Citrus Sinensis ID: 027021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHHV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccEccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEcccccccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTArstkstkqsdgatsatsatarkkscnctcscngpaaASAAEREMLEVGRHAATAATAVVAergsgasmmEQLVPEITTHalsyldypslcrLSMTNSLMRKAANDDNAWKALYHkdftleqdsvipvngWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCihasgelfsgyDSFYLVLGNVAQWHHV
Flexible Loop (DISEMBL)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTArstkstkqsdgatsatsatarkkscnctCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHHV
Low Complexity Region (SEG)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGatsatsataRKKSCNCTCSCNGPAAASAAEREMLEVGRHaataatavvaERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHHV
Disordered region (IsUnstruct)
**IITSTFFSSQFVIAAIFTIFSLLLAVRT***************************CTCS*******************************************PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWH**
Disordered Region (DISOPRED)
*****STFFSSQFVIAAIFTIFSLLLAVRT************************SCNCTCSCNGPAAASAA******************************QLVPEITTHALSYLDYPSLCRLSMTNS******NDDNAWKALYHKDFT**********GWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHHV
Disordered Region (DISEMBL)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRT**************************NCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHHV
Disordered Region (DISPRO)
*EIITSTFFSSQFVIAAIFTIFSLLLAVRTARS*******************************P********************************SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHH*
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWHHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q93YV9	231	F-box protein SKIP8 OS=Ar	yes	no	0.593	0.588	0.779	2e-61
Q9T0B0	122	Probable F-box protein At	no	no	0.502	0.942	0.608	7e-39

>sp|Q93YV9|SKIP8_ARATH F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/136 (77%), Positives = 117/136 (86%)

Query: 79  GRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN 138
           G    T  T+ VA+   G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN
Sbjct: 16  GGERTTVTTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN 75

Query: 139 AWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNAD 198
           AWKALYHKDFTLEQD + PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+D
Sbjct: 76  AWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSD 135

Query: 199 YVKCIHASGELFSGYD 214
           YVKCIHASGELFSGY+
Sbjct: 136 YVKCIHASGELFSGYN 151

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0B0|FB335_ARATH Probable F-box protein At4g23960 OS=Arabidopsis thaliana GN=At4g23960 PE=4 SV=1

 Score =  160 bits (405), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 90/115 (78%)

Query: 99  MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +   PV
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGY 213
           NGWKA++A T+ V+ VN +FF+I+  RSLP M+  WLN+DYVKC + SGELF+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
449462569	313	PREDICTED: F-box protein SKIP8-like [Cuc	0.938	0.686	0.606	1e-70
225426290	307	PREDICTED: F-box protein SKIP8 [Vitis vi	0.938	0.700	0.619	4e-68
297742355	325	unnamed protein product [Vitis vinifera]	0.890	0.627	0.636	1e-67
356511437	286	PREDICTED: F-box protein SKIP8-like [Gly	0.886	0.709	0.610	2e-65
356523598	284	PREDICTED: F-box protein SKIP8-like [Gly	0.886	0.714	0.594	2e-63
388495556	284	unknown [Medicago truncatula]	0.868	0.700	0.582	1e-62
255537841	302	conserved hypothetical protein [Ricinus	0.550	0.417	0.865	3e-62
388492372	284	unknown [Medicago truncatula]	0.873	0.704	0.594	3e-62
224058184	210	predicted protein [Populus trichocarpa]	0.554	0.604	0.866	5e-61
224072218	301	f-box family protein [Populus trichocarp	0.572	0.435	0.832	3e-60

>gi|449462569|ref|XP_004149013.1| PREDICTED: F-box protein SKIP8-like [Cucumis sativus] gi|449506211|ref|XP_004162683.1| PREDICTED: F-box protein SKIP8-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/231 (60%), Positives = 161/231 (69%), Gaps = 16/231 (6%)

Query: 1   MEIITST---FFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCN 57
           MEI++S      S  F IAAI T    LLA+  A    S        +  S +   ++CN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 58  CTCSCNG--------PAA--ASAAEREMLEVGRHAATA---ATAVVAERGSGASMMEQLV 104
           CTCS NG        P A   S+    M  +   A      A  VV ER +GASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 105 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAY 164
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD+V P+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDS 215
           YAATR ++N+NA+F+NIIR+RSL AMSRFWLNADYVKCIHASGE FSGY++
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNA 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426290|ref|XP_002265246.1| PREDICTED: F-box protein SKIP8 [Vitis vinifera]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 166/226 (73%), Gaps = 11/226 (4%)

Query: 1   MEIITS---TFFSSQFVIAAIFTIFSL---LLAVRTARSTKSTK-QSDGATSATSATARK 53
           MEI +S    F   QF++A + +   L   L AVR + ++   K +S  +    S  + +
Sbjct: 1   MEIASSFAGDFSFLQFLVALVVSGLCLVCALFAVRFSPASFGRKSRSVESDGGGSGGSLR 60

Query: 54  KSCNCTCSC----NGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITT 109
           K+C+C C C    +GPA A+AA    L  G         VV+ER +GASMMEQLVPEITT
Sbjct: 61  KACSCDCLCRSAESGPATATAAAAAYLNGGAEEMLDRALVVSERQTGASMMEQLVPEITT 120

Query: 110 HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATR 169
           HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATR
Sbjct: 121 HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATR 180

Query: 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDS 215
           A+VN+NAEFFNIIRERS+ +MSR W NADYVKC+HASGELF+GY++
Sbjct: 181 AIVNINAEFFNIIRERSITSMSRLWFNADYVKCVHASGELFTGYNA 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742355|emb|CBI34504.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/212 (63%), Positives = 160/212 (75%), Gaps = 8/212 (3%)

Query: 12  QFVIAAIFTIFSL---LLAVRTARSTKSTK-QSDGATSATSATARKKSCNCTCSC----N 63
           QF++A + +   L   L AVR + ++   K +S  +    S  + +K+C+C C C    +
Sbjct: 33  QFLVALVVSGLCLVCALFAVRFSPASFGRKSRSVESDGGGSGGSLRKACSCDCLCRSAES 92

Query: 64  GPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRL 123
           GPA A+AA    L  G         VV+ER +GASMMEQLVPEITTHALSYLDYPSLCRL
Sbjct: 93  GPATATAAAAAYLNGGAEEMLDRALVVSERQTGASMMEQLVPEITTHALSYLDYPSLCRL 152

Query: 124 SMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIR 183
           SMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+VN+NAEFFNIIR
Sbjct: 153 SMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNINAEFFNIIR 212

Query: 184 ERSLPAMSRFWLNADYVKCIHASGELFSGYDS 215
           ERS+ +MSR W NADYVKC+HASGELF+GY++
Sbjct: 213 ERSITSMSRLWFNADYVKCVHASGELFTGYNA 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511437|ref|XP_003524433.1| PREDICTED: F-box protein SKIP8-like [Glycine max]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 155/218 (71%), Gaps = 15/218 (6%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAV-RTARSTKSTKQSDGATSATSATARKKSCNCT 59
           MEI +    S  F++A   T    L A+    RS+ S  +            RK  C+C 
Sbjct: 1   MEIFS--VLSEPFLVALAVTALCFLFALFALLRSSFSLPRR-------FTPPRKHHCDCA 51

Query: 60  CSCNGPAAA--SAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDY 117
            + +  A    +    EMLE    +   A AV+ ER +G+SMME+LVPEITTHALSYLDY
Sbjct: 52  SNSDAGAVPYLNGGCTEMLEP---SPVPAPAVLTERRTGSSMMEELVPEITTHALSYLDY 108

Query: 118 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAE 177
           PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+VN+N E
Sbjct: 109 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNINTE 168

Query: 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDS 215
           FFNI+R++SL AMSRFWLNADYVKCIHASGELFSGY++
Sbjct: 169 FFNIVRDKSLQAMSRFWLNADYVKCIHASGELFSGYNA 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523598|ref|XP_003530424.1| PREDICTED: F-box protein SKIP8-like [Glycine max]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 151/217 (69%), Gaps = 14/217 (6%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC 60
           MEI +    S  F++A   T    L A+       S  +S  +        RK  C+CT 
Sbjct: 1   MEIFS--VLSEPFLVALAVTALCFLFALF------SLLRSSFSLPRRFTPPRKHHCDCTS 52

Query: 61  SCNGPAAA--SAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYP 118
           + +  A    +    EMLE    +   A AV+ ER  G+SMME+LVPEITTHALSYLDYP
Sbjct: 53  NSDAAAVPYLNGGRTEMLEP---SPVPAPAVLTERRMGSSMMEELVPEITTHALSYLDYP 109

Query: 119 SLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEF 178
           SLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDS+ P NGWKAYYAATRA+VN+N EF
Sbjct: 110 SLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSITPTNGWKAYYAATRAIVNINTEF 169

Query: 179 FNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDS 215
           FNI+R++SL AMS FWLNADYVKCIHASG  FSGY++
Sbjct: 170 FNIVRDKSLQAMSHFWLNADYVKCIHASG-FFSGYNA 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495556|gb|AFK35844.1| unknown [Medicago truncatula]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/218 (58%), Positives = 153/218 (70%), Gaps = 19/218 (8%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC 60
           M+I ++  FS  F++A   T     +A+ +   T S  +          T   K CNC  
Sbjct: 1   MDIFSN--FSQPFLLAVTVTALCFFIALFSFFRTFSLSRR--------FTPSTKHCNCAS 50

Query: 61  SCNGPAAA----SAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLD 116
           S +   A     +    +M E+     +    V+A+R +G+SMME+LVPEITTHALSYLD
Sbjct: 51  SDSDSDAVVPYLNGGFSQMTEI-----SPPPVVLADRRTGSSMMEELVPEITTHALSYLD 105

Query: 117 YPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNA 176
           YPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+V VN 
Sbjct: 106 YPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVRPSNGWKAYYAATRAIVIVNT 165

Query: 177 EFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYD 214
           EFFNI+R++S+ AMSRFWLNADYVKC+HASGELFSGY+
Sbjct: 166 EFFNILRDKSISAMSRFWLNADYVKCVHASGELFSGYN 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537841|ref|XP_002509987.1| conserved hypothetical protein [Ricinus communis] gi|223549886|gb|EEF51374.1| conserved hypothetical protein [Ricinus communis]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 109/126 (86%), Positives = 119/126 (94%)

Query: 90  VAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 149
           V +R +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT
Sbjct: 95  VVDRQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 154

Query: 150 LEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL 209
           LEQD+V PVNGWKAYYA+TRA+VN N EFFN+I++RSL AMSR WLNADYVKCIHASGEL
Sbjct: 155 LEQDTVTPVNGWKAYYASTRAIVNANTEFFNVIKDRSLQAMSRIWLNADYVKCIHASGEL 214

Query: 210 FSGYDS 215
           FSGY++
Sbjct: 215 FSGYNA 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492372|gb|AFK34252.1| unknown [Medicago truncatula]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 152/217 (70%), Gaps = 17/217 (7%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC 60
           M+I ++  FS  F++A   T     +A+ +   T S  +          T   K CNC  
Sbjct: 1   MDIFSN--FSQPFLLAVTVTALCFFIALFSFFRTFSLSRR--------FTPSTKHCNCAS 50

Query: 61  SCNGPAAASAAEREMLEVGRHAATAAT---AVVAERGSGASMMEQLVPEITTHALSYLDY 117
           S     + S A    L  G    T  +    V+A+R +G+SMME+LVPEITTHALSYLDY
Sbjct: 51  S----DSNSDAVVPYLNGGFSQTTEISPPPVVLADRRTGSSMMEELVPEITTHALSYLDY 106

Query: 118 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAE 177
           PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+V VN E
Sbjct: 107 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVRPSNGWKAYYAATRAIVIVNTE 166

Query: 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYD 214
           FFNI+R++S+ AMSRFWLNADYVKC+HASGELFSGY+
Sbjct: 167 FFNILRDKSISAMSRFWLNADYVKCVHASGELFSGYN 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058184|ref|XP_002299461.1| predicted protein [Populus trichocarpa] gi|222846719|gb|EEE84266.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 110/127 (86%), Positives = 118/127 (92%)

Query: 89  VVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148
           +V E+ +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF
Sbjct: 1   MVVEKQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 60

Query: 149 TLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE 208
           TLEQDSV PVNGWKAYYAATRA+VNVN EFFNIIRERSL AMS+ WL+ADYVKC HASGE
Sbjct: 61  TLEQDSVTPVNGWKAYYAATRAIVNVNTEFFNIIRERSLQAMSQLWLHADYVKCTHASGE 120

Query: 209 LFSGYDS 215
             SGY++
Sbjct: 121 NLSGYNA 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072218|ref|XP_002303658.1| f-box family protein [Populus trichocarpa] gi|222841090|gb|EEE78637.1| f-box family protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 85  AATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
           AA  +V ++ +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY
Sbjct: 88  AAEDMVVDKQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 147

Query: 145 HKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH 204
           HKDFTLEQ SV PV GWKAYYA TRA+VNVN EFFNIIRERSL AMS+ WLN+DYVKC H
Sbjct: 148 HKDFTLEQGSVTPVIGWKAYYAVTRAIVNVNTEFFNIIRERSLQAMSQLWLNSDYVKCTH 207

Query: 205 ASGELFSGYDS 215
           ASGE FSGY++
Sbjct: 208 ASGENFSGYNA 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:505006436	231	AT4G10925 "AT4G10925" [Arabido	0.519	0.515	0.848	5.5e-54
TAIR|locus:2138166	122	AT4G23960 "AT4G23960" [Arabido	0.532	1.0	0.590	4.4e-36

TAIR|locus:505006436 AT4G10925 "AT4G10925" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 101/119 (84%), Positives = 110/119 (92%)

Query:    96 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV 155
             G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct:    33 GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query:   156 IPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYD 214
              PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+DYVKCIHASGELFSGY+
Sbjct:    93 TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYN 151

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2138166 AT4G23960 "AT4G23960" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 72/122 (59%), Positives = 93/122 (76%)

Query:    99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
             M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +   PV
Sbjct:     1 MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query:   159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYL 218
             NGWKA++A T+ V+ VN +FF+I+  RSLP M+  WLN+DYVKC + SGELF+GY   Y 
Sbjct:    61 NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGYLLTYP 120

Query:   219 VL 220
             +L
Sbjct:   121 LL 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.130   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      229       210   0.00080  112 3  11 22  0.45    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  181 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.12u 0.14s 16.26t   Elapsed:  00:00:01
  Total cpu time:  16.12u 0.14s 16.26t   Elapsed:  00:00:01
  Start:  Thu May  9 19:35:53 2013   End:  Thu May  9 19:35:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YV9	SKIP8_ARATH	No assigned EC number	0.7794	0.5938	0.5887	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006729001 SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (307 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam12937	47	pfam12937, F-box-like, F-box-like	5e-06
pfam00646	48	pfam00646, F-box, F-box domain	0.003

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
           +  L  EI     SYLD   L RL++     R+ A+DD+ W+ L 
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLC 45

