHHHHHHHHhhhcccCceeeccC
Confidence            1111  346777732 23333  677889999999999998776544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.72  E-value=0.62  Score=34.41  Aligned_cols=62  Identities=18%  Similarity=0.173  Sum_probs=43.9

Q ss_pred             CCCCcEEEecCCCch---HHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903          107 LPKGRALVPGCGTGY---DVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~---~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  168 (231)
                      +.++.+|--|++.|.   .+..|++   .|.+|+.++.+++.++.+.+.+.......++.++.+|+.+
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            445566666777763   3455554   6889999999999888877655433223468999999988

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=87.58  E-value=0.61  Score=34.67  Aligned_cols=76  Identities=16%  Similarity=0.057  Sum_probs=54.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCCh-HHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~-~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~  171 (231)
                      ++++.+|--|++.|   ..+..|++.|.+|+.++.+. ..++...+.+...+  .++.++.+|+.+..           .
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56788898888887   34566777999999999875 45665555554443  46888999998821           1


Q ss_pred             CCceeEEEeCCcc
Q 026903          172 TELFDLIFDYTFF  184 (231)
Q Consensus       172 ~~~fD~i~~~~~~  184 (231)
                      -+..|+++.+...
T Consensus        83 ~G~iDiLVnnAG~   95 (261)
T d1geea_          83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEeecccee
Confidence            1478999987543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.55  E-value=1.2  Score=32.59  Aligned_cols=72  Identities=11%  Similarity=0.024  Sum_probs=48.2

Q ss_pred             cEEEecCCCc---hHHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCce
Q 026903          111 RALVPGCGTG---YDVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF  175 (231)
Q Consensus       111 ~vLDiGcG~G---~~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~f  175 (231)
                      .||--|++.|   ..+..|++.|++|+..|. +++.++...+.....+  .++.++.+|+.+..           .-++.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4566676665   234556669999988775 5667777666554433  46889999998821           12579


Q ss_pred             eEEEeCCcc
Q 026903          176 DLIFDYTFF  184 (231)
Q Consensus       176 D~i~~~~~~  184 (231)
                      |+++.+...
T Consensus        81 DiLVnnAg~   89 (244)
T d1edoa_          81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             Ccccccccc
Confidence            999987543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.45  E-value=0.79  Score=28.46  Aligned_cols=66  Identities=11%  Similarity=0.064  Sum_probs=40.1

Q ss_pred             CcEEEecC-CCc--hHHHHhcCCCCeEEEEeCCh-HHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          110 GRALVPGC-GTG--YDVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       110 ~~vLDiGc-G~G--~~~~~l~~~~~~v~~iD~s~-~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      ++|.=+|. |+|  .++..|...|+.|.|.|... ...+...+    .+    +.+..+...+..  ...|+|+.+..+.
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~----~G----i~v~~g~~~~~i--~~~d~vV~S~AI~   78 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ----AG----AKIYIGHAEEHI--EGASVVVVSSAIK   78 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH----TT----CEEEESCCGGGG--TTCSEEEECTTSC
T ss_pred             CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH----CC----CeEEECCccccC--CCCCEEEECCCcC
Confidence            57888874 445  44566667999999999863 22332222    22    556555544433  3478888766643

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.42  E-value=1.3  Score=33.32  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=43.0

Q ss_pred             cEEEecCCCchHHHHh----cCCCCeEEEEe-CChHHHHHHHHHhccCCCCCceEEEEccCCCCC------CCCceeEEE
Q 026903          111 RALVPGCGTGYDVVAM----ASPERYVVGLE-ISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------PTELFDLIF  179 (231)
Q Consensus       111 ~vLDiGcG~G~~~~~l----~~~~~~v~~iD-~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~fD~i~  179 (231)
                      +||-.| |+|..+..+    ++.|.+|+++| ++........+.....   .+++++.+|+.+..      ....+|.|+
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi   77 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSCF   77 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence            677555 567665444    45899999998 3332222212222222   46899999998821      223579998


