Citrus Sinensis ID: 026930

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT
Secondary Structure (PSIPRED)
ccEEEEEEEccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccEEEEEEcccHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccccccccccccHHHHHcccccccEEEcHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHcccccHEEEEEHHHccccccHHHccHcEEEcccccEEEEccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEHHHccccEEEEEEccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGYAVIFLYrrgtcepycsslpddafLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSsrslgpcsMFYLAAAVSdfyvpwksmaehkiqsgsgpldmqlLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNngkipvyrdktssdsdvekPLTKLLVDRhsvyikdsnt
Flexible Loop (DISEMBL)
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVanellsrkeqvvvvtnngkipvyrdktssdsdvekpltkllvdrhsvyikdsnt
Low Complexity Region (SEG)
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT
Disordered region (IsUnstruct)
**YAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVY****************LLVDR**V*******
Disordered Region (DISOPRED)
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY*********************LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK************DVEKPLTKLLVDRHS*YI*****
Disordered Region (DISEMBL)
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYR*********EKPLTKLLVDRHSVYIKDSNT
Disordered Region (DISPRO)
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q8GXR5	317	Phosphopantothenate--cyst	yes	no	0.995	0.722	0.681	3e-83
Q9LZM3	309	Phosphopantothenate--cyst	no	no	0.995	0.741	0.668	3e-83
Q9HAB8	311	Phosphopantothenate--cyst	yes	no	0.991	0.733	0.404	4e-42
Q8VDG5	311	Phosphopantothenate--cyst	yes	no	0.991	0.733	0.382	2e-34
Q9USK7	316	Uncharacterized protein C	yes	no	0.830	0.604	0.410	7e-32
P40506	365	Phosphopantothenate--cyst	yes	no	0.965	0.608	0.332	4e-25

>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana GN=PPCS1 PE=2 SV=1

 Score =  308 bits (788), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYRRGTC+PYC  LPDD FLECFE  +   +QV   +S AVK A+ D  AAVA 
Sbjct: 89  GYAVIFLYRRGTCQPYCRYLPDDPFLECFEFPDAKNIQVHGSHSGAVKMAVMDQQAAVAE 148

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLKLPF+TI+EYLQML++IA   + +GPCSMFYLAAAVSDFYVPW SM EHKI+SGSG
Sbjct: 149 GRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEHKIESGSG 208

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLD++L QVPKMLS+LR  WAP AFCISFKLETD++ILLEKA  A +KY +HAVVANELL
Sbjct: 209 PLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHAVVANELL 268

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 230
           +RKE+VVVV+++G + V RD    +S VE  L +LLVDRHS YIK+S T
Sbjct: 269 TRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT 317

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 5

>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana GN=PPCS2 PE=2 SV=2

 Score =  307 bits (787), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/229 (66%), Positives = 188/229 (82%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYRRGTC+PYC SLPDD FLECFE ++++ +QV   + EAVK A+ D   AVA 
Sbjct: 81  GYAVIFLYRRGTCQPYCRSLPDDPFLECFEFSDKTNIQVHTSHLEAVKMAVMDQQTAVAE 140

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAVSDFYVPWKSM EHKI+SGSG
Sbjct: 141 GSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAVSDFYVPWKSMTEHKIESGSG 200

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLD++L QVPKMLSVLR  WAP AFCISFKLETD++IL+EKA  A +KY +HAVVANEL 
Sbjct: 201 PLDIRLAQVPKMLSVLRSNWAPKAFCISFKLETDSKILMEKATKALRKYKVHAVVANELS 260

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 230
           +RKE+VVVV+++G + V R+    +S VE  L +L+VDRHS YIK+S+ 
Sbjct: 261 TRKEEVVVVSSSGNVVVRRECDKPESFVEDNLIRLIVDRHSTYIKESHN 309

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 131/235 (55%), Gaps = 7/235 (2%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHH 56
           GY V+FLYR  +  PY    P   +L     +  +   +    +E         A+R + 
Sbjct: 77  GYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQ 136

Query: 57  AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
            A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKI
Sbjct: 137 EAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKI 196

Query: 117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
           QS  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + Y    VV
Sbjct: 197 QSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVV 256

Query: 177 ANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           AN L SR+  V +VT +   K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct: 257 ANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 311

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 130/235 (55%), Gaps = 7/235 (2%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDHH 56
           GY V+FLYR  +  PY    P  A+L     +  +     +++  +        A++ + 
Sbjct: 77  GYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQ 136

Query: 57  AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
            A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P   M EHKI
Sbjct: 137 EAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKI 196

Query: 117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
            S  GPL + +  VPKMLS L K+WAP AF +SFKLETD +I++ +A  A + Y    VV
Sbjct: 197 HSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVV 256

Query: 177 ANELLSRKEQVVVVTNNGKIPVYRDKTSSDSD--VEKPLTKLLVDRHSVYIKDSN 229
           AN L S K  V++VT + +  +   +        +E+ +   L  RH+ +I D N
Sbjct: 257 ANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICDKN 311

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1

 Score =  137 bits (344), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 2   GYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAV 59
           GY+VIFLYR  +  P+      P     E    ++E    V Q +   V  A+ +     
Sbjct: 80  GYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYT 139

Query: 60  AGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG 119
               L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSG
Sbjct: 140 KHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSG 199

Query: 120 SGP--LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVA 177
           SG   L++++  VPK L  L   WAP A  ISFKLETD  IL++KA +A ++Y    V+A
Sbjct: 200 SGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIA 259

Query: 178 NELLSRKEQVVVVTN 192
           N L +RK  V  VT+
Sbjct: 260 NLLSTRKRSVAFVTS 274

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1 SV=2

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 31/253 (12%)

Query: 2   GYAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQVCQPYSEAV--KRAIRDHH 56
           GY+VIFL+R  +  PY  S     +  FL+  +    S  ++   ++E V   + + D +
Sbjct: 115 GYSVIFLHREFSLTPYNRSFSHSINTLFLDYID----SEGKIKPEFAENVLKNKKLYDKY 170

Query: 57  AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
                 LLL LPFTT+ +YL  L+ IA    + G C +FYLAAAVSDF+VP+  + +HKI
Sbjct: 171 MEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKI 227

Query: 117 QSGS-------------------GPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAE 157
           QSG                    G L + L  VPK L  L + WA  A  +SFKLETD  
Sbjct: 228 QSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDES 287

Query: 158 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL 217
           +LL K   A  +Y    V+ N L +R +QV+ V+   +   +         +E+ +   +
Sbjct: 288 MLLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHSIEEMIIPEV 347

Query: 218 VDRHSVYIKDSNT 230
           + RH  ++  S T
Sbjct: 348 IARHDKWVAHSKT 360

Catalyzes the first step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
255545580	277	cornichon, putative [Ricinus communis] g	0.991	0.823	0.771	1e-101
224084776	325	predicted protein [Populus trichocarpa]	0.991	0.701	0.75	1e-96
224063167	327	predicted protein [Populus trichocarpa]	0.991	0.697	0.741	1e-96
147766524	329	hypothetical protein VITISV_039485 [Viti	0.978	0.683	0.728	1e-92
302141894	363	unnamed protein product [Vitis vinifera]	0.978	0.619	0.724	4e-92
359492425	329	PREDICTED: phosphopantothenate--cysteine	0.978	0.683	0.724	6e-92
356515833	326	PREDICTED: phosphopantothenate--cysteine	0.991	0.699	0.701	5e-91
449458083	332	PREDICTED: phosphopantothenate--cysteine	0.982	0.680	0.703	7e-91
358248488	320	uncharacterized protein LOC100777777 [Gl	0.991	0.712	0.707	3e-90
357477655	321	Phosphopantothenate-cysteine ligase [Med	0.991	0.710	0.684	6e-88

>gi|255545580|ref|XP_002513850.1| cornichon, putative [Ricinus communis] gi|223546936|gb|EEF48433.1| cornichon, putative [Ricinus communis]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 198/228 (86%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYRRGTC+PYC SLP+D  LECF+    S +QV Q Y EAVKRAI DHHAAV G
Sbjct: 49  GYAVIFLYRRGTCQPYCQSLPEDPLLECFDSINGSDIQVRQSYFEAVKRAINDHHAAVRG 108

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLKLPFTTIFEYLQ+LQMIA+S ++LGP +MFYLAAAVSDFYVPWK MAEHKIQS SG
Sbjct: 109 GHLLKLPFTTIFEYLQILQMIAMSMKNLGPHTMFYLAAAVSDFYVPWKDMAEHKIQSASG 168

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLSV RKEWAPMAFCISFKLETD++ILLEKADMA KKY MH V+ANELL
Sbjct: 169 PLDMRLVQVPKMLSVFRKEWAPMAFCISFKLETDSKILLEKADMALKKYKMHVVIANELL 228

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           +RKE+V+VVT   KIPV+RDKT  DSDVEKPL +LLV++HS YI DS+
Sbjct: 229 TRKEEVIVVTAEQKIPVHRDKTQPDSDVEKPLVELLVEKHSAYITDSD 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084776|ref|XP_002307404.1| predicted protein [Populus trichocarpa] gi|222856853|gb|EEE94400.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 200/228 (87%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYRRGT +PYC SLP+D+ LECFE +++SA+QV QPY+EAVKRAI DHHAAVAG
Sbjct: 97  GYAVIFLYRRGTFQPYCRSLPEDSLLECFECSDDSAIQVRQPYAEAVKRAISDHHAAVAG 156

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLK+PFTTIFEYLQ+L+ IA+S R LG  +++YLAAAVSDFYVPWKSMAEHKIQS SG
Sbjct: 157 GHLLKIPFTTIFEYLQILRSIAMSMRDLGSHAVYYLAAAVSDFYVPWKSMAEHKIQSASG 216

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLS L+K WAPMAFCISFKLETD++ILLEKA+MA KK+ MH VVANEL 
Sbjct: 217 PLDMRLVQVPKMLSALKKAWAPMAFCISFKLETDSKILLEKAEMALKKHRMHMVVANELS 276