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWK 141
           +  L  ++    LS LD   L RLS+ +   R   +    WK
Sbjct: 3   LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 44

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.55
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	99.11
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	99.01
KOG2997	366	consensus F-box protein FBX9 [General function pre	98.6
KOG3926	332	consensus F-box proteins [Amino acid transport and	98.28
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.12
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.0
PF06881	109	Elongin_A: RNA polymerase II transcription factor	97.95
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
TIGR02246	128	conserved hypothetical protein. This family consis	96.74
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	96.33
PF13474	121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	96.19
PF13013	109	F-box-like_2: F-box-like domain	95.3
PF14534	107	DUF4440: Domain of unknown function (DUF4440); PDB	92.9
PF12680	102	SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8	92.79
cd00781	122	ketosteroid_isomerase ketosteroid isomerase: Many	91.37
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	91.26
COG4319	137	Ketosteroid isomerase homolog [Function unknown]	90.3
PF11533	125	DUF3225: Protein of unknown function (DUF3225); In	85.63
TIGR02096	129	conserved hypothetical protein, steroid delta-isom	85.0
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	84.83
PRK08241	339	RNA polymerase factor sigma-70; Validated	83.35
TIGR02960	324	SigX5 RNA polymerase sigma-70 factor, TIGR02960 fa	81.59

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.55  E-value=3.1e-15  Score=100.52  Aligned_cols=46  Identities=37%  Similarity=0.541  Sum_probs=41.1

Q ss_pred             hhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHH
Q 027021          100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH  145 (229)
Q Consensus       100 l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~  145 (229)
                      +..||+||+.+||+|||+.||+++++|||+|+++++++.+||++|.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence            4679999999999999999999999999999999999999999875

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=99.11  E-value=8.4e-11  Score=78.38  Aligned_cols=47  Identities=32%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             hhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHH
Q 027021           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH  145 (229)
Q Consensus        99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~  145 (229)
                      .+.+||+|++.+||+||+..|++++++|||.|++++.++.+|++.++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r   48 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR   48 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence            46789999999999999999999999999999999999999998864

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=99.01  E-value=3.2e-10  Score=72.35  Aligned_cols=40  Identities=28%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             ccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHH
Q 027021          103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKA  142 (229)
Q Consensus       103 LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~  142 (229)
                      ||+|++.+||+||++.|++++++|||+|+.+..++.+|++
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999985

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=98.60  E-value=2.3e-08  Score=93.01  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             CcCchhhhccHHHHHHHcc-----CCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccCCCCC-------CCcch
Q 027021           95 SGASMMEQLVPEITTHALS-----YLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIP-------VNGWK  162 (229)
Q Consensus        95 ~~~~~l~~LP~EILl~ILS-----yLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~~~~~-------~~~WK  162 (229)
                      ++-..+..||+|||+.||.     .||.+||-++|.|||.|+..+.+|.+||.-|.+.|+....+..+       ..+||
T Consensus       102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR  181 (366)
T KOG2997|consen  102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWR  181 (366)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHH
Confidence            3344478899999999884     78999999999999999999999999999999988764332222       58999


Q ss_pred             HHHHHHHHH
Q 027021          163 AYYAATRAV  171 (229)
Q Consensus       163 ~lY~~~rAI  171 (229)
                      ++|+.+-.|
T Consensus       182 ~Mfl~RpRv  190 (366)
T KOG2997|consen  182 EMFLERPRV  190 (366)
T ss_pred             HHHhhCcce
Confidence            999876654

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=98.28  E-value=1.1e-06  Score=80.67  Aligned_cols=98  Identities=19%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             ccccchhcccCCcCchhhhccHHHHHHHcc-CCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCccc------CCCC
Q 027021           84 TAATAVVAERGSGASMMEQLVPEITTHALS-YLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ------DSVI  156 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~LP~EILl~ILS-yLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~------~~~~  156 (229)
                      ....+...+|.+....+.+||.|+++.|+. +-|..||..++|+=-.++.+.+++.+||.||+=+|...|      .+..
T Consensus       186 v~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~  265 (332)
T KOG3926|consen  186 VLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKK  265 (332)
T ss_pred             HHHhhcccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccc
Confidence            334445555666777789999999998765 558899999999999999999999999999998887643      1233


Q ss_pred             CCCcchHHHHHHHHHHHhhHHHHHH
Q 027021          157 PVNGWKAYYAATRAVVNVNAEFFNI  181 (229)
Q Consensus       157 ~~~~WK~lY~~~rAIv~vn~~fY~a  181 (229)
                      ....||..|.+.+.--.+.+.|-+.
T Consensus       266 ~q~dWkqmyf~L~r~yg~keqyad~  290 (332)
T KOG3926|consen  266 GQKDWKQMYFQLRRTYGVKEQYADT  290 (332)
T ss_pred             cchhHHHHHHHHHHhcChHHHHHHH
Confidence            4578999999999877776665444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3.5e-07  Score=85.49  Aligned_cols=50  Identities=22%  Similarity=0.234  Sum_probs=45.7

Q ss_pred             hhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcC
Q 027021          100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT  149 (229)
Q Consensus       100 l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~  149 (229)
                      .+.||+||++.||+.|.-++|++++-|||||++++.|+.+|..+-...-+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~  147 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN  147 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc
Confidence            78999999999999999999999999999999999999999988554433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.12  E-value=2.3e-06  Score=80.95  Aligned_cols=54  Identities=26%  Similarity=0.407  Sum_probs=50.5

Q ss_pred             CcCchhhhcc----HHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhc
Q 027021           95 SGASMMEQLV----PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF  148 (229)
Q Consensus        95 ~~~~~l~~LP----~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f  148 (229)
                      ...++++.||    +||..+||||||..|||.+-.||++|+++.+|..+||+|+.+..
T Consensus        70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~v  127 (499)
T KOG0281|consen   70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMV  127 (499)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhc
Confidence            5578999999    99999999999999999999999999999999999999987553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.00  E-value=4.1e-06  Score=82.47  Aligned_cols=81  Identities=21%  Similarity=0.322  Sum_probs=66.1

Q ss_pred             ccCCcCchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccCCC---CC------CCcch
Q 027021           92 ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV---IP------VNGWK  162 (229)
Q Consensus        92 ~~~~~~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~~~---~~------~~~WK  162 (229)
                      ++....+++..||.|+..+||+|||+++|+++.|||+.|+.++.++..|.+.+...........   .+      ...||
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  179 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK  179 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence            4667789999999999999999999999999999999999999999999999887765432111   11      25889


Q ss_pred             HHHHHHHHHH
Q 027021          163 AYYAATRAVV  172 (229)
Q Consensus       163 ~lY~~~rAIv  172 (229)
                      .+|..+..+.
T Consensus       180 s~~~~~~~~~  189 (537)
T KOG0274|consen  180 SFYRRRFRLS  189 (537)
T ss_pred             hhhhhhhhcc
Confidence            9888776554

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=97.95  E-value=1.5e-05  Score=62.88  Aligned_cols=70  Identities=19%  Similarity=0.313  Sum_probs=57.5

Q ss_pred             hhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccC--CCCCCCcchHHHHHHHH
Q 027021           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD--SVIPVNGWKAYYAATRA  170 (229)
Q Consensus        99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~--~~~~~~~WK~lY~~~rA  170 (229)
                      .+..+|-+++..||..+.+..|.++-.-|..+...  +|.||+++|+++|+....  .+..+.+|+++|...+.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK   74 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence            35679999999999999999999999999665554  789999999999986332  33445699999998764

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=1.1e-05  Score=77.92  Aligned_cols=53  Identities=28%  Similarity=0.451  Sum_probs=46.6

Q ss_pred             chhh-hccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCc
Q 027021           98 SMME-QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL  150 (229)
Q Consensus        98 ~~l~-~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~  150 (229)
                      +.++ .||||++++||||||..+|++.+|+|+.|+.+|.|..-|.++-..+|+.
T Consensus        69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r  122 (483)
T KOG4341|consen   69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR  122 (483)
T ss_pred             ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh
Confidence            4444 7999999999999999999999999999999999999999986555543

>TIGR02246 conserved hypothetical protein

Probab=96.74  E-value=0.0045  Score=47.13  Aligned_cols=56  Identities=7%  Similarity=0.073  Sum_probs=46.5

Q ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ..+|.....+|++++..+|.++|+.+|.++....+ .+|+ .+.|+++|++.|+..+.
T Consensus         3 ~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-~~g~-~~~G~~~i~~~~~~~~~   58 (128)
T TIGR02246         3 ERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVT-VPGQ-VWKGREAIAAAHEAFLA   58 (128)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-CCCC-eecCHHHHHHHHHHHhc
Confidence            56788888999999999999999999988754443 2444 88999999999998764

This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=96.33  E-value=0.00023  Score=67.06  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             hhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccC-CCCCCCcchHHHHHHHHHHHhh
Q 027021           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD-SVIPVNGWKAYYAATRAVVNVN  175 (229)
Q Consensus        99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~-~~~~~~~WK~lY~~~rAIv~vn  175 (229)
                      .++.||..+++.|+++|++++|.+++.|.|++.++++.+.+|++.|++++..... ...+...||-++.....-+.+.
T Consensus         7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~is~e~~~~~~etgqsF~h~~f~yvgvv   84 (386)
T KOG4408|consen    7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLISEEEKTQKYETGQSFLHDTFGYVGVV   84 (386)
T ss_pred             chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccccccccCCcccccceeeeeecccceEE
Confidence            4678999999999999999999999999999999999999999999999886432 3334567776554444444333

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B

Probab=96.19  E-value=0.011  Score=44.32  Aligned_cols=54  Identities=11%  Similarity=0.166  Sum_probs=44.5

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC-ccccchHHHHHHHHHhhcc
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-ELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg-~~l~G~daV~~sW~~if~~  226 (229)
                      |.....+|++++..+|+++|.++|+  +.+..++++. +.+.|+++|++-|+..|..
T Consensus         1 V~~~~~~~~~a~~~~D~~~~~~~~~--~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~   55 (121)
T PF13474_consen    1 VEALLEEWIEAFERGDIDALLSLFS--DDFVFFGTGPGEIWRGREAIRAYFERDFES   55 (121)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHEE--EEEEEEETTSSSEEESHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHhhC--CCEEEEcCCCCceECCHHHHHHHHHHHhhh
Confidence            3456678999999999999999999  6688888765 6667999999999998853

>PF13013 F-box-like_2: F-box-like domain

Probab=95.30  E-value=0.024  Score=45.48  Aligned_cols=33  Identities=27%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             hhhhccHHHHHHHccCCChHHHHHHhhhcHHHH
Q 027021           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR  131 (229)
Q Consensus        99 ~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~  131 (229)
                      .+.+||.||+..|+.|++.++++.++.+|+..+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r   53 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYR   53 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999443

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A

Probab=92.90  E-value=0.14  Score=37.00  Aligned_cols=49  Identities=6%  Similarity=0.290  Sum_probs=42.2

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHH
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGN  222 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~  222 (229)
                      |.....+|.+++..+|++.+..++++  ...-+|++|..+ |.+++++.+..
T Consensus         1 I~a~~~~~~~A~~~~D~~~~~~~~~~--d~~~~~~~g~~~-~~~~~l~~~~~   49 (107)
T PF14534_consen    1 IRALEEQYEDAFNAGDIDALASLYAD--DFVFVGPGGTIL-GKEAILAAFKS   49 (107)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHTTEEE--EEEEEETTSEEE-EHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHhhhCC--CEEEECCCCCEe-CHHHHHHHHhh
Confidence            45677889999999999999999984  477789999886 99999999976

>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A

Probab=92.79  E-value=0.17  Score=35.88  Aligned_cols=47  Identities=13%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             HHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          176 AEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       176 ~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      .+||+++..+|+++|..++.++  ++-.+| +..+.|.+++++-|+..+.
T Consensus         2 ~~~~~a~~~~d~~~i~~~~~~d--~~~~~~-~~~~~g~~~~~~~~~~~~~   48 (102)
T PF12680_consen    2 RRFFEAWNAGDLDAIAALFAPD--AVFHDP-GGTLRGREAIREFFEEFFE   48 (102)
T ss_dssp             HHHHHHHHTTHHHHHHHTEEEE--EEEEET-TSEEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHcCCC--EEEEeC-CCcccCHHHHHHHHHHHHh
Confidence            5799999999999999998876  555688 5458999999999998874

...

>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon

Probab=91.37  E-value=0.63  Score=35.36  Aligned_cols=54  Identities=6%  Similarity=0.054  Sum_probs=41.7

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhhc
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if~  225 (229)
                      ++.....+||+++.++|++.|..++.++-..  ..| +...+.|.++|++-|...+.
T Consensus         4 ~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~--~~p~~~~~~~G~~~i~~~~~~~~~   58 (122)
T cd00781           4 EMKAAVQRYVEAVNAGDPEGIVALFADDATV--EDPVGSPPRSGRAAIAAFYAQSLG   58 (122)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHcCCCeEE--eCCCCCCCccCHHHHHHHHHHHhc
Confidence            3445566799999999999999998877433  334 45678999999999988653

Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=91.26  E-value=0.19  Score=48.09  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=32.7

Q ss_pred             hhhccHHHHHHHccCC-ChHHHHHHhhhcHHHHHHcCC
Q 027021          100 MEQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKAAND  136 (229)
Q Consensus       100 l~~LP~EILl~ILSyL-D~~dL~~lsqvcR~~~~lA~d  136 (229)
                      ..+||+|||..|...| ...|+++...|||.||..+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            4589999999999999 677999999999999986553

>COG4319 Ketosteroid isomerase homolog [Function unknown]

Probab=90.30  E-value=0.96  Score=37.86  Aligned_cols=55  Identities=13%  Similarity=0.207  Sum_probs=47.1

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ++|-+++..|-.+++.+|+++.+....++  ++-+-|.|..+.|.++|+.-|+.+|+
T Consensus        10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdD--av~f~~~~~~~~Gk~~i~k~~~~~~~   64 (137)
T COG4319          10 DAIRAAIADWAAAVRAKDADAVADFYTDD--AVVFPPPGLQRKGKAAIRKAFEGIFA   64 (137)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhcCCc--eEEecCCCCcccCHHHHHHHHHHHHH
Confidence            56777888899999999999999987655  56666779999999999999999994

>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function

Probab=85.63  E-value=1.8  Score=35.71  Aligned_cols=49  Identities=12%  Similarity=0.160  Sum_probs=36.7

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHH
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYL  218 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~  218 (229)
                      ..+..+-.+|.+++..+|++.|+.+-+++.++.-.- .++.|.|+++|++
T Consensus        10 aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg-~~E~LyG~~aI~a   58 (125)
T PF11533_consen   10 AEVTAAFDRYERALMANDVDALDALFWDDPRTVRYG-AGENLYGHDAIRA   58 (125)
T ss_dssp             HHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEE-TTEEEESHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEEC-CCccccCHHHHHH
Confidence            345667778889999999999999999998887663 4678899999974

; PDB: 2OWP_A 2RCD_B.