Q ss_pred             eCCcccc
Q 026903          180 DYTFFCA  186 (231)
Q Consensus       180 ~~~~~~~  186 (231)
                      ......+
T Consensus        78 h~aa~~~   84 (338)
T d1orra_          78 HLAGQVA   84 (338)
T ss_dssp             ECCCCCC
T ss_pred             eeccccc
Confidence            7665543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.75  Score=34.20  Aligned_cols=77  Identities=16%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      ++++++|--|++.|   ..+..|++.|.+|+.++.+++.++.+.+...... ...+.+..+|..+..           ..
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            56789999999987   4566677799999999999999888766543221 135778888877621           12


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      +..|+++.+...
T Consensus        91 g~~~~li~nag~  102 (269)
T d1xu9a_          91 GGLDMLILNHIT  102 (269)
T ss_dssp             TSCSEEEECCCC
T ss_pred             CCcccccccccc
Confidence            468888776443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.23  E-value=1.5  Score=31.97  Aligned_cols=72  Identities=15%  Similarity=0.130  Sum_probs=51.4

Q ss_pred             cEEEecCCCch---HHHHhcCCCCe-------EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------
Q 026903          111 RALVPGCGTGY---DVVAMASPERY-------VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------  170 (231)
Q Consensus       111 ~vLDiGcG~G~---~~~~l~~~~~~-------v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  170 (231)
                      .||--|++.|.   .+..|++.|.+       |+.++.+++.++...+.+...+  .++.++.+|+.+..          
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            35667877763   34556667765       8999999999888877665543  46889999999822          


Q ss_pred             -CCCceeEEEeCCcc
Q 026903          171 -PTELFDLIFDYTFF  184 (231)
Q Consensus       171 -~~~~fD~i~~~~~~  184 (231)
                       .-+..|+++.+...
T Consensus        81 ~~~g~iDilvnnAg~   95 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGV   95 (240)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HHcCCcceeeccccc
Confidence             12579999977543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.21  E-value=0.35  Score=36.00  Aligned_cols=77  Identities=12%  Similarity=-0.029  Sum_probs=54.4

Q ss_pred             CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHh-ccCCCCCceEEEEccCCCCC-----------
Q 026903          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFTWC-----------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~-----------  170 (231)
                      .+.++++|--|++.|   ..+..|++.|++|+.+|.+++.++...+.. ...+  .++.++.+|+.+..           
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            466789999998776   345667779999999999977665544433 2222  35889999998821           


Q ss_pred             CCCceeEEEeCCcc
Q 026903          171 PTELFDLIFDYTFF  184 (231)
Q Consensus       171 ~~~~fD~i~~~~~~  184 (231)
                      .-+..|+++.+...
T Consensus        84 ~~g~iDilVnnAg~   97 (260)
T d1h5qa_          84 DLGPISGLIANAGV   97 (260)
T ss_dssp             HSCSEEEEEECCCC
T ss_pred             HhCCCcEecccccc
Confidence            12579999887543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.87  E-value=0.33  Score=35.56  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=38.1

Q ss_pred             EEEEccCCC---CCCCCceeEEEeCCccccc--------Ch----HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          160 SFLKADFFT---WCPTELFDLIFDYTFFCAI--------EP----EMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       160 ~~~~~d~~~---~~~~~~fD~i~~~~~~~~~--------~~----~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .++++|..+   -.+++++|+|++...+.--        +.    +.....++++.++|+|+|.+++..
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            368888877   4567899999987554210        11    223567889999999999887654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.80  E-value=0.49  Score=37.07  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=42.6

Q ss_pred             CCcEEEecCCCchHHHHh----cCCCCeEEEEeCChHHHHHHHHHhccC-C--------------CCCceEEEEccCCCC
Q 026903          109 KGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSL-P--------------NAKFVSFLKADFFTW  169 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l----~~~~~~v~~iD~s~~~i~~a~~~~~~~-~--------------~~~~i~~~~~d~~~~  169 (231)
                      +++||--|. +|..+..|    ++.|+.|+++|--.............. +              ...+++|+.+|+.+.
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            467888775 77666555    458999999994222211111110000 0              013689999999882