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           +RKE+V VVT N KI V RDKT SDSDVE+PL +L+V RHS Y+KDS+
Sbjct: 277 TRKEEVTVVTGNEKILVCRDKTQSDSDVEEPLIELIVGRHSAYVKDSD 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063167|ref|XP_002301023.1| predicted protein [Populus trichocarpa] gi|222842749|gb|EEE80296.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/228 (74%), Positives = 198/228 (86%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYRRGT +PYC SLP+D  LECFE +++S +QV QP++EAVKRA+ DHHAA+AG
Sbjct: 99  GYAVIFLYRRGTFQPYCQSLPEDPLLECFECSDDSTIQVRQPHTEAVKRAVSDHHAAIAG 158

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLKL FTTIFEYLQ+LQ IA+S + LG  ++FYLAAAVSDFYVPWKSMAEHKIQS SG
Sbjct: 159 GHLLKLSFTTIFEYLQILQSIAMSMKDLGSLAVFYLAAAVSDFYVPWKSMAEHKIQSASG 218

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLS L+KEWAPMAFCISFKLETD++ILLEKA+MA KKY MH VVANEL 
Sbjct: 219 PLDMRLVQVPKMLSALKKEWAPMAFCISFKLETDSKILLEKAEMALKKYRMHMVVANELS 278

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           +RKE+V VVT N KI V RDKT +DSDVE+PL +L+V RHS Y+KDS+
Sbjct: 279 TRKEEVTVVTGNEKILVCRDKTQADSDVEEPLIELIVGRHSAYVKDSD 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766524|emb|CAN76608.1| hypothetical protein VITISV_039485 [Vitis vinifera]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/225 (72%), Positives = 190/225 (84%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GY VIFLYRRG+C+PYC SLPDD FLECFE T+ES VQV + + E VK+AI +HHAA+A 
Sbjct: 98  GYGVIFLYRRGSCQPYCRSLPDDPFLECFEFTQESNVQVSESHFEVVKKAISNHHAAIAE 157

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G+LLKLP+TTIFEYLQ+L  IAV  R+LG   MFYLAAAVSDFYVPW SMAEHKIQS SG
Sbjct: 158 GMLLKLPYTTIFEYLQILHKIAVPMRTLGGQGMFYLAAAVSDFYVPWNSMAEHKIQSASG 217

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLS+LRK WAP+AFCISFKLETD+ ILL+KADMA +KY MHAVVANEL 
Sbjct: 218 PLDMRLVQVPKMLSMLRKIWAPLAFCISFKLETDSNILLQKADMALQKYKMHAVVANELS 277

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 226
           +RK++VVVVT+N +I V RDK  +  DVE  L KLLVDRHS+YIK
Sbjct: 278 TRKDEVVVVTSNERISVKRDKAVAGDDVENHLIKLLVDRHSLYIK 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141894|emb|CBI19097.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 189/225 (84%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GY VIFLYRRG+C+PYC  LPDD FLECFE T+ES VQV + + E VK+AI +HHAA+A 
Sbjct: 132 GYGVIFLYRRGSCQPYCRFLPDDPFLECFEFTQESNVQVSESHFEVVKKAISNHHAAIAE 191

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G+LLKLP+TTIFEYLQ+L  IAV  R+LG   MFYLAAAVSDFYVPW SMAEHKIQS SG
Sbjct: 192 GMLLKLPYTTIFEYLQILHKIAVPMRTLGGQGMFYLAAAVSDFYVPWNSMAEHKIQSASG 251

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLS+LRK WAP+AFCISFKLETD+ ILL+KADMA +KY MHAVVANEL 
Sbjct: 252 PLDMRLVQVPKMLSMLRKIWAPLAFCISFKLETDSNILLQKADMALQKYKMHAVVANELS 311

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 226
           +RK++VVVVT+N +I V RDK  +  DVE  L KLLVDRHS+YIK
Sbjct: 312 TRKDEVVVVTSNERISVKRDKAVAGDDVENHLIKLLVDRHSLYIK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492425|ref|XP_002284301.2| PREDICTED: phosphopantothenate--cysteine ligase 1-like [Vitis vinifera]

 Score =  342 bits (877), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 189/225 (84%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GY VIFLYRRG+C+PYC  LPDD FLECFE T+ES VQV + + E VK+AI +HHAA+A 
Sbjct: 98  GYGVIFLYRRGSCQPYCRFLPDDPFLECFEFTQESNVQVSESHFEVVKKAISNHHAAIAE 157

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G+LLKLP+TTIFEYLQ+L  IAV  R+LG   MFYLAAAVSDFYVPW SMAEHKIQS SG
Sbjct: 158 GMLLKLPYTTIFEYLQILHKIAVPMRTLGGQGMFYLAAAVSDFYVPWNSMAEHKIQSASG 217

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLS+LRK WAP+AFCISFKLETD+ ILL+KADMA +KY MHAVVANEL 
Sbjct: 218 PLDMRLVQVPKMLSMLRKIWAPLAFCISFKLETDSNILLQKADMALQKYKMHAVVANELS 277

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 226
           +RK++VVVVT+N +I V RDK  +  DVE  L KLLVDRHS+YIK
Sbjct: 278 TRKDEVVVVTSNERISVKRDKAVAGDDVENHLIKLLVDRHSLYIK 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515833|ref|XP_003526602.1| PREDICTED: phosphopantothenate--cysteine ligase 1-like [Glycine max]

 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 190/228 (83%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GY VIFLYR+ + +P+C SLPDD  LECF+ T+E+ +QVC+ YSEAVKRAI DHH AVAG
Sbjct: 98  GYGVIFLYRKRSFQPFCRSLPDDPLLECFKPTDEANIQVCEAYSEAVKRAIVDHHTAVAG 157

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           GLLLKLPF TIFEYLQMLQ+IA+S R +GP +MFYLAAAVSD+YVPWK M EHKIQSGS 
Sbjct: 158 GLLLKLPFNTIFEYLQMLQIIAMSMRCIGPHAMFYLAAAVSDYYVPWKDMVEHKIQSGSH 217

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
            LD++L+QVPKMLS+LRK+WAP+AFC SFKLETD+ ILL KA  A +KY MHAVVANEL 
Sbjct: 218 LLDVKLVQVPKMLSMLRKDWAPLAFCTSFKLETDSNILLNKAGAALEKYKMHAVVANELA 277

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           SRKEQVVVVT+  K+ V RD + SD+DVE PL KLL ++H+ YI+DS 
Sbjct: 278 SRKEQVVVVTSAEKVTVQRDNSQSDNDVENPLIKLLSEKHATYIEDSG 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458083|ref|XP_004146777.1| PREDICTED: phosphopantothenate--cysteine ligase 1-like [Cucumis sativus] gi|449511568|ref|XP_004163992.1| PREDICTED: phosphopantothenate--cysteine ligase 1-like [Cucumis sativus]

 Score =  338 bits (868), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/226 (70%), Positives = 188/226 (83%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GY+VIFLYR+GT +PYCS LPDD FLEC E T+ES +QV QPYSEAVK AI +HHAA+A 
Sbjct: 96  GYSVIFLYRKGTRQPYCSLLPDDPFLECLEFTQESGIQVRQPYSEAVKNAISEHHAAIAN 155

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLKLPFTTIFEYLQML ++A+S RS+GP ++FYLAAAVSDFYVPW+SMAEHKIQSGSG
Sbjct: 156 GTLLKLPFTTIFEYLQMLHLVAISMRSIGPHALFYLAAAVSDFYVPWESMAEHKIQSGSG 215

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
           PLDM+L+QVPKMLS LR EWAPMA+CISFKLETD +ILLEKA+ A +KY MH V+ANELL
Sbjct: 216 PLDMRLVQVPKMLSRLRSEWAPMAYCISFKLETDVKILLEKANAALRKYKMHMVIANELL 275

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD 227
           +RKE+V +VT N KI V RD       VEK + K +VD+HS Y+ +
Sbjct: 276 TRKEEVTLVTTNEKIHVRRDPKLVGDIVEKHIIKHVVDKHSAYVDN 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248488|ref|NP_001239890.1| uncharacterized protein LOC100777777 [Glycine max] gi|255642574|gb|ACU21550.1| unknown [Glycine max]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 162/229 (70%), Positives = 189/229 (82%), Gaps = 1/229 (0%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYR+ + +P+C SLPDD  LECF+   ES +QVC+ YSE VKRAI DHH AVAG
Sbjct: 91  GYAVIFLYRKRSFQPFCRSLPDDPLLECFKPNHESNIQVCEAYSETVKRAIVDHHTAVAG 150

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           GLLLKLPF TIFEYLQMLQ IA+S R +GP +MFYLAAAVSD+YVPWK M EHKIQSGS 
Sbjct: 151 GLLLKLPFNTIFEYLQMLQTIAMSMRCIGPRAMFYLAAAVSDYYVPWKEMVEHKIQSGSS 210

Query: 122 P-LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANEL 180
             LD++L+QVPKMLSVLRK+WAP+AFCISFKLETD+ ILL KA  A +KY MHAVVANEL
Sbjct: 211 HLLDVKLVQVPKMLSVLRKDWAPLAFCISFKLETDSNILLNKAGAALEKYKMHAVVANEL 270

Query: 181 LSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
            +RKEQVVVVT+  K+ V RDK+ SD+DVE PL KLL ++H+ YI+DS 
Sbjct: 271 STRKEQVVVVTSAEKVTVQRDKSLSDNDVENPLIKLLSEKHATYIEDSG 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477655|ref|XP_003609113.1| Phosphopantothenate-cysteine ligase [Medicago truncatula] gi|355510168|gb|AES91310.1| Phosphopantothenate-cysteine ligase [Medicago truncatula]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 156/228 (68%), Positives = 188/228 (82%)

Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
           GYAVIFLYRRG+ +P+C SLP+D  LECFE T +  +QV + YS+AVK AI DHH AVAG
Sbjct: 93  GYAVIFLYRRGSFQPFCRSLPEDPLLECFEPTNDLNIQVRKDYSKAVKSAIVDHHIAVAG 152