>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related

Probab=85.00  E-value=2.5  Score=32.21  Aligned_cols=51  Identities=8%  Similarity=0.120  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       174 vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      +..+||+++.++|++.+.++..++- +...++.+..+.|.+++++-++.++.
T Consensus         3 iv~~~~~a~~~~d~~~~~~~~~~d~-~~~~~~~~~~~~G~~~~~~~~~~~~~   53 (129)
T TIGR02096         3 LAQHWIEAFNRGDMDAVLALLAEDV-LYDDNQGGRVLGGKAQLARFLAPYRT   53 (129)
T ss_pred             HHHHHHHHHHCCCHHHHHHhcCCCe-EEEcCCCCcEeccHHHHHHHHHHHHH
Confidence            4567999999999999999988773 33333344566779999988877663

This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=84.83  E-value=0.83  Score=34.84  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             chhhhccHHHHHHHccCCChHHHHHH
Q 027021           98 SMMEQLVPEITTHALSYLDYPSLCRL  123 (229)
Q Consensus        98 ~~l~~LP~EILl~ILSyLD~~dL~~l  123 (229)
                      +.+..||.||-.+||+||+-.||..+
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~~l   95 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLKKL   95 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence            66778999999999999999999764

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>PRK08241 RNA polymerase factor sigma-70; Validated

Probab=83.35  E-value=2.8  Score=38.13  Aligned_cols=50  Identities=10%  Similarity=0.111  Sum_probs=40.0

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++..||+++|..+++++  |++..| ++..+.|.++|++-|..++
T Consensus       218 ~~v~~~~~A~~~gD~~~l~~lla~D--v~~~~p~~~~~~~G~~~v~~~~~~~~  268 (339)
T PRK08241        218 ALLARYVAAFEAYDVDALVALLTED--ATWSMPPFPLWYRGRDAIAAFLAGQC  268 (339)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHhcCC--EEEEcCCCCCcccCHHHHHHHHHhhc
Confidence            4556899999999999999998875  444445 4555999999999998864

>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family

Probab=81.59  E-value=3.4  Score=37.10  Aligned_cols=51  Identities=8%  Similarity=0.130  Sum_probs=42.1

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ....+||+++..||++.+.++++.+- +..+.+++..+.|.++|...+..++
T Consensus       208 ~~v~~~~~a~~~gD~~~l~~Lla~Dv-~~~~p~~~~~~~G~~~v~~~~~~~~  258 (324)
T TIGR02960       208 DLLERYIAAFESYDLDALTALLHEDA-IWEMPPYTLWYQGRPAIVGFIHTVC  258 (324)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcCCe-EEEcCCCCcceeCHHHHHHHHHHhc
Confidence            45678999999999999999998873 3335567788999999999998873

This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	9e-09
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	2e-08
3cnx_A	170	Uncharacterized protein; putative dehydratase, NTF	2e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	5e-05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	6e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	9e-05

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 53.6 bits (128), Expect = 9e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 97  ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148
           AS + +L  ++  + LS+L    LC+L  TN    +   D   W+    +D 
Sbjct: 2   ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259} Length = 144

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 12/49 (24%), Positives = 15/49 (30%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYD 214
                       F+     RSL  M   W   D+V CIH      +G  
Sbjct: 5   PVFPTPEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRA 53

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17 Length = 170

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 15/65 (23%)

Query: 165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWL---------------NADYVKCIHASGEL 209
                 V   N  F+  +       +S  WL               +A  V C+H    +
Sbjct: 8   DTDVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPV 67

Query: 210 FSGYD 214
            SG  
Sbjct: 68  LSGRG 72

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNA-WKALYHKDFTLEQDSVIPV 158
           +  L  EI+    +YL +  +      +    K      + WK L   +  +       +
Sbjct: 15  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSL 74

Query: 159 NG 160
           N 
Sbjct: 75  NL 76

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 92  ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
           E   G S  + L  E+     S L  P L ++S       + A+D++ W+ L
Sbjct: 2   ENFPGVSW-DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 102 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVI----- 156
            L  E+  + LS+L+   L + + T    R  A D+  W+    ++   E   +      
Sbjct: 21  LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80

Query: 157 ----PVNGWKAYYAATRAVVNV 174
                 + WK+ Y     +   
Sbjct: 81  KPGFIHSPWKSAYIRQHRIDTN 102

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 102 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDS 154
           + +  I  + LSYLD  SLC   +      +  +D   WK L  +    +   
Sbjct: 17  RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLW 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.54
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.47
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.46
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.43
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.37
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.32
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	99.18
3cnx_A	170	Uncharacterized protein; putative dehydratase, NTF	98.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.52
3b7c_A	122	Uncharacterized protein; NTF-2 like protein, struc	98.2
2rcd_A	129	Uncharacterized protein; structural genomics, join	98.2
3soy_A	145	NTF2-like superfamily protein; structural genomics	98.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.94
2owp_A	129	Hypothetical protein BXE_B1374; cystatin-like fold	97.87
2ux0_A	143	Calcium-calmodulin dependent protein kinase (CAM I	97.67
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	97.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.43
3hx8_A	129	MLR2180 protein, putative ketosteroid isomerase; s	97.33
3d9r_A	135	Ketosteroid isomerase-like protein; YP_049581.1, s	97.29
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	97.28
2gxf_A	142	Hypothetical protein YYBH; alpha-beta protein., st	97.17
4i4k_A	143	Uncharacterized protein SGCJ; structural genomics,	96.86
3bb9_A	148	Putative orphan protein; structural genomics, join	96.84
2r4i_A	123	Uncharacterized protein; NTF2-like protein, struct	96.6
3rob_A	139	Uncharacterized conserved protein; structural geno	96.55
2k54_A	123	Protein ATU0742; protein of unknown function, stru	96.52
3h51_A	156	Putative calcium/calmodulin dependent protein KIN	96.49
3cu3_A	172	Domain of unknown function with A cystatin-like F;	95.98
3fsd_A	134	NTF2-like protein of unknown function in nutrient;	95.17
1oh0_A	131	Steroid delta-isomerase; ketosteroid isomerase, KS	94.71
1ohp_A	125	Steroid delta-isomerase; inhibitor; HET: ESR; 1.53	94.54
3gzr_A	146	Uncharacterized protein with A NTF2-like fold; str	94.27
3f7x_A	151	Putative polyketide cyclase; structural genomics,	93.77
2a15_A	139	Hypothetical protein RV0760C; beta-alpha-barrel, s	93.5
3g16_A	156	Uncharacterized protein with cystatin-like fold; Y	93.36
2bng_A	149	MB2760; epoxide hydrolase, limonene, hydrolase, st	93.29
3h3h_A	122	Uncharacterized snoal-like protein; structural gen	93.2
3ff2_A	117	Uncharacterized cystatin fold protein (YP_497570.	93.2
1nww_A	149	Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R	92.96
3dmc_A	134	NTF2-like protein; structural genomics, joint cent	92.56
4h3u_A	158	Hypothetical protein; structural genomics, PSI-bio	91.77
3f14_A	112	Uncharacterized NTF2-like protein; YP_680363.1, NT	91.69
3ebt_A	132	Uncharacterized NTF2-like protein; structural geno	91.28
3g8z_A	148	Protein of unknown function with cystatin-like FO;	90.35
2chc_A	170	Protein RV3472; hypothetical protein; 1.69A {Mycob	90.1
3i0y_A	140	Putative polyketide cyclase; cystatin-like fold, s	89.96
1tuh_A	156	BAL32A, hypothetical protein EGC068; unknown funct	89.85
3en8_A	128	Uncharacterized NTF-2 like protein; YP_553245.1, N	89.77
3fh1_A	129	Uncharacterized NTF2-like protein; structural geno	89.49
3fgy_A	135	Uncharacterized NTF2-like protein; structural geno	89.0
3dm8_A	143	Uncharacterized protein RPA4348; siras, putative i	88.86
3k0z_A	159	Putative polyketide cyclase; structural genomics,	88.24
3f40_A	114	Uncharacterized NTF2-like protein; YP_677363.1, NT	87.66
2rfr_A	155	Uncharacterized protein; structural genomics, join	87.22
3b8l_A	163	Uncharacterized protein; putative aromatic ring hy	86.94
1s5a_A	150	Hypothetical protein YESE; structural genomics, PS	86.92
3mso_A	143	Steroid delta-isomerase; structural genomics, join	86.89
3f8h_A	150	Putative polyketide cyclase; structural genomics,	86.57
3hk4_A	136	MLR7391 protein; NTF2-like protein, structural gen	86.24
3f8x_A	148	Putative delta-5-3-ketosteroid isomerase; structur	85.28
3ec9_A	140	Uncharacterized NTF2-like protein; structural geno	85.08
2gex_A	152	SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St	82.41
3rga_A	283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	81.45
2f86_B	143	Hypothetical protein K11E8.1D; UNC-43, oligomeriza	80.92
1z1s_A	163	Hypothetical protein PA3332; beta barrel, conserve	80.2
2f99_A	153	Aklanonic acid methyl ester cyclase, AKNH; anthrac	80.06

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.54  E-value=7e-15  Score=130.24  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=84.4

Q ss_pred             cCCcCchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCccc---------CCCCCCCcchH
Q 027021           93 RGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ---------DSVIPVNGWKA  163 (229)
Q Consensus        93 ~~~~~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~---------~~~~~~~~WK~  163 (229)
                      |....+++..||+|++.+||+|||+.||+++++|||+|+++++|+.+||++|++......         .......+||.
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~   91 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS   91 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHH
Confidence            566789999999999999999999999999999999999999999999999986643211         11123478999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCce-eEEeCCCcccc
Q 027021          164 YYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYV-KCIHASGELFS  211 (229)
Q Consensus       164 lY~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V-~CIHPgg~~l~  211 (229)
                      .|..+..+.   .    ..+.+.......+-.+.+.| .|++++|..+.
T Consensus        92 ~~~~~~~~~---~----~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~  133 (445)
T 2ovr_B           92 AYIRQHRID---T----NWRRGELKSPKVLKGHDDHVITCLQFCGNRIV  133 (445)
T ss_dssp             HHHHHHHHH---H----HHHHSCCCCCEEEECSTTSCEEEEEEETTEEE
T ss_pred             HHhhhhhhh---h----cccCCCcceeEEecccCCCcEEEEEEcCCEEE
Confidence            999877542   2    33556554444445566654 88988776553

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.47  E-value=5.1e-14  Score=127.48  Aligned_cols=77  Identities=9%  Similarity=0.200  Sum_probs=61.7

Q ss_pred             cCCcCchhhhccHHHHHHHccCCChHHHH-HHhhhcHHHHHHcCCchHHHHHHHhhcCccc-CCCCCCCcchHHHHHHH
Q 027021           93 RGSGASMMEQLVPEITTHALSYLDYPSLC-RLSMTNSLMRKAANDDNAWKALYHKDFTLEQ-DSVIPVNGWKAYYAATR  169 (229)
Q Consensus        93 ~~~~~~~l~~LP~EILl~ILSyLD~~dL~-~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~-~~~~~~~~WK~lY~~~r  169 (229)
                      +.+....+..||+|||.+||+||+++||+ ++++|||+|+.+++|+.+||++|++...... ....+..+||.+|..++
T Consensus        44 ~~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~Wk~~y~~~~  122 (297)
T 2e31_A           44 EAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSK  122 (297)
T ss_dssp             ---CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----CCSCHHHHHHHHH
T ss_pred             ccccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccccCCCCCChhhhhehee
Confidence            44555678899999999999999999999 9999999999999999999999998833321 22236778999998764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.46  E-value=2.5e-14  Score=96.89  Aligned_cols=47  Identities=23%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             CchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHH
Q 027021           97 ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL  143 (229)
Q Consensus        97 ~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L  143 (229)
                      ...+..||+||+.+||+||++.||+++++|||+|+++++++.+||++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            45678999999999999999999999999999999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.43  E-value=7.7e-14  Score=123.80  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=53.5

Q ss_pred             cCCcCchhhhccHH----HHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcC
Q 027021           93 RGSGASMMEQLVPE----ITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT  149 (229)
Q Consensus        93 ~~~~~~~l~~LP~E----ILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~  149 (229)
                      |....|++..||+|    |+++||+|||+.||+++++|||+|+++++|+.|||++|++++.
T Consensus         4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A            4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            45678999999999    9999999999999999999999999999999999999998864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.37  E-value=5.5e-13  Score=117.76  Aligned_cols=57  Identities=16%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             ccCCcCchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCC-chHHHHHHHhhc
Q 027021           92 ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAAND-DNAWKALYHKDF  148 (229)
Q Consensus        92 ~~~~~~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~d-d~LWr~L~~~~f  148 (229)
                      +|....|++..||+||+++||+|||++||+++++|||+|++++++ +.|||++|.++.
T Consensus         7 ~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~   64 (464)
T 3v7d_B            7 KDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN   64 (464)
T ss_dssp             --CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence            467788999999999999999999999999999999999999998 899999997654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.32  E-value=8.4e-13  Score=120.35  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=50.3

Q ss_pred             chhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCc
Q 027021           98 SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL  150 (229)
Q Consensus        98 ~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~  150 (229)
                      .+++.||+||+++||+||+++||+++++|||+||.+++|+.|||.+++++++.
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~   55 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPS   55 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGG
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCC
Confidence            46899999999999999999999999999999999999999999999988663

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=99.18  E-value=2.2e-11  Score=97.70  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhccC
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQWH  227 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~~~  227 (229)
                      ...++.+||++|.+||+++|+++|++++.|.|+||+|..+.|+++|+++|+.+|...
T Consensus        10 ~~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~   66 (144)
T 3gwr_A           10 PEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFGAA   66 (144)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999999999999999999999999754

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17

Probab=98.97  E-value=3.6e-10  Score=94.41  Aligned_cols=59  Identities=19%  Similarity=0.393  Sum_probs=55.0

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCc---------------eeEEeCCCccccchHHHHHHHHHhhc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADY---------------VKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~---------------V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ...+|..++.+||++|..||+++|+++|++++.               +.|+||+|..+.|+++|+++|+.+|.
T Consensus        10 d~~~I~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~~~l~G~~~I~~~~~~~f~   83 (170)
T 3cnx_A           10 DVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMA   83 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCCccccCHHHHHHHHHHHHc
Confidence            456799999999999999999999999998865               89999999999999999999999994

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.52  E-value=1.6e-08  Score=87.01  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=43.3

Q ss_pred             CchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHH
Q 027021           97 ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY  144 (229)
Q Consensus        97 ~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~  144 (229)
                      ...+++||+|++.+||+||+..|++++++|||+|++++.++.+|+.+.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~   53 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD   53 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEE
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeec
Confidence            355789999999999999999999999999999999998888898653

>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16

Probab=98.20  E-value=2.4e-06  Score=65.13  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ..+|..+..+|++++.++|+++|+++|++.+.+.+++++| .+.|+++|++.|+.+|+
T Consensus         4 ~~~I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-~~~G~~~i~~~~~~~f~   60 (122)
T 3b7c_A            4 TDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-FRNGWDETLAAYKKNYP   60 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-EEECHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-cccCHHHHHHHHHHhcC
Confidence            4578899999999999999999999999988999999987 79999999999999874