Q ss_pred             ------CCCCceeEEEeCCc
Q 026903          170 ------CPTELFDLIFDYTF  183 (231)
Q Consensus       170 ------~~~~~fD~i~~~~~  183 (231)
                            +....+|+|+....
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa   99 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGE   99 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCS
T ss_pred             HHHHHHHHhhcchheecccc
Confidence                  12236799986554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.35  E-value=1  Score=33.09  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  172 (231)
                      +.++++|--|++.|   ..+..|++.|++|+.+|.+++..+.+.+.        +..++++|+.+..           .-
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~--------~~~~~~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI--------GGAFFQVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH--------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence            56788999998776   34566677999999999998876655442        2467889998821           11


Q ss_pred             CceeEEEeCCc
Q 026903          173 ELFDLIFDYTF  183 (231)
Q Consensus       173 ~~fD~i~~~~~  183 (231)
                      ++.|+++.+..
T Consensus        75 G~iDiLVnnAG   85 (248)
T d2d1ya1          75 GRVDVLVNNAA   85 (248)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCeEEEeCc
Confidence            57999987643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.12  E-value=0.65  Score=32.67  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=26.3

Q ss_pred             CcEEEecCCCchHHHHh---cCCCCeEEEEeCChHHHHHHHH
Q 026903          110 GRALVPGCGTGYDVVAM---ASPERYVVGLEISDIAIKKAEE  148 (231)
Q Consensus       110 ~~vLDiGcG~G~~~~~l---~~~~~~v~~iD~s~~~i~~a~~  148 (231)
                      ++|--+|.|  +.++.+   +..|.+|+|+|++++.++..+.
T Consensus         1 MkI~ViGlG--~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           1 MKIAVAGSG--YVGLSLGVLLSLQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             CEEEEECCS--HHHHHHHHHHTTTSEEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCC--hhHHHHHHHHHCCCcEEEEECCHHHHHHHhh
Confidence            356677765  444333   2378999999999999887764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=83.98  E-value=1.2  Score=32.58  Aligned_cols=74  Identities=16%  Similarity=0.084  Sum_probs=49.8

Q ss_pred             CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903          107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (231)
Q Consensus       107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~  172 (231)
                      ++++.+|--|++.|   ..+..|++.|++|+.+|.++.-  .+.+.....+  .++.++.+|+.+...           -
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            56788898888776   4466677799999999987642  2222222222  468899999988221           1


Q ss_pred             CceeEEEeCCcc
Q 026903          173 ELFDLIFDYTFF  184 (231)
Q Consensus       173 ~~fD~i~~~~~~  184 (231)
                      ++.|+++.+...
T Consensus        79 G~iDilVnnAG~   90 (247)
T d2ew8a1          79 GRCDILVNNAGI   90 (247)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999887543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=83.78  E-value=0.49  Score=35.74  Aligned_cols=56  Identities=23%  Similarity=0.322  Sum_probs=40.5

Q ss_pred             eEEEEccCCC---CCCCCceeEEEeCCcccc--------cCh----HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903          159 VSFLKADFFT---WCPTELFDLIFDYTFFCA--------IEP----EMRAAWAQKIKDFLKPDGELITLMF  214 (231)
Q Consensus       159 i~~~~~d~~~---~~~~~~fD~i~~~~~~~~--------~~~----~~~~~~l~~~~~~L~pgG~l~~~~~  214 (231)
                      =.++++|..+   ..+++++|+|+....+.-        ...    +.....+..+.++|+|+|.+++..-
T Consensus        13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            4788898877   456789999998754421        111    2246778999999999999987653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.74  E-value=2.4  Score=32.14  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=44.2