Query: 62  GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
           G LLKLPF+TIFEYLQMLQ+I  S+R +GP +MFYLAAAVSD+YVPWK M EHKIQSGS 
Sbjct: 153 GHLLKLPFSTIFEYLQMLQIIGTSTRCIGPRAMFYLAAAVSDYYVPWKDMVEHKIQSGSH 212

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
            LD++L+QVPKMLSVLRK+WAP+AFC+SFKLETD+ ILL KA+ A ++Y MHAVVANEL 
Sbjct: 213 LLDVKLVQVPKMLSVLRKDWAPLAFCVSFKLETDSSILLNKANAALERYKMHAVVANELS 272

Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           +RKEQV+V T   KI V RD + S +DVEKPL KLL +RH+ YI+DS+
Sbjct: 273 TRKEQVLVTTGVEKITVRRDNSESANDVEKPLIKLLSERHATYIEDSS 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2034690	317	COAB "AT1G12350" [Arabidopsis	0.995	0.722	0.681	7.6e-80
UNIPROTKB|Q9HAB8	311	PPCS "Phosphopantothenate--cys	0.991	0.733	0.408	2.3e-39
ZFIN|ZDB-GENE-060512-104	320	ppcs "phosphopantothenoylcyste	0.973	0.7	0.413	3.4e-38
MGI|MGI:1915237	311	Ppcs "phosphopantothenoylcyste	0.991	0.733	0.391	8.9e-38
UNIPROTKB|G5EH02	439	MGCH7_ch7g472 "Phosphopantothe	0.5	0.261	0.479	6.4e-32
POMBASE|SPCC4B3.18	316	SPCC4B3.18 "phosphopantothenat	0.830	0.604	0.410	3e-30
FB|FBgn0261285	313	Ppcs "Phosphopantothenoylcyste	0.982	0.722	0.329	3.8e-30
SGD|S000001345	365	CAB2 "Probable phosphopantothe	0.495	0.312	0.4	1.1e-25
DICTYBASE|DDB_G0282611	389	DDB_G0282611 "phosphopantothen	0.665	0.393	0.370	1e-21
GENEDB_PFALCIPARUM|PF11_0036	660	PF11_0036 "hypothetical protei	0.443	0.154	0.304	4.8e-06

TAIR|locus:2034690 COAB "AT1G12350" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 156/229 (68%), Positives = 184/229 (80%)

Query:     2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
             GYAVIFLYRRGTC+PYC  LPDD FLECFE  +   +QV   +S AVK A+ D  AAVA 
Sbjct:    89 GYAVIFLYRRGTCQPYCRYLPDDPFLECFEFPDAKNIQVHGSHSGAVKMAVMDQQAAVAE 148

Query:    62 GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
             G LLKLPF+TI+EYLQML++IA   + +GPCSMFYLAAAVSDFYVPW SM EHKI+SGSG
Sbjct:   149 GRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEHKIESGSG 208

Query:   122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
             PLD++L QVPKMLS+LR  WAP AFCISFKLETD++ILLEKA  A +KY +HAVVANELL
Sbjct:   209 PLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHAVVANELL 268

Query:   182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 230
             +RKE+VVVV+++G + V RD    +S VE  L +LLVDRHS YIK+S T
Sbjct:   269 TRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT 317

GO:0003824 "catalytic activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IDA

UNIPROTKB|Q9HAB8 PPCS "Phosphopantothenate--cysteine ligase" [Homo sapiens (taxid:9606)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 96/235 (40%), Positives = 132/235 (56%)

Query:     2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEE--SAVQVCQPYSEAVK---RAIRDHH 56
             GY V+FLYR  +  PY    P   +L     +    S +   +    A+     A+R + 
Sbjct:    77 GYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQ 136

Query:    57 AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
              A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKI
Sbjct:   137 EAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKI 196

Query:   117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
             QS  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + Y    VV
Sbjct:   197 QSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVV 256

Query:   177 ANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
             AN L SR+  V +VT +   K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct:   257 ANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 311

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0009108 "coenzyme biosynthetic process" evidence=TAS

GO:0015939 "pantothenate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-060512-104 ppcs "phosphopantothenoylcysteine synthetase" [Danio rerio (taxid:7955)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 95/230 (41%), Positives = 134/230 (58%)

Query:     2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESA----VQVCQPYSEAVKRAIRDHHA 57
             GYAVIFL+R  +  PY         L+  ++  +      V V +     + + ++ + A
Sbjct:    87 GYAVIFLHRHRSLYPYTRLYTGVNILDSLQLETDKGDTGHVLVNKEALPNIAKVLKRYQA 146

Query:    58 AVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ 117
                 GLLL + F T+ EYL +L+  A +  S+G  +MFYLAAAVSDFY+P   M EHKIQ
Sbjct:   147 VKVSGLLLPVEFNTLSEYLHLLKAAAQALSSIGSKAMFYLAAAVSDFYIPASEMPEHKIQ 206

Query:   118 SGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVA 177
             S +GPL + +  VPKMLS L K+WAP AF ISFKLET+  ILLEKA  A + Y   AVVA
Sbjct:   207 SSNGPLQISMKMVPKMLSPLVKDWAPQAFVISFKLETNPSILLEKARRALETYNHQAVVA 266

Query:   178 NELLSRKEQVVVVTNNGKIPVYR--DKTSSDSDVEKPLTKLLVDRHSVYI 225
             N L +R+  VVVVT + +  +    ++   ++++E  +   L   HS +I
Sbjct:   267 NVLDTRRGYVVVVTKDTQYELLLTDEEVQKEAEIEDKIVTNLTAAHSQFI 316

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1915237 Ppcs "phosphopantothenoylcysteine synthetase" [Mus musculus (taxid:10090)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 92/235 (39%), Positives = 132/235 (56%)

Query:     2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVT--EESAVQVCQPYSEAVK---RAIRDHH 56
             GY V+FLYR  +  PY    P  A+L     +   +S     +    A+     A++ + 
Sbjct:    77 GYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQ 136

Query:    57 AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
              A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P   M EHKI
Sbjct:   137 EAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKI 196

Query:   117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
              S  GPL + +  VPKMLS L K+WAP AF +SFKLETD +I++ +A  A + Y    VV
Sbjct:   197 HSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVV 256

Query:   177 ANELLSRKEQVVVVTNNGKIPVY--RDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
             AN L S K  V++VT + +  +    ++ +    +E+ +   L  RH+ +I D N
Sbjct:   257 ANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICDKN 311

GO:0003674 "molecular_function" evidence=ND

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|G5EH02 MGCH7_ch7g472 "Phosphopantothenate-cysteine ligase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 244 (91.0 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
 Identities = 58/121 (47%), Positives = 75/121 (61%)

Query:     2 GYAVIFLYRRGTCEPYC---SSLPDDAFLECFEVTEESAVQVCQP-YSEAVKRAIRDHHA 57
             GYAVIFL+R+ +  PY    S  P D FL+     EE+   V +P  +E +   +R + A
Sbjct:    95 GYAVIFLHRQFSLLPYSRHYSHTPTDCFLDFLH--EENGAVVAEPGRAEKMLGVLRKYRA 152

Query:    58 AVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ 117
             A  G +LL LPF TI +YL  L+ +A   R LGP  + YLAAAVSDF+VP + MAEHKIQ
Sbjct:   153 AKQGNMLLMLPFVTITDYLYELRAVAQLMRPLGPRGLLYLAAAVSDFFVPPERMAEHKIQ 212

Query:   118 S 118
             S
Sbjct:   213 S 213

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPCC4B3.18 SPCC4B3.18 "phosphopantothenate-cysteine ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 80/195 (41%), Positives = 113/195 (57%)

Query:     2 GYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAV 59
             GY+VIFLYR  +  P+      P     E    ++E    V Q +   V  A+ +     
Sbjct:    80 GYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYT 139

Query:    60 AGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG 119
                 L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSG
Sbjct:   140 KHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSG 199

Query:   120 SGP--LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVA 177
             SG   L++++  VPK L  L   WAP A  ISFKLETD  IL++KA +A ++Y    V+A
Sbjct:   200 SGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIA 259

Query:   178 NELLSRKEQVVVVTN 192
             N L +RK  V  VT+
Sbjct:   260 NLLSTRKRSVAFVTS 274

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISS

FB|FBgn0261285 Ppcs "Phosphopantothenoylcysteine synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 76/231 (32%), Positives = 129/231 (55%)

Query:     3 YAVIFLYRRGTCEPYCSSLPDDAFLECFEVTE--ESAVQVCQPYS-EAVKRAIRDHHAAV 59
             YAVIF++R  + EP+        F +  ++ +  +S+    +P S +     +  +  A 
Sbjct:    79 YAVIFMHRHKSLEPFTRHFTGQQFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIAR 138

Query:    60 AGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG 119
                ++L + FT++ +Y+ +L+       +    ++ YLAAAVSDFY+P   M  HK+QSG
Sbjct:   139 ETQMILYVNFTSVVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSG 198

Query:   120 SGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANE 179
              G   + L  VPKML+ L   W P AF +SFKLETD  +L+ KA  +  KY    V+AN 
Sbjct:   199 DGAPTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYKHKLVIANV 258

Query:   180 LLSRKEQVVVVT--NNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDS 228
             L +RK +VV VT  ++ ++ + R++T    ++E+P+   +V +H  +I ++
Sbjct:   259 LQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQKHGEFISNA 309

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0070328 "triglyceride homeostasis" evidence=IMP

GO:0007297 "ovarian follicle cell migration" evidence=IMP

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=ISA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISA

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

SGD|S000001345 CAB2 "Probable phosphopantothenoylcysteine synthetase (PPCS)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 173 (66.0 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 48/120 (40%), Positives = 69/120 (57%)

Query:     2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAV--KRAIRDHHAAV 59
             GY+VIFL+R  +  PY  S    +    F    +S  ++   ++E V   + + D +   
Sbjct:   115 GYSVIFLHREFSLTPYNRSF-SHSINTLFLDYIDSEGKIKPEFAENVLKNKKLYDKYMEK 173