>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18

Probab=98.20  E-value=2.2e-06  Score=65.82  Aligned_cols=53  Identities=11%  Similarity=0.246  Sum_probs=47.2

Q ss_pred             HHhhHHHH---HHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhcc
Q 027021          172 VNVNAEFF---NIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       172 v~vn~~fY---~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~~  226 (229)
                      .+++..||   +++..+|+++|+++|.+++.+.|+| +|+.+.|+++|++ |+..|.-
T Consensus        14 ~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~-~~~~~~G~~~i~~-~~~~~~~   69 (129)
T 2rcd_A           14 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYG-AGENLYGIEEIRA-FRLARPS   69 (129)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEE-TTEEEESHHHHHH-HHHHSCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEEC-CCCccCCHHHHHH-HHHhcCC
Confidence            45566666   9999999999999999999999999 7888999999999 9999853

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}

Probab=98.02  E-value=3.8e-06  Score=66.86  Aligned_cols=54  Identities=9%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHH
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLG  221 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~  221 (229)
                      ...+|..+..+|++++..+|+++|+++|++++.+.|+||+|. +.|+++|+++|.
T Consensus         8 ~~~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g~-~~G~~~i~~~~~   61 (145)
T 3soy_A            8 VKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGH-ERGWSQIAENFY   61 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTEE-EESHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCCc-ccCHHHHHHHHH
Confidence            445688889999999999999999999999999999999986 599999999995

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.94  E-value=4e-06  Score=77.07  Aligned_cols=37  Identities=11%  Similarity=0.148  Sum_probs=29.7

Q ss_pred             CchhhhccHHHHHHHccCCC-hHHHHHHhhhcHHHHHH
Q 027021           97 ASMMEQLVPEITTHALSYLD-YPSLCRLSMTNSLMRKA  133 (229)
Q Consensus        97 ~~~l~~LP~EILl~ILSyLD-~~dL~~lsqvcR~~~~l  133 (229)
                      .+.+++||+||+.+||+||+ .+|+.++++|||+|+++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            46788999999999999999 99999999999999999

>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18

Probab=97.87  E-value=2.5e-05  Score=61.47  Aligned_cols=55  Identities=13%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ..+|..+..+|++++..+|+++|+++|.++..+.|+ ++|+.+.|+++|++ |...+
T Consensus        10 ~~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~-~~g~~l~G~~~I~a-~r~~~   64 (129)
T 2owp_A           10 VAQVQAAFVEYERALVENDIEAMNALFWHTPETVRY-GIAEVQHGGEAIRA-WRERC   64 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEE-CSSCEEESHHHHHH-HHHHS
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEe-CCCCccCCHHHHHH-HHHhc
Confidence            345777888889999999999999999999999999 66899999999999 98776

>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*

Probab=97.67  E-value=4.1e-05  Score=58.90  Aligned_cols=59  Identities=12%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             HHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC--CCccccchHHHHHHHHHhhcc
Q 027021          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       166 ~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP--gg~~l~G~daV~~sW~~if~~  226 (229)
                      ....+|...+.+|++++..||+++|+++|+++  +.+++|  .|..+.|++++++.|+.+|..
T Consensus        10 ~~~~~I~~l~~~~~~A~~~~D~~~~~~l~a~d--~~~~~~~~~g~~~~G~~~~r~~~~~~~~~   70 (143)
T 2ux0_A           10 VRKQEIIKITEQLIEAINNGDFEAYTKICDPG--LTSFEPEALGNLVEGMDFHKFYFENLLSK   70 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECGGGTTCEEEHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHhcCCC--cEEEeccCCCcEEEcHHHHHHHHHhhhhc
Confidence            34567899999999999999999999999754  777776  478899999999999999854

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}

Probab=97.52  E-value=0.00014  Score=55.81  Aligned_cols=58  Identities=12%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC-ccccchHHHHHHHHHhhcc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-ELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg-~~l~G~daV~~sW~~if~~  226 (229)
                      ...+|.....+|++++..||+++|+++|+++  ++++++++ ..+.|+++|++.|+.+|..
T Consensus         6 ~~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D--~v~~~~~~~~~~~G~~air~~~~~~~~~   64 (142)
T 3f7s_A            6 AESEIRQLIERWMQAVRDRDIPGIIAPYADD--IVAFDAIQALQFKGKSAYTAHWEMCMGM   64 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEE--EEEECSSSSSCEESHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHhhcCCC--EEEecCCCCccccCHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999764  77787765 4567999999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.43  E-value=4.7e-05  Score=70.11  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=31.5

Q ss_pred             hhccHHHHHHHccCC-ChHHHHHHhhhcHHHHHH
Q 027021          101 EQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKA  133 (229)
Q Consensus       101 ~~LP~EILl~ILSyL-D~~dL~~lsqvcR~~~~l  133 (229)
                      .+||+|++.+||+|| +.+|+.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            379999999999999 899999999999999998

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}

Probab=97.33  E-value=0.00021  Score=52.84  Aligned_cols=56  Identities=9%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ..+|.....+|++++..+|+++|..+|.++.  +.++|++..+.|+++|++.|+.+|.
T Consensus         5 ~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da--~~~~~~~~~~~G~~~i~~~~~~~~~   60 (129)
T 3hx8_A            5 KEAIEAANADFVKAYNSKDAAGVASKYMDDA--AAFPPDMARVDGRQNIQKLWQGAMD   60 (129)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECTTSCCEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCe--EEeCCCCCcccCHHHHHHHHHHHHh
Confidence            4577888999999999999999999998763  3378888899999999999998875

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27

Probab=97.29  E-value=0.00047  Score=51.43  Aligned_cols=56  Identities=11%  Similarity=0.107  Sum_probs=49.3

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ...+|..+..+|++++..+|++++..++.++  ++.++|++..+.|+++|++.|+..+
T Consensus         9 d~~~i~~~~~~~~~a~~~~D~~~~~~l~a~D--~v~~~~~~~~~~G~~ai~~~~~~~~   64 (135)
T 3d9r_A            9 ELAVIEAAAIAYLTAFNRADIPAVIATYTDD--GVLMGPGRPAAVGKDELAEVYLSVF   64 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEECTTSCCEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHhcCCC--EEEECCCCCcccCHHHHHHHHHHHH
Confidence            3467788899999999999999999999864  5667898888899999999999987

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=97.28  E-value=0.00016  Score=55.91  Aligned_cols=65  Identities=20%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             hccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCcccCCCCCCCcchHHHHHHHH
Q 027021          102 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRA  170 (229)
Q Consensus       102 ~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~~~~~~~~~WK~lY~~~rA  170 (229)
                      ..|-+||.-||...++.+|.++-.-|..+  +-.+|.||+++|.++|+...  +....+||++|...+.
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~--p~e~esWRelY~rl~~   76 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER--PEEYESWREMYLRLQD   76 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC--CCSSSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC--CCCCCCHHHHHHHHHH
Confidence            46889999999999999999999998744  45789999999999999543  4667899999997773

>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22

Probab=97.17  E-value=0.00025  Score=54.81  Aligned_cols=55  Identities=9%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      .+|..+..+|++++..+|+++++++|.++. |.+.+| |..+.|+++|++.|+.++.
T Consensus         3 ~~I~~l~~~~~~A~~~~D~d~~~~lfa~Da-v~~~~~-g~~~~G~~aI~~~~~~~~~   57 (142)
T 2gxf_A            3 QQLKDIISACDLAIQNEDFDTLMNYYSEDA-VLVVKP-GMIARGKEEIKKAFITIAN   57 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHTTSEEEEE-EEECSS-SCEEEHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhcCCCE-EEEcCC-CCcccCHHHHHHHHHHHHH
Confidence            468889999999999999999999998764 566677 6789999999999998875

>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}

Probab=96.86  E-value=0.00092  Score=52.38  Aligned_cols=57  Identities=11%  Similarity=0.085  Sum_probs=48.9

Q ss_pred             HHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       166 ~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ....+|.....+|++++..+|+++|..+|.++..+.  +|| ..+.|+++|++.|+.+|.
T Consensus        16 ~d~~~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~--~~g-~~~~Gr~aI~~~~~~~~~   72 (143)
T 4i4k_A           16 AALAAVAALPARIVAAWADHDADRFADVFAEDGTMI--LPG-LFRKGRENIRTHMAAAFA   72 (143)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEE--ETT-EEEESHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHhhcCceEE--eCC-CeecCHHHHHHHHHHHHh
Confidence            345678889999999999999999999999886554  565 778999999999999984

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16

Probab=96.84  E-value=0.0013  Score=51.07  Aligned_cols=55  Identities=9%  Similarity=-0.011  Sum_probs=47.9

Q ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHH-HHHHhhc
Q 027021          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYL-VLGNVAQ  225 (229)
Q Consensus       168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~-sW~~if~  225 (229)
                      ..+|..+..+|++++..+|+++|+++|+++  +..++++|. +.|++++++ .|...|.
T Consensus        29 ~~~i~~~~~~~~~A~~~~D~~~l~~l~a~D--a~~~~~~g~-~~g~~~~~~~~~~~~~~   84 (148)
T 3bb9_A           29 DSAAGNVVKQFHAALQMGNEAIVRQSLAAN--VQIYEGGKV-ERSLTEYANHHMLADMA   84 (148)
T ss_dssp             TSHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTEE-ECSHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHhhCCC--eEEEeCCCc-cCCHHHHHHHhHHHHHH
Confidence            457888999999999999999999999764  667788887 889999999 9998764

>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15

Probab=96.60  E-value=0.0032  Score=46.16  Aligned_cols=51  Identities=10%  Similarity=0.206  Sum_probs=44.1

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHH
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGN  222 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~  222 (229)
                      ..|...+.+|++++..+|+++++++|+++  +.++||+|.. .|.+++++.|..
T Consensus         6 ~~i~~l~~~~~~A~~~~D~~~l~~l~~~d--~~~~~~~G~~-~~~~~~i~~~~~   56 (123)
T 2r4i_A            6 DVILDCEKKLLTAIQNNDVESLEVLLHDD--LLFIIPSGET-VTKETDIAAYSS   56 (123)
T ss_dssp             HHHTHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECTTSCE-ECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHhhhCcC--eEEECCCCCC-ccHHHHHHHHhc
Confidence            56788999999999999999999999864  9999999865 588888888764

>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}

Probab=96.55  E-value=0.0045  Score=48.91  Aligned_cols=57  Identities=18%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       166 ~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ....+|-....+|++++..||++++.++|+++  ++-+|+|++.+ |.+++++.|+..+.
T Consensus        14 ~de~aI~~l~~~~~~A~~~gD~~~l~al~a~D--~v~~~~g~~~~-Gr~ai~a~~~~~~~   70 (139)
T 3rob_A           14 ADELAIRTVQYRWLEATRKFDRQVLSSLMTDD--VVFLTPGRLPF-GKEEFLAACEQNDQ   70 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEECTTSCCB-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHccCc--EEEECCCCCcc-CHHHHHHHHHHHHH
Confidence            45778889999999999999999999999985  44578877665 99999999988764

>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29

Probab=96.52  E-value=0.0021  Score=47.88  Aligned_cols=52  Identities=8%  Similarity=0.013  Sum_probs=42.7

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      .+..+||+++.++|+++|..+++++-.+.+ +|++..+.|.++|++.|+..|.
T Consensus         7 ~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~-~~g~~~~~G~~ai~~~~~~~~~   58 (123)
T 2k54_A            7 LPVQKQLEAYNARDIDAFMAWWADDCQYYA-FPATLLAGNAAEIRVRHIERFK   58 (123)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTEEEEEEEEE-TTTEEEEESHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHhhcCCceEEEc-CCCCcccCCHHHHHHHHHHHcC
Confidence            456789999999999999999988643333 5776778999999999998763

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}

Probab=96.49  E-value=0.0032  Score=49.30  Aligned_cols=57  Identities=7%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhhc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if~  225 (229)
                      ...+|.....+|++++..+|+++|..+|.++.  +.+.+ ++..+.|+++|++.|+.+|.
T Consensus        18 d~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Da--v~~~~~~~~~~~G~~~i~~~~~~~~~   75 (156)
T 3h51_A           18 EAREVAALFDTWNAALATGNPHKVADLYAPDG--VLLPTVSNEVRASREQIENYFEMFLT   75 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEE--EEECSSCSSCBCSHHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCE--EEecCCCCccccCHHHHHHHHHHHHh
Confidence            45778889999999999999999999998764  33333 46778999999999999875

>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28

Probab=95.98  E-value=0.0044  Score=49.27  Aligned_cols=57  Identities=7%  Similarity=0.031  Sum_probs=48.3

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ...+|.....+|++++..+|+++|..+|.++..+.  .+.|..+.|+++|++.|+.+|.
T Consensus        14 d~~aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~--~~~g~~~~Gr~aI~~~~~~~~~   70 (172)
T 3cu3_A           14 DESAIRAFHRQMIDAWNRGSGEGFAAPFSETADFI--TFEGTHLKGRKEIAAFHQQAFD   70 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE--CTTCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEE--eCCCCeEECHHHHHHHHHHHhh
Confidence            45678899999999999999999999998875443  3356889999999999999863

>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0

Probab=95.17  E-value=0.023  Score=43.37  Aligned_cols=50  Identities=4%  Similarity=0.027  Sum_probs=41.6

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHH
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLG  221 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~  221 (229)
                      .+|...+.+|++++..+|+++++++|++  .+.++|++|.++ +.++.++.++
T Consensus        14 ~~I~~l~~~~~~A~~~~D~~~l~~L~~~--d~~~v~~~G~~~-~~~~~l~~~~   63 (134)
T 3fsd_A           14 DDIAFYEERLRAAMLTGDLKGLETLLAD--DLAFVDHTGCVK-TKQTHLEPYR   63 (134)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHEEE--EEEEECTTSCEE-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHhhcCC--CEEEECCCCcCc-cHHHHHHHHH
Confidence            4578899999999999999999999976  489999999876 4555666665

>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...