Q ss_pred             CCCcEEEecCCCchHHHHhc----CCCCeEEEEeC----ChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCce
Q 026903          108 PKGRALVPGCGTGYDVVAMA----SPERYVVGLEI----SDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELF  175 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~----s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~f  175 (231)
                      .+++||-.| |+|..+..+.    +.|.+|+++|.    +...++..+....... ..+++++.+|..+..    .....
T Consensus        15 ~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-WSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-HTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcc-cCCeeEEeeccccccccccccccc
Confidence            346888875 6777666554    48999999985    3334444443322111 135899999998822    12345


Q ss_pred             eEEEeCCc
Q 026903          176 DLIFDYTF  183 (231)
Q Consensus       176 D~i~~~~~  183 (231)
                      +.|+....
T Consensus        93 ~~v~~~~a  100 (341)
T d1sb8a_          93 DYVLHQAA  100 (341)
T ss_dssp             SEEEECCS
T ss_pred             cccccccc
Confidence            66654443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.72  E-value=0.61  Score=33.13  Aligned_cols=39  Identities=21%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEE  148 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~  148 (231)
                      ++|--+|+|. | -++..+++.|++|+|+|.+++.++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc
Confidence            3577788876 3 2345555699999999999998887653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.33  E-value=0.8  Score=33.85  Aligned_cols=76  Identities=18%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             CCCCcEEEecCCCch---HHHHhcCCCCeEEEEeCC-hHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------  171 (231)
                      ++++.+|--|++.|.   .+..|++.|.+|+.++.+ ++.++...+...... ..++.++.+|+.+...           
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            356788888888773   556677799999999987 455665554432211 1358899999998211           


Q ss_pred             CCceeEEEeCCc
Q 026903          172 TELFDLIFDYTF  183 (231)
Q Consensus       172 ~~~fD~i~~~~~  183 (231)
                      -+..|+++.+..
T Consensus        81 ~G~iDiLVnnAG   92 (260)
T d1x1ta1          81 MGRIDILVNNAG   92 (260)
T ss_dssp             HSCCSEEEECCC
T ss_pred             hCCCcEEEeecc
Confidence            147999987754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.30  E-value=0.95  Score=27.69  Aligned_cols=66  Identities=15%  Similarity=0.048  Sum_probs=37.0

Q ss_pred             cEEEec-CCCc--hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          111 RALVPG-CGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       111 ~vLDiG-cG~G--~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +|.=+| ||.|  .++..|.+.|..|.|.|..+.....   .+...+    +.+..+.-.+..  ...|+|+....+.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~---~L~~~G----i~i~~gh~~~~i--~~~d~vV~SsAI~   71 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA---YLRKLG----IPIFVPHSADNW--YDPDLVIKTPAVR   71 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HHHHTT----CCEESSCCTTSC--CCCSEEEECTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH---HHHHCC----CeEEeeeccccc--CCCCEEEEecCcC
Confidence            444444 3344  4456666799999999988632222   233333    445444222222  2478888776654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=83.17  E-value=0.56  Score=35.98  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             CCCcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------CCCceeE
Q 026903          108 PKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------PTELFDL  177 (231)
Q Consensus       108 ~~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~fD~  177 (231)
                      .+++||-.|+ +|..+..++    +.|..|+++|.++.......+..   ...++++++.+|+.+..      ....+|+
T Consensus         7 ~~KkILVTG~-tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~---~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~   82 (356)
T d1rkxa_           7 QGKRVFVTGH-TGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA---RVADGMQSEIGDIRDQNKLLESIREFQPEI   82 (356)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHT---TTTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhh---hcccCCeEEEeeccChHhhhhhhhhchhhh
Confidence            3579999884 466655544    48999999998654332222222   12346999999998732      1235677


Q ss_pred             EEeCCc
Q 026903          178 IFDYTF  183 (231)
Q Consensus       178 i~~~~~  183 (231)
                      |+....
T Consensus        83 v~~~aa   88 (356)
T d1rkxa_          83 VFHMAA   88 (356)
T ss_dssp             EEECCS
T ss_pred             hhhhhc
Confidence            775544