Query:    60 AGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG 119
                LLL LPFTT+ +YL  L+ IA    + G C +FYLAAAVSDF+VP+  + +HKIQSG
Sbjct:   174 EEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKIQSG 230

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=IEA;ISS

DICTYBASE|DDB_G0282611 DDB_G0282611 "phosphopantothenatecysteine ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 227 (85.0 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 57/154 (37%), Positives = 81/154 (52%)

Query:    62 GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
             G L ++ F T+ EYL +L+ I+     L    + Y AAAVSDFY+P   MA+HKIQS + 
Sbjct:   174 GSLERVNFETVGEYLYLLKNISTELSILKSNLIVYAAAAVSDFYIPLDMMAQHKIQSKNQ 233

Query:   122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
              L + L  VPKM+  L   W P ++ ++FKLETD  IL EK   +   Y    V+ N L 
Sbjct:   234 SLTITLDPVPKMIKFLVDNWCPNSYIVTFKLETDQTILNEKCLASLSNYNHQLVIGNLLS 293

Query:   182 SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLT 214
               +  V+      K I V R+ T      ++ L+
Sbjct:   294 DYRNWVIFHQQQSKPIIVKRELTQFQIQQQQKLS 327

GO:0005575 "cellular_component" evidence=ND

GO:0015937 "coenzyme A biosynthetic process" evidence=ISS

GO:0004632 "phosphopantothenate--cysteine ligase activity" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GENEDB_PFALCIPARUM|PF11_0036 PF11_0036 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 130 (50.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
 Identities = 32/105 (30%), Positives = 53/105 (50%)

Query:    85 SSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPM 144
             S   L P  +  L AA SDFY+P+  + + KI S + P  +++   PK   +  K +  +
Sbjct:   526 SDEFLFPSHLMILCAAASDFYIPFDDLLDFKIDSNNCPFQIEMYLTPKFYKITYKYFPFL 585

Query:   145 AFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVV 189
               CI FKLE    +L++K++   +   M  ++AN L  R   V +
Sbjct:   586 KHCI-FKLEDQDNVLIKKSNERLEHADM--LIANILTQRNMFVYI 627

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXR5	PPCS1_ARATH	6, ., 3, ., 2, ., 5	0.6812	0.9956	0.7223	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.921
3rd Layer	6.3.2.5	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000897 hypothetical protein (325 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam04127	184	pfam04127, DFP, DNA / pantothenate metabolism flav	4e-12
PRK05579	399	PRK05579, PRK05579, bifunctional phosphopantotheno	2e-11
TIGR00521	390	TIGR00521, coaBC_dfp, phosphopantothenoylcysteine	1e-08
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	5e-08
PRK09620	229	PRK09620, PRK09620, hypothetical protein; Provisio	0.003

>gnl|CDD|217913 pfam04127, DFP, DNA / pantothenate metabolism flavoprotein

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 76  LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLS 135
            +ML+  AV         +  +AAAV+D+      +AE KI+     L ++L++ P +L+
Sbjct: 70  EEMLE--AVLEA-FPDADIIIMAAAVADYRP--AEVAEGKIKKEDDELTLELVKNPDILA 124

Query: 136 VLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANEL 180
            L K   P  F + F  ET+   LLE A    ++ G+  +VAN++
Sbjct: 125 ELGKLKKPGQFLVGFAAETEN--LLENARAKLERKGLDLIVANDV 167

The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism. Length = 184

>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 79  LQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLR 138
            +M+     +L    +F +AAAV+D+     ++AE KI+ G G L ++L+  P +L+ + 
Sbjct: 255 QEMLDAVLAALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEVA 312

Query: 139 KEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANEL 180
                  F + F  ET    +LE A    K+ G+  +VAN++
Sbjct: 313 ALKDKRPFVVGFAAETG--DVLEYARAKLKRKGLDLIVANDV 352

Length = 399

>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 12/142 (8%)

Query: 64  LLKLPFTTIFEYLQMLQMIAVSSRSLGP-CSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP 122
           LL  P     +     +M+  +   L     +F  AAAV+DF    K++ E KI+     
Sbjct: 237 LLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKP--KTVFEGKIKKQGEE 294

Query: 123 LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL- 181
           L ++L++ P +++ +RK        + FK ET+ + L++ A    KK  +  +VAN++  
Sbjct: 295 LSLKLVKNPDIIAEVRKIK-KHQVIVGFKAETNDD-LIKYAKEKLKKKNLDMIVANDVSQ 352

Query: 182 ----SRKEQVVVVTNNG--KIP 197
               S + +V + + +G  ++P
Sbjct: 353 RGFGSDENEVYIFSKHGHKELP 374

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 390

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 16/182 (8%)

Query: 47  AVKRAIRDHHAAV---AGGLLLKLPFT-TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVS 102
           A+  A +   A+V   +G   LK+P    + +     +M+     +  P  +F  AAAV+
Sbjct: 214 ALAAAAKRRGASVTLVSGPTSLKIPAGVEVVKVESAEEMLNAVLEAALPADIFISAAAVA 273

Query: 103 DFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEK 162
           D+   W   AE KI+    P  ++L+  P +L+ + +++      + F  ET    ++E 
Sbjct: 274 DYRPKWV--AEAKIKKQGEPFKLELVPNPDILASVARDYPKKNILVGFAAETGD--IVEY 329

Query: 163 ADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLT-KLLVDRH 221
           A    ++  +  +VAN+       V  +         R       DVE P   K  +   
Sbjct: 330 AREKLERKNLDLIVAND-------VSEIGFGSDDNEVRIIDKDGEDVELPEMSKEELAER 382

Query: 222 SV 223
            +
Sbjct: 383 IL 384

Length = 392

>gnl|CDD|181997 PRK09620, PRK09620, hypothetical protein; Provisional

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 115 KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETD--AEILLEKADMARKKYGM 172
           KI S   P+ +   + PK+L  + K+W P    + FKLE+D   E L E+A    ++   
Sbjct: 118 KISSDIAPI-IHFQKAPKVLKQI-KQWDPETVLVGFKLESDVNEEELFERAKNRMEEAKA 175

Query: 173 HAVVAN---ELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKL 216
             ++AN    L SR     V+  +GK  +   K  +  ++ K L  L
Sbjct: 176 SVMIANSPHSLYSRGAMHYVIGQDGKGQLCNGKDETAKEIVKRLEVL 222

Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG2728	302	consensus Uncharacterized conserved protein with s	100.0
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	99.98
PRK09620	229	hypothetical protein; Provisional	99.97
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	99.97
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	99.97
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	99.97
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.96
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	99.96
COG0452	392	Dfp Phosphopantothenoylcysteine synthetase/decarbo	99.89

>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]

Probab=100.00  E-value=2.4e-63  Score=430.38  Aligned_cols=226  Identities=45%  Similarity=0.664  Sum_probs=207.5

Q ss_pred             CCeEEEEEecCCCCccccccCCCCcccccccccCC---CceEEcCcchHHHHHHHHHHHHHhhCCcccccccccHHHHHH
Q 026930            1 MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEE---SAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQ   77 (230)
Q Consensus         1 ~gyaVifl~R~~s~~Pf~r~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~i~f~tv~~y~~   77 (230)
                      +||+||||||++|++||+|||++..++++|+.++.   +.|...+...+.+.+++..|+.+...++|+.+||+|+.+|++
T Consensus        72 agYaVIFl~R~~Sl~Py~R~f~~~~~~~~l~~~g~~~~~~i~~~e~~~~vf~~~~~~~k~~~k~~~lL~vpFtT~~~Yl~  151 (302)
T KOG2728|consen   72 AGYAVIFLYRERSLFPYTRHFPGQTWFLFLRPSGSALSGLIEKEENALPVFAEALEKYKYAEKAGTLLYVPFTTLADYLW  151 (302)
T ss_pred             CCceEEEEeeccccccccccCCCchhhhhhccCCcccccceecCchhhHHHHHHHHHHHHHHhhCcEEEEecchHHHHHH
Confidence            69999999999999999999999999999998543   335555666778999999999988899999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEeeccChH
Q 026930           78 MLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAE  157 (230)
Q Consensus        78 ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFklETd~~  157 (230)
                      +|+++|++|+.++++.|+|+||||||||+|+++|++|||+|++++|+|+|.++||+|..|+..|.|++|+||||||||+.
T Consensus       152 ~L~aiae~Ln~~~sramfYLAAAVSDFyVP~~~mpeHKIqSg~~~l~i~l~~VPK~L~~Lv~~WaP~AfiiSFKLETDes  231 (302)
T KOG2728|consen  152 LLRAIAEALNPLGSRAMFYLAAAVSDFYVPESEMPEHKIQSGSGPLQITLKPVPKMLSPLVSDWAPKAFIISFKLETDES  231 (302)
T ss_pred             HHHHHHHHhccccchHHHHHHHHhcccccChhhcchhhcccCCCCceEEeccchHHHHHHHHhhCcceEEEEEEecCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHHHHHHHHhhc
Q 026930          158 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDS  228 (230)
Q Consensus       158 ~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l~~~~~~~i~~~  228 (230)
                      +|+.||+++|++|+|++||||.|++|+.+|++|+++...++....+  ..-|++.|++.+.++|.+||..+
T Consensus       232 iLi~KAr~AL~kY~HqlVIAN~LsTRk~~V~fVt~~~~~~~~l~~~--~~~IE~~ii~~vv~rH~~~I~~a  300 (302)
T KOG2728|consen  232 ILINKARKALEKYKHQLVIANLLSTRKSRVVFVTKNIVQWLELDKA--PGAIEDSIIKLVVSRHKEFIDEA  300 (302)
T ss_pred             HHHHHHHHHHHHhCceeeeeehhhhcceeEEEEecCcceeeecccc--cchhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999876655544332  24599999999999999999854