Probab=94.71  E-value=0.061  Score=39.57  Aligned_cols=54  Identities=7%  Similarity=0.132  Sum_probs=43.3

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC-CccccchHHHHHHHHHhhc
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg-g~~l~G~daV~~sW~~if~  225 (229)
                      ++..+..+||+++..+|++++..+++.+  ++...|+ +..+.|.++|++-|+.++.
T Consensus         8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D--~~~~~p~~~~~~~G~~~i~~~~~~~~~   62 (131)
T 1oh0_A            8 EVQGLMARYIELVDVGDIEAIVQMYADD--ATVEDPFGQPPIHGREQIAAFYRQGLG   62 (131)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEESSTTSCCEEHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCC--EEEEcCCCCCCcccHHHHHHHHHHHhh
Confidence            4455667899999999999999998766  4444564 4688999999999998874

>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A

Probab=94.54  E-value=0.069  Score=38.26  Aligned_cols=55  Identities=11%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhhc
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if~  225 (229)
                      .++.....+||+++..+|++++..+++++  ++-..| ++..+.|.++|++-|+..+.
T Consensus         5 ~~~~~~v~~~~~a~~~~D~~~~~~l~a~D--~~~~~~~~~~~~~G~~~i~~~~~~~~~   60 (125)
T 1ohp_A            5 EHMTAVVQRYVAALNAGDLDGIVALFADD--ATVENPVGSEPRSGTAAIREFYANSLK   60 (125)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHTTEEEE--EEEESSTTSCCEESHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHcCCC--eEEECCCCCCCccCHHHHHHHHHHhcc
Confidence            34556778899999999999999998765  344445 56789999999999998774

>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}

Probab=94.27  E-value=0.058  Score=42.43  Aligned_cols=56  Identities=11%  Similarity=0.217  Sum_probs=46.9

Q ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       168 ~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ..+|-+...+|.+++..+|+++++.++.++.  ..++..|..+.|+++|++.|+.+|.
T Consensus         5 ~~aI~~l~~~~~~A~~~~D~d~~~~lf~~Da--~~~~~~G~~~~Gr~aI~~~~~~~~~   60 (146)
T 3gzr_A            5 TDAIQALIQAYFTAWNTNAPERFAEIFWPDG--SWVNVVGMHWRGRDQIVFAHTAFLK   60 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGSGGGEEEEE--EEECTTCCEEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHhhccCCe--EEEcCCCCeeeCHHHHHHHHHHHhh
Confidence            4567788899999999999999999998774  3344556889999999999998874

>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}

Probab=93.77  E-value=0.046  Score=42.80  Aligned_cols=64  Identities=13%  Similarity=0.181  Sum_probs=45.2

Q ss_pred             CcchHHHHHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       159 ~~WK~lY~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ..-..+|.+-.++-.+..+||+++..+|+++|..+.+++  ++-..|.|..+.|.++|++-|+.++
T Consensus        10 ~~~~~~~~~~~~~~~lv~~~~~a~~~~D~~~l~~l~a~D--~v~~~p~g~~~~G~e~i~~~~~~~~   73 (151)
T 3f7x_A           10 HHHENLYFQGMTATELVNAYYAAFNAGDMPAFLALLSED--VIHDINQGERQMGKARFAAFMEKMN   73 (151)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHTCHHHHHHTEEEE--EEEECTTSCEEESHHHHHHHHHHHH
T ss_pred             cccccceecCHHHHHHHHHHHHHHHcCCHHHHHHhcCCC--EEEECCCCCCcCCHHHHHHHHHHHH
Confidence            344567777777777888999999999999999998776  3333356788999999999988765

>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A

Probab=93.50  E-value=0.13  Score=38.54  Aligned_cols=53  Identities=6%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCc-c-------ccchHHHHHHHHHhhc
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-L-------FSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~-~-------l~G~daV~~sW~~if~  225 (229)
                      +.....+||+++..+|++++..+++++  ++-..|.+. .       +.|.++|++-|+..+.
T Consensus         9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D--~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~   69 (139)
T 2a15_A            9 ALIASQSSWRCVQAHDREGWLALMADD--VVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIA   69 (139)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhcCCC--EEEECCCCCCccCCCCceeecHHHHHHHHHHhcc
Confidence            445667899999999999999999876  333345332 2       7999999999998763

>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}

Probab=93.36  E-value=0.13  Score=42.03  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=42.1

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC--CccccchHHHHHHHHHhh
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS--GELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg--g~~l~G~daV~~sW~~if  224 (229)
                      ..+.....+||+++-++|+++|+.+++.+- |...-++  +..+.|.++|++-|+.++
T Consensus        10 ~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~-v~~~p~~~p~~~~~Greai~~~f~~~~   66 (156)
T 3g16_A           10 AAMEKVIRTYYDGCNEADEAKMIACFVPEA-VHYFPAGMYGGAFRGAAQIAHRWRTAV   66 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEE-EEECBTTSTTSCEESHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHhcCCCE-EEecCCCCCCCCccCHHHHHHHHHHHH
Confidence            345566778999999999999999998762 2222232  567889999999999876

>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8

Probab=93.29  E-value=0.12  Score=39.58  Aligned_cols=50  Identities=8%  Similarity=0.064  Sum_probs=41.1

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ....+||+++..+|++++..+++++  ++...+++..+.|.++|++-|+.++
T Consensus        19 ~~v~~f~~a~~~gD~~~l~~l~a~D--~v~~~~~~~~~~G~~~i~~~~~~~~   68 (149)
T 2bng_A           19 RAVEAFLNALQNEDFDTVDAALGDD--LVYENVGFSRIRGGRRTATLLRRMQ   68 (149)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTTEEEECHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHcCCC--EEEEeCCCCCccCHHHHHHHHHHHH
Confidence            3456799999999999999999766  4444577778899999999998765

>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}

Probab=93.20  E-value=0.057  Score=40.18  Aligned_cols=51  Identities=8%  Similarity=0.089  Sum_probs=40.3

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC------C--CccccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA------S--GELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP------g--g~~l~G~daV~~sW~~if  224 (229)
                      .....+||+++..+|++++..+++++-  +-..|      +  +..+.|.++|++-|+.++
T Consensus        11 ~~~~~~~~~a~n~~D~~~l~~l~a~D~--v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~   69 (122)
T 3h3h_A           11 QQFSREWIDAWNAHDLDAILSHYADGF--EMSSPMIVQIAGEPSGRLRGKEQVGAYWREAL   69 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECHHHHHHHC-CCCEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHhcCCCE--EEECCCcccccCCCCCcEEcHHHHHHHHHHHH
Confidence            355678999999999999999998773  22223      1  367899999999999876

>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=93.20  E-value=0.064  Score=39.51  Aligned_cols=51  Identities=6%  Similarity=0.034  Sum_probs=40.1

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++..+|++++..++++ |.+..-.|++....|.+++++-|+..+
T Consensus         6 ~~v~~~~~a~n~~D~~~~~~~~a~-D~v~h~~~~~~~~~G~~~~~~~~~~~~   56 (117)
T 3ff2_A            6 ETAKAMIAAYNAQDVDTYVSYMTD-DACEANYRGDVVREGKEGTRSGLAAAF   56 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEE-EEEEEETTSCEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHhcCC-cEEEEeCCCCccccCHHHHHHHHHHHH
Confidence            345679999999999999999874 344443345667899999999998876

>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*

Probab=92.96  E-value=0.17  Score=38.42  Aligned_cols=50  Identities=10%  Similarity=0.151  Sum_probs=39.8

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++..+|++++..+++++-  +-..|+...+.|.++|++-|+.++
T Consensus        26 ~~v~~~~~a~~~~D~~~l~~l~a~D~--~~~~~~~~~~~G~~~i~~~~~~~~   75 (149)
T 1nww_A           26 KIVLEFMDALTSNDAAKLIEYFAEDT--MYQNMPLPPAYGRDAVEQTLAGLF   75 (149)
T ss_dssp             HHHHHHHHHGGGCCHHHHHTTBCSSC--EEEETTSCCEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHhCCCE--EEEcCCCCCccCHHHHHHHHHHHH
Confidence            45567999999999999999988653  333356567899999999998876

>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10

Probab=92.56  E-value=0.17  Score=38.99  Aligned_cols=53  Identities=9%  Similarity=-0.029  Sum_probs=42.8

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC---ccccchHHHHHHHHHhh
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG---ELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg---~~l~G~daV~~sW~~if  224 (229)
                      .+.++..+||+++..||++.|..+++++  ++...|++   ..+.|.++|++-|+.+.
T Consensus        13 ~~~~~~~~f~~A~~~gD~~~l~~lla~D--~v~~~pg~~~~g~~~G~~~v~~~~~~~~   68 (134)
T 3dmc_A           13 VAHQGFEFFTQGLATGEWQKFLDMLTED--FTFWFPMGEFHGLNVGKERAKEFFTYVS   68 (134)
T ss_dssp             HHHHHHHHHHHHHHHSCCHHHHTTEEEE--EEEEESSGGGBEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHcCCC--EEEEecCCCCCccchhHHHHHHHHHHHH
Confidence            3445677899999999999999998876  55566776   46889999999887765

>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}

Probab=91.77  E-value=0.15  Score=39.67  Aligned_cols=51  Identities=10%  Similarity=0.093  Sum_probs=41.2

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ++..+||+++.++|+++|.++..++- |....+.|..+.|.++|++-|+.++
T Consensus        29 eiv~~y~~A~n~~D~d~~~~l~a~D~-v~~d~~~g~~~~Greai~~~~~~~~   79 (158)
T 4h3u_A           29 EIVTAWAAAWTGTNPNALGTLFAADG-TYVDHAIGATMTGREQISGWKARTD   79 (158)
T ss_dssp             HHHHHHHHHHHSSCHHHHHTTEEEEE-EEEETTTTEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcccc-eEeccCCCceEecchhhhhhhhhhh
Confidence            45678999999999999999987662 4444566788999999999888765

>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}

Probab=91.69  E-value=0.17  Score=37.33  Aligned_cols=50  Identities=6%  Similarity=0.083  Sum_probs=40.3

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      +...+||+++.++|+++|..+.++  .+....+|...+.|.+++++-++.++
T Consensus         4 ~~v~~~~~a~~~gD~~~~~~~lad--Dv~w~~~g~~~~~G~~~~~~~~~~~~   53 (112)
T 3f14_A            4 TTHYSIAQHFSSGDFPAVYACFND--IIEWNIIGNQVVKGKADVIDFCNKML   53 (112)
T ss_dssp             HHHHHHHHHHHTTCGGGTGGGEEE--EEEEEETTTEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHhcCC--ceEEEEcCCccEecHHHHHHHHHHHH
Confidence            356789999999999999997663  36655578888999999998887664

>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9

Probab=91.28  E-value=0.19  Score=37.11  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC-------ccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-------ELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg-------~~l~G~daV~~sW~~if  224 (229)
                      ++..+||+++..+|++++..+++.+  ++...|+|       ..+.|.++|++-|+.++
T Consensus         7 ~~v~~~~~a~~~~d~~~~~~l~a~D--~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~   63 (132)
T 3ebt_A            7 QTVRESYEAFHRRDLPGVLAALAPD--VRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVP   63 (132)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEEE--EEEEECGGGGGGTCCEEEEHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhccCHHHHHHhcCCC--EEEEeCCCCCCcccCCcCcCHHHHHHHHHHHH
Confidence            4556899999999999999988654  44444543       57889999999998876

>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}

Probab=90.35  E-value=0.31  Score=37.69  Aligned_cols=65  Identities=9%  Similarity=0.149  Sum_probs=42.8

Q ss_pred             CCcchHHHHHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCc----cccchHHHHHHHHHhh
Q 027021          158 VNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE----LFSGYDSFYLVLGNVA  224 (229)
Q Consensus       158 ~~~WK~lY~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~----~l~G~daV~~sW~~if  224 (229)
                      .++-..+|.....-..+..+||+++..||++++..+++.+  ++-..|++.    .+.|.++|++-++.++
T Consensus         9 ~~~~~~~~~~~~~n~~~v~~~~~a~~~gD~~~l~~l~a~D--~v~~~p~~~~~~g~~~G~~~v~~~~~~~~   77 (148)
T 3g8z_A            9 HHHHENLYFQGMNTIDIAKSYITAIQTGDHATLGSIISPD--VIWHQPGNHQFSGTHRGMAVVGPMLGKMM   77 (148)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEECSSSTTCEEEESHHHHHHHHHHHH
T ss_pred             cccccccccCCcchHHHHHHHHHHHhcCCHHHHHHHcCCC--EEEEcCCCCCCCceEcCHHHHHHHHHHHH
Confidence            3445567777666677888999999999999999998765  444446543    3689999999888765

>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25

Probab=90.10  E-value=0.3  Score=38.18  Aligned_cols=56  Identities=7%  Similarity=-0.011  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       166 ~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ....+|.....+|++++-.+|.+.+..+|.++..+  .+|+ ..+.|+++|++.|+..+
T Consensus        11 ~d~~~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~--~~~g-~~~~G~~~i~~~~~~~~   66 (170)
T 2chc_A           11 IEILRIQALCARYCLTINTQDGEGWAGCFTEDGAF--EFDG-WVIRGRPALREYADAHA   66 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEE--EETT-EEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHhcccCcEEE--EeCC-CCcCCHHHHHHHHHHhh
Confidence            35677888999999999999999999999876443  4565 57789999999998865

>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}

Probab=89.96  E-value=0.42  Score=35.55  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++..+|++++..+.+++  +.-.-|++..+.|.+++++-|+.+.
T Consensus        12 ~~v~~~~~a~~~~D~~~~~~l~a~D--~~~~~p~~~~~~G~~~~~~~~~~~~   61 (140)
T 3i0y_A           12 GLVQAYYEAFNRGDWDAMLAFLAED--VAHDLNQGPREIGRAAFASFLQRMN   61 (140)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTEEEE--EEEECTTSCEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHcCCc--EEEEcCCCCceEcHHHHHHHHHHHh
Confidence            4567899999999999999998766  3322345778899999999887754

>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11

Probab=89.85  E-value=0.74  Score=35.37  Aligned_cols=51  Identities=4%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCcc----ccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL----FSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~----l~G~daV~~sW~~if  224 (229)
                      .....+||+++..+|++++..+++++  +....|++..    +.|.++|++-|+.+.
T Consensus        32 ~~~v~~~~~a~~~gD~~~l~~l~a~D--~~~~~~~~~~~~g~~~G~~~i~~~~~~~~   86 (156)
T 1tuh_A           32 AETVRRGYAAFNSGDMKTLTELFDEN--ASWHTPGRSRIAGDHKGREAIFAQFGRYG   86 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEECSSSTTCEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhcCCC--EEEEccCCCCccceEcCHHHHHHHHHHHH
Confidence            34567899999999999999999766  5555566543    689999999998754

>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20

Probab=89.77  E-value=0.39  Score=36.59  Aligned_cols=50  Identities=10%  Similarity=0.038  Sum_probs=39.6

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNV  223 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~i  223 (229)
                      .+..+||+++.++|+++|..+.+++ -+...++.+..+.|.+++++-+...
T Consensus         9 ~~v~~~~~a~~~~D~~~l~~llaeD-~v~~~P~~~~~~~Gr~~~~~~~~~~   58 (128)
T 3en8_A            9 EALNAHWQASAAGDFDAEHDIYDDD-AICDYPQSGERILGRMNLQALRSHH   58 (128)
T ss_dssp             HHHHHHHHHHHHTCHHHHTTTEEEE-EEEEETTTTEEEESHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHhcCCC-EEEECCCCCCEEECHHHHHHHHHHC
Confidence            4556899999999999999988774 4455555688899999999876553

>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=89.49  E-value=0.7  Score=34.43  Aligned_cols=48  Identities=8%  Similarity=0.156  Sum_probs=37.9