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.04  E-value=1.7  Score=31.69  Aligned_cols=105  Identities=20%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             CCCCCcEEEecCCC----ch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------
Q 026903          106 ALPKGRALVPGCGT----GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------  170 (231)
Q Consensus       106 ~~~~~~vLDiGcG~----G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  170 (231)
                      .++++++|--|++.    |. .+..|++.|++|+..+.+++..+.+.+.....+   +..++++|+.+..          
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~   81 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVK   81 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHH
Confidence            46778999999643    33 566777799999999999887776665544432   4678899998821          


Q ss_pred             -CCCceeEEEeCCccc----------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903          171 -PTELFDLIFDYTFFC----------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       171 -~~~~fD~i~~~~~~~----------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       .-+..|+++.+..+.          ..+.++.           ....+.+...++.+|.++...
T Consensus        82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence             114799988765332          1121211           233445556777888876554

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=81.85  E-value=0.63  Score=32.68  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026903          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP  171 (231)
Q Consensus       110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~  171 (231)
                      .+|--||+|. | ..+..++..|.+|+.+|.+++.++.+.++....       + ..        .++.. ..+....  
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--   81 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF--   81 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG--
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc--
Confidence            4788899986 3 334556668999999999999988876653321       1 00        12222 1222211  


Q ss_pred             CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                       ...|+|+- .+.+.+  +.+.++++++.+.++|+.+|...+
T Consensus        82 -~~adlViE-av~E~l--~~K~~lf~~l~~~~~~~~IiaSnT  119 (186)
T d1wdka3          82 -GNVDLVVE-AVVENP--KVKQAVLAEVENHVREDAILASNT  119 (186)
T ss_dssp             -GGCSEEEE-CCCSCH--HHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             -cccceeee-eecchH--HHHHHHHHHHHhhcCCCeeEEecc
Confidence             35688873 344444  677889999999999998876544

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.82  E-value=0.83  Score=33.52  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             CCCCcEEEecCCCch---HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (231)
Q Consensus       107 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD  176 (231)
                      +.++++|--|++.|.   .+..|++.|++|+.+|.+++.++...+   .    ..+.....|+....       .-...|
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~---~----~~~~~~~~d~~~~~~~~~~~~~~~~id   76 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK---Y----PGIQTRVLDVTKKKQIDQFANEVERLD   76 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG---S----TTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh---c----cCCceeeeeccccccccccccccccce
Confidence            567889998987763   466667799999999999876554322   1    23667777765510       124688


Q ss_pred             EEEeCCc
Q 026903          177 LIFDYTF  183 (231)
Q Consensus       177 ~i~~~~~  183 (231)
                      .++.+..
T Consensus        77 ~lVn~ag   83 (245)
T d2ag5a1          77 VLFNVAG   83 (245)
T ss_dssp             EEEECCC
T ss_pred             eEEeccc
Confidence            8887644

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.45  E-value=4.6  Score=26.55  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             cEEEecCCC-chHHHH-hcC--CCCeEEEEeCChHHHHHH-HHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903          111 RALVPGCGT-GYDVVA-MAS--PERYVVGLEISDIAIKKA-EELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (231)
Q Consensus       111 ~vLDiGcG~-G~~~~~-l~~--~~~~v~~iD~s~~~i~~a-~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~  185 (231)
                      +|--+|+|. |..... ++.  ...+++.+|++++.++.- .+.........+..+..+|..+.   ...|+|+......
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~---~~adivvitag~~   78 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADL---KGSDVVIVAAGVP   78 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGG---TTCSEEEECCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHh---cCCCEEEEecccc
Confidence            566678765 433222 222  345899999998765432 22111111122345555554443   2468888765433