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=99.98  E-value=1e-32  Score=233.67  Aligned_cols=112  Identities=33%  Similarity=0.479  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccC-CCCCceEEEEcCchHHHHHhhhcCCceEEEEE
Q 026930           72 IFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS-GSGPLDMQLLQVPKMLSVLRKEWAPMAFCISF  150 (230)
Q Consensus        72 v~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks-~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgF  150 (230)
                      +.++.+|++++   .+.++.+|++|||||||||+|  +...++||+| +++.++|+|.+|||||+.|++.|.|++++|||
T Consensus        66 v~sa~em~~~~---~~~~~~~Di~I~aAAVsDf~p--~~~~~~KIkK~~~~~l~l~L~~~pkIL~~l~~~~~~~~~lVGF  140 (185)
T PF04127_consen   66 VESAEEMLEAV---KELLPSADIIIMAAAVSDFRP--EEPAEGKIKKSSGDELTLELKPTPKILAELRKNKKPNQFLVGF  140 (185)
T ss_dssp             -SSHHHHHHHH---HHHGGGGSEEEE-SB--SEEE--SCHHSS-G---TT-CEEEEEEE-GGHGCCHHHHCSTTTEEEEE
T ss_pred             ecchhhhhhhh---ccccCcceeEEEecchhheee--hhccccccccccCcceEEEEEeChHHHHHHHhcccCCcEEEEE
Confidence            44455556666   344567799999999999999  8889999996 44689999999999999998889999999999


Q ss_pred             eeccChHHHHHHHHHHHHHhCCCEEEeecccC-------CceEEEEE
Q 026930          151 KLETDAEILLEKADMARKKYGMHAVVANELLS-------RKEQVVVV  190 (230)
Q Consensus       151 klETd~~~li~~A~~kL~~~~~D~VVaN~l~~-------~~n~v~lv  190 (230)
                      ||||+  +++++|+++|++||||+||||+++.       +.|+|+||
T Consensus       141 kaEt~--~l~~~A~~kl~~k~~D~IVaN~~~~~~~gfg~~~n~~~ii  185 (185)
T PF04127_consen  141 KAETE--ELIENAKEKLERKGADLIVANDLSQRGSGFGSDTNEVTII  185 (185)
T ss_dssp             EEESC--HHHHHHHHHHHHCT-SEEEEEEGCCCTSSSSSSEEEEEE-
T ss_pred             EecCC--cHHHHHHHHhHhhCCCEEEEeCCCcCCCCcCCCceEEEEC
Confidence            99997  4999999999999999999999985       57999886

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK09620 hypothetical protein; Provisional

Probab=99.97  E-value=5.6e-31  Score=229.61  Aligned_cols=143  Identities=26%  Similarity=0.352  Sum_probs=113.9

Q ss_pred             cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCcccc---------ccCccCCCCCceEEEEcCchHHHHH
Q 026930           67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMA---------EHKIQSGSGPLDMQLLQVPKMLSVL  137 (230)
Q Consensus        67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~---------~~KIks~~~~l~L~L~~~PkiL~~l  137 (230)
                      +++.+..++.+.++.+   +.. ...|++||+||||||+|  +...         ++||+|+ +.++|+|++|||||+.+
T Consensus        67 ~~V~s~~d~~~~l~~~---~~~-~~~D~VIH~AAvsD~~~--~~~~~~~~~~~~~~~Ki~~~-~~~~l~L~~~pdIl~~l  139 (229)
T PRK09620         67 HPFEGIIDLQDKMKSI---ITH-EKVDAVIMAAAGSDWVV--DKICDQEGNVLDMNGKISSD-IAPIIHFQKAPKVLKQI  139 (229)
T ss_pred             EEEecHHHHHHHHHHH---hcc-cCCCEEEECccccceec--ccccccccccccccCCCcCC-CCCeEEEEECcHHHHHH
Confidence            3455544544433333   321 35799999999999999  4333         3599885 56899999999999999


Q ss_pred             hhhcCCceEEEEEeeccCh--HHHHHHHHHHHHHhCCCEEEeecccC---CceEEEEEeCCCeeeecCCCCCChHHHHHH
Q 026930          138 RKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELLS---RKEQVVVVTNNGKIPVYRDKTSSDSDVEKP  212 (230)
Q Consensus       138 ~~~~~p~~~vVgFklETd~--~~li~~A~~kL~~~~~D~VVaN~l~~---~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~  212 (230)
                      ++ |.|++++|||||||+.  ++|+++|+++|++|+|||||||+++.   ..++++||++++.. .+.++|   .+||..
T Consensus       140 ~~-~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~~-~~~~~K---~~iA~~  214 (229)
T PRK09620        140 KQ-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGKG-QLCNGK---DETAKE  214 (229)
T ss_pred             Hh-hCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCcc-ccCCCH---HHHHHH
Confidence            85 6788999999999984  67999999999999999999999953   44689999998753 466888   999999


Q ss_pred             HHHHHHHHH
Q 026930          213 LTKLLVDRH  221 (230)
Q Consensus       213 Iv~~l~~~~  221 (230)
                      |++++.++.
T Consensus       215 i~~~i~~~~  223 (229)
T PRK09620        215 IVKRLEVLC  223 (229)
T ss_pred             HHHHHHHhh
Confidence            999997754

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=99.97  E-value=4e-30  Score=223.93  Aligned_cols=139  Identities=22%  Similarity=0.287  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCc------------------cccccCccCCCCCceEEEEcCchHH
Q 026930           73 FEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK------------------SMAEHKIQSGSGPLDMQLLQVPKML  134 (230)
Q Consensus        73 ~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~------------------~~~~~KIks~~~~l~L~L~~~PkiL  134 (230)
                      .+..+|.+.+   .+.++..|++||+|||+||.+...                  .++++||+|+++.++|+|.+|||||
T Consensus        66 ~s~~~m~~~l---~~~~~~~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Ki~~~~~~~~l~l~~~p~il  142 (229)
T PRK06732         66 ENVDDLLETL---EPLVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFLTKQNTEAKISSASDYQVLFLKKTPKVI  142 (229)
T ss_pred             ecHHHHHHHH---HHHhcCCCEEEeCCccCCceehhhhhhhhhhhhhhhhhhhccccccCCccCCCCceEEEEEEChHHH
Confidence            3444555555   333467899999999999987221                  1258999998777999999999999


Q ss_pred             HHHhhhcCCceEEEEEeeccC--hHHHHHHHHHHHHHhCCCEEEeecccC---CceEEEEEeCCCeeeecCCCCCChHHH
Q 026930          135 SVLRKEWAPMAFCISFKLETD--AEILLEKADMARKKYGMHAVVANELLS---RKEQVVVVTNNGKIPVYRDKTSSDSDV  209 (230)
Q Consensus       135 ~~l~~~~~p~~~vVgFklETd--~~~li~~A~~kL~~~~~D~VVaN~l~~---~~n~v~lv~~~~~~~i~~~~K~~~~eI  209 (230)
                      +.+++ |.|++++|||||||+  .++|+++|+++|++|||||||||+++.   +.|+++|+++++.  .+.++|   .+|
T Consensus       143 ~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~--~~~~~K---~~~  216 (229)
T PRK06732        143 SYVKK-WNPNITLVGFKLLVNVSKEELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEV--YTAQTK---EEI  216 (229)
T ss_pred             HHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCe--eeCCCH---HHH
Confidence            99985 779999999999997  467999999999999999999999964   7899999999985  466888   999


Q ss_pred             HHHHHHHHHHH
Q 026930          210 EKPLTKLLVDR  220 (230)
Q Consensus       210 a~~Iv~~l~~~  220 (230)
                      |+.|++++.+.
T Consensus       217 a~~i~~~~~~~  227 (229)
T PRK06732        217 ADLLLERIEKY  227 (229)
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=99.97  E-value=2.5e-30  Score=245.40  Aligned_cols=142  Identities=23%  Similarity=0.350  Sum_probs=122.1

Q ss_pred             ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCC-CCceEEEEcCchHHHHHhhhc-CCce
Q 026930           68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS-GPLDMQLLQVPKMLSVLRKEW-APMA  145 (230)
Q Consensus        68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~-~~l~L~L~~~PkiL~~l~~~~-~p~~  145 (230)
                      .+..|++..+|++++   .+.++ +|++|||||||||+|  .+..++||||++ +.++|+|++|||||+.|++.. .+.+
T Consensus       315 ~~i~V~ta~eM~~av---~~~~~-~Di~I~aAAVaDyrp--~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l~~~~~~~~~  388 (475)
T PRK13982        315 KVIHVESARQMLAAV---EAALP-ADIAIFAAAVADWRV--ATEGGQKLKKGAAGPPPLQLVENPDILATISKLAENRPP  388 (475)
T ss_pred             eEEEecCHHHHHHHH---HhhCC-CCEEEEeccccceee--ccccccccCcCCCCCceeeeeeCcHHHHHHhhhcccCCC
Confidence            346788999999999   44454 799999999999999  778899999864 457999999999999999632 2236


Q ss_pred             EEEEEeeccChHHHHHHHHHHHHHhCCCEEEeeccc-------CCceEEEEEeCCCe----eeecCCCCCChHHHHHHHH
Q 026930          146 FCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGK----IPVYRDKTSSDSDVEKPLT  214 (230)
Q Consensus       146 ~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~-------~~~n~v~lv~~~~~----~~i~~~~K~~~~eIa~~Iv  214 (230)
                      ++|||||||++  ++++|++||++|||||||||+++       ++.|+|+|++++|.    +.++.++|   .+||+.|+
T Consensus       389 ~lVGFaaEt~~--l~~~A~~KL~~K~~D~IvaN~v~~~~~gfg~d~n~v~ii~~~g~~~~~~~~~~~sK---~~iA~~Il  463 (475)
T PRK13982        389 LVIGFAAETEH--LIDNARAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLSRDGDAEKVESWPVMTK---DEVATALV  463 (475)
T ss_pred             EEEEEccCchh--HHHHHHHHHHHcCCCEEEEccCCcCCCCcCCCccEEEEEECCCCccceeEcCCCCH---HHHHHHHH
Confidence            99999999976  99999999999999999999995       37899999999872    57788899   99999999