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC----CCccccchHHHHHHHHH
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA----SGELFSGYDSFYLVLGN  222 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP----gg~~l~G~daV~~sW~~  222 (229)
                      .+..+||+++..+|++++..+++.+  ++-..|    .|..+.|.++|++-|+.
T Consensus        21 ~~v~~~~~a~~~~D~~~l~~l~a~D--~v~~~p~~~~~g~~~~G~~~i~~~~~~   72 (129)
T 3fh1_A           21 EIMRRFNDVFQLHDPAALPELIAEE--CVIENTVPAPDGARHAGRQACVQLWSA   72 (129)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHEEEE--EEEECSCSTTTCCEEESHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHhcCCC--EEEECCCCCCCCCcccCHHHHHHHHHH
Confidence            4556899999999999999999765  333333    36677899999999987

>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0

Probab=89.00  E-value=0.53  Score=34.84  Aligned_cols=50  Identities=10%  Similarity=0.172  Sum_probs=38.9

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCC----ccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg----~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++..+|++++..+++.+  ++...|++    ..+.|.++|++-|+.++
T Consensus         9 ~~v~~~~~a~~~~d~~~~~~l~a~D--~~~~~p~~~p~~g~~~G~~~i~~~~~~~~   62 (135)
T 3fgy_A            9 QIVKDFFAAMGRGDKKGLLAVSAED--IEWIIPGEWPLAGTHRGHAALAALLQKAS   62 (135)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTEEEE--EEEEECSSSTTCEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHhcCCC--eEEEEcCCCccceEEeCHHHHHHHHHHHH
Confidence            4556899999999999999988766  44444542    36789999999998876

>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20

Probab=88.86  E-value=0.57  Score=35.85  Aligned_cols=51  Identities=8%  Similarity=0.045  Sum_probs=39.3

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC-------CccccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-------GELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg-------g~~l~G~daV~~sW~~if  224 (229)
                      .....+||+++.+||+++|..+.+++  ++...|+       .....|.++|++-|+.+.
T Consensus         7 ~~~v~~~~~a~~~gD~~~l~~l~a~D--v~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~   64 (143)
T 3dm8_A            7 WRFSRALHRALNDRQTEELATIIDDN--IDWAIYGPIDMFPFFGARQGKAAVLEVCRQIA   64 (143)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHEEEE--EEEEEESCTTTCTTCEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHhcCCC--eEEEecCCCCcCCCCccccCHHHHHHHHHHHH
Confidence            35667899999999999999998876  3333333       235789999999998765

>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}

Probab=88.24  E-value=0.94  Score=35.47  Aligned_cols=51  Identities=8%  Similarity=0.017  Sum_probs=38.9

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ..+..+||+++..+|+++|..+++.+  ++-..|......|.+++++-|+.++
T Consensus        37 ~~~v~~~~~a~~~~d~~~l~~~~a~D--~v~~~p~~g~~~G~e~~~~~~~~~~   87 (159)
T 3k0z_A           37 VHAAQRFYAFWDTGKEELIPQTVTEN--FFDHTLPKGRPQGTEGLKFAAQNFR   87 (159)
T ss_dssp             HHHHHHHHHHHHHCCGGGHHHHEEEE--EEESSCCTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHcCCC--eEEecCCCCCCCCHHHHHHHHHHHH
Confidence            34556899999999999999998754  3323344347789999999888776

>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}

Probab=87.66  E-value=0.64  Score=34.80  Aligned_cols=49  Identities=12%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ++..+||+++..||++++..+.+.+  ++...|+| .+.|.++|.+-+..++
T Consensus        10 ~~v~~f~~A~~~gD~~~l~~lla~D--vv~~~~~g-~~~G~~~v~~~~~~~~   58 (114)
T 3f40_A           10 DLVLEFIHALNTENFPAAKKRLNEN--FTFNGPMG-HREGSERYMNDMEKMK   58 (114)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTEEEE--EEEEETTE-EEESHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHhcCCC--eEEECCCC-cccCHHHHHHHHHHHH
Confidence            3556899999999999999998754  66656665 5689999999877654

>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=87.22  E-value=1.1  Score=33.97  Aligned_cols=55  Identities=9%  Similarity=0.132  Sum_probs=44.5

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHh
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNV  223 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~i  223 (229)
                      ...+|.+...+|.+++-.+|.+.+..++.++..  -.+|+|....|+++|++.|+..
T Consensus        17 d~~~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~--~~~~~g~~~~G~~~i~~~~~~~   71 (155)
T 2rfr_A           17 DREEIRELIARYGPLADSGDAEALSELWVEDGE--YAVVGFATAKGRAAIAALIDGQ   71 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEE--EEETTSCCEESHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHhhcCCceE--EEcCCCccccCHHHHHHHHHhc
Confidence            456788888899999999999999999987643  3467765548999999988765

>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=86.94  E-value=0.86  Score=35.26  Aligned_cols=56  Identities=9%  Similarity=0.034  Sum_probs=44.8

Q ss_pred             HHHHHHHhhHHHHHHHHh-cChHHHHHhhhcCCceeEEeCCCc--cccchHHHHHHHHHhh
Q 027021          167 ATRAVVNVNAEFFNIIRE-RSLPAMSRFWLNADYVKCIHASGE--LFSGYDSFYLVLGNVA  224 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~-gdl~aM~~iW~~~d~V~CIHPgg~--~l~G~daV~~sW~~if  224 (229)
                      .+.+|.....+|++++-. +|.+.+..+|.++..+  .++++.  .+.|+++|++.|+..+
T Consensus        26 d~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~--~~~~~g~~~~~G~~~i~~~~~~~~   84 (163)
T 3b8l_A           26 DRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVF--DLSGIGLTPQVGHAGIREFFTNVF   84 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEE--ECGGGTCCCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEE--EecCCCCCCccCHHHHHHHHHHhh
Confidence            567788888999999999 9999999999876432  344333  7889999999998754

>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10

Probab=86.92  E-value=0.66  Score=34.77  Aligned_cols=51  Identities=12%  Similarity=0.281  Sum_probs=39.1

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC---CC-c-cccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA---SG-E-LFSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP---gg-~-~l~G~daV~~sW~~if  224 (229)
                      .....+||+++..+|++++..+++++  ++-..|   .| . .+.|.++|++-|+.++
T Consensus        13 ~~~v~~~~~a~~~~D~~~l~~l~a~D--~~~~~p~~~~g~~~~~~G~~~i~~~~~~~~   68 (150)
T 1s5a_A           13 CETLRKFMAYMLEKDMKSWTELWDEN--AVFEFPYAPEGSPKRIEGKAAIYDYIKDYP   68 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEE--EEEECTTCCTTSCSEEESHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHhCCCC--EEEEeecCCCCCCccccCHHHHHHHHHHhh
Confidence            35567899999999999999998765  444444   23 2 5899999999888765

>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}

Probab=86.89  E-value=0.56  Score=36.61  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhhc
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if~  225 (229)
                      ..+...+||+++..+|++++..+++++  ++-.-| .+..+.|.++|.+-|..++.
T Consensus        11 ~~~~~~~~~~a~~~~D~~~l~~l~a~D--~v~~~P~~~~~~~G~~~v~~~~~~~~~   64 (143)
T 3mso_A           11 AAATLAEWHGLIARRDLSGLPRLLHPD--AVFRSPMAHKPYAGAPVVSMILNTVLT   64 (143)
T ss_dssp             HHHHHHHHHHHHHTTCCTTGGGGEEEE--EEEECSSCSSCEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHhcCCC--EEEECCCCCCCccCHHHHHHHHHHHHh
Confidence            345667899999999999999999876  333334 35688999999999988763

>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}

Probab=86.57  E-value=0.58  Score=36.42  Aligned_cols=50  Identities=12%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++.++|+++|..+++++- + -.-+.+..+.|.+++++-|+.++
T Consensus        22 ~~v~~~~~a~n~~D~~~l~~l~a~D~-v-~~~~~~~~~~G~e~i~~~~~~~~   71 (150)
T 3f8h_A           22 DTIARYFDAFNAGDTDGMLACLSEDV-A-HHVNEGNIRVGKEKFAAFCAHMS   71 (150)
T ss_dssp             CHHHHHHHHHHHTCHHHHHTTEEEEE-E-EEEETTEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHcCCCe-E-EeCCCCcceeCHHHHHHHHHHHH
Confidence            35567999999999999999987762 3 22235567899999999888765

>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}

Probab=86.24  E-value=0.67  Score=36.18  Aligned_cols=61  Identities=8%  Similarity=0.183  Sum_probs=40.4

Q ss_pred             CcchHHHHHHHHHHHhhHHHHHHHHhcCh-HHHHHhhhcCCceeEEeCCC---ccccchHHHHHHHH
Q 027021          159 NGWKAYYAATRAVVNVNAEFFNIIRERSL-PAMSRFWLNADYVKCIHASG---ELFSGYDSFYLVLG  221 (229)
Q Consensus       159 ~~WK~lY~~~rAIv~vn~~fY~aIr~gdl-~aM~~iW~~~d~V~CIHPgg---~~l~G~daV~~sW~  221 (229)
                      ..-..+|.+...+..+..+|++++.++|. ++++.+++.+  ++-..|.+   ....|.+|+++-++
T Consensus        10 ~~~~~~~~~~~~~kevv~r~~e~~~~gd~~~~l~~lya~D--~v~~dp~~~~~~~~~G~eai~~~~~   74 (136)
T 3hk4_A           10 HHHENLYFQGMTIAEIAKDFTELLKQGDNAGAAEKYNADD--IASYEAMEGPMAVSHGKEALRQKSQ   74 (136)
T ss_dssp             ---------CCCHHHHHHHHHHHHHTTCHHHHHHHHEEEE--EEEECSSCSTTSEEESHHHHHHHHH
T ss_pred             cchhhhHhccccHHHHHHHHHHHHHcCCcHHHHHHHCCCC--EEEEcCCCCCccccCCHHHHHHHHH
Confidence            34456788877888888999999999997 5789999876  44445532   25789999998544

>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}

Probab=85.28  E-value=0.82  Score=36.37  Aligned_cols=53  Identities=19%  Similarity=0.228  Sum_probs=41.5

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhh
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if  224 (229)
                      ++.+...+|++++..||++++..+++++  ++-.-| ....+.|.++|.+-|..++
T Consensus        21 ~~~~~l~~f~~a~~~gD~~aL~~LlA~D--vv~~~P~~~~~~~G~~av~~~~~~~~   74 (148)
T 3f8x_A           21 AVQSGLQEWHRIIAEADWERLPDLLAED--VVFSNPSTFDPYHGKGPLMVILPAVF   74 (148)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGSGGGEEEE--EEEECSSCSSCEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCC--EEEECCCCCCCcCCHHHHHHHHHHHH
Confidence            3445677899999999999999999876  222224 4567889999999999876

>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10

Probab=85.08  E-value=0.74  Score=34.42  Aligned_cols=50  Identities=12%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC----CccccchHHHHH-HHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS----GELFSGYDSFYL-VLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg----g~~l~G~daV~~-sW~~if  224 (229)
                      ++..+||+++..||++++..+.+.+  ++...|+    +..+.|.++|++ -|+.++
T Consensus        16 ~~v~~~~~a~~~gD~~~~~~l~a~D--~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~   70 (140)
T 3ec9_A           16 QIVADHYAASDRHDPAAMMADIAPA--IEWTEMAGFPCAGTYRSADEIVRNVFRRLG   70 (140)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEEE--EEEEECTTSTTCEEECSHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHhcCCC--eEEEEcCCCccceEEcCHHHHHHHHHHHHH
Confidence            4556899999999999999987765  3333343    346789999975 477654

>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=82.41  E-value=2.2  Score=32.42  Aligned_cols=49  Identities=6%  Similarity=0.052  Sum_probs=38.1

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++..+|++++..+++.+  ++-..| .....|.+++++-|+.++
T Consensus         8 ~~v~~~~~a~~~~d~~~~~~~~a~D--~v~~~~-~~~~~G~~~~~~~~~~~~   56 (152)
T 2gex_A            8 ERCLEMVAAWNRWDVSGVVAHWAPD--VVHYDD-EDKPVSAEEVVRRMNSAV   56 (152)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEEE--EEEECT-TSCEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHcCCC--eEEeCC-CCCCCCHHHHHHHHHHHH
Confidence            4557899999999999999998765  333344 346789999999998876

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}

Probab=81.45  E-value=2.2  Score=36.98  Aligned_cols=57  Identities=5%  Similarity=0.053  Sum_probs=46.0

Q ss_pred             HHHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhh
Q 027021          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       166 ~~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if  224 (229)
                      .....+.....+||+++..+|++++..+++++  ++-..| +...+.|.++|++-|+.++
T Consensus       135 ~~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D--~v~~~P~~~~~~~G~~ai~~~~~~~~  192 (283)
T 3rga_A          135 PDEERRKELAREHCLRINDGDVDGLLKLYSPR--IRFEDPVGSWTRTGLEALRAHATMAV  192 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEE--EEEESSTTSCEEESHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHhcCCC--eEEECCCCCCcccCHHHHHHHHHHhh
Confidence            44556677888999999999999999999877  333446 4567899999999998876

>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7

Probab=80.92  E-value=2.2  Score=33.52  Aligned_cols=49  Identities=16%  Similarity=0.390  Sum_probs=41.9

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC--CCccccchHHHH
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYDSFY  217 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP--gg~~l~G~daV~  217 (229)
                      ...+|.....++.+++..||+++++.+-  ++.++++.|  .|..+.|.++++
T Consensus        10 ~~~eI~~~~~~~~~Ai~~gD~~~~~~l~--~~dv~~Fd~~~~g~~~~g~~~~r   60 (143)
T 2f86_B           10 QKQDIVRVTQTLLDAISCKDFETYTRLC--DTSMTCFEPEALGNLIEGIEFHR   60 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHE--EEEEEEECGGGTTCCEETTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHhc--CCCEEEEccCcCCccccCHHHHH
Confidence            4467889999999999999999999994  466888877  688899999877

>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10

Probab=80.20  E-value=1.2  Score=34.84  Aligned_cols=49  Identities=6%  Similarity=0.119  Sum_probs=37.1

Q ss_pred             hhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC---C--ccccchHHHHHHHHHhh
Q 027021          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS---G--ELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       174 vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg---g--~~l~G~daV~~sW~~if  224 (229)
                      +..+||+++.++|++++..+.+++  ++-..|+   |  ..+.|.++|++-|+.++
T Consensus        28 ~v~~~~~a~~~~D~~~l~~l~a~D--~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~   81 (163)
T 1z1s_A           28 ILVHSLRLLENGDARGWCDLFHPE--GVLEFPYAPPGWKTRFEGRETIWAHMRLFP   81 (163)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTEEEE--EEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred             HHHHHHHHHHCCCHHHHHHHCCCC--EEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence            446799999999999999998876  3333342   2  35789999999887665

>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*

Probab=80.06  E-value=0.68  Score=35.72  Aligned_cols=50  Identities=8%  Similarity=0.064  Sum_probs=37.4