Q ss_pred             ccChHH-----------HHHHHHHHHhhcCCCcEEEEEEcc
Q 026903          186 AIEPEM-----------RAAWAQKIKDFLKPDGELITLMFP  215 (231)
Q Consensus       186 ~~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~~~  215 (231)
                      .-+...           ...+.+.+. ...|++++++.+-+
T Consensus        79 ~~~g~~r~dl~~~N~~I~~~i~~~i~-~~~p~aivivvtNP  118 (140)
T d1a5za1          79 QKPGETRLQLLGRNARVMKEIARNVS-KYAPDSIVIVVTNP  118 (140)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHH-HHCTTCEEEECSSS
T ss_pred             cCCCcchhhhhccccchHHHHHHHHH-hcCCCcEEEEeCCc
Confidence            322111           122333333 33789988876543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.09  E-value=2.1  Score=32.88  Aligned_cols=77  Identities=13%  Similarity=0.093  Sum_probs=40.6

Q ss_pred             CcEEEecCCCchHH----HHhcCCCCeEEEEeCChHHHHHH--HHHhc-cCCCCCceEEEEccCCCCC------CCCcee
Q 026903          110 GRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKA--EELSS-SLPNAKFVSFLKADFFTWC------PTELFD  176 (231)
Q Consensus       110 ~~vLDiGcG~G~~~----~~l~~~~~~v~~iD~s~~~i~~a--~~~~~-~~~~~~~i~~~~~d~~~~~------~~~~fD  176 (231)
                      ++||-.| |+|..+    ..|++.|..|+++|..+......  ..... ......++.|+.+|+.+..      ....+|
T Consensus         2 K~vLITG-atGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITG-VTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            3566666 457555    44455899999999754322211  11111 1112357999999998822      123679


Q ss_pred             EEEeCCccccc
Q 026903          177 LIFDYTFFCAI  187 (231)
Q Consensus       177 ~i~~~~~~~~~  187 (231)
                      .|+......+.
T Consensus        81 ~v~h~aa~~~~   91 (357)
T d1db3a_          81 EVYNLGAMSHV   91 (357)
T ss_dssp             EEEECCCCCTT
T ss_pred             EEEEeeccccc
Confidence            99877655443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=81.08  E-value=3.4  Score=27.44  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=47.7

Q ss_pred             cEEEecCCC-ch-HHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903          111 RALVPGCGT-GY-DVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (231)
Q Consensus       111 ~vLDiGcG~-G~-~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~  187 (231)
                      +|.=||||. |. .+..|.+.+ .+++.+|.+++.++...+...       +... .+..+.   ...|+|+..     +
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~-------~~~~-~~~~~v---~~~Div~la-----v   65 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG-------VETS-ATLPEL---HSDDVLILA-----V   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTC-------CEEE-SSCCCC---CTTSEEEEC-----S
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcc-------cccc-cccccc---cccceEEEe-----c
Confidence            567788876 33 333344444 799999999988877666431       3222 222222   246888832     3


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903          188 EPEMRAAWAQKIKDFLKPDGELITLM  213 (231)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (231)
                      .|++    +..+.+-+++.+.+++..
T Consensus        66 kP~~----~~~v~~~l~~~~~~viS~   87 (152)
T d1yqga2          66 KPQD----MEAACKNIRTNGALVLSV   87 (152)
T ss_dssp             CHHH----HHHHHTTCCCTTCEEEEC
T ss_pred             CHHH----HHHhHHHHhhcccEEeec
Confidence            3444    334445556666666544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=80.86  E-value=9.3  Score=28.66  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=45.6

Q ss_pred             CCcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C-CCceeEEEe
Q 026903          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P-TELFDLIFD  180 (231)
Q Consensus       109 ~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~-~~~fD~i~~  180 (231)
                      +++||-.|+. |..+..++    +.|+.|+++..+.......++............++.+|+.+..   . -...|.|+.
T Consensus        11 gk~VlVTG~s-GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          11 GSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             cCEEEEECCC-CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            4788888865 76665544    4899999998887666655443322222234556778887721   1 135777775


Q ss_pred             CCc
Q 026903          181 YTF  183 (231)
Q Consensus       181 ~~~  183 (231)
                      ...
T Consensus        90 ~a~   92 (342)
T d1y1pa1          90 IAS   92 (342)
T ss_dssp             CCC
T ss_pred             hcc
Confidence            543