Q ss_pred             HHHHHH
Q 026930          215 KLLVDR  220 (230)
Q Consensus       215 ~~l~~~  220 (230)
                      |++.+.
T Consensus       464 ~~i~~~  469 (475)
T PRK13982        464 ARIAST  469 (475)
T ss_pred             HHHHHH
Confidence            999754

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=99.97  E-value=1.3e-29  Score=236.14  Aligned_cols=137  Identities=23%  Similarity=0.318  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEe
Q 026930           72 IFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFK  151 (230)
Q Consensus        72 v~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFk  151 (230)
                      |.+..+|++++.+  ...+..|++|+|||||||+|  ....++||+|.+++++|+|.+|||||+.|++.| |++++||||
T Consensus       248 v~~~~~~~~~~~~--~~~~~~D~~i~~Aavsd~~~--~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~-~~~~lvgF~  322 (390)
T TIGR00521       248 VSTAEEMLEAALN--ELAKDFDIFISAAAVADFKP--KTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK-KHQVIVGFK  322 (390)
T ss_pred             eccHHHHHHHHHH--hhcccCCEEEEccccccccc--cccccccccccCCceeEEEEeCcHHHHHHHhhC-CCcEEEEEE
Confidence            4455555555521  23467899999999999999  667899999965679999999999999999765 578999999


Q ss_pred             eccChHHHHHHHHHHHHHhCCCEEEeecccC-----CceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHH
Q 026930          152 LETDAEILLEKADMARKKYGMHAVVANELLS-----RKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL  217 (230)
Q Consensus       152 lETd~~~li~~A~~kL~~~~~D~VVaN~l~~-----~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l  217 (230)
                      |||+.+ ++++|++||++||||+||||+++.     ++|+++||+++|...++.++|   .+||+.|++++
T Consensus       323 aEt~~~-l~~~A~~kl~~k~~D~ivaN~i~~~~fg~~~n~~~li~~~~~~~~~~~~K---~~iA~~i~~~~  389 (390)
T TIGR00521       323 AETNDD-LIKYAKEKLKKKNLDMIVANDVSQRGFGSDENEVYIFSKHGHKELPLMSK---LEVAERILDEI  389 (390)
T ss_pred             cCCCcH-HHHHHHHHHHHcCCCEEEEccCCccccCCCCcEEEEEECCCeEEeCCCCH---HHHHHHHHHHh
Confidence            999866 999999999999999999999974     789999999998778888999   99999999986

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.96  E-value=5.5e-29  Score=216.57  Aligned_cols=143  Identities=20%  Similarity=0.286  Sum_probs=121.4

Q ss_pred             ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCc------------------cccccCccCCCCCceEEEEc
Q 026930           68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK------------------SMAEHKIQSGSGPLDMQLLQ  129 (230)
Q Consensus        68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~------------------~~~~~KIks~~~~l~L~L~~  129 (230)
                      ....+++..+|++.+   .+.++..|++|++|||+||.|...                  +..++||+|+++.++|+|.+
T Consensus        60 Dv~d~~s~~~l~~~v---~~~~g~iDiLVnnAgv~d~~~~~~~s~e~~~~~~~~~~~~~~~~~~~Ki~~~~~~~~l~l~~  136 (227)
T TIGR02114        60 SIREIETTKDLLITL---KELVQEHDILIHSMAVSDYTPVYMTDLEQVQASDNLNEFLSKQNHEAKISSTSEYQVLFLKK  136 (227)
T ss_pred             eeecHHHHHHHHHHH---HHHcCCCCEEEECCEeccccchhhCCHHHHhhhcchhhhhccccccCCcccCCCceeEEEEE
Confidence            455677777888877   566788899999999999987221                  12479999986678999999


Q ss_pred             CchHHHHHhhhcCCceEEEEEeeccC--hHHHHHHHHHHHHHhCCCEEEeeccc---CCceEEEEEeCCCeeeecCCCCC
Q 026930          130 VPKMLSVLRKEWAPMAFCISFKLETD--AEILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTS  204 (230)
Q Consensus       130 ~PkiL~~l~~~~~p~~~vVgFklETd--~~~li~~A~~kL~~~~~D~VVaN~l~---~~~n~v~lv~~~~~~~i~~~~K~  204 (230)
                      |||||+.+++ |.|++++|||||||+  .++|+++|+++|++|||||||||+++   ++.|+++|+++++.  ++..+| 
T Consensus       137 ~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~~~~~~~~~~~~~li~~~~~--~~~~~k-  212 (227)
T TIGR02114       137 TPKVISLVKE-WNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQV--QTAQTK-  212 (227)
T ss_pred             ChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcchhhcCCCCceEEEEeCCCe--eecCCH-
Confidence            9999999995 668899999999986  46799999999999999999999994   58999999999973  566888 


Q ss_pred             ChHHHHHHHHHHHHH
Q 026930          205 SDSDVEKPLTKLLVD  219 (230)
Q Consensus       205 ~~~eIa~~Iv~~l~~  219 (230)
                        .+||..|++++.+
T Consensus       213 --~~ia~~i~~~~~~  225 (227)
T TIGR02114       213 --EEIAELLYEKVQK  225 (227)
T ss_pred             --HHHHHHHHHHHHh
Confidence              9999999999864

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=99.96  E-value=2.8e-29  Score=234.51  Aligned_cols=142  Identities=25%  Similarity=0.399  Sum_probs=122.0

Q ss_pred             ccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEE
Q 026930           70 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCIS  149 (230)
Q Consensus        70 ~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVg  149 (230)
                      ..|.+..+|.+++   .+.++..|++|++|||+||+|  ....++||||+++.++|+|++|||||+.|++.+.+.+++||
T Consensus       249 ~dv~~~~~~~~~v---~~~~~~~DilI~~Aav~d~~~--~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~~~~~~~~VG  323 (399)
T PRK05579        249 IDVESAQEMLDAV---LAALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEVAALKDKRPFVVG  323 (399)
T ss_pred             EccCCHHHHHHHH---HHhcCCCCEEEEccccccccc--ccccccCccCCCCCceEEEEeCcHHHHHHHhccCCCCEEEE
Confidence            3455666677777   445788999999999999999  88899999997557999999999999999976533349999


Q ss_pred             EeeccChHHHHHHHHHHHHHhCCCEEEeeccc------CCceEEEEEeCCCe-eeecCCCCCChHHHHHHHHHHHHHHH
Q 026930          150 FKLETDAEILLEKADMARKKYGMHAVVANELL------SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLTKLLVDRH  221 (230)
Q Consensus       150 FklETd~~~li~~A~~kL~~~~~D~VVaN~l~------~~~n~v~lv~~~~~-~~i~~~~K~~~~eIa~~Iv~~l~~~~  221 (230)
                      |||||++  ++++|++||++|||||||||+++      +++|+++|+++++. ..++.++|   .+||+.|++++.++.
T Consensus       324 FaaEt~~--~~~~A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~~~~~K---~~iA~~i~~~i~~~~  397 (399)
T PRK05579        324 FAAETGD--VLEYARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKLPLMSK---LELARRLLDEIAERL  397 (399)
T ss_pred             EccCCch--HHHHHHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEcCCCCH---HHHHHHHHHHHHHHh
Confidence            9999997  89999999999999999999994      47899999998874 46888899   999999999997654

>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

Probab=99.89  E-value=8.6e-23  Score=190.56  Aligned_cols=143  Identities=20%  Similarity=0.364  Sum_probs=127.8

Q ss_pred             cccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEE
Q 026930           69 FTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCI  148 (230)
Q Consensus        69 f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vV  148 (230)
                      ...+.+..+|.+++   +......|+++++|||+||+|  ...+++||+|..+++.|+|.+|||||..++..+.+..++|
T Consensus       243 ~v~v~sa~em~~av---~~~~~~~d~~i~~aAvaD~~~--~~~~~~Kikk~~~~~~l~l~~n~dil~~~~~~~~~~~~~V  317 (392)
T COG0452         243 VVKVESAEEMLNAV---LEAALPADIFISAAAVADYRP--KWVAEAKIKKQGEPFKLELVPNPDILASVARDYPKKNILV  317 (392)
T ss_pred             eeeeeeHHHHHHHH---HhcccccCEEEEecccccccc--ccccccceeecCCcceEEeccChhHHHHHHhhccCCCeEE
Confidence            44688899999999   455667999999999999999  7789999999777799999999999999998764434899


Q ss_pred             EEeeccChHHHHHHHHHHHHHhCCCEEEeeccc-----CCceEEEEEeCCCe-eeecCCCCCChHHHHHHHHHHHHHHH
Q 026930          149 SFKLETDAEILLEKADMARKKYGMHAVVANELL-----SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLTKLLVDRH  221 (230)
Q Consensus       149 gFklETd~~~li~~A~~kL~~~~~D~VVaN~l~-----~~~n~v~lv~~~~~-~~i~~~~K~~~~eIa~~Iv~~l~~~~  221 (230)
                      ||++||+.  ++++|+++|+++++|+||+|+++     ++.|++++++++|. ..++.++|   .++|+.|++.+.+++
T Consensus       318 gfaaet~~--~~~~a~~kl~~k~~D~i~aNdv~~~~fg~d~n~~~~~~~d~~~~~~~~~~k---~~~a~~i~~~i~~~~  391 (392)
T COG0452         318 GFAAETGD--IVEYAREKLERKNLDLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMSK---EELAERILDEIAELL  391 (392)
T ss_pred             EEeccchH--HHHHHHHhhhhcCCCeEEeccccccCCCCCccceEEecCCCCeeeccccCH---HHHHHHHHHHHHHhh
Confidence            99999999  99999999999999999999998     48999999999775 78899999   999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
1p9o_A	313	Crystal Structure Of Phosphopantothenoylcysteine Sy		1e-42

>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine Synthetase Length = 313