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCc-cccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-LFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~-~l~G~daV~~sW~~if  224 (229)
                      .+..+||+++.++|++++..+++.+ .+. ..|+.. .+.|.+++++-|+.++
T Consensus        15 ~~v~~~~~a~~~~d~~~~~~~~a~D-~v~-~~p~~~~~~~G~~~~~~~~~~~~   65 (153)
T 2f99_A           15 AAVRRMVEAYNTGKTDDVADYIHPE-YMN-PGTLEFTSLRGPELFAINVAWVK   65 (153)
T ss_dssp             HHHHHHHHHHHHCCCTTGGGTEEEE-EEC-GGGTTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHhcCCC-eEE-ecCCCCCCCCCHHHHHHHHHHHH
Confidence            3446799999999999999998875 232 234433 3589999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-09
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-09
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-07
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-06
d3cnxa1	153	d.17.4.17 (A:5-157) Uncharacterized protein SAV467	0.002

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVN- 159
            + +  I  + LSYLD  SLC   +      +  +D   WK L  +    +         
Sbjct: 16  ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAER 75

Query: 160 -GWKAYYAATRA 170
            GW  Y    + 
Sbjct: 76  RGWGQYLFKNKP 87

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 99  MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLE------- 151
            +  L  E+  + LS+L+   L + + T    R  A D+  W+    ++   E       
Sbjct: 18  FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRR 77

Query: 152 --QDSVIPVNGWKAYY 165
                    + WK+ Y
Sbjct: 78  KVIKPGFIHSPWKSAY 93

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 12/100 (12%)

Query: 101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNA-WKALYHKD-FTLEQDSVIPV 158
             L  EI+    +YL +  +      +    K      + WK L   + F   +      
Sbjct: 7   TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLN 66

Query: 159 NGWKAYYAATRAVVNVNAEFF--NIIRERSLPAMSRFWLN 196
                 Y        +   F     I +         W N
Sbjct: 67  LKLSQKYPKLSQQDRLRLSFLENIFILKN--------WYN 98

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 6e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW 140
           + L  E+     S L  P L ++S       + A+D++ W
Sbjct: 2   DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 15/67 (22%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLN---------------ADYVKCIHASGELF 210
                V   N  F+  +       +S  WL                A  V C+H    + 
Sbjct: 4   TDVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVL 63

Query: 211 SGYDSFY 217
           SG     
Sbjct: 64  SGRGEVL 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.62
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.6
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d3cnxa1	153	Uncharacterized protein SAV4671 {Streptomyces aver	99.15
d2owpa1	128	Hypothetical protein BxeB1374 {Burkholderia xenovo	98.16
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	97.42
d3b7ca1	121	Uncharacterized protein SO0125 {Shewanella oneiden	97.42
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	97.38
d2ux0a1	135	Association domain of calcium/calmodulin-dependent	97.34
d2rcda1	127	Uncharacterized protein ECA3500 {Pectobacterium at	97.34
d2f86b1	129	Association domain of calcium/calmodulin-dependent	96.63
d3cu3a1	162	Uncharacterized protein NpunR1993 {Nostoc punctifo	96.3
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	95.63
d1oh0a_	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	95.11
d2a15a1	132	Hypothetical protein Rv0760c {Mycobacterium tuberc	94.58
d3en8a1	127	Uncharacterized protein BxeB2092 {Burkholderia xen	94.01
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	93.38
d1ohpa1	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	93.29
d2k54a1	123	Uncharacterized protein Atu0742 {Agrobacterium tum	93.14
d2bnga1	132	Uncharacterized protein Mb2760 {Mycobacterium tube	93.1
d3ebta1	131	Uncharacterized protein BPSS0132 {Burkholderia pse	92.75
d3dm8a1	135	Uncharacterized protein Rpa4348 {Rhodopseudomonas	90.74
d1tuha_	131	Hypothetical protein egc068 from a soil-derived mo	90.31
d1nwwa_	145	Limonene-1,2-epoxide hydrolase {Rhodococcus erythr	90.11
d1z1sa1	129	Uncharacterized protein PA3332 {Pseudomonas aerugi	89.45
d1s5aa_	139	Hypothetical protein YesE {Bacillus subtilis [TaxI	89.08
d1m98a2	142	Orange carotenoid protein, C-terminal domain {Cyan	88.52
d3dmca1	133	Uncharacterized protein Ava2261 {Anabaena variabil	88.35
d2gexa1	138	Nogalamycin biosynthesis protein SnoL {Streptomyce	86.56
d2f99a1	140	Aklanonic acid methyl ester cyclase, AknH {Strepto	84.36

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.1e-19  Score=133.88  Aligned_cols=82  Identities=21%  Similarity=0.263  Sum_probs=69.7

Q ss_pred             hcccCCcCchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCccc---------CCCCCCCc
Q 027021           90 VAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ---------DSVIPVNG  160 (229)
Q Consensus        90 ~~~~~~~~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~~~---------~~~~~~~~  160 (229)
                      ..+|....|++..||+||+.+||+|||+.||+++++|||+|+++++++.+||++|++++....         .......+
T Consensus         9 ~~~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~   88 (102)
T d2ovrb1           9 VIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP   88 (102)
T ss_dssp             HHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCH
T ss_pred             HcCchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcC
Confidence            446888899999999999999999999999999999999999999999999999998764311         11223567


Q ss_pred             chHHHHHHHHH
Q 027021          161 WKAYYAATRAV  171 (229)
Q Consensus       161 WK~lY~~~rAI  171 (229)
                      ||++|++++.+
T Consensus        89 WK~~Y~~~~~l   99 (102)
T d2ovrb1          89 WKSAYIRQHRI   99 (102)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.2e-16  Score=120.82  Aligned_cols=56  Identities=25%  Similarity=0.380  Sum_probs=51.3

Q ss_pred             CcCchhhhcc----HHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHHHHHHHhhcCc
Q 027021           95 SGASMMEQLV----PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL  150 (229)
Q Consensus        95 ~~~~~l~~LP----~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LWr~L~~~~f~~  150 (229)
                      ...|++..||    +||+++||+|||+.||+++++|||+|+++++|+.|||++|.+.+..
T Consensus         6 l~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~~   65 (118)
T d1p22a1           6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT   65 (118)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             HcccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhccc
Confidence            5578899999    5999999999999999999999999999999999999999876543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=3.7e-16  Score=116.79  Aligned_cols=74  Identities=12%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             CchhhhccHHHHHHHccCCChHHHHHHhhhcHHHHHHc-CCchHHHHHHHhhcC-cc-------------cCCCCCCCcc
Q 027021           97 ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAA-NDDNAWKALYHKDFT-LE-------------QDSVIPVNGW  161 (229)
Q Consensus        97 ~~~l~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA-~dd~LWr~L~~~~f~-~~-------------~~~~~~~~~W  161 (229)
                      .|++..||+||+++||+|||+.||+++++|||+|++++ +|+.|||+++.++.. .+             .........|
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRL   82 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCCHHHHHHHhcccccCCCcChhhhH
Confidence            58899999999999999999999999999999999986 677999999876632 21             1123334667


Q ss_pred             hHHHHHHHH
Q 027021          162 KAYYAATRA  170 (229)
Q Consensus       162 K~lY~~~rA  170 (229)
                      |..|...+.
T Consensus        83 r~~~~r~~~   91 (100)
T d1nexb1          83 RLSFLENIF   91 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776766654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.2e-15  Score=97.45  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=39.0

Q ss_pred             hhccHHHHHHHccCCChHHHHHHhhhcHHHHHHcCCchHH
Q 027021          101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW  140 (229)
Q Consensus       101 ~~LP~EILl~ILSyLD~~dL~~lsqvcR~~~~lA~dd~LW  140 (229)
                      +.||+||+.+||+|||++||+++++|||+||++++|+.||
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999998

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

Probab=99.15  E-value=2.4e-11  Score=95.26  Aligned_cols=61  Identities=20%  Similarity=0.382  Sum_probs=55.3

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhc---------------CCceeEEeCCCccccchHHHHHHHHHhhccC
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLN---------------ADYVKCIHASGELFSGYDSFYLVLGNVAQWH  227 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~---------------~d~V~CIHPgg~~l~G~daV~~sW~~if~~~  227 (229)
                      ...+|..++++||++|..||+++|+++|.+               .|.|.|+||||+.+.|+++|+++|+.+|...
T Consensus         5 d~~~v~aa~~af~~A~~~~D~~a~~~~w~~d~~~~~~~~~~~~~~~d~v~~~hpg~~~l~G~~ai~~~~~~~~~~~   80 (153)
T d3cnxa1           5 DVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMANT   80 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHhhcccccccccccccccccccceeeecCCCccccCHHHHHHHHHHHhccc
Confidence            356889999999999999999999999963               4679999999999999999999999999654

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Hypothetical protein BxeB1374
species: Burkholderia xenovorans [TaxId: 36873]

Probab=98.16  E-value=1.2e-06  Score=65.65  Aligned_cols=55  Identities=11%  Similarity=0.053  Sum_probs=50.3

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      +|..+..+|++++..||+++|+++|++++.+.|+|+++. +.|++++++.|+..+.
T Consensus        11 ~I~a~~~~~~~A~~~~D~~~l~~l~a~d~~~v~~~~~~~-~~g~~~i~~~~~~~~~   65 (128)
T d2owpa1          11 QVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEV-QHGGEAIRAWRERCEP   65 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSCE-EESHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhccCCcEEEeeccce-ecchhHHHHHHHHhhc
Confidence            577888999999999999999999999999999999875 6899999999998764

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=97.42  E-value=0.0001  Score=53.65  Aligned_cols=57  Identities=11%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ...+|..+..+|++++..+|+++|.++|.++  .+.+.+++..+.|+++|+..|+..|+
T Consensus         6 ~~~aI~~~~~~y~~A~~~~D~~~~~~l~t~D--av~~~~~~~~~~G~~~i~~~~~~~~~   62 (132)
T d3d9ra1           6 ELAVIEAAAIAYLTAFNRADIPAVIATYTDD--GVLMGPGRPAAVGKDELAEVYLSVFE   62 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEECTTSCCEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHhcCCC--eEEEccCCcceehHHHHHHHHHHHhh
Confidence            3568889999999999999999999999754  56788999999999999999998874

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein SO0125
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.42  E-value=0.00013  Score=52.57  Aligned_cols=57  Identities=11%  Similarity=0.032  Sum_probs=51.3

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhcc
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~~  226 (229)
                      ..|..+..++-+++..||++++.++|++++.+.+.++++ .+.|+++|++.|...|.+
T Consensus         4 ~eI~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~~~~~-~~~g~~~i~~~~~~~~~~   60 (121)
T d3b7ca1           4 DDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-FRNGWDETLAAYKKNYPD   60 (121)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-EEECHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHhccCcceEecCCc-ceecHHHHHHHHHHhhcc
Confidence            467788889999999999999999999999999998865 679999999999999865

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=97.38  E-value=7.5e-05  Score=55.07  Aligned_cols=56  Identities=7%  Similarity=0.180  Sum_probs=49.3

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhcc
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~~  226 (229)
                      ++|.++..+|.+++.++|+++|+.+|.++  ...+.++|..+.|+++|++.|+.+|..
T Consensus         3 ~~I~~l~~~~~~A~~~~D~d~~~~l~~~D--a~~~~~~g~~~~G~e~i~~~~~~~~~~   58 (128)
T d2gxfa1           3 QQLKDIISACDLAIQNEDFDTLMNYYSED--AVLVVKPGMIARGKEEIKKAFITIANY   58 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHTTSEEEE--EEEECSSSCEEEHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhccC--CcEecCCCcceeehHHHHHHHHHHHHh
Confidence            56778889999999999999999999864  556788899999999999999999864

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=7.8e-05  Score=53.94  Aligned_cols=60  Identities=13%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhcc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQW  226 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~~  226 (229)
                      ...+|...+.+|++++..||+++|..+|.++..+.+..+.+....|+++++..|+.++..
T Consensus         9 ~~~eI~~l~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   68 (135)
T d2ux0a1           9 RKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSK   68 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCEEEHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHhCcCCCcEEEeccCCceechHHHHHHHHHHHhcc
Confidence            457789999999999999999999999988776677788899999999999999998743

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=97.34  E-value=0.00017  Score=52.83  Aligned_cols=55  Identities=5%  Similarity=0.032  Sum_probs=49.2

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      .+|.....+|++++..||+++|+.+|+.++.+.++++++ .+.|++++++.|+..+
T Consensus        13 aeI~a~~~~~~~A~~~~D~~~l~~l~a~D~~~~~~~~~~-~~~g~~~~~~~~~~~~   67 (127)
T d2rcda1          13 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGE-NLYGIEEIRAFRLARP   67 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTE-EEESHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhcCCCcEEEeCCCc-ccccHHHHHHHHHhcc
Confidence            457788899999999999999999999999999999875 6789999999988765

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.63  E-value=0.00023  Score=50.60  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ...+|+.+..+|++++..||+++|..+|.++..+.+..+.+..+.|++.++..|+..+.
T Consensus         7 ~~~eI~~~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (129)
T d2f86b1           7 QKQDIVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGNRK   65 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHTTSSSCSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHhhcCCceEEEecCCCceeehHHHHHHHHhhccc
Confidence            56789999999999999999999999998776556666677888899999887776554

>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein NpunR1993
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.30  E-value=0.0025  Score=48.67  Aligned_cols=57  Identities=9%  Similarity=0.083  Sum_probs=50.7

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ...+|.....+|++++.++|+++++.+|.++  ...++++|..+.|+++|++.|+..|+
T Consensus         5 De~aI~al~~~~~~A~~~~D~d~~~~l~a~D--~~~~~~~g~~~~G~~~i~~~~~~~~~   61 (162)
T d3cu3a1           5 DESAIRAFHRQMIDAWNRGSGEGFAAPFSET--ADFITFEGTHLKGRKEIAAFHQQAFD   61 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEE--EEEECTTCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHhhccC--eeeecccccccCCHHHHHHHHHHHHh
Confidence            4578889999999999999999999999875  34688999999999999999999884

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=95.63  E-value=0.0089  Score=42.32  Aligned_cols=54  Identities=9%  Similarity=0.179  Sum_probs=45.2

Q ss_pred             HHHHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHh
Q 027021          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNV  223 (229)
Q Consensus       167 ~~rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~i  223 (229)
                      .+..|++...++++++..+|++++..+|+++  +..+||+|.++ +.+++++.|..-
T Consensus         3 ~~~~I~~~~~~~~~A~~~~D~~~l~~l~~~d--~~~~~~~G~~~-~~~~~i~~~~~~   56 (122)
T d2r4ia1           3 QRDVILDCEKKLLTAIQNNDVESLEVLLHDD--LLFIIPSGETV-TKETDIAAYSSG   56 (122)
T ss_dssp             HHHHHTHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECTTSCEE-CHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHhhhccc--EEEEeccceec-cHHHHHHHHhcC
Confidence            3457889999999999999999999999754  89999998764 678888887643

>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Pseudomonas putida [TaxId: 303]

Probab=95.11  E-value=0.013  Score=41.82  Aligned_cols=55  Identities=7%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      ++.....+||+++.++|+++|.+++..+- +.-..+++..+.|.++|++-|+..+.
T Consensus         6 ~~~~~v~~y~~a~~~~D~d~~~~l~~~d~-~~~~p~~~~~~~G~~~i~~~~~~~~~   60 (125)
T d1oh0a_           6 EVQGLMARYIELVDVGDIEAIVQMYADDA-TVEDPFGQPPIHGREQIAAFYRQGLG   60 (125)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEE-EEESSTTSCCEEHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCCE-EEECCCCCcccccHHHHHHHHHHHHH
Confidence            45567788999999999999999998872 22232466788999999999998874

>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Hypothetical protein Rv0760c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.58  E-value=0.018  Score=41.00  Aligned_cols=53  Identities=6%  Similarity=0.047  Sum_probs=42.1

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC--------CCccccchHHHHHHHHHhhc
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--------SGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP--------gg~~l~G~daV~~sW~~if~  225 (229)
                      .+....++|+++..+|+++|.++++++  ++-..|        .+....|+++|++-|+.++.
T Consensus         5 ~~~~~~~~~~a~~~~D~~~~~~l~a~D--~~~~~P~~~~~~~~~~~~~~G~~ai~~~~~~~~~   65 (132)
T d2a15a1           5 ALIASQSSWRCVQAHDREGWLALMADD--VVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIA   65 (132)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHcCCC--eEEEccCCccccCccchheehHHHHHHhhhhhhc
Confidence            456677899999999999999999986  222223        34667899999999998874

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein BxeB2092
species: Burkholderia xenovorans [TaxId: 36873]

Probab=94.01  E-value=0.03  Score=40.89  Aligned_cols=53  Identities=11%  Similarity=0.111  Sum_probs=42.5

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-CCccccchHHHHHHHHHhh
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-gg~~l~G~daV~~sW~~if  224 (229)
                      ++..+..+||+++..||+++|..+++++  ++..+| +|..+.|.++++.-|+.+.
T Consensus         5 ~~~~~v~~~~~A~~~gD~da~~~l~adD--~v~~~p~~~~~~~G~e~i~~~~~~~~   58 (127)
T d3en8a1           5 KIREALNAHWQASAAGDFDAEHDIYDDD--AICDYPQSGERILGRMNLQALRSHHP   58 (127)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHTTTEEEE--EEEEETTTTEEEESHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhcCC--EEEEcCCcccccchHHHHHHHHHHHh
Confidence            3445667899999999999999998876  444445 6789999999999887764

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.38  E-value=0.047  Score=38.15  Aligned_cols=50  Identities=10%  Similarity=-0.011  Sum_probs=41.0

Q ss_pred             HHHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHH
Q 027021          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLG  221 (229)
Q Consensus       169 rAIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~  221 (229)
                      +|+-.+..+|++++..||++++..+++++  +..+++|+. ..|++++++.+.
T Consensus         3 ~a~~~v~~~~~~A~~~~D~~~~~~l~a~D--~~~~~~~~~-~~~~~e~~~~~~   52 (121)
T d3bb9a1           3 SAAGNVVKQFHAALQMGNEAIVRQSLAAN--VQIYEGGKV-ERSLTEYANHHM   52 (121)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTEE-ECSHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHhhCCC--eEEEeCCCc-cCcHHHHHHHHH
Confidence            46778889999999999999999999865  677777654 578888887653

>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]

Probab=93.29  E-value=0.05  Score=38.03  Aligned_cols=55  Identities=11%  Similarity=0.108  Sum_probs=44.0

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      .+..+..+|++++..+|++++..+++++- +.-..+++..+.|.++|+.-|+..+.
T Consensus         6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~-~~~~p~~~~~~~G~~~i~~~~~~~~~   60 (125)
T d1ohpa1           6 HMTAVVQRYVAALNAGDLDGIVALFADDA-TVENPVGSEPRSGTAAIREFYANSLK   60 (125)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEE-EEESSTTSCCEESHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCce-EEecCccCcccccHHHHHHHHHHHhh
Confidence            35567788999999999999999998772 22223467789999999999988764

>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0742-like
domain: Uncharacterized protein Atu0742
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.14  E-value=0.047  Score=39.33  Aligned_cols=52  Identities=8%  Similarity=0.010  Sum_probs=41.8

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      .+..+||+++.++|++++.++++++- +.-..+++....|.++++.-|+..|.
T Consensus         7 ~~V~~~~~A~~~~D~e~~~~~~aeD~-~~~~~~~~~~~~g~~~i~~~~~~~~~   58 (123)
T d2k54a1           7 LPVQKQLEAYNARDIDAFMAWWADDC-QYYAFPATLLAGNAAEIRVRHIERFK   58 (123)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTEEEEE-EEEETTTEEEEESHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHhcCCCe-EEEcCCCcceechHHHHHHHHHhhhc
Confidence            45678999999999999999998772 22223567888899999999998875

>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Uncharacterized protein Mb2760
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.10  E-value=0.067  Score=38.76  Aligned_cols=53  Identities=8%  Similarity=0.075  Sum_probs=43.7

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      -+.+..+||+++.++|+++|.++++++  ++-..|+...+.|.+++++-++.++.
T Consensus         5 ~~~~V~~f~~A~~~~D~d~~~~~~a~D--~v~~~~~~~~~~G~~~~~~~~~~~~~   57 (132)
T d2bnga1           5 AIRAVEAFLNALQNEDFDTVDAALGDD--LVYENVGFSRIRGGRRTATLLRRMQG   57 (132)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTTEEEECHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHhccc--hheeccccCCcchHHHHHHHHHhccc
Confidence            346778899999999999999999766  44556777788999999999987664

>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Uncharacterized protein BPSS0132
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=92.75  E-value=0.05  Score=38.65  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=41.0

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC-------CccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-------GELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg-------g~~l~G~daV~~sW~~if  224 (229)
                      ++..+||+++..||+++|..+++++  ++-.+|+       +..+.|.+++++-|+.++
T Consensus         6 ~~v~~~~~a~~~~D~~~~~~~~a~D--~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~   62 (131)
T d3ebta1           6 QTVRESYEAFHRRDLPGVLAALAPD--VRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVP   62 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEEE--EEEEECGGGGGGTCCEEEEHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhCcc--eEEEEcCCCcccCccccccchHHHHHhhhhhc
Confidence            4567899999999999999988775  5556655       346789999999999886

>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein Rpa4348
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=90.74  E-value=0.16  Score=36.43  Aligned_cols=51  Identities=8%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEe-------CCCccccchHHHHHHHHHhhc
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIH-------ASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIH-------Pgg~~l~G~daV~~sW~~if~  225 (229)
                      ....+||+++.++|++.|..+.+++  +....       |-+....|.+++++-|+.+++
T Consensus         8 ~~~~~~y~A~~~~d~d~~~~l~~~D--~~~~~~g~~~~~P~~G~~~G~~~~~~~~~~~~~   65 (135)
T d3dm8a1           8 RFSRALHRALNDRQTEELATIIDDN--IDWAIYGPIDMFPFFGARQGKAAVLEVCRQIAD   65 (135)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHEEEE--EEEEEESCTTTCTTCEEEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHhcCcc--eEEEccccccccccccccccchhhhhhhhhccc
Confidence            4457899999999999999998766  43332       445677899999999998873

>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Hypothetical protein egc068 from a soil-derived mobile gene cassette
domain: Hypothetical protein egc068 from a soil-derived mobile gene cassette
species: uncultured organism [TaxId: 155900]

Probab=90.31  E-value=0.18  Score=35.43  Aligned_cols=52  Identities=4%  Similarity=0.126  Sum_probs=40.9

Q ss_pred             HHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC----CccccchHHHHHHHHHhh
Q 027021          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS----GELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       171 Iv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg----g~~l~G~daV~~sW~~if  224 (229)
                      =+.+..+||+++..+|+++|..+...+  +.-.+|+    +..+.|.++++..|..++
T Consensus         6 n~~vv~~~~~a~~~~D~~~~~~l~~~D--~~~~~~~~~p~~g~~~G~~~~~~~~~~~~   61 (131)
T d1tuha_           6 NAETVRRGYAAFNSGDMKTLTELFDEN--ASWHTPGRSRIAGDHKGREAIFAQFGRYG   61 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEECSSSTTCEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhcCCC--EEEEecCCCCcccccccHHHHHHHHHhhh
Confidence            345677899999999999999998775  4444444    445679999999998876

>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Limonene-1,2-epoxide hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=90.11  E-value=0.21  Score=36.58  Aligned_cols=50  Identities=10%  Similarity=0.125  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhhc
Q 027021          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVAQ  225 (229)
Q Consensus       174 vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if~  225 (229)
                      +..+||+++..+|++.+..++.++- +.-. +++..+.|.+++++-|+..+.
T Consensus        23 lv~~~~~A~~~~D~~~~~~~~~~D~-~~~~-~~~~~~~G~e~~~~~~~~~~~   72 (145)
T d1nwwa_          23 IVLEFMDALTSNDAAKLIEYFAEDT-MYQN-MPLPPAYGRDAVEQTLAGLFT   72 (145)
T ss_dssp             HHHHHHHHGGGCCHHHHHTTBCSSC-EEEE-TTSCCEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhccc-eEec-CCcccccCHHHHHHHHHhhhh
Confidence            4567999999999999999887764 3333 445567999999999998763

>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein PA3332
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.45  E-value=0.11  Score=36.36  Aligned_cols=49  Identities=4%  Similarity=0.067  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHhcChHHHHHhhhcCCceeEEeCC-----CccccchHHHHHHHHHhh
Q 027021          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-----GELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       174 vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPg-----g~~l~G~daV~~sW~~if  224 (229)
                      ...+||+++..||++.+..+++++  ++...|+     +..+.|.++|++-++.++
T Consensus         6 iv~~~~~~~~~gD~~~~~~l~a~D--~v~~~p~~~~~~~~~~~G~~~i~~~~~~~~   59 (129)
T d1z1sa1           6 ILVHSLRLLENGDARGWCDLFHPE--GVLEFPYAPPGWKTRFEGRETIWAHMRLFP   59 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTEEEE--EEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHhcCc--eEEEEecCCcccceEEeCHHHHHHHHHhhh
Confidence            446799999999999999999775  5555553     346789999998776654

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Hypothetical protein YesE
species: Bacillus subtilis [TaxId: 1423]

Probab=89.08  E-value=0.12  Score=37.06  Aligned_cols=53  Identities=11%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             HHHHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeC-----CCccccchHHHHHHHHHhh
Q 027021          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-----SGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       170 AIv~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHP-----gg~~l~G~daV~~sW~~if  224 (229)
                      ...+...+||+++.++|++++..+++++-  +-..|     .+..+.|.+++++-|+.++
T Consensus         6 ~~~e~v~~~~~a~~~~D~~~~~~l~~eD~--v~~~p~~~~~~~~~~~G~~~i~~~~~~~~   63 (139)
T d1s5aa_           6 KACETLRKFMAYMLEKDMKSWTELWDENA--VFEFPYAPEGSPKRIEGKAAIYDYIKDYP   63 (139)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECTTCCTTSCSEEESHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCce--EEEEccCCccccceecchHHHHHhhhhch
Confidence            33456678999999999999999997763  22333     2457889999998887665

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Orange carotenoid protein, C-terminal domain
domain: Orange carotenoid protein, C-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

Probab=88.52  E-value=0.15  Score=39.32  Aligned_cols=48  Identities=2%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHh
Q 027021          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNV  223 (229)
Q Consensus       174 vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~i  223 (229)
                      +..+||+++..+|++++.++++++.-+.  -|.+..++|.+||++=|+.-
T Consensus        24 ~V~~Y~~a~na~D~d~~~~lFa~Dav~~--~P~~~p~~G~eaI~~f~~~~   71 (142)
T d1m98a2          24 TVLQYMDNLNANDFDNLISLFAEDGALQ--PPFQKPIVGKENTLRFFREE   71 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHTTEEEEEEEE--CTTSCCEESHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHcCCCeEEe--CCCCccccCHHHHHHHHHHh
Confidence            4677999999999999999999885432  37788999999999877753

>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein Ava2261
species: Anabaena variabilis [TaxId: 1172]

Probab=88.35  E-value=0.36  Score=34.80  Aligned_cols=51  Identities=12%  Similarity=-0.003  Sum_probs=39.9

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCc---cccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE---LFSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~---~l~G~daV~~sW~~if  224 (229)
                      -+...+|++++..||++++..+++++  ++-..|+++   ...|.++|++-++.++
T Consensus        14 ~~~~e~f~~a~~~gD~d~~~~l~~~D--~~~~~p~~~~~g~~~G~~~v~~~~~~~~   67 (133)
T d3dmca1          14 HQGFEFFTQGLATGEWQKFLDMLTED--FTFWFPMGEFHGLNVGKERAKEFFTYVS   67 (133)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHTTEEEE--EEEEESSGGGBEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhccc--eEEEecCCCcccchhhHHHHHHHhhhcc
Confidence            35667899999999999999999765  444566644   4679999999888776

>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalamycin biosynthesis protein SnoL
species: Streptomyces nogalater [TaxId: 38314]

Probab=86.56  E-value=0.59  Score=33.40  Aligned_cols=49  Identities=6%  Similarity=0.041  Sum_probs=38.5

Q ss_pred             HhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       173 ~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      ++..+||+++.++|++.|..+++.+  +.-..|++ ...|.+++++.++..+
T Consensus         7 e~~~~~~~a~~~~D~~~~~~~~a~D--~~~~~~~~-~~~G~~~~~~~~~~~~   55 (138)
T d2gexa1           7 ERCLEMVAAWNRWDVSGVVAHWAPD--VVHYDDED-KPVSAEEVVRRMNSAV   55 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEEE--EEEECTTS-CEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHhCcc--ccccCCCC-CccCHHHHHHHHHHHH
Confidence            4556799999999999999998877  43334444 4469999999998876

>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Aklanonic acid methyl ester cyclase, AknH
species: Streptomyces galilaeus [TaxId: 33899]

Probab=84.36  E-value=0.19  Score=36.75  Aligned_cols=52  Identities=8%  Similarity=0.056  Sum_probs=38.3

Q ss_pred             HHhhHHHHHHHHhcChHHHHHhhhcCCceeEEeCCCccccchHHHHHHHHHhh
Q 027021          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYDSFYLVLGNVA  224 (229)
Q Consensus       172 v~vn~~fY~aIr~gdl~aM~~iW~~~d~V~CIHPgg~~l~G~daV~~sW~~if  224 (229)
                      +.+..+||+++.+||++.+..++..+ .+.-.-+.+..+.|++++++.|+..+
T Consensus         4 ~a~vr~~~~a~~~gd~d~~~~~~~~D-~~~~~~~~~~~~~G~e~~~~~~~~~~   55 (140)
T d2f99a1           4 IAAVRRMVEAYNTGKTDDVADYIHPE-YMNPGTLEFTSLRGPELFAINVAWVK   55 (140)
T ss_dssp             HHHHHHHHHHHHHCCCTTGGGTEEEE-EECGGGTTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHhcCce-EEEecCCCCCCccCHHHHHHHHHHHh
Confidence            34567899999999999999888655 22212234566789999999887654