Iteration: 1
 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 7/235 (2%)
Query: 2   GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHH 56
           GY V+FLYR  +  PY    P   +L     +  +   +    +E         A+R + 
Sbjct: 79  GYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQ 138
Query: 57  AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
            A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKI
Sbjct: 139 EAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKI 198
Query: 117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
           +S  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + Y    VV
Sbjct: 199 ESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVV 258
Query: 177 ANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           AN L SR+  V++VT +   K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct: 259 ANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	3e-68
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	5e-09
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	4e-05

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 Length = 313

 Score =  211 bits (538), Expect = 3e-68
 Identities = 93/236 (39%), Positives = 132/236 (55%), Gaps = 7/236 (2%)

Query: 1   MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESA-----VQVCQPYSEAVKRAIRDH 55
            GY V+FLYR  +  PY    P   +L     +  +      ++  +        A+R +
Sbjct: 78  AGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSY 137

Query: 56  HAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHK 115
             A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHK
Sbjct: 138 QEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHK 197

Query: 116 IQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAV 175
           I+S  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + Y    V
Sbjct: 198 IESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVV 257

Query: 176 VANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
           VAN L SR+  V++VT +   K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct: 258 VANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 313

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} Length = 232

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 26/143 (18%)

Query: 80  QMIAVSSRSLGPCSMFYLAAAVSDF------------------YVPWKSMAEHKIQSGSG 121
            ++      +    +   + AVSD+                      K   + KI S   
Sbjct: 73  DLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDE 132

Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEI--LLEKADMARKKYGMHAVVANE 179
              + L + PK++S++ KEW P    I FKL  D     L++ A  +  K     ++AN+
Sbjct: 133 VQVLFLKKTPKIISLV-KEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIAND 191

Query: 180 LLSRKE----QVVVVTNNGKIPV 198
            L++      + + V  N    V
Sbjct: 192 -LTQISADQHRAIFVEKNQLQTV 213

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* Length = 226

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 79  LQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI---QSGSGPLDMQLLQVPKMLS 135
           L+M A  + S+   ++F   AAV+D+     ++A  KI    +    L +++++ P +++
Sbjct: 75  LEMEAAVNASVQQQNIFIGCAAVADYRA--ATVAPEKIKKQATQGDELTIKMVKNPDIVA 132

Query: 136 VLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKE--------QV 187
            +        + + F  ET+      +    RK   +  + AN+ +S+           +
Sbjct: 133 GVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDL--ICAND-VSQPTQGFNSDNNAL 189

Query: 188 VVVTNNGKIP 197
            +   +G   
Sbjct: 190 HLFWQDGDKV 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	100.0
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	100.0
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	100.0

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=100.00  E-value=1.6e-55  Score=397.91  Aligned_cols=227  Identities=40%  Similarity=0.660  Sum_probs=185.0

Q ss_pred             CCeEEEEEecCCCCccccccCCCCcccccccccC---CC--ceEEcCcchHHHHHHHHHHHHHhhCCcccccccccHHHH
Q 026930            1 MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTE---ES--AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEY   75 (230)
Q Consensus         1 ~gyaVifl~R~~s~~Pf~r~~~~~~~~d~~~~~~---~~--~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~i~f~tv~~y   75 (230)
                      +||.|+|+||.+|+.||.||++..+|+++|+.++   +|  .+.+.......|.++++.|++++++++|+.+||+|+.||
T Consensus        78 ~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~ey  157 (313)
T 1p9o_A           78 AGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADY  157 (313)
T ss_dssp             TTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHH
T ss_pred             CCCEEEEEecCCCcCcchhccCccchhhhhccccccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHH
Confidence            6999999999999999999999777888888732   22  456667788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEeeccC
Q 026930           76 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETD  155 (230)
Q Consensus        76 ~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFklETd  155 (230)
                      +++|+.++..++.++.+|++|||||||||+||++.+++|||||++++++|+|++|||||+.|++.|+|++++|||||||+
T Consensus       158 l~~L~~~~~~l~~~~~~di~i~aAAVsDf~~p~~~~~~~KIkk~~~~l~L~L~~~PdIL~~l~~~~~p~~~lVGFkaET~  237 (313)
T 1p9o_A          158 LHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETD  237 (313)
T ss_dssp             HHHHHHHHHHHGGGGGGEEEEECSBCCSEECC--------------CEEEECEECGGGGSCCGGGTCTTSEEEEEECCCC
T ss_pred             HHHHHHhhHHhhccCCCCEEEECCchhhccCCcccccccccccCCCCceEEeecCchHHHHHHhhcCCCcEEEEEEecCC
Confidence            99999999999999999999999999999999989999999997668999999999999999988999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCeeeecCCCCC---ChHHHHHHHHHHHHHHHHHHHhhc
Q 026930          156 AEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTS---SDSDVEKPLTKLLVDRHSVYIKDS  228 (230)
Q Consensus       156 ~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~~~i~~~~K~---~~~eIa~~Iv~~l~~~~~~~i~~~  228 (230)
                      +++|+++|++||++||||+||||++++++|+|+||+++|...++ ++|.   .+.+||+.|+++|.++|.+||.++
T Consensus       238 ~~~l~~~A~~kL~~k~~DlIVaN~l~~~~n~v~li~~~~~~~~~-~sK~~~a~~~eIa~~Iv~~l~~~h~~~i~~~  312 (313)
T 1p9o_A          238 PAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLL-LSEEEIEKGVEIEEKIVDNLQSRHTAFIGDR  312 (313)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEC------CEEEEETTEEEEEC-CCHHHHHTTCCHHHHHHHHHHHHHHHHC---
T ss_pred             ChHHHHHHHHHHHHcCCCEEEEecCcCCccEEEEEECCCcEEcc-CCHHHHccchHHHHHHHHHHHHHHHHHHhcc
Confidence            88899999999999999999999999999999999999866664 6651   124567999999999999999865

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=100.00  E-value=1.1e-36  Score=264.77  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=137.3

Q ss_pred             CCeEEEEEecCCCCccccccCCCCcccccccccCCCceEEcCcchHHHHHHHHHHHHHhhCCcccccccccHHHHHHHHH
Q 026930            1 MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQ   80 (230)
Q Consensus         1 ~gyaVifl~R~~s~~Pf~r~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~i~f~tv~~y~~ml~   80 (230)
                      +||.|+++||..++.|+.   +                                       ..+..++++|+.++.   +
T Consensus        42 ~Ga~V~lv~~~~~~~~~~---~---------------------------------------~~~~~~~v~s~~em~---~   76 (232)
T 2gk4_A           42 AGYEVCLITTKRALKPEP---H---------------------------------------PNLSIREITNTKDLL---I   76 (232)
T ss_dssp             TTCEEEEEECTTSCCCCC---C---------------------------------------TTEEEEECCSHHHHH---H
T ss_pred             CCCEEEEEeCCccccccC---C---------------------------------------CCeEEEEHhHHHHHH---H
Confidence            599999999999887731   1                                       113445666666554   4


Q ss_pred             HHHHHhhhcCCCCeEEEeeeccCcccCCc------------------cccccCccCCCCCceEEEEcCchHHHHHhhhcC
Q 026930           81 MIAVSSRSLGPCSMFYLAAAVSDFYVPWK------------------SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWA  142 (230)
Q Consensus        81 ~~~~~l~~~~~~d~~i~AAAVSDf~~p~~------------------~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~  142 (230)
                      ++   .+.++..|++|+|||||||+|+..                  .+++|||||+++.++|+|++|||||+.|++ |.
T Consensus        77 ~v---~~~~~~~Dili~aAAvsD~~p~~~~~~e~~~~~~~~~~~l~~~~~~~KIkk~~~~l~l~L~~~PdIL~~l~~-~~  152 (232)
T 2gk4_A           77 EM---QERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKE-WN  152 (232)
T ss_dssp             HH---HHHGGGCSEEEECSBCCSEEEEEEEEHHHHHHCSCGGGGGGCCGGGCCCCTTCSEEEEEEEECCCCHHHHHH-HC
T ss_pred             HH---HHhcCCCCEEEEcCccccccchhhcchhhhhccccchhhhcccccccCccCCCCCeeEEEEeChHHHHHHHh-cC
Confidence            44   344678999999999999999430                  057899999866699999999999999996 89


Q ss_pred             CceEEEEEeeccCh--HHHHHHHHHHHHHhCCCEEEeeccc---CCceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHH
Q 026930          143 PMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL  217 (230)
Q Consensus       143 p~~~vVgFklETd~--~~li~~A~~kL~~~~~D~VVaN~l~---~~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l  217 (230)
                      |++++|||||||+.  +.|+++|++||++|||||||||+++   +++|+|+||+++|  .++.++|   .+||+.|+++|
T Consensus       153 p~~~lVGFaaEt~~~~~~l~~~A~~kL~~k~~D~IvaN~v~~f~~~~n~v~li~~~~--~~~~~sK---~eiA~~I~~~i  227 (232)
T 2gk4_A          153 PTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQISADQHRAIFVEKNQ--LQTVQTK---EEIAELLLEKI  227 (232)
T ss_dssp             TTSEEEEEEEESSCCHHHHHHHHHHHHHHHTCSEEEEEEGGGBCSSCBCEEEECSSC--EEEESSH---HHHHHHHHHHH
T ss_pred             CCcEEEEEEeccCCchhHHHHHHHHHHHHhCCCEEEEecccccCcCceEEEEEECCC--cccCCCH---HHHHHHHHHHH
Confidence            99999999999983  5699999999999999999999998   5899999999998  5788899   99999999998


Q ss_pred             HH
Q 026930          218 VD  219 (230)
Q Consensus       218 ~~  219 (230)
                      .+
T Consensus       228 ~~  229 (232)
T 2gk4_A          228 QA  229 (232)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=100.00  E-value=7.3e-33  Score=239.87  Aligned_cols=143  Identities=19%  Similarity=0.278  Sum_probs=122.2

Q ss_pred             cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccC---CCCCceEEEEcCchHHHHHhhhcCC
Q 026930           67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS---GSGPLDMQLLQVPKMLSVLRKEWAP  143 (230)
Q Consensus        67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks---~~~~l~L~L~~~PkiL~~l~~~~~p  143 (230)
                      ++++++   .+|++++   .+.++..|++|++|||+||+|  ...+++||+|   +++.++|+|++|||||+.|++.|.|
T Consensus        69 ~dv~~~---~~~~~~v---~~~~~~~Dili~~Aav~d~~p--~~~~~~KIkk~~~~~~~l~l~L~~~pdIL~~l~~~~~~  140 (226)
T 1u7z_A           69 VDVMTA---LEMEAAV---NASVQQQNIFIGCAAVADYRA--ATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDH  140 (226)
T ss_dssp             EECCSH---HHHHHHH---HHHGGGCSEEEECCBCCSEEE--SSCCSSCC-------CEEEEEEEECCCHHHHHHHCSSS
T ss_pred             EccCcH---HHHHHHH---HHhcCCCCEEEECCcccCCCC--ccCChHHhccccccCCceEEEEeecHHHHHHHHhhhcC
Confidence            345554   4466666   556788999999999999998  6788999999   4446899999999999999987788


Q ss_pred             ceEEEEEeeccChHHHHHHHHHHHHHhCCCEEEeeccc-------CCceEEEEEeCCCeeeecCCCCCChHHHHHHHHHH
Q 026930          144 MAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKL  216 (230)
Q Consensus       144 ~~~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~-------~~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~  216 (230)
                      ++++||||+||++  ++++|+++|++|||||||||+++       +++|+|++++++|...++.++|   .+||+.|++.
T Consensus       141 ~~~~VGFaaEt~~--l~e~A~~kL~~k~~d~ivaN~~~~~~~~f~~~~n~v~li~~~~~~~~~~~sK---~~vA~~I~~~  215 (226)
T 1u7z_A          141 RPYVVGFAAETNN--VEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERK---ELLGQLLLDE  215 (226)
T ss_dssp             CCEEEEEEEESSS--HHHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEEEEEETTEEEEEEEEEH---HHHHHHHHHH
T ss_pred             CcEEEEcchhhch--HHHHHHHHHHhcCCCEEEEeeccccCCccCCCceEEEEEeCCCcEecCCCCH---HHHHHHHHHH
Confidence            8899999999988  99999999999999999999998       4789999999998777888899   9999999999


Q ss_pred             HHHHHH
Q 026930          217 LVDRHS  222 (230)
Q Consensus       217 l~~~~~  222 (230)
                      |.+++.
T Consensus       216 i~~~~~  221 (226)
T 1u7z_A          216 IVTRYD  221 (226)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1p9oa_	290	c.72.3.1 (A:) Phosphopantothenoylcysteine syntheta	1e-47
d1u7za_	223	c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional	7e-05

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 290

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 1e-47
 Identities = 91/232 (39%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 1   MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDH 55
            GY V+FLYR  +  PY    P   +L     +  +     +++  +        A+R +
Sbjct: 59  AGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSY 118

Query: 56  HAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHK 115
             A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHK
Sbjct: 119 QEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHK 178

Query: 116 IQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAV 175
           I+S  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + Y    V
Sbjct: 179 IESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVV 238

Query: 176 VANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYI 225
           VAN L SR+  V++VT +   K+ +  ++     ++E+ +   L  RH+ +I
Sbjct: 239 VANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI 290

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} Length = 223

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 13/183 (7%)

Query: 46  EAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105
            A  R   +         L   PF    + +  L+M A  + S+   ++F   AAV+D+ 
Sbjct: 40  AAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVADYR 99

Query: 106 VPWKSMAEHKIQSGSG-PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKAD 164
               +  + K Q+  G  L +++++ P +++ +        + + F  ET+      +  
Sbjct: 100 AATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQK 159

Query: 165 MARKKYGMHAVVANELL-------SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL 217
             RK   +  + AN++        S    + +   +G   +          + + L   +
Sbjct: 160 RIRK--NLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVL---PLERKELLGQLLLDEI 214

Query: 218 VDR 220
           V R
Sbjct: 215 VTR 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	100.0
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	100.0

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-50  Score=360.87  Aligned_cols=225  Identities=40%  Similarity=0.660  Sum_probs=184.2

Q ss_pred             CCeEEEEEecCCCCccccccCCCCccccccccc---CCCce--EEcCcchHHHHHHHHHHHHHhhCCcccccccccHHHH
Q 026930            1 MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVT---EESAV--QVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEY   75 (230)
Q Consensus         1 ~gyaVifl~R~~s~~Pf~r~~~~~~~~d~~~~~---~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~ll~i~f~tv~~y   75 (230)
                      +||.|+|+|+++|++||.++++...+++.+...   ..+.+  ...++....+.++++.|+++...+++..++|+|+.+|
T Consensus        59 ~Ga~V~li~g~~s~~P~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~~e~  138 (290)
T d1p9oa_          59 AGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADY  138 (290)
T ss_dssp             TTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHH
T ss_pred             cCCEEEEEecCCccCcccccccccchhhhccccccccccceeecchhhHHHHHHHHHHHhhhhcccCCceEEEEeeHHHH
Confidence            699999999999999999999977777777763   23333  3456678899999999999998999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEeeccC
Q 026930           76 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETD  155 (230)
Q Consensus        76 ~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFklETd  155 (230)
                      +++++.+++.++..+.+|++|||||||||+||....+++||+|+++.++|+|++|||||+.|++.|+|++++||||||||
T Consensus       139 ~~~l~~~~~~~~~~~~~d~~i~aAAVsDf~~~~~~~~k~Ki~s~~~~l~l~L~~~PdIL~~l~~~~~p~~~~VGFkaEtd  218 (290)
T d1p9oa_         139 LHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETD  218 (290)
T ss_dssp             HHHHHHHHHHHGGGGGGEEEEECSBCCSEECC--------------CEEEECEECGGGGSCCGGGTCTTSEEEEEECCCC
T ss_pred             HHHHHHHHhhccccccchHHHHHhccchhhccchhhhhhcccccccchhhhhccChHHHHHHHHhhCCCceEEEEEEecC
Confidence            99999999999999999999999999999998888899999998788999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCeeeecCCCC--CChHHHHHHHHHHHHHHHHHHH
Q 026930          156 AEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKT--SSDSDVEKPLTKLLVDRHSVYI  225 (230)
Q Consensus       156 ~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~~~i~~~~K--~~~~eIa~~Iv~~l~~~~~~~i  225 (230)
                      +++|+++|++||.+||||+||||++++++|+|+|++++|...+...+|  ....+||+.|++.|.++|.+||
T Consensus       219 ~e~l~~~A~~kL~~k~~D~IvaN~l~~~~n~v~li~~d~~~~~~~~~~~~~~~~eIa~~Ii~~i~~~~~~~~  290 (290)
T d1p9oa_         219 PAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI  290 (290)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEC------CEEEEETTEEEEECCCHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEecCCCCCcEEEEEeCCCcEEecccChhhhhHHHHHHHHHHHHHHHHHhhC
Confidence            888999999999999999999999999999999999999876654433  0114799999999999999997

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.9e-33  Score=236.26  Aligned_cols=143  Identities=17%  Similarity=0.269  Sum_probs=120.7

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccC--C-CCCceEEEEcCchHHHHHhhhcCCceEE
Q 026930           71 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS--G-SGPLDMQLLQVPKMLSVLRKEWAPMAFC  147 (230)
Q Consensus        71 tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks--~-~~~l~L~L~~~PkiL~~l~~~~~p~~~v  147 (230)
                      .+.++.+|++++   ++.++.+|++||+||||||+|  .....+|+++  . ++.++|+|++|||||+.|++.|.|++++
T Consensus        68 ~~~t~~~m~~~~---~~~~~~~D~~i~aAAvsDf~~--~~~~~~k~Kk~~~~~~~l~L~L~~tpdIL~~l~~~k~~~~~~  142 (223)
T d1u7za_          68 DVMTALEMEAAV---NASVQQQNIFIGCAAVADYRA--ATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYV  142 (223)
T ss_dssp             ECCSHHHHHHHH---HHHGGGCSEEEECCBCCSEEE--SSCCSSCC-------CEEEEEEEECCCHHHHHHHCSSSCCEE
T ss_pred             eehhhHHHHHHH---HhhhccceeEeeeechhhhhh--hhhhhhhcccccccccccceeeecCHHHHHHHHhhccCCceE
Confidence            445666777777   455677899999999999999  5555555543  2 2458999999999999998888888999


Q ss_pred             EEEeeccChHHHHHHHHHHHHHhCCCEEEeecccC-------CceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHHH
Q 026930          148 ISFKLETDAEILLEKADMARKKYGMHAVVANELLS-------RKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDR  220 (230)
Q Consensus       148 VgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~~-------~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l~~~  220 (230)
                      |||||||++  +++.|++||.+||||+||||+++.       +.|+++|++++|.+.++.++|   .+||+.|+++|.++
T Consensus       143 VGFaaEt~~--l~~~A~~Kl~~K~~D~IvAN~v~~~~~~fgsd~n~v~ii~~~~~~~~~~~sK---~~iA~~Il~~I~~~  217 (223)
T d1u7za_         143 VGFAAETNN--VEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERK---ELLGQLLLDEIVTR  217 (223)
T ss_dssp             EEEEEESSS--HHHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEEEEEETTEEEEEEEEEH---HHHHHHHHHHHHHH
T ss_pred             EEEeecccc--hhhHHHHHHHhcCCCEEEeecccCCCCCcCCCceEEEEEECCCeEEcCCCCH---HHHHHHHHHHHHHH
Confidence            999999998  899999999999999999999863       689999999999888888899   99999999999987


Q ss_pred             HHH
Q 026930          221 HSV  223 (230)
Q Consensus       221 ~~~  223 (230)
                      +++
T Consensus       218 ~~~  220 (223)
T d1u7za_         218 YDE  220 (223)